Field Detail

• originalLabels

  protected ij.ImagePlus originalLabels

  original labels (single 2D image or stack)

• proposedLabels

  protected ij.ImagePlus proposedLabels

  proposed new labels (single 2D image or stack of the same as as the original labels)

• verbose

  protected boolean verbose

  boolean flag to set the level of detail on the standard output messages

Constructor Detail

• Metrics

  public Metrics(ij.ImagePlus originalLabels,
                 ij.ImagePlus proposedLabels)

Method Detail

• getMetricValue

  public abstract double getMetricValue(double binaryThreshold)

• setVerboseMode

  public void setVerboseMode(boolean verbose)

  Set verbose mode

  Parameters:

  verbose - true to display more information in the standard output

• getMinimumMetricValue

  public double getMinimumMetricValue(double minThreshold,
                                      double maxThreshold,
                                      double stepThreshold)

  Get the minimum metric value over a set of thresholds

  Parameters:

  minThreshold - minimum threshold value to binarize the input images

  maxThreshold - maximum threshold value to binarize the input images

  stepThreshold - threshold step value to use during binarization

  Returns:

  minimum value of the metric