Field Detail

• source

  public RandomAccessible<R> source

  The source image.

• calibration

  public double[] calibration

  The source image calibration. That is: the pixel sizes in all dimensions, to account for anisotropy in the source image ( e.g.dz might larger that dx, and the detector needs to exploit that).

  The segmented spots will be returned with coordinates scaled with this calibration (image coordinates).

• interval

  public Interval interval

  The neighborhood in the source image to inspect, in pixel coordinates.

• transform

  public AffineTransform3D transform

  An affine transform that will convert the spot coordinates in the calibrated image coordinates to the global coordinate system whatever it is. If you do not have fancy rotations and multi-sources handling, this is most likely the identity transform.

Constructor Detail

• SearchRegion

  public SearchRegion()