Package | Description |
---|---|
de.unihalle.informatik.Alida.dataconverter | |
de.unihalle.informatik.Alida.dataio.provider.swing |
Package containing data I/O providers for GUIs based on Java Swing.
|
de.unihalle.informatik.Alida.dataio.provider.swing.components | |
de.unihalle.informatik.Alida.demo |
Demonstrator package of how to implement and use Alida operators.
|
de.unihalle.informatik.Alida.grappa |
Contains all resources for the graphical programming editor Grappa.
|
de.unihalle.informatik.Alida.gui |
Package containing GUI components for interactive operator selection/control.
|
de.unihalle.informatik.Alida.operator |
Contains the core of Alida, i.e. the operator concept and processing graph stuff.
|
de.unihalle.informatik.Alida.workflows |
Classes related to workflows in Alida.
|
Modifier and Type | Method and Description |
---|---|
protected void |
ALDNumberConverter.operate() |
Constructor and Description |
---|
ALDNumberConverter()
Default constructor.
|
ALDVectorNativeArrayConverter()
Default constructor.
|
Modifier and Type | Method and Description |
---|---|
protected ALDOperator |
ALDOperatorDataIOSwing.OperatorConfigWindow.setOperatorParameters(Field field,
Class<?> cl) |
Modifier and Type | Method and Description |
---|---|
HashMap<ALDParameterDescriptor,String> |
ALDOperatorParameterPanel.validateOperatorParameters(boolean deepValidate)
Check if operator is ready to run.
|
Modifier and Type | Method and Description |
---|---|
void |
ALDDynamicOpExtended.callback1() |
void |
ALDDynamicOpExtended.callback2() |
void |
ALDDynamicOp.initDataType() |
void |
ALDDynamicOpExtended.initDataType() |
protected void |
CorrectForBaseline1D.operate() |
protected void |
WriteExperimentalData1D.operate() |
protected void |
ReadExperimentalData1D.operate() |
protected void |
MatrixSum.operate() |
protected void |
ApplyToMatrix.operate() |
protected void |
DetectBaseline1D.operate() |
protected void |
WriteExtrema1D.operate() |
protected void |
ALDDynamicOp.operate() |
protected void |
DemoWorkflow1D.operate() |
protected void |
ALDDynamicOpExtended.operate() |
private void |
SmoothData1D.smoothingMethodChanged()
Callback routine to change parameters on change of smoothing method.
|
void |
RefineLocalExtrema1D.validateCustom() |
Constructor and Description |
---|
ALDArrayMean()
Default constructor.
|
ALDArrayMean(Double[] data)
Constructor.
|
ALDArrayMin()
Default constructor.
|
ALDArrayMin(Double[] data)
Constructor.
|
ALDArraySum()
Default constructor.
|
ALDArraySum(Double[] data)
Constructor.
|
ALDCalcMeanArray()
Default constructor.
|
ALDCalcMeanArray(Double[] _data)
Constructor.
|
ALDDemoOpControllable()
Default constructor.
|
ALDDemoOpControllableHandle()
Default constructor.
|
ALDDynamicOp()
Default constructor.
|
ALDDynamicOpExtended()
Default constructor.
|
ALDParameterTester()
Default constructor.
|
ALDSummarizeArrayOp()
Default constructor.
|
ALDTransposeMatrix()
Default constructor.
|
ALDTransposeMatrix(int[][] _data)
Constructor.
|
ApplyToMatrix()
Default constructor.
|
ApplyToMatrix(Double[][] _matrix)
Constructor.
|
CorrectForBaseline1D()
Default constructor.
|
DemoWorkflow1D()
Default constructor.
|
DetectBaseline1D()
Default constructor.
|
DetectLocalExtrema1D()
Default constructor.
|
MatrixSum()
Default constructor.
|
MatrixSum(Double[][] _matrix)
Constructor.
|
ReadExperimentalData1D()
Default constructor.
|
RefineLocalExtrema1D()
Default constructor.
|
SmoothData1D()
Default constructor.
|
WriteExperimentalData1D()
Default constructor.
|
WriteExtrema1D()
Default constructor.
|
Modifier and Type | Method and Description |
---|---|
protected void |
ALDGrappaWorkbenchTab.addPortsToNode(ALDOperator op,
com.mxgraph.model.mxCell v)
Adds the ports of the operator's parameters to the given node.
|
protected ALDOperatorConfigurationFrame |
ALDGrappaWorkbenchTab.getNewConfigWin(ALDOperator op,
ALDGrappaWorkbenchTab.ParameterUpdateListener pListen)
Generate a new configuration window.
|
private static Collection<String> |
ALDGrappaWorkbenchTab.sortParamsByIOOrder(ALDOperator op,
Collection<String> params)
Sorts a set of parameters according to category and I/O order.
|
Modifier and Type | Method and Description |
---|---|
Iterator<Object> |
ALDOperatorControlFrame.getInputParamIterator(String param)
Returns an iterator for a specific input parameter in batch mode.
|
protected ALDOperatorControlFrame |
ALDOperatorGUIExecutionProxy.getNewConfigWin(ALDOperator op)
Generate a new configuration window.
|
void |
ALDOperatorGUIExecutionProxy.runWorkflowInBatchMode() |
Constructor and Description |
---|
ALDOperatorConfigurationFrame(ALDOperator _op,
ALDOpParameterUpdateEventListener pListen)
Constructs a control frame for an operator object.
|
ALDOperatorControlFrame(ALDOperator _op,
ALDOperatorGUIExecutionProxy em,
ALDOpParameterUpdateEventListener pL)
Constructs a new control frame for an operator object.
|
Modifier and Type | Method and Description |
---|---|
protected void |
ALDOperator.addParameter(ALDOpParameterDescriptor descr)
Add a parameter with the given descriptor to the operator.
|
protected void |
ALDOperator.addParameter(String name)
Add a parameter with the given
name to the operator. |
ALDOperator |
ALDOperatorLocation.createOperator()
Create an
ALDOperator form this location object. |
protected ALDOperatorConfigurationFrame |
ALDOperatorCollection.getConfigWin(ALDOperator op,
ALDOpParameterUpdateEventListener pListen)
Generate configuration window for given operator.
|
Object |
ALDOperator.getParameter(String name)
Get the value of a parameter specified by name.
|
ALDOpParameterDescriptor |
ALDOperator.getParameterDescriptor(String name)
Get the parameter descriptor for given name.
|
protected ALDOpParameterDescriptor |
ALDOperator.getParameterDescriptorUnconditioned(String name)
Get the parameter descriptor for given name.
|
protected Object |
ALDOperator.getParameterUnconditioned(String name)
Get the value of a parameter specified by name.
|
Object |
ALDOpParameterDescriptor.getValue(Object instance) |
Boolean |
ALDOperator.getVerbose()
Return the verbose state of this opertor.
|
protected void |
ALDToplevelOperator.operate()
The abstract method operate needs to be implemented, but this
top levels operator is never to be invoked.
|
protected abstract void |
ALDOperator.operate()
This method does the actual work and needs to be implemented by every
subclass.
|
protected void |
ALDOperator.removeParameter(String name)
Remove the descriptor associated with
name . |
void |
ALDOperator.runOp()
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
|
void |
ALDOperator.runOp(ALDOperator.HidingMode hidingMode)
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
|
void |
ALDOperator.runOp(boolean hidden)
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
|
void |
ALDOperator.setParameter(String name,
Object value)
Set the value of a parameter specified by name.
|
protected void |
ALDOperator.setParameterUnconditioned(String name,
Object value)
Set the value of a parameter specified by name.
|
void |
ALDOpParameterDescriptor.setValue(Object _value,
Object instance)
Sets the value of the object represented by this descriptor.
|
void |
ALDOperator.setVerbose(Boolean verbose)
Set the verbose state of this opertor.
|
void |
ALDOperator.validate()
Validates the parameters and inputs of this operator.
|
void |
ALDOperator.validateCustom()
Operator specific validation of parameters and inputs.
|
void |
ALDOperator.validateGeneric()
Generic validation of the in and inout parameters of this operator.
|
protected void |
ALDPortHashAccess.writeHistory(Object obj,
String filename)
Deprecated.
|
static void |
ALDOperator.writeHistory(Object obj,
String filename)
Write the processing history if any to a graphml file.
|
protected void |
ALDPortHashAccess.writeHistory(Object obj,
String filename,
ALDProcessingDAG.HistoryType historyType)
Deprecated.
|
static void |
ALDOperator.writeHistory(Object obj,
String filename,
ALDProcessingDAG.HistoryType historyType)
Write the processing history if any to a graphml file.
|
protected void |
ALDPortHashAccess.writeHistory(Object obj,
String filename,
ALDProcessingDAG.HistoryType historyType,
boolean ignoreHiding)
Write the processing history (if available) to a graphml file.
|
static void |
ALDOperator.writeHistory(Object obj,
String filename,
ALDProcessingDAG.HistoryType historyType,
boolean ignoreHiding)
Write the processing history if any to a graphml file.
|
Constructor and Description |
---|
ALDOperator()
This constructor initializes an operator.
|
ALDOperatorCollection(Class<T> type)
Default constructor.
|
ALDOperatorCollectionElement()
Default constructor.
|
ALDOperatorControllable()
Default constructor.
|
ALDToplevelOperator()
Construct a (dummy) top level opNode
|
OperatorExecutionProxy()
Default constructor.
|
Modifier and Type | Method and Description |
---|---|
private static void |
ALDWorkflow.executeNode(ALDWorkflow workflow,
ALDWorkflowNode node,
boolean showResults)
This actually runOps the operator in its own thread
and takes care of firing events for state changes.
|
protected void |
ALDWorkflow.operate() |
Constructor and Description |
---|
ALDWorkflow()
Constructor for an untitled workflow in a grappa context.
|
ALDWorkflow(ALDWorkflow.ALDWorkflowContextType context)
Constructor for an untitled workflow
|
ALDWorkflow(String name)
Constructor for a workflow in a grappa context.
|
ALDWorkflow(String name,
ALDWorkflow.ALDWorkflowContextType context)
Constructor
|
Copyright © 2010–2021 Martin Luther University Halle-Wittenberg, Institute of Computer Science, Pattern Recognition and Bioinformatics. All rights reserved.