Quantile_Based_Normalization (Fiji Javadocs 0-SNAPSHOT API)

java.lang.Object
- util.Quantile_Based_Normalization

All Implemented Interfaces:: ij.plugin.PlugIn, ActionListener, ItemListener, EventListener

public class Quantile_Based_Normalization
extends Object
implements ij.plugin.PlugIn, ActionListener, ItemListener

Nested Class Summary

Nested Classes
Modifier and Type Class and Description

static class Quantile_Based_Normalization.Mask

Nested Classes
Modifier and Type	Class and Description
`static class`	`Quantile_Based_Normalization.Mask`

Field Summary

Fields
Modifier and Type Field and Description

static String PLUGIN_VERSION

Fields
Modifier and Type	Field and Description
`static String`	`PLUGIN_VERSION`

Constructor Summary

Constructors
Constructor and Description

Quantile_Based_Normalization()

Constructors
Constructor and Description
`Quantile_Based_Normalization()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`actionPerformed(ActionEvent e)`
`void`	`divideIntoQuantiles(int numberOfQuantiles, long[] frequencies, long pointsInImage, long[] resultSumValuesInQuantile, long[] resultNumberOfValuesInQuantile)`
`void`	`generateReplacements(ij.ImagePlus imagePlus, int numberOfQuantiles, long pointsInImage, long[] frequencies, long[] sumValuesInQuantile, long[] numberOfValuesInQuantile, double[] quantileMeans, util.Quantile_Based_Normalization.Replacements[] resultRankReplacements, util.Quantile_Based_Normalization.Replacements[] resultMeanReplacements)`
`void`	`itemStateChanged(ItemEvent e)`
`void`	`processToDirectory(FileGroup fg, String outputDirectory, boolean useMaskPerImage, String maskFileName, int channelToUse, int numberOfQuantiles, boolean replaceWithRankInstead, boolean rescaleRanks)`
`void`	`run(String ignored)`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- PLUGIN_VERSION
```
public static final String PLUGIN_VERSION
```
  See Also:
  
  Constant Field Values

Constructor Detail
- Quantile_Based_Normalization
```
public Quantile_Based_Normalization()
```

Method Detail

divideIntoQuantiles

public void divideIntoQuantiles(int numberOfQuantiles,
                                long[] frequencies,
                                long pointsInImage,
                                long[] resultSumValuesInQuantile,
                                long[] resultNumberOfValuesInQuantile)

generateReplacements

public void generateReplacements(ij.ImagePlus imagePlus,
                                 int numberOfQuantiles,
                                 long pointsInImage,
                                 long[] frequencies,
                                 long[] sumValuesInQuantile,
                                 long[] numberOfValuesInQuantile,
                                 double[] quantileMeans,
                                 util.Quantile_Based_Normalization.Replacements[] resultRankReplacements,
                                 util.Quantile_Based_Normalization.Replacements[] resultMeanReplacements)

processToDirectory

public void processToDirectory(FileGroup fg,
                               String outputDirectory,
                               boolean useMaskPerImage,
                               String maskFileName,
                               int channelToUse,
                               int numberOfQuantiles,
                               boolean replaceWithRankInstead,
                               boolean rescaleRanks)

run
```
public void run(String ignored)
```
Specified by:

run in interface ij.plugin.PlugIn

actionPerformed
```
public void actionPerformed(ActionEvent e)
```
Specified by:

actionPerformed in interface ActionListener

itemStateChanged
```
public void itemStateChanged(ItemEvent e)
```
Specified by:

itemStateChanged in interface ItemListener

Class Quantile_Based_Normalization

Nested Class Summary

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

PLUGIN_VERSION

Constructor Detail

Quantile_Based_Normalization

Method Detail

divideIntoQuantiles

generateReplacements

processToDirectory

run

actionPerformed

itemStateChanged