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A

a - Variable in class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
a - Variable in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
a - Variable in class net.imglib2.algorithm.math.abstractions.AUnaryFunction
 
a - Variable in class net.imglib2.algorithm.math.execution.Comparison
 
a - Variable in class net.imglib2.algorithm.math.execution.LogicalNot
 
a - Variable in class net.imglib2.realtransform.AbstractAffineTransform
 
a - Variable in class net.imglib2.realtransform.AffineTransform2D
 
a - Variable in class net.imglib2.realtransform.AffineTransform3D
 
a - Variable in class net.imglib2.realtransform.PolynomialTransform2D
holds two coefficients for each polynomial coefficient, including 1 initialized at 0 order, i.e.
a - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
a - Variable in class net.imglib2.util.ValuePair
 
a - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
ABinaryFunction - Class in net.imglib2.algorithm.math.abstractions
 
ABinaryFunction(Object, Object) - Constructor for class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
ABinaryFunction(Object...) - Constructor for class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
ABooleanFunction<O extends RealType<O>> - Class in net.imglib2.algorithm.math.abstractions
 
ABooleanFunction(O) - Constructor for class net.imglib2.algorithm.math.abstractions.ABooleanFunction
 
Abstract3x3TableOperation - Class in net.imglib2.algorithm.morphology.table2d
Performs a binary operation on a 3x3 2-D neighborhood using a table of truth values to drive the operation.
Abstract3x3TableOperation() - Constructor for class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
AbstractAccessProxy<T> - Class in net.imglib2.img.io.proxyaccess
 
AbstractAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.AbstractAccessProxy
 
AbstractAdaptingInterval(int) - Constructor for class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
AbstractAdaptingRealInterval(int) - Constructor for class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
 
AbstractAffineTransform - Class in net.imglib2.realtransform
An abstract implementation of an affine transformation that returns default values referring to the identity transformation for all fields.
AbstractAffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractAffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractAffineTransform(int) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractARGBDoubleType<T extends AbstractARGBDoubleType<T>> - Class in net.imglib2.type.numeric
 
AbstractARGBDoubleType() - Constructor for class net.imglib2.type.numeric.AbstractARGBDoubleType
 
AbstractArrayColorTable<T> - Class in net.imglib2.display
Abstract superclass for array-based color lookup tables.
AbstractArrayColorTable(T...) - Constructor for class net.imglib2.display.AbstractArrayColorTable
Initializes a color table with the given table values.
AbstractArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
AbstractArrayCursor(AbstractArrayCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
TODO Javadoc
AbstractArrayCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
TODO Javadoc
AbstractArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
Localizing Cursor on an ArrayImg.
AbstractArrayLocalizingCursor(AbstractArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
TODO Javadoc
AbstractArrayLocalizingCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
TODO Javadoc
AbstractBit64Type<T extends AbstractBit64Type<T>> - Class in net.imglib2.type
A Type with arbitrary bit depth up to maximum 64 bits.
AbstractBit64Type(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(long, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(LongAccess, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBitType<T extends AbstractBitType<T>> - Class in net.imglib2.type
Provides basic infrastructure to implement Types based on single bits stored in a LongAccess
AbstractBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBitType
 
AbstractBooleanArray<A extends AbstractBooleanArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractBooleanArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
AbstractBooleanArray(boolean[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
AbstractBsplineKernel - Class in net.imglib2.algorithm.bspline
 
AbstractBsplineKernel() - Constructor for class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
AbstractByteArray<A extends AbstractByteArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
AbstractByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
AbstractByteArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractByteArrayIo
 
AbstractCache<K,V> - Interface in net.imglib2.cache
 
AbstractCacheKeyAdapter<K,L,V,C extends AbstractCache<L,V>> - Class in net.imglib2.cache.util
Wraps a Cache<L,V> as a Cache<K,V>, using a KeyBimap<K,L> to translate keys.
AbstractCacheKeyAdapter(C, KeyBimap<K, L>) - Constructor for class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
AbstractCellImg<T extends NativeType<T>,A,C extends Cell<A>,I extends RandomAccessible<C> & IterableInterval<C>> - Class in net.imglib2.img.cell
Abstract superclass for Img types that divide their underlying data into cells.
AbstractCellImg(CellGrid, I, Fraction) - Constructor for class net.imglib2.img.cell.AbstractCellImg
 
AbstractCellImg.CellImgSampler<C> - Interface in net.imglib2.img.cell
This interface is implemented by all samplers on the AbstractCellImg.
AbstractCharArray<A extends AbstractCharArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
AbstractCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
AbstractCharArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractCharArrayIo
 
AbstractComplexType<T extends AbstractComplexType<T>> - Class in net.imglib2.type.numeric.complex
TODO
AbstractComplexType() - Constructor for class net.imglib2.type.numeric.complex.AbstractComplexType
 
AbstractComposite<T> - Class in net.imglib2.view.composite
Abstract implementation of Composite.
AbstractComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.AbstractComposite
 
AbstractConvertedCursor<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedCursor(Cursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedCursor
 
AbstractConvertedIterableInterval<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableInterval(IterableInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableInterval
 
AbstractConvertedIterableRandomAccessibleInterval<A,B,S extends RandomAccessible<A> & IterableInterval<A>> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableRandomAccessibleInterval(S) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
AbstractConvertedIterableRealInterval<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableRealInterval(IterableRealInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRealInterval
 
AbstractConvertedRandomAccess<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRandomAccess(RandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccess
 
AbstractConvertedRandomAccessible<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRandomAccessible(RandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessible
 
AbstractConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter
 
AbstractConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
AbstractConvertedRealCursor<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealCursor(RealCursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealCursor
 
AbstractConvertedRealRandomAccess<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealRandomAccess(RealRandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
AbstractConvertedRealRandomAccessible<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealRandomAccessible(RealRandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
AbstractCursor<T> - Class in net.imglib2
Abstract implementation of Cursor.
AbstractCursor(int) - Constructor for class net.imglib2.AbstractCursor
 
AbstractCursorInt<T> - Class in net.imglib2
Abstract implementation of Cursor.
AbstractCursorInt(int) - Constructor for class net.imglib2.AbstractCursorInt
 
AbstractDifferentiableRealTransform - Class in net.imglib2.realtransform.inverse
 
AbstractDifferentiableRealTransform() - Constructor for class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform
 
AbstractDoubleArray<A extends AbstractDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
AbstractDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
AbstractDoubleArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractDoubleArrayIo
 
AbstractEuclideanSpace - Class in net.imglib2
Superclass of abstract EuclideanSpace implementations (accessors, containers, etc).
AbstractEuclideanSpace(int) - Constructor for class net.imglib2.AbstractEuclideanSpace
 
AbstractFloatArray<A extends AbstractFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
AbstractFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
AbstractFloatArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractFloatArrayIo
 
AbstractFunctionEuclideanSpace<P,T> - Class in net.imglib2.position
Abstract base class for functions that generate values through a BiConsumer.
AbstractFunctionEuclideanSpace(int, Supplier<BiConsumer<P, ? super T>>, Supplier<T>) - Constructor for class net.imglib2.position.AbstractFunctionEuclideanSpace
Constructor for stateful functions that cannot be used concurrently.
AbstractFunctionEuclideanSpace(int, BiConsumer<P, ? super T>, Supplier<T>) - Constructor for class net.imglib2.position.AbstractFunctionEuclideanSpace
Simplified constructor if the same function is stateless and can be used concurrently.
AbstractGauss<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss
 
AbstractGauss(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.gauss.AbstractGauss
 
AbstractImg<T> - Class in net.imglib2.img
TODO
AbstractImg(long[]) - Constructor for class net.imglib2.img.AbstractImg
 
AbstractIntArray<A extends AbstractIntArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
AbstractIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
AbstractIntArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractIntArrayIo
 
AbstractIntegerBitType<T extends AbstractIntegerBitType<T>> - Class in net.imglib2.type.numeric.integer
The performance of this type is traded off for the gain in memory storage.
AbstractIntegerBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
AbstractIntegerType<T extends AbstractIntegerType<T>> - Class in net.imglib2.type.numeric.integer
TODO
AbstractIntegerType() - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerType
 
AbstractInterval - Class in net.imglib2
Implementation of the Interval interface.
AbstractInterval(int) - Constructor for class net.imglib2.AbstractInterval
Creates an n-dimensional AbstractInterval with min and max = 0n.
AbstractInterval(Interval) - Constructor for class net.imglib2.AbstractInterval
Creates a AbstractInterval from another Interval
AbstractInterval(Dimensions) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [0, dimensions-1]
AbstractInterval(long[], long[], boolean) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [min, max] (both including)
AbstractInterval(long[], long[]) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [min, max] (both including)
AbstractInterval(Localizable, Localizable) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [min, max] (both including)
AbstractInterval(long[]) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [0, dimensions-1]
AbstractIterableRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AbstractIterableRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
AbstractIterableRegionOfInterest.AROIClippedIterableInterval<T extends Type<T>> - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterableInterval<T extends Type<T>> - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterationOrder - Class in net.imglib2.roi
Deprecated.
 
AbstractLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
AbstractLabeling(long[], LabelingROIStrategyFactory<T>) - Constructor for class net.imglib2.labeling.AbstractLabeling
Deprecated.
 
AbstractLinearRange - Class in net.imglib2.display
 
AbstractLinearRange() - Constructor for class net.imglib2.display.AbstractLinearRange
 
AbstractLinearRange(double, double) - Constructor for class net.imglib2.display.AbstractLinearRange
 
AbstractLineIterator - Class in net.imglib2.algorithm.gauss
Deprecated.
AbstractLineIterator(int, long, A) - Constructor for class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
Make a new LineIterator which iterates a 1d line of a certain length
AbstractLineIterator(int, long, Localizable, Positionable) - Constructor for class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
Make a new LineIterator which iterates a 1d line of a certain length
AbstractListImg<T> - Class in net.imglib2.img.list
Abstract base class for Img that store pixels in a single linear array (an ArrayList or similar).In principle, the number of entities stored is limited to Integer.MAX_VALUE.
AbstractListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractListImg
 
AbstractLocalizable - Class in net.imglib2
An abstract class that implements the Localizable interface using a long[] array to maintain position.
AbstractLocalizable(int) - Constructor for class net.imglib2.AbstractLocalizable
 
AbstractLocalizable(long[]) - Constructor for class net.imglib2.AbstractLocalizable
Protected constructor that re-uses the passed position array.
AbstractLocalizableInt - Class in net.imglib2
An abstract class that implements the Localizable interface using an int[] array to maintain position.
AbstractLocalizableInt(int) - Constructor for class net.imglib2.AbstractLocalizableInt
 
AbstractLocalizableInt(int[]) - Constructor for class net.imglib2.AbstractLocalizableInt
Protected constructor that re-uses the passed position array.
AbstractLocalizingCursor<T> - Class in net.imglib2
Abstract base class for localizing Cursors.
AbstractLocalizingCursor(int) - Constructor for class net.imglib2.AbstractLocalizingCursor
 
AbstractLocalizingCursorInt<T> - Class in net.imglib2
Abstract base class for localizing Cursors.
AbstractLocalizingCursorInt(int) - Constructor for class net.imglib2.AbstractLocalizingCursorInt
 
AbstractLongArray<A extends AbstractLongArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
AbstractLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
AbstractLongArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractLongArrayIo
 
AbstractLongListImg<T> - Class in net.imglib2.img.list
Abstract base class for Img that store pixels in a single linear list addressed by a long.
AbstractLongListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractLongListImg
 
AbstractLongListImg.LongListCursor - Class in net.imglib2.img.list
 
AbstractLongListImg.LongListLocalizingCursor - Class in net.imglib2.img.list
 
AbstractLongListImg.LongListRandomAccess - Class in net.imglib2.img.list
 
AbstractMixedTransform - Class in net.imglib2.transform.integer
TODO
AbstractMixedTransform(int) - Constructor for class net.imglib2.transform.integer.AbstractMixedTransform
 
AbstractMultiThreadedConvolution<T> - Class in net.imglib2.algorithm.convolution
Deprecated.
AbstractMultiThreadedConvolution() - Constructor for class net.imglib2.algorithm.convolution.AbstractMultiThreadedConvolution
Deprecated.
 
AbstractNativeImg<T extends NativeType<T>,A> - Class in net.imglib2.img
TODO
AbstractNativeImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeImg
 
AbstractNativeLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
AbstractNativeLabeling(long[], LabelingROIStrategyFactory<T>, LabelingMapping<T>) - Constructor for class net.imglib2.labeling.AbstractNativeLabeling
Deprecated.
 
AbstractNativeLongAccessImg<T extends NativeLongAccessType<T>,A> - Class in net.imglib2.img
TODO
AbstractNativeLongAccessImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeLongAccessImg
 
AbstractNativeLongAccessType<T extends AbstractNativeLongAccessType<T>> - Class in net.imglib2.type
 
AbstractNativeLongAccessType() - Constructor for class net.imglib2.type.AbstractNativeLongAccessType
 
AbstractNativeType<T extends AbstractNativeType<T>> - Class in net.imglib2.type
TODO
AbstractNativeType() - Constructor for class net.imglib2.type.AbstractNativeType
 
AbstractNeighborhood<T> - Class in net.imglib2.algorithm.region.localneighborhood
A Positionable IterableInterval that serves as a local neighborhood, e.g.
AbstractNeighborhood(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
AbstractNeighborhoodCursor<T> - Class in net.imglib2.algorithm.region.localneighborhood
 
AbstractNeighborhoodCursor(AbstractNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
AbstractNumericComposite<T extends NumericType<T>,C extends AbstractNumericComposite<T,C>> - Class in net.imglib2.view.composite
Abstract base class for a vector of NumericType scalars.
AbstractNumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.AbstractNumericComposite
 
AbstractOutOfBoundsMirror<T> - Class in net.imglib2.outofbounds
Abstract implementation of shared functions for mirroring out of bounds.
AbstractOutOfBoundsMirror(AbstractOutOfBoundsMirror<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
AbstractOutOfBoundsMirror(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
AbstractOutOfBoundsValue<T> - Class in net.imglib2.outofbounds
 
AbstractOutOfBoundsValue(AbstractOutOfBoundsValue<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
AbstractOutOfBoundsValue(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
AbstractOwningUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
AbstractOwningUnsafe(UnsafeUtil.OwningUnsafe) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.AbstractOwningUnsafe
 
AbstractPermutationTransform - Class in net.imglib2.transform.integer.permutation
Bijective integer transform mapping between integer coordinates in [0,n-1].
AbstractPermutationTransform(int[]) - Constructor for class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
AbstractPositionableTransform<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to somehow derived discrete coordinates.
AbstractPositionableTransform(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.AbstractPositionableTransform
 
AbstractProjector2D - Class in net.imglib2.display.projector
Base class for 2D projectors.
AbstractProjector2D(int) - Constructor for class net.imglib2.display.projector.AbstractProjector2D
initializes a reference point with the specified number of dimensions.
AbstractRealInterval - Class in net.imglib2
Implementation of the RealInterval interface.
AbstractRealInterval(int) - Constructor for class net.imglib2.AbstractRealInterval
Creates an n-dimensional AbstractInterval with min and max = 0n.
AbstractRealInterval(RealInterval) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval using an existing RealInterval
AbstractRealInterval(double[], double[], boolean) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval from min and max coordinates
AbstractRealInterval(double[], double[]) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval from min and max coordinates
AbstractRealInterval(RealLocalizable, RealLocalizable) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval from min and max coordinates
AbstractRealLocalizable - Class in net.imglib2
An abstract class that implements the RealLocalizable interface using an array of doubles to maintain position
AbstractRealLocalizable(int) - Constructor for class net.imglib2.AbstractRealLocalizable
 
AbstractRealLocalizable(double[]) - Constructor for class net.imglib2.AbstractRealLocalizable
Protected constructor that re-uses the passed position array.
AbstractRealMaskPoint - Class in net.imglib2.roi.util
 
AbstractRealMaskPoint(int) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
 
AbstractRealMaskPoint(double[]) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
 
AbstractRealMaskPoint(RealLocalizable) - Constructor for class net.imglib2.roi.util.AbstractRealMaskPoint
 
AbstractRealTransformSequence<R extends RealTransform> - Class in net.imglib2.realtransform
Shared properties of RealTransformSequence and InvertibleRealTransformSequence, sequences of something that extends RealTransforms.
AbstractRealTransformSequence() - Constructor for class net.imglib2.realtransform.AbstractRealTransformSequence
 
AbstractRealType<T extends AbstractRealType<T>> - Class in net.imglib2.type.numeric.real
TODO
AbstractRealType() - Constructor for class net.imglib2.type.numeric.real.AbstractRealType
 
AbstractRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AbstractRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
AbstractRegionOfInterest.AROIRandomAccess - Class in net.imglib2.roi
Deprecated.
The AROIRandomAccess inner class implements the random access part of the ROI, allowing random sampling of pixel membership in the ROI.
AbstractScale - Class in net.imglib2.realtransform
n-d arbitrary scaling.
AbstractScale(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractScale
 
AbstractScale(double...) - Constructor for class net.imglib2.realtransform.AbstractScale
 
AbstractShearTransform - Class in net.imglib2.transform.integer.shear
Most simple case of a shear transform that just implements for a integer valued coordinate: coordinate[ shearDimension ] += coordinate[ referenceDimension ] (forward) coordinate[ shearDimension ] -= coordinate[ referenceDimension ] (backward) This abstract class holds the inverse and implements applyInverse in terms of inverse.apply
AbstractShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
 
AbstractShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
 
AbstractShortArray<A extends AbstractShortArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
AbstractShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
AbstractShortArrayIo() - Constructor for class net.imglib2.cache.img.AccessIo.AbstractShortArrayIo
 
AbstractStridedUnsafeLongAccess - Class in net.imglib2.img.basictypelongaccess.unsafe
 
AbstractStridedUnsafeLongAccess(int, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.AbstractStridedUnsafeLongAccess
 
AbstractTranslation - Class in net.imglib2.realtransform
n-d translation.
AbstractTranslation(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractTranslation(int) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractTranslation(double...) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractUncheckedVolatileCache<K,V> - Interface in net.imglib2.cache.volatiles
 
AbstractUnsafeCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
AbstractUnsafeCursor(AbstractUnsafeCursor<T>) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeCursor
TODO Javadoc
AbstractUnsafeCursor(UnsafeImg<T, ?>, long, long) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeCursor
TODO Javadoc
AbstractUnsafeLocalizingCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
Localizing Cursor on an UnsafeImg.
AbstractUnsafeLocalizingCursor(AbstractUnsafeLocalizingCursor<T>) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
TODO Javadoc
AbstractUnsafeLocalizingCursor(UnsafeImg<T, ?>, long, long) - Constructor for class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
TODO Javadoc
AbstractVirtualStack - Class in net.imglib2.img.display.imagej
Abstract class to simplify the implementation of an VirtualStack.
AbstractVirtualStack(int, int, int, int) - Constructor for class net.imglib2.img.display.imagej.AbstractVirtualStack
 
AbstractVolatileBooleanArray<A extends AbstractVolatileBooleanArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileBooleanArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray
 
AbstractVolatileBooleanArray(boolean[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray
 
AbstractVolatileByteArray<A extends AbstractVolatileByteArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
AbstractVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
AbstractVolatileCache<K,V> - Interface in net.imglib2.cache.volatiles
 
AbstractVolatileCharArray<A extends AbstractVolatileCharArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
AbstractVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
AbstractVolatileDoubleArray<A extends AbstractVolatileDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
AbstractVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
AbstractVolatileFloatArray<A extends AbstractVolatileFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
AbstractVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
AbstractVolatileIntArray<A extends AbstractVolatileIntArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
AbstractVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
AbstractVolatileLongArray<A extends AbstractVolatileLongArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
AbstractVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
AbstractVolatileNativeNumericType<N extends NumericType<N> & NativeType<N>,T extends AbstractVolatileNativeNumericType<N,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileNumericTypes that wrap native NumericTypes.
AbstractVolatileNativeNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNativeNumericType
 
AbstractVolatileNativeRealType<R extends RealType<R> & NativeType<R>,T extends AbstractVolatileNativeRealType<R,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileRealTypes that wrap native RealTypes.
AbstractVolatileNativeRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNativeRealType
 
AbstractVolatileNumericType<N extends NumericType<N>,T extends AbstractVolatileNumericType<N,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileNumericTypes that wrap a NumericType that is either VALID or INVALID.
AbstractVolatileNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
AbstractVolatileNumericType(N) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
AbstractVolatileRealType<R extends RealType<R>,T extends AbstractVolatileRealType<R,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileRealTypes that wrap RealType.
AbstractVolatileRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileRealType
 
AbstractVolatileShortArray<A extends AbstractVolatileShortArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
AbstractVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
AbstractWrappedInterval<I extends Interval> - Class in net.imglib2
Convenient base class for IterableIntervals, RandomAccessibleIntervals, etc that forward the Interval interface to, for example, their source accessible.
AbstractWrappedInterval(I) - Constructor for class net.imglib2.AbstractWrappedInterval
 
AbstractWrappedLocalizable<L extends Localizable> - Class in net.imglib2
Convenient base class for accessors etc, that source all Localizable calls to a Localizable source.
AbstractWrappedLocalizable(L) - Constructor for class net.imglib2.AbstractWrappedLocalizable
 
AbstractWrappedPositionableLocalizable<P extends Positionable & Localizable> - Class in net.imglib2
Convenient base class for accessors etc, that source all Localizable and Positionable calls to a Localizable & Positionable source.
AbstractWrappedPositionableLocalizable(P) - Constructor for class net.imglib2.AbstractWrappedPositionableLocalizable
 
AbstractWrappedRealInterval<I extends RealInterval> - Class in net.imglib2
Convenient base class for IterableRealIntervals, etc that forward the RealInterval interface to, for example, their source accessible.
AbstractWrappedRealInterval(I) - Constructor for class net.imglib2.AbstractWrappedRealInterval
 
AbstractWritableBox - Class in net.imglib2.roi.geom.real
Abstract base class for implementations of WritableBox.
AbstractWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableBox
Creates an n-d rectangular RealMask.
AbstractWritableEllipsoid - Class in net.imglib2.roi.geom.real
Abstract base class for WritableEllipsoid implementations.
AbstractWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableEllipsoid
Creates an n-d ellipsoid, where n is determined by the length of the smaller array.
AbstractWritableSphere - Class in net.imglib2.roi.geom.real
Abstract base class for WritableSphere implementations.
AbstractWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableSphere
Creates an n-d sphere.
AbstractWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real
Abstract base class for WritableSuperEllipsoid implementations.
AbstractWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
Creates an n-d superellipsoid, where n is determined by the length of the smaller array.
acc - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
acc - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
accA - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
accA - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accB - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
accB - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accept(RandomAccessibleInterval<S>) - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
accept(T, U) - Method in interface net.imglib2.algorithm.fill.Filter
Deprecated.
 
accept(T) - Method in interface net.imglib2.algorithm.tree.TreeUtils.Consumer
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.FiveCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.FourCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.OneCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.SixCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.ThreeCursorLoop
 
accept(long) - Method in class net.imglib2.loops.FastCursorLoops.TwoCursorLoop
 
accept(A, B, C, D, E) - Method in interface net.imglib2.loops.LoopBuilder.FiveConsumer
 
accept(A, B, C, D) - Method in interface net.imglib2.loops.LoopBuilder.FourConsumer
 
accept(A, B, C, D, E, F) - Method in interface net.imglib2.loops.LoopBuilder.SixConsumer
 
accept(A, B, C) - Method in interface net.imglib2.loops.LoopBuilder.TriConsumer
 
acceptUnpadded(RandomAccessibleInterval<S>) - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition
Compute coefficients.
accessAxes - Variable in class net.imglib2.view.HyperSlicesView
 
Accesses - Interface in net.imglib2.img.basictypeaccess
Utility and helper methods for accesses (ByteAccess etc).
accessFlags() - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions.Values
 
accessFlags() - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions.Values
 
AccessFlags - Enum in net.imglib2.img.basictypeaccess
Flags that specify variants of ArrayDataAccess underlying primitive types.
AccessIo<A> - Interface in net.imglib2.cache.img
Serialize/deserialize an access to/from a ByteBuffer.
AccessIo.AbstractByteArrayIo<A extends AbstractByteArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractCharArrayIo<A extends AbstractCharArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractDoubleArrayIo<A extends AbstractDoubleArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractFloatArrayIo<A extends AbstractFloatArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractIntArrayIo<A extends AbstractIntArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractLongArrayIo<A extends AbstractLongArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.AbstractShortArrayIo<A extends AbstractShortArray<A>> - Class in net.imglib2.cache.img
 
AccessIo.ByteArrayType - Class in net.imglib2.cache.img
 
AccessIo.CharArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyByteArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyCharArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyDoubleArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyFloatArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyIntArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyLongArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyShortArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileByteArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileCharArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileDoubleArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileFloatArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileIntArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileLongArrayType - Class in net.imglib2.cache.img
 
AccessIo.DirtyVolatileShortArrayType - Class in net.imglib2.cache.img
 
AccessIo.DoubleArrayType - Class in net.imglib2.cache.img
 
AccessIo.FloatArrayType - Class in net.imglib2.cache.img
 
AccessIo.IntArrayType - Class in net.imglib2.cache.img
 
AccessIo.LongArrayType - Class in net.imglib2.cache.img
 
AccessIo.ShortArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileByteArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileCharArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileDoubleArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileFloatArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileIntArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileLongArrayType - Class in net.imglib2.cache.img
 
AccessIo.VolatileShortArrayType - Class in net.imglib2.cache.img
 
AccessOptions<T> - Interface in net.imglib2.cache.img.optional
Optional arguments that specify whether accesses should be dirty (default false) volatile (default true)
AccessOptions.Val - Interface in net.imglib2.cache.img.optional
 
accG - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
accG - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accR - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
accR - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accumulate(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
accumulator - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
Add - Class in net.imglib2.algorithm.math
 
Add(Object, Object) - Constructor for class net.imglib2.algorithm.math.Add
 
Add(Object...) - Constructor for class net.imglib2.algorithm.math.Add
 
add(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
add(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
add(RandomAccessible<T>, Localizable, long, T) - Static method in class net.imglib2.algorithm.region.Circles
Writes a circle in the target RandomAccessible.
add(RandomAccessible<T>, Localizable, long, int, int, T) - Static method in class net.imglib2.algorithm.region.Circles
Writes a circle in the target RandomAccessible.
add(RandomAccessible<T>, Localizable, long, long, T) - Static method in class net.imglib2.algorithm.region.Ellipses
Writes an ellipse in the target RandomAccessible.
add(RandomAccessible<T>, Localizable, long, long, int, int, T) - Static method in class net.imglib2.algorithm.region.Ellipses
Writes an ellipse in the target RandomAccessible.
add(T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
add(int, T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
add(Point, T) - Method in class net.imglib2.PointSampleList
 
add(RealPoint, T) - Method in class net.imglib2.RealPointSampleList
 
add(R) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
Append a RealTransform to the sequence.
add(T) - Method in class net.imglib2.roi.labeling.LabelingType
 
add(Localizable) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
Accumulate the given coordinates.
add(BitType) - Method in class net.imglib2.type.logic.BitType
 
add(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
add(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
add(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
add(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
add(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
add(ComplexFloatLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
add(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
add(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
add(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
add(UnsignedByteLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
add(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
add(UnsignedIntLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
add(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
add(UnsignedLongLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
add(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
add(UnsignedShortLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
add(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
add(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
add(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
add(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
Add<T> - Interface in net.imglib2.type.operators
 
add(T) - Method in interface net.imglib2.type.operators.Add
 
add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
add(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = a + b.
add(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A + B.
add(double) - Method in class net.imglib2.util.RealSum
Add an element to the sum.
add(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
addAll(Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
addAll(int, Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
addAll(Collection<? extends T>) - Method in class net.imglib2.roi.labeling.LabelingType
 
addData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Counts additional data contained in a given iterable collection.
addData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts additional data contained in a given iterable collection.
addData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts additional data contained in a given iterable collection.
addDeleteHook(Path) - Static method in class net.imglib2.cache.img.DiskCellCache
Register a path for deletion when the virtual machine shuts down.
addDimension(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews
Add a dimension to a RealRandomAccessible.
addDimension(Interval, long, long) - Static method in class net.imglib2.util.Intervals
Create new interval by adding a dimension to the source Interval.
addDimension(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
Create view which adds a dimension to the source RandomAccessible .
addDimension(RandomAccessibleInterval<T>, long, long) - Static method in class net.imglib2.view.Views
Create view which adds a dimension to the source RandomAccessibleInterval.
addDimension(int) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.addDimension(RandomAccessible).
addEllipticGaussianSpotToImage(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
addGaussianNoiseToImage(RandomAccessibleInterval<T>, double) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
addGaussianSpotToImage(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
Addition<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Addition(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Addition
 
addPoint(L) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
 
addPoint(L) - Method in class net.imglib2.roi.geom.real.RealPointSampleListWritableRealPointCollection
 
addPoint(L) - Method in interface net.imglib2.roi.geom.real.WritableRealPointCollection
Adds a point to the collection.
addPosition(Localizable) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent
Add a pixel to the set of pixels represented by this component.
addPosition(Localizable) - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
Append a pixel location to the list.
addSlice(String) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addSlice(String, Object) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addSlice(String, ImageProcessor) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addSlice(String, ImageProcessor, int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addSlice(ImageProcessor) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addUnsignedShortSlice(String, Object) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
If the given vertex has more than 2 dimensions, the higher dimensions will be ignored.
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
addVertex(int, double[]) - Method in interface net.imglib2.roi.geom.real.WritablePolygon2D
addVertex(int, RealLocalizable) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape
Adds a vertex at the given index.
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Insert a point into the polygon at the given index
addVertices(int, Collection<RealLocalizable>) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
 
addVertices(int, Collection<RealLocalizable>) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
addVertices(int, Collection<RealLocalizable>) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape
Adds vertices starting at the given index.
affine(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews
See a RealRandomAccessible as a RandomAccessible transformed by an AffineGet.
AffineGet - Interface in net.imglib2.realtransform
An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be accessed via row and column index.
AffineMatrix2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
AffineMatrix3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
AffineMatrix3D(double...) - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
AffineRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
AffineRandomAccess(AffineRandomAccessible<T, R>.AffineRandomAccess) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
AffineRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform
A RandomAccessible whose samples are generated by rasterizing a RealRandomAccessible transformed by an affine transformation.
AffineRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible
 
AffineRandomAccessible.AffineRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.
affineReal(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews
See a RealRandomAccessible as transformed by an AffineGet .
AffineRealRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
AffineRealRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform
A RealRandomAccessible whose samples are generated from a RealRandomAccessible transformed by an affine transformation.
AffineRealRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible
 
AffineRealRandomAccessible.AffineRealRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.
AffineSet - Interface in net.imglib2.realtransform
An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be set via row and column index and from double arrays.
AffineTransform - Class in net.imglib2.realtransform
An n-dimensional affine transformation.
AffineTransform(int) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(double...) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(AffineTransform) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform2D - Class in net.imglib2.realtransform
2d-affine transformation.
AffineTransform2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D(AffineTransform2D.AffineMatrix2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D(AffineTransform2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D.AffineMatrix2D - Class in net.imglib2.realtransform
 
AffineTransform3D - Class in net.imglib2.realtransform
3d-affine transformation.
AffineTransform3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D(AffineTransform3D.AffineMatrix3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D(AffineTransform3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D.AffineMatrix3D - Class in net.imglib2.realtransform
 
age - Variable in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
Algorithm - Interface in net.imglib2.algorithm
TODO This interface should extend Runnable
AllConnectedComponents - Class in net.imglib2.algorithm.labeling
Deprecated.
AllConnectedComponents() - Constructor for class net.imglib2.algorithm.labeling.AllConnectedComponents
Deprecated.
 
AllConnectedComponents.PositionStack - Class in net.imglib2.algorithm.labeling
Deprecated.
 
allDone - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
allMask(int) - Static method in class net.imglib2.roi.Masks
Creates a Mask which returns true for all locations.
allMatch(Predicate<T>, List<T>) - Static method in class net.imglib2.loops.ListUtils
 
allMatch(Predicate<T>, T[]) - Static method in class net.imglib2.loops.ListUtils
 
allowedToMoveInDim - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
allowMaximaTolerance - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
allPositive(long...) - Static method in interface net.imglib2.Dimensions
Check whether all entries in dimensions are positive
allPositive(int...) - Static method in interface net.imglib2.Dimensions
Check whether all entries in dimensions are positive
allRealMask(int) - Static method in class net.imglib2.roi.Masks
Creates a RealMask which returns true for all locations.
ALPHA - Static variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
ALPHA - Static variable in interface net.imglib2.display.ColorTable
 
alpha - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
alpha(int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
alpha(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
AND(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
AND(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
and(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
 
AND - Static variable in class net.imglib2.roi.Bounds
 
and(B) - Method in class net.imglib2.roi.Bounds
 
and(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Make the region the union of the current and this
and(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
 
and(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.MaskInterval
 
and(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
 
and(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
 
and(MaskInterval, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
 
and(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
 
and(RealMaskRealInterval, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
 
AND - Static variable in class net.imglib2.roi.Operators
 
and(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
 
and(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
and(T) - Method in interface net.imglib2.type.BooleanType
 
and(BitType) - Method in class net.imglib2.type.logic.BitType
 
and(boolean) - Method in class net.imglib2.type.logic.BoolType
 
and(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
and(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
AndLogical - Class in net.imglib2.algorithm.math
 
AndLogical(Object, Object) - Constructor for class net.imglib2.algorithm.math.AndLogical
 
AndLogical(Object...) - Constructor for class net.imglib2.algorithm.math.AndLogical
 
angleFromR(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the angle of rotation from a rotation matrix.
AngleRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AngleRegionOfInterest() - Constructor for class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
AngleRegionOfInterest(double[], double[], double[]) - Constructor for class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
anyMatch(Predicate<T>, T[]) - Static method in class net.imglib2.loops.ListUtils
 
append(DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions
 
append(ReadOnlyCachedCellImgOptions) - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions
 
apply(long[]) - Method in class net.imglib2.algorithm.util.Grids.CreateAndCropBlockToFitInterval
 
apply(long[]) - Method in class net.imglib2.algorithm.util.Grids.GetGridCoordinates
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Deprecated.
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform
Deprecated.
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InverseRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.PositionFieldTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.PositionFieldTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PositionFieldTransform
 
apply(double[], double[]) - Method in interface net.imglib2.realtransform.RealTransform
Apply the RealTransform to a source vector to obtain a target vector.
apply(float[], float[]) - Method in interface net.imglib2.realtransform.RealTransform
Deprecated.
use double precision instead
apply(RealLocalizable, RealPositionable) - Method in interface net.imglib2.realtransform.RealTransform
Apply the RealTransform to a source RealLocalizable to obtain a target RealPositionable.
apply() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
apply() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation3D
 
apply(B, B) - Method in interface net.imglib2.roi.Bounds.BinaryBoundsOperator
 
apply(B) - Method in interface net.imglib2.roi.Bounds.UnaryBoundsOperator
 
apply(Predicate<? super Localizable>, Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
apply(Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.InverseTransform
 
apply(long[], long[]) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source vector to obtain a target vector.
apply(int[], int[]) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source vector to obtain a target vector.
apply(Localizable, Positionable) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source Localizable to obtain a target Positionable.
applyChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyInterval(Predicate<? super Localizable>, Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
applyInterval(Predicate<? super Localizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform
Deprecated.
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InverseRealTransform
 
applyInverse(double[], double[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(float[], float[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Deprecated.
Use double precision instead
applyInverse(RealPositionable, RealLocalizable) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Apply the inverse transform to a target RealLocalizable to obtain a source RealPositionable.
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(long[], long[]) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(int[], int[]) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(Positionable, Localizable) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target Localizable to obtain a source Positionable.
applyInverseChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyReal(Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
applyReal(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
 
applyReal(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
applyRealInterval(Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
applyRealInterval(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
 
applyRealInterval(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
applyTaskExecutorToThreadFactory(Supplier<TaskExecutor>, ThreadFactory) - Static method in class net.imglib2.parallel.TaskExecutors
Returns a ThreadFactory.
arg0() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
 
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
arg0() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
arg0() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
arg0() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
arg0() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
arg0() - Method in interface net.imglib2.roi.composite.UnaryCompositeMaskPredicate
 
arg1() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
 
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
arg1() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
argb(int) - Method in class net.imglib2.display.AbstractArrayColorTable
 
argb(int) - Method in interface net.imglib2.display.ArrayColorTable
Converts the tuple at the given position into a packed ARGB value.
ARGB_COLOR_MODEL - Static variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
ARGBARGBDoubleConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter
 
ARGBARGBDoubleConverter() - Constructor for class net.imglib2.converter.ARGBARGBDoubleConverter
 
argbChannel(RandomAccessibleInterval<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
Create a WriteConvertedRandomAccessibleInterval to one of the four channels encoded in a RandomAccessibleInterval of ARGBType.
argbChannel(RandomAccessible<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
Create a WriteConvertedRandomAccessible to one of the four channels encoded in a RandomAccessible of ARGBType.
argbChannels(RandomAccessibleInterval<ARGBType>) - Static method in class net.imglib2.converter.Converters
Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.
argbChannels(RandomAccessibleInterval<ARGBType>, int...) - Static method in class net.imglib2.converter.Converters
Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.
ARGBChannelSamplerConverter - Class in net.imglib2.converter.readwrite
Access the on channel of an ARGBType as an UnsignedByteType.
ARGBChannelSamplerConverter(int) - Constructor for class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
 
ARGBConverter - Class in net.imglib2.converter.longaccess
 
ARGBConverter() - Constructor for class net.imglib2.converter.longaccess.ARGBConverter
 
ARGBDoubleARGBConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter
 
ARGBDoubleARGBConverter() - Constructor for class net.imglib2.converter.ARGBDoubleARGBConverter
 
ARGBDoubleType - Class in net.imglib2.type.numeric
 
ARGBDoubleType() - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
 
ARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
 
ARGBLongAccessType - Class in net.imglib2.type.numeric
 
ARGBLongAccessType(NativeLongAccessImg<?, ? extends IntLongAccess>) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType
 
ARGBLongAccessType(int) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType
 
ARGBLongAccessType(IntLongAccess) - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType
 
ARGBLongAccessType() - Constructor for class net.imglib2.type.numeric.ARGBLongAccessType
 
ARGBLongAccessTypeARGBTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ARGBLongAccessTypeARGBTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter
 
ARGBLongAccessTypeARGBTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
argbs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
argbs(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ARGBType, IntArray> reusing a passed int[] array.
argbs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ARGBType, IntAccess> using a IntAccess passed as argument.
argbs(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
argbs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
argbs(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
argbs(IntLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<ARGBType, IntArray> reusing a passed int[] array.
ARGBScreenImage - Class in net.imglib2.display.screenimage.awt
 
ARGBScreenImage(int, int) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
ARGBScreenImage(int, int, IntArray) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
Create an Image with data.
ARGBScreenImage(int, int, int[]) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
Create an Image with data.
ARGBType - Class in net.imglib2.type.numeric
A native NumericType that encodes four channels at unsigned byte precision into one 32bit signed integer which is the format used in most display oriented image processing libraries such as AWT or ImageJ.
ARGBType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(int) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(IntAccess) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType() - Constructor for class net.imglib2.type.numeric.ARGBType
 
armijoCondition(double, double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Returns true if the armijo condition is satisfied.
AROIClippedIterableInterval(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
AROICursor(AbstractIterableRegionOfInterest.AROIIterableInterval<T>.AROICursor) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
AROICursor() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
AROIIterableInterval(RandomAccessible<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
AROIIterationOrder() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterationOrder
Deprecated.
 
AROIRandomAccess(AbstractRegionOfInterest.AROIRandomAccess) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
AROIRandomAccess() - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
ArrayColorTable<T> - Interface in net.imglib2.display
Interface for all ColorTable implementations that use an array to store their color table information.
ArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayCursor(ArrayCursor<T>) - Constructor for class net.imglib2.img.array.ArrayCursor
 
ArrayCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayCursor
 
ArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.array
Trivial interface for primitive array based data access implementations that can replicate themselves and return the underlying array.
ArrayDataAccessFactory - Class in net.imglib2.img.basictypeaccess
Given a PrimitiveType and AccessFlags creates a specific ArrayDataAccess.
ArrayDataAccessFactory() - Constructor for class net.imglib2.img.basictypeaccess.ArrayDataAccessFactory
 
ArrayImg<T extends NativeType<T>,A> - Class in net.imglib2.img.array
This Img stores an image in a single linear array of basic types.
ArrayImg(A, long[], Fraction) - Constructor for class net.imglib2.img.array.ArrayImg
 
ArrayImgAWTScreenImage<T extends NativeType<T>,A> - Class in net.imglib2.display.screenimage.awt
An AWTScreenImage that is an ArrayImg.
ArrayImgAWTScreenImage(ArrayImg<T, A>) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
ArrayImgAWTScreenImage(T, A, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
ArrayImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.array
Factory for ArrayImgs.
ArrayImgFactory(T) - Constructor for class net.imglib2.img.array.ArrayImgFactory
 
ArrayImgFactory() - Constructor for class net.imglib2.img.array.ArrayImgFactory
Deprecated.
ArrayImgs - Class in net.imglib2.img.array
Convenience factory methods for creation of ArrayImg instances with the most common pixel Type variants.
ArrayImgToVirtualStack - Class in net.imglib2.img.display.imagej
 
ArrayImgXYByteProjector<A extends GenericByteType<A>> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ByteType ArrayImg.
ArrayImgXYByteProjector(ArrayImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector
Normalizes an ArrayImg and writes the result into target.
ArrayImgXYShortProjector<A extends GenericShortType<A>> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ShortType ArrayImg.
ArrayImgXYShortProjector(ArrayImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector
Normalizes an ArrayImg and writes the result into target.
ArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
Localizing Cursor on an ArrayImg.
ArrayLocalizingCursor(ArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
TODO Javadoc
ArrayLocalizingCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
TODO Javadoc
ArrayLocalizingSubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayLocalizingSubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
TODO Javadoc
ArrayLocalizingSubIntervalCursor(ArrayLocalizingSubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
TODO Javadoc
ArrayRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayRandomAccess(ArrayRandomAccess<T>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
 
ArrayRandomAccess(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
 
ArraySubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArraySubIntervalCursor(ArraySubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
TODO Javadoc
ArraySubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
TODO Javadoc
asArrayAccess(long, int, boolean, PrimitiveType) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asByteArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asCharArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asDoubleArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asDoubleArray(Iterable<? extends RealType<?>>) - Static method in class net.imglib2.util.Util
Returns the content of Iterable<RealType> as array of doubles.
asDoubleArray(RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.util.Util
Returns the pixels of an RandomAccessibleInterval of RealType as array of doubles.
asDoubleArray(Img<? extends RealType<?>>) - Static method in class net.imglib2.util.Util
Returns the pixels of an image of RealType as array of doubles.
asFloatArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asIntArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asLongArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asLongArray(Localizable) - Static method in class net.imglib2.util.Localizables
assertImageEquals(RandomAccessibleInterval<? extends A>, RandomAccessibleInterval<? extends B>) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the content or intervals of the two images differ.
assertImageEquals(RandomAccessibleInterval<? extends A>, RandomAccessibleInterval<? extends B>, BiPredicate<A, B>) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the content or intervals of the two images differ.
assertImageEqualsIntegerType(RandomAccessibleInterval<? extends IntegerType<?>>, RandomAccessibleInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the content or intervals of the two images differ.
assertImageEqualsRealType(RandomAccessibleInterval<? extends RealType<?>>, RandomAccessibleInterval<? extends RealType<?>>, double) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the content or intervals of the two images differ.
assertIntervalEquals(Interval, Interval) - Static method in class net.imglib2.test.ImgLib2Assert
Throws an AssertionError, if the two Intervals differ.
assertIntervalEquals(RealInterval, RealInterval, double) - Static method in class net.imglib2.test.ImgLib2Assert
 
asShortArray(long, int, boolean) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
asymmetric(double[], int) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Creates a one-dimensional asymmetric convolution kernel.
asymmetric(double[][], int[]) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Similar to Kernel1D.asymmetric(double[], int) but creates an array of one-dimensional convolution kernels.
ATrinaryFunction - Class in net.imglib2.algorithm.math.abstractions
 
ATrinaryFunction(Object, Object, Object) - Constructor for class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
AUnaryFunction - Class in net.imglib2.algorithm.math.abstractions
 
AUnaryFunction(Object) - Constructor for class net.imglib2.algorithm.math.abstractions.AUnaryFunction
 
average(float[]) - Static method in class net.imglib2.util.Util
 
average(double[]) - Static method in class net.imglib2.util.Util
 
averageDouble(List<Double>) - Static method in class net.imglib2.util.Util
 
averageFloat(List<Float>) - Static method in class net.imglib2.util.Util
 
awaitTermination(long, TimeUnit) - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
awaitTermination(long, TimeUnit) - Method in class net.imglib2.parallel.SequentialExecutorService
 
AWTScreenImage - Interface in net.imglib2.display.screenimage.awt
A ScreenImage that produces AWT Image objects.
AWTScreenImageUtil - Class in net.imglib2.display.screenimage.awt
Utility class to create AWTScreenImages.
AWTScreenImageUtil() - Constructor for class net.imglib2.display.screenimage.awt.AWTScreenImageUtil
 
axes - Variable in class net.imglib2.view.HyperSlice
 
axisFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the axis of rotation from a rotation matrix.

B

b - Variable in class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
b - Variable in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
b - Variable in class net.imglib2.algorithm.math.execution.Comparison
 
b - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
b - Variable in class net.imglib2.util.ValuePair
 
b - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
background - Variable in class net.imglib2.converter.VolatileRealTypeARGBConverter
 
BacktrackingLineSearch - Class in net.imglib2.realtransform.inverse
A generic backtracking line search to iteratively estimate the inverse of a RealTransform.
BacktrackingLineSearch(int) - Constructor for class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
BacktrackingLineSearch(DifferentiableRealTransform) - Constructor for class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
backtrackingLineSearch(double, double, int, double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
Perform backtracking line search.
backtrackingLineSearch(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Uses Backtracking Line search to determine a step size.
backtrackingLineSearch(double, double, int, double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Uses Backtracking Line search to determine a step size.
Bandpass<T extends NumericType<T>> - Class in net.imglib2.algorithm.fft
Deprecated.
use FFT instead
Bandpass(RandomAccessibleInterval<T>, int, int, ImgFactory<T>) - Constructor for class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
Bandpass(Img<T>, int, int) - Constructor for class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
BasePairBitType - Class in net.imglib2.type.label
Representation of base pairs using 3 bits per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.
BasePairBitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType() - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType.Base - Enum in net.imglib2.type.label
 
BasePairCharType - Class in net.imglib2.type.label
Representation of base pairs using one char per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.
BasePairCharType(NativeImg<?, ? extends CharAccess>) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(char) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType() - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairType<T extends BasePairType<T>> - Interface in net.imglib2.type
TODO
baseToValue() - Method in interface net.imglib2.type.BasePairType
 
baseToValue() - Method in class net.imglib2.type.label.BasePairBitType
 
baseToValue() - Method in class net.imglib2.type.label.BasePairCharType
 
bck(int) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
bck(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
bck(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
bck(int) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
bck(int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
bck(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
bck(int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
bck(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
bck(int) - Method in class net.imglib2.img.list.ListRandomAccess
 
bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
bck(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
bck(int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
bck(int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
bck(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
bck(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
bck(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
bck(int) - Method in class net.imglib2.Point
 
bck(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
bck(int) - Method in interface net.imglib2.Positionable
Move by -1 in one dimension.
bck(int) - Method in class net.imglib2.RealPoint
 
bck(int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
bck(int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
bck(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
bck(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
bck(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
bck(int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
bck(int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
bck(int) - Method in class net.imglib2.roi.util.PositionableInterval
 
bck(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
bck(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
bck(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
bck(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
bck(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
bck(int) - Method in class net.imglib2.view.MixedRandomAccess
 
bck(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
bck(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
bck(int) - Method in class net.imglib2.view.SlicingRandomAccess
 
bck(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
bck(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
bck(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
bck(int) - Method in class net.imglib2.view.TransformRandomAccess
 
bck(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
bckDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves one step backward in dimension 0
bckDim0() - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
Moves one step backward in dimension 0
beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
Benchmark - Interface in net.imglib2.algorithm
TODO
benchmark(int, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
Run a benchmark numRuns times and record the milliseconds taken for each run.
BenchmarkAlgorithm - Class in net.imglib2.algorithm
This is a convenience implementation of an algorithm that implements Benchmark and Algorithm so that less code has to be re-implemented.
BenchmarkAlgorithm() - Constructor for class net.imglib2.algorithm.BenchmarkAlgorithm
 
benchmarkAndPrint(int, boolean, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
Run a benchmark numRuns times and print the results to System.out .
BenchmarkHelper - Class in net.imglib2.util
Tools for setting up basic benchmarks.
BenchmarkHelper() - Constructor for class net.imglib2.util.BenchmarkHelper
 
bestPoint - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
bestPoints - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
bestSquDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
bestSquDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
BiConvertedCursor<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedCursor(Cursor<A>, Cursor<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedCursor
Creates a copy of c for conversion that can be accessed through BiConvertedCursor.get().
BiConvertedCursor(Cursor<A>, Cursor<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedCursor
Creates a copy of c for conversion that can be accessed through BiConvertedCursor.get().
BiConvertedIterableInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedIterableInterval(IterableInterval<A>, IterableInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableInterval
Creates a copy of c for conversion.
BiConvertedIterableInterval(IterableInterval<A>, IterableInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableInterval
Creates a copy of c for conversion.
BiConvertedIterableRealInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedIterableRealInterval(IterableRealInterval<A>, IterableRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableRealInterval
Creates a copy of c for conversion.
BiConvertedIterableRealInterval(IterableRealInterval<A>, IterableRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedIterableRealInterval
Creates a copy of c for conversion.
BiConvertedRandomAccess<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRandomAccess(RandomAccess<A>, RandomAccess<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccess
 
BiConvertedRandomAccess(RandomAccess<A>, RandomAccess<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccess
 
BiConvertedRandomAccessible<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRandomAccessible(RandomAccessible<A>, RandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessible
 
BiConvertedRandomAccessible(RandomAccessible<A>, RandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessible
 
BiConvertedRandomAccessibleInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
BiConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
BiConvertedRealCursor<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRealCursor(RealCursor<A>, RealCursor<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealCursor
Creates a copy of c for conversion that can be accessed through BiConvertedRealCursor.get().
BiConvertedRealCursor(RealCursor<A>, RealCursor<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealCursor
Creates a copy of c for conversion that can be accessed through BiConvertedRealCursor.get().
BiConvertedRealRandomAccess<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRealRandomAccess(RealRandomAccess<A>, RealRandomAccess<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
BiConvertedRealRandomAccess(RealRandomAccess<A>, RealRandomAccess<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
BiConvertedRealRandomAccessible<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRealRandomAccessible(RealRandomAccessible<A>, RealRandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
BiConvertedRealRandomAccessible(RealRandomAccessible<A>, RealRandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
BiConvertedRealRandomAccessibleRealInterval<A,B,C extends Type<C>> - Class in net.imglib2.converter.read
TODO
BiConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
BiConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Constructor for class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
BiConverter<A,B,C> - Interface in net.imglib2.converter
This interface would be a TriConsumer if such an interface existed in the JDK.
bigIntegerCollection(IterableInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps an IntegerType iterable image as a collection.
bigIntegerList(RandomAccessibleInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a IntegerType random-accessible image as a list.
BinaryCompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite
A CompositeMaskPredicate with a binary operator and two operands.
BinaryMaskOperator(BinaryOperator<BoundaryType>, Bounds.BinaryBoundsOperator, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.Operators.BinaryMaskOperator
 
BinaryMaskRegionOfInterest<T extends BitType,I extends RandomAccessibleInterval<T>> - Class in net.imglib2.roi
Deprecated.
BinaryMaskRegionOfInterest(I) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
BinaryMaskRegionOfInterest.BMROIIterableInterval<TT extends Type<TT>> - Class in net.imglib2.roi
Deprecated.
 
BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor - Class in net.imglib2.roi
Deprecated.
The cursor works by managing a cursor from the original image.
BinaryMaskRegionOfInterest.BMROIIterationOrder - Class in net.imglib2.roi
Deprecated.
 
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using squared Euclidian (L2) or L1 distance.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using squared Euclidian (L2) or L1 distance.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using squared Euclidian (L2) or L1 distance.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using squared Euclidian (L2) or L1 distance.
binaryTransform(RandomAccessibleInterval<B>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
binaryTransform(RandomAccessible<B>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create binary distance transform on source using arbitrary Distance d.
BinMapper1d<T> - Interface in net.imglib2.histogram
An interface for defining a bin mapping algorithm.
Binning - Class in net.imglib2.util
Static utility methods to convert from a value to a bin, useful for dealing with histograms and LUTs.
Binning() - Constructor for class net.imglib2.util.Binning
 
bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<BitType, LongAccess> using a LongAccess passed as argument.
bits(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
BitType - Class in net.imglib2.type.logic
TODO
BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.logic.BitType
 
BitType(boolean) - Constructor for class net.imglib2.type.logic.BitType
 
BitType(LongAccess) - Constructor for class net.imglib2.type.logic.BitType
 
BitType() - Constructor for class net.imglib2.type.logic.BitType
 
BlackTopHat - Class in net.imglib2.algorithm.morphology
Black top-hat (bottom-hat) transform for ImgLib2.
blackTopHat(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
blackTopHat(Img<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a list of Shapes as a flat structuring element.
blackTopHat(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.
blackTopHat(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a Shape as a flat structuring element.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHatInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a list of Shapes as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a Shape as a flat structuring element.
block(RandomAccessible<T>, long[]) - Static method in class net.imglib2.algorithm.math.ImgMath
 
block(RandomAccessible<T>, long) - Static method in class net.imglib2.algorithm.math.ImgMath
 
block(RandomAccessible<T>, long[][]) - Static method in class net.imglib2.algorithm.math.ImgMath
 
BlockingFetchQueues<E> - Class in net.imglib2.cache.queue
TODO revise javadoc Queueing structure (intended for cache entries to be fetched).
BlockingFetchQueues(int, int) - Constructor for class net.imglib2.cache.queue.BlockingFetchQueues
 
BlockingFetchQueues(int, int, int) - Constructor for class net.imglib2.cache.queue.BlockingFetchQueues
 
BlockReadingDirect<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
BlockReadingDirect(O, RandomAccessible<O>, long[][], byte[]) - Constructor for class net.imglib2.algorithm.math.execution.BlockReadingDirect
 
BlockReadingSource<I extends RealType<I>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
BlockReadingSource(O, Converter<RealType<?>, O>, RandomAccessible<I>, long[][], byte[]) - Constructor for class net.imglib2.algorithm.math.execution.BlockReadingSource
 
BlockReadSource<I extends RealType<I>> - Class in net.imglib2.algorithm.math
Intended for reading cuboid blocks out of an integral image.
BlockReadSource(RandomAccessible<I>, long[]) - Constructor for class net.imglib2.algorithm.math.BlockReadSource
A block centered on a particular pixel.
BlockReadSource(RandomAccessible<I>, long) - Constructor for class net.imglib2.algorithm.math.BlockReadSource
A block centered on a particular pixel.
BlockReadSource(RandomAccessible<I>, long[][]) - Constructor for class net.imglib2.algorithm.math.BlockReadSource
 
blockSize - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BLUE - Static variable in interface net.imglib2.display.ColorTable
 
blue(int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
blue(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
BMROICursor() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
BMROIIterableInterval(RandomAccess<TT>) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
BMROIIterationOrder() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder
Deprecated.
 
BOOLEAN(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
BooleanAccess - Interface in net.imglib2.img.basictypeaccess
TODO
BooleanArray - Class in net.imglib2.img.basictypeaccess.array
 
BooleanArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.BooleanArray
 
BooleanArray(boolean[]) - Constructor for class net.imglib2.img.basictypeaccess.array.BooleanArray
 
booleanCollection(IterableInterval<? extends BooleanType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a BooleanType iterable image as a collection.
booleanList(RandomAccessibleInterval<? extends BooleanType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a BooleanType random-accessible image as a list.
BooleanNtree - Class in net.imglib2.img.sparse
BitAccess based on a Ntree.
BooleanNtree(long[], long[], boolean) - Constructor for class net.imglib2.img.sparse.BooleanNtree
 
booleans(long...) - Static method in class net.imglib2.img.array.ArrayImgs
booleans(boolean[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<NativeBoolType, BooleanArray> reusing a passed byte[] array.
booleans(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<NativeBoolType, BooleanAccess> using a BooleanAccess passed as argument.
booleans(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
BooleanType<T extends BooleanType<T>> - Interface in net.imglib2.type
TODO
BoolType - Class in net.imglib2.type.logic
A BooleanType wrapping a single primitive boolean variable.
BoolType() - Constructor for class net.imglib2.type.logic.BoolType
 
BoolType(boolean) - Constructor for class net.imglib2.type.logic.BoolType
 
BoolType(T) - Constructor for class net.imglib2.type.logic.BoolType
 
boundary - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
Boundary<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
An IterableRegion of the boundary pixels of a source boolean RandomAccessibleInterval.
Boundary(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.Boundary
 
Boundary(RandomAccessibleInterval<T>, Boundary.StructuringElement) - Constructor for class net.imglib2.roi.boundary.Boundary
 
Boundary.StructuringElement - Enum in net.imglib2.roi.boundary
 
BoundaryRandomAccess4<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
BoundaryRandomAccess4(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess4
 
BoundaryRandomAccess8<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
BoundaryRandomAccess8(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess8
 
BoundaryType - Enum in net.imglib2.roi
Defines the edge behavior of the Mask.
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
boundaryType() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
boundaryType() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
boundaryType() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableBox
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableEllipsoid
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableSphere
 
boundaryType() - Method in class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid
 
boundaryType() - Method in interface net.imglib2.roi.geom.real.Line
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableBox
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableEllipsoid
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritablePolygon2D
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableSphere
 
boundaryType() - Method in class net.imglib2.roi.geom.real.OpenWritableSuperEllipsoid
 
boundaryType() - Method in interface net.imglib2.roi.geom.real.PointMask
 
boundaryType() - Method in interface net.imglib2.roi.geom.real.Polyline
 
boundaryType() - Method in interface net.imglib2.roi.geom.real.RealPointCollection
 
boundaryType() - Method in class net.imglib2.roi.mask.integer.DefaultMask
 
boundaryType() - Method in class net.imglib2.roi.mask.integer.DefaultMaskInterval
 
boundaryType() - Method in class net.imglib2.roi.mask.real.DefaultRealMask
 
boundaryType() - Method in class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
 
boundaryType() - Method in interface net.imglib2.roi.MaskPredicate
Returns the boundary behavior of this Mask.
Bounded - Interface in net.imglib2.outofbounds
Interface implemented by entities (Samplers, Positionables, Localizables) that can tell whether they are currently located outside of the image boundaries.
BoundedSoftRefLoaderCache<K,V> - Class in net.imglib2.cache.ref
A cache that forwards to some other cache (usually WeakRefLoaderCache) and additionally keeps SoftReferences to the N most recently accessed values.
BoundedSoftRefLoaderCache(int, LoaderCache<K, V>) - Constructor for class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
BoundedSoftRefLoaderCache(int) - Constructor for class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
BoundingBox - Class in net.imglib2.labeling
Deprecated.
BoundingBox(int) - Constructor for class net.imglib2.labeling.BoundingBox
Deprecated.
 
BoundingBox - Class in net.imglib2.roi.labeling
A bounding box Interval around a region that is build by aggregating positions contained in the region.
BoundingBox(int) - Constructor for class net.imglib2.roi.labeling.BoundingBox
 
BoundingBox - Class in net.imglib2.transform.integer
TODO
BoundingBox(int) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBox(long[], long[]) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBox(Interval) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
boundingBox - Variable in class net.imglib2.view.TransformBuilder
Interval transformed to the currently visited view.
BoundingBoxTransform - Interface in net.imglib2.transform.integer
Implemented by Transforms that can transform (easily) a BoundingBox in the source space to a bounding box in the target space.
Bounds<I extends RealInterval,B extends Bounds<I,B>> - Class in net.imglib2.roi
Operations on mask bounds.
Bounds(I) - Constructor for class net.imglib2.roi.Bounds
 
Bounds.AbstractAdaptingInterval - Class in net.imglib2.roi
Abstract base class which adapts to changes in source interval, leaving Interval.min(int) and Interval.max(int) methods to be implemented by derived classes.
Bounds.AbstractAdaptingRealInterval - Class in net.imglib2.roi
Abstract base class for bounds which adapt to changes in the source interval, leaving RealInterval.realMin(int) and RealInterval.realMax(int) methods to be implemented by derived classes.
Bounds.BinaryBoundsOperator - Interface in net.imglib2.roi
 
Bounds.IntBounds - Class in net.imglib2.roi
Implement Bounds for integer intervals.
Bounds.IntersectionInterval - Class in net.imglib2.roi
The intersection of two intervals.
Bounds.IntersectionRealInterval - Class in net.imglib2.roi
The intersection of two intervals.
Bounds.RealBounds - Class in net.imglib2.roi
Implement Bounds for real intervals.
Bounds.RealTransformRealInterval - Class in net.imglib2.roi
The Bounds for a transformed source.
Bounds.SmallestContainingInterval - Class in net.imglib2.roi
Represents the smallest Interval completely containing a specified RealInterval.
Bounds.UnaryBoundsOperator - Interface in net.imglib2.roi
 
Bounds.UnionInterval - Class in net.imglib2.roi
The union of two intervals.
Bounds.UnionRealInterval - Class in net.imglib2.roi
The union of two intervals.
Box - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines an n-d box, cuboid, hyperrectangle, etc.
Branchpoints - Class in net.imglib2.algorithm.morphology.table2d
Removes all pixels except those that are the branchpoints of a skeleton.
Branchpoints() - Constructor for class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
branchpoints(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
branchpoints(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
bresenham(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMaths
 
BresenhamLine<T> - Class in net.imglib2.algorithm.region
n-Dimension Bresenham line (http://en.wikipedia.org/wiki/Bresenham%27s_line_algorithm") : an iterator that iterates all the pixels between two points.
BresenhamLine(RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
BresenhamLine(RandomAccessible<T>, Localizable, Localizable) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
BresenhamLine(RandomAccess<T>, Localizable, Localizable) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
Bridge - Class in net.imglib2.algorithm.morphology.table2d
Sets a pixel to 1 if it has two non-zero neighbors that are on opposite sides of this pixel.
Bridge() - Constructor for class net.imglib2.algorithm.morphology.table2d.Bridge
 
bridge(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Bridge
 
bridge(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Bridge
 
BrightToDark() - Constructor for class net.imglib2.algorithm.componenttree.BuildComponentTree.BrightToDark
 
BSplineCoefficientsInterpolator<T extends RealType<T>> - Interface in net.imglib2.algorithm.bspline
Performs b-spline interpolation for order up to and including 5.
BSplineCoefficientsInterpolatorEven<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline
Computes b-spline coefficients for splines of even order.
BSplineCoefficientsInterpolatorEven(int, RandomAccessible<T>, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
BSplineCoefficientsInterpolatorFactory<T extends RealType<T>,S extends RealType<S>> - Class in net.imglib2.algorithm.interpolation.randomaccess
 
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, ImgFactory<S>, OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
Creates a new BSplineCoefficientsInterpolatorFactory using the BSpline interpolation in a certain window
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, S) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFactory(RandomAccessibleInterval<S>, int, boolean, OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
BSplineCoefficientsInterpolatorFunction<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline
Performs b-spline interpolation using pre-computed coefficients.
BSplineCoefficientsInterpolatorFunction(int, RandomAccess<Neighborhood<T>>, RealLocalizable, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction
 
BSplineCoefficientsInterpolatorFunction(int, RandomAccess<Neighborhood<T>>, RealLocalizable, T, boolean) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction
 
BSplineCoefficientsInterpolatorOdd<T extends RealType<T>> - Class in net.imglib2.algorithm.bspline
Computes b-spline coefficients for splines of odd order.
BSplineCoefficientsInterpolatorOdd(int, RandomAccessible<T>, T) - Constructor for class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
BSplineDecomposition<T extends RealType<T>,S extends RealType<S>> - Class in net.imglib2.algorithm.bspline
Compute Bspline coefficients from an image.
BSplineDecomposition(int, RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.bspline.BSplineDecomposition
 
BSplineDecomposition(RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.bspline.BSplineDecomposition
 
BSplineInterpolator<T extends RealType<T>> - Class in net.imglib2.algorithm.interpolation.randomaccess
Performs cubic b-spline interpolation by pre-computing coefficients on the fly.
BSplineInterpolator(BSplineInterpolator<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
BSplineInterpolator(RandomAccessible<T>, int, boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
BSplineInterpolator(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
Build a default cubic-bspline interpolator.
BSplineInterpolatorFactory<T extends RealType<T>> - Class in net.imglib2.algorithm.interpolation.randomaccess
 
BSplineInterpolatorFactory(boolean, int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window
BSplineInterpolatorFactory(boolean) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window
BSplineInterpolatorFactory(int) - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
Creates a new BSplineInterpolatorFactory using the BSpline interpolation in a certain window
BSplineInterpolatorFactory() - Constructor for class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
Creates a new BSplineInterpolatorFactory with standard parameters (third-order, with clipping)
BsplineKernel0 - Class in net.imglib2.algorithm.bspline
A zeroth-order Bspline kernel Trivial, but included for completeness.
BsplineKernel0() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel0
 
BsplineKernel1 - Class in net.imglib2.algorithm.bspline
A first-order Bspline kernel Trivial, but included for completeness.
BsplineKernel1() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel1
 
BsplineKernel2 - Class in net.imglib2.algorithm.bspline
A second-order Bspline kernel
BsplineKernel2() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel2
 
BsplineKernel3 - Class in net.imglib2.algorithm.bspline
A third-order Bspline kernel
BsplineKernel3() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel3
 
BsplineKernel4 - Class in net.imglib2.algorithm.bspline
A fourth-order Bspline kernel
BsplineKernel4() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel4
 
BsplineKernel5 - Class in net.imglib2.algorithm.bspline
A fifth-order Bspline kernel
BsplineKernel5() - Constructor for class net.imglib2.algorithm.bspline.BsplineKernel5
 
BSplineLazyCoefficientsInterpolatorFactory<T extends RealType<T>,S extends RealType<S> & NativeType<S>> - Class in net.imglib2.algorithm.bspline
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S, int[], OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, int, boolean, S, int[], OutOfBoundsFactory<? extends RealType<?>, ?>) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, boolean, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessible<T>, Interval, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, S, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, boolean, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory(RandomAccessibleInterval<T>, int, int[]) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
BSplineLazyCoefficientsInterpolatorFactory.LazyCellImgFactory<T extends RealType<T>,S extends RealType<S> & NativeType<S>> - Class in net.imglib2.algorithm.bspline
Returns an image of coefficients that is lazily evaluated and cached.
bsplineOrder - Variable in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
bsplineOrder - Variable in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
BufferedRectangularNeighborhood<T extends Type<T>> - Class in net.imglib2.algorithm.region.localneighborhood
 
BufferedRectangularNeighborhood(RandomAccessibleInterval<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
BufferedRectangularNeighborhood(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
BufferedRectangularNeighborhoodCursor<T extends Type<T>> - Class in net.imglib2.algorithm.region.localneighborhood
 
BufferedRectangularNeighborhoodCursor(BufferedRectangularNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
BufferedRectangularNeighborhoodCursor(BufferedRectangularNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
build(int, RandomAccessible<S>, S) - Static method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator
 
build(Function<S, T>, Function<T, S>) - Static method in interface net.imglib2.cache.util.KeyBimap
 
build() - Method in class net.imglib2.view.TransformBuilder
Create a sequence of wrapped RandomAccessibles from the TransformBuilder.transforms list.
BuildComponentTree<T extends Type<T>,C extends PartialComponent<T,C>> - Class in net.imglib2.algorithm.componenttree
Build the component tree of an image.
buildComponentTree(RandomAccessibleInterval<T>, PartialComponent.Generator<T, C>, PartialComponent.Handler<C>, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.BuildComponentTree
Run the algorithm.
buildComponentTree(RandomAccessibleInterval<T>, PartialComponent.Generator<T, C>, PartialComponent.Handler<C>, boolean) - Static method in class net.imglib2.algorithm.componenttree.BuildComponentTree
Run the algorithm.
buildComponentTree(RandomAccessibleInterval<T>, T, boolean) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, ImgFactory<LongType>, boolean) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, Comparator<T>, ImgFactory<LongType>) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
BuildComponentTree.BrightToDark<T extends Comparable<T>> - Class in net.imglib2.algorithm.componenttree
Default comparator for Comparable pixel values for bright-to-dark pass.
BuildComponentTree.DarkToBright<T extends Comparable<T>> - Class in net.imglib2.algorithm.componenttree
Default comparator for Comparable pixel values for dark-to-bright pass.
buildIterableInterval() - Method in class net.imglib2.view.iteration.IterableTransformBuilder
Create an IterableInterval on the Interval specified in the constructor of the RandomAccessible specified in the constructor.
buildMserTree(RandomAccessibleInterval<T>, double, long, long, double, double, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, T, long, long, double, double, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, T, long, long, double, double, ImgFactory<LongType>, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, ComputeDelta<T>, long, long, double, double, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, ComputeDelta<T>, long, long, double, double, ImgFactory<LongType>, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
BYTE(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
BYTE(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
ByteAccess - Interface in net.imglib2.img.basictypeaccess
TODO
ByteAccessProxy<T extends GenericByteType<T>> - Class in net.imglib2.img.io.proxyaccess
Proxy access over any GenericByteType container.
ByteAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.ByteAccessProxy
 
ByteArray - Class in net.imglib2.img.basictypeaccess.array
 
ByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
 
ByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
 
byteArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
ByteArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.ByteArrayType
 
ByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ByteType, ByteArray>.
ByteAWTScreenImage(ArrayImg<ByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
ByteAWTScreenImage(ByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
ByteImagePlus<T extends NativeType<T>> - Class in net.imglib2.img.imageplus
ImagePlusImg for byte-stored data.
ByteImagePlus(long[], Fraction) - Constructor for class net.imglib2.img.imageplus.ByteImagePlus
 
ByteImagePlus(ImagePlus) - Constructor for class net.imglib2.img.imageplus.ByteImagePlus
 
ByteLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
ByteLongAccessType - Class in net.imglib2.type.numeric.integer
 
ByteLongAccessType(NativeLongAccessImg<?, ? extends ByteLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType
 
ByteLongAccessType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType
 
ByteLongAccessType(ByteLongAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType
 
ByteLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.ByteLongAccessType
 
ByteLongAccessTypeByteTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ByteLongAccessTypeByteTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter
 
ByteLongAccessTypeByteTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
ByteNtree - Class in net.imglib2.img.sparse
ByteAccess based on a Ntree.
ByteNtree(long[], long[], byte) - Constructor for class net.imglib2.img.sparse.ByteNtree
 
bytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs
bytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ByteType, ByteArray> reusing a passed byte[] array.
bytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ByteType, ByteAccess> using a ByteAccess passed as argument.
bytes(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
bytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
bytes(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
bytes(ByteLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<ByteLongAccessType, ByteArray> reusing a passed byte[] array.
bytes - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
ByteType - Class in net.imglib2.type.numeric.integer
TODO
ByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType() - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
ByteUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
ByteUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
ByteUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
ByteUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 

C

c - Variable in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
c0() - Method in class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel0
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel1
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel2
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel3
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel4
 
c0() - Method in class net.imglib2.algorithm.bspline.BsplineKernel5
 
cache(RandomAccessibleInterval<T>, int...) - Static method in interface net.imglib2.algorithm.lazy.Caches
Cache a RandomAccessibleInterval of the typical NativeType implementations in a memory cell image with volatile cells.
Cache<K,V> - Interface in net.imglib2.cache
 
cache - Variable in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
cache(T) - Method in class net.imglib2.img.ImgFactory
Deprecated.
CacheAsUncheckedCacheAdapter<K,V> - Class in net.imglib2.cache.util
Wraps a Cache<K,V> as an UncheckedCache<K,V>.
CacheAsUncheckedCacheAdapter(Cache<K, V>) - Constructor for class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
cached_first_element - Variable in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
CachedCellImg<T extends NativeType<T>,A> - Class in net.imglib2.cache.img
A LazyCellImg that creates empty Cells lazily when they are accessed and stores (modified) Cells in a disk cache when memory runs full.
CachedCellImg(CellGrid, Fraction, Cache<Long, Cell<A>>, A) - Constructor for class net.imglib2.cache.img.CachedCellImg
 
CachedCellImg(CellGrid, T, Cache<Long, Cell<A>>, A) - Constructor for class net.imglib2.cache.img.CachedCellImg
 
cacheDirectory(Path) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions
Set the path of the cell cache directory.
cacheDirectory() - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
CacheHints - Class in net.imglib2.cache.volatiles
Hints to a cache on how to handle data requests.
CacheHints(LoadingStrategy, int, boolean) - Constructor for class net.imglib2.cache.volatiles.CacheHints
 
CacheIoTiming - Class in net.imglib2.cache.iotiming
Utilities for per ThreadGroup measuring and budgeting of time spent in (blocking) IO.
CacheKeyAdapter<K,L,V,C extends Cache<L,V>> - Class in net.imglib2.cache.util
 
CacheKeyAdapter(C, KeyBimap<K, L>) - Constructor for class net.imglib2.cache.util.CacheKeyAdapter
 
CacheLoader<K,V> - Interface in net.imglib2.cache
 
CacheOptions<T> - Interface in net.imglib2.cache.img.optional
Optional arguments that specify the in memory-cache to use.
CacheOptions.CacheType - Enum in net.imglib2.cache.img.optional
Rough in-memory cache types.
CacheOptions.Val - Interface in net.imglib2.cache.img.optional
 
CacheRemover<K,V,D> - Interface in net.imglib2.cache
Handles entries that are removed from a cache (by propagating to a higher-level cache, writing to disk, or similar).
Caches - Interface in net.imglib2.algorithm.lazy
A simple method to cache an arbitrary a RandomAccessibleInterval of the typical NativeType implementations in a memory cell image with volatile cells.
Caches - Class in net.imglib2.cache.util
 
Caches() - Constructor for class net.imglib2.cache.util.Caches
 
Caches.RandomAccessibleLoader<T extends NativeType<T>> - Class in net.imglib2.algorithm.lazy
A simple CellLoader implementation that fills a pre-allocated cell with data from a RandomAccessible source at the same coordinates.
cacheType(CacheOptions.CacheType) - Method in interface net.imglib2.cache.img.optional.CacheOptions
Which in-memory cache type to use.
cacheType() - Method in interface net.imglib2.cache.img.optional.CacheOptions.Val
 
calculate(Img<T>) - Method in class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
calculate(RandomAccessible<T>, IterableInterval<T>) - Method in class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
calculateEigenValues(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, EigenValues<T, U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValues(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, EigenValues<T, U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSquare(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSquare(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSymmetric(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSymmetric(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, OutOfBoundsFactory<U, ? super RandomAccessibleInterval<U>>, double...) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, OutOfBoundsFactory<T, ? super RandomAccessibleInterval<T>>) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, OutOfBoundsFactory<U, ? super RandomAccessibleInterval<U>>, int, ExecutorService, double...) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, OutOfBoundsFactory<T, ? super RandomAccessibleInterval<T>>, int, ExecutorService) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, int, ExecutorService) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
CalibrationUtils - Class in net.imglib2.img.display.imagej
 
CalibrationUtils() - Constructor for class net.imglib2.img.display.imagej.CalibrationUtils
 
call() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
canFuseColor(ImgPlus<? extends RealType<?>>) - Static method in class net.imglib2.img.display.imagej.ImgPlusViews
Indicates it ImgPlusViews.fuseColor(ImgPlus) can by used.
canMoveOutside - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
Cast - Class in net.imglib2.util
Utility class for type casts.
Cell<A> - Class in net.imglib2.img.cell
A cell of an AbstractCellImg.
Cell(int[], long[], A) - Constructor for class net.imglib2.img.cell.Cell
 
CellCursor<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
CellCursor(CellCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellCursor
 
CellCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellCursor
 
cellDimension(int) - Method in class net.imglib2.img.cell.CellGrid
Get the number of pixels in a standard cell in a given dimension d.
cellDimensions(int...) - Method in interface net.imglib2.cache.img.optional.CellDimensionsOptions
Set the dimensions of a cell.
cellDimensions() - Method in interface net.imglib2.cache.img.optional.CellDimensionsOptions.Val
 
cellDimensions(int[]) - Method in class net.imglib2.img.cell.CellGrid
Write the number of pixels in a standard cell in each dimension into long[].
CellDimensionsOptions<T> - Interface in net.imglib2.cache.img.optional
Optional arguments that specify the dimensions of a Cell.
CellDimensionsOptions.Val - Interface in net.imglib2.cache.img.optional
 
cellDims - Variable in class net.imglib2.img.cell.CellRandomAccess
 
CellGrid - Class in net.imglib2.img.cell
Defines AbstractCellImg geometry and translates between image, cell, and grid coordinates.
CellGrid(long[], int[]) - Constructor for class net.imglib2.img.cell.CellGrid
 
CellGrid(CellGrid) - Constructor for class net.imglib2.img.cell.CellGrid
 
CellImg<T extends NativeType<T>,A> - Class in net.imglib2.img.cell
 
CellImg(CellImgFactory<T>, CellGrid, ListImg<Cell<A>>, Fraction) - Constructor for class net.imglib2.img.cell.CellImg
 
CellImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.cell
Factory for creating CellImgs.
CellImgFactory(T) - Constructor for class net.imglib2.img.cell.CellImgFactory
 
CellImgFactory(T, int...) - Constructor for class net.imglib2.img.cell.CellImgFactory
 
CellImgFactory() - Constructor for class net.imglib2.img.cell.CellImgFactory
Deprecated.
CellImgFactory(int...) - Constructor for class net.imglib2.img.cell.CellImgFactory
Deprecated.
CellImgToVirtualStack - Class in net.imglib2.img.display.imagej
Utility class to convert a CellImg (and SCIFIOCellImg, CachedCellImg) to ImagePlus.
CellImgToVirtualStack() - Constructor for class net.imglib2.img.display.imagej.CellImgToVirtualStack
 
CellIterationOrder - Class in net.imglib2.img.cell
Iteration order for a CellImg.
CellIterationOrder(AbstractCellImg<?, ?, ?, ?>) - Constructor for class net.imglib2.img.cell.CellIterationOrder
 
CellLoader<T extends NativeType<T>> - Interface in net.imglib2.cache.img
Populates cells with data.
CellLocalizingCursor<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
Localizing Cursor on a AbstractCellImg.
CellLocalizingCursor(CellLocalizingCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
 
CellLocalizingCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
 
CellRandomAccess<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
CellRandomAccess(CellRandomAccess<T, C>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
 
CellRandomAccess(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
 
cells - Variable in class net.imglib2.img.cell.AbstractCellImg
 
center - Variable in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
center - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
The pixel coordinates of the center of this regions.
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
 
center - Variable in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
Returns the center.
center - Variable in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
center() - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
Returns the center.
center() - Method in interface net.imglib2.roi.geom.real.Box
Returns the center of the Box.
center() - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid
Returns the center of the superellipsoid
center() - Method in interface net.imglib2.roi.geom.real.WritableBox
 
center() - Method in interface net.imglib2.roi.geom.real.WritableSuperEllipsoid
 
CenteredRectangleShape - Class in net.imglib2.algorithm.neighborhood
A factory for Accessibles on rectangular neighborhoods.
CenteredRectangleShape(int[], boolean) - Constructor for class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
Constructs a factory for symmetric, non-isotropic rectangle neighborhoods.
centerValuesPerBin(int, double, double) - Static method in class net.imglib2.util.Binning
Returns array of center values for each bin.
centralAsymmetric(double...) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Creates a one-dimensional asymmetric convolution kernel, where the origin of the kernel is in the middle.
centralAsymmetric(double[][]) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Similar to Kernel1D.centralAsymmetric(double...) but creates an array of one-dimensional convolution kernels.
ChannelARGBConverter - Class in net.imglib2.converter
Convert UnsignedByteType into one channel of ARGBType.
ChannelARGBConverter(ChannelARGBConverter.Channel) - Constructor for class net.imglib2.converter.ChannelARGBConverter
 
ChannelARGBConverter.Channel - Enum in net.imglib2.converter
 
channelCount() - Method in enum net.imglib2.converter.ColorChannelOrder
 
channels - Variable in class net.imglib2.img.imageplus.ImagePlusImg
 
CHAR(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
CHAR(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
CharAccess - Interface in net.imglib2.img.basictypeaccess
TODO
CharArray - Class in net.imglib2.img.basictypeaccess.array
 
CharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
 
CharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
 
charArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
CharArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.CharArrayType
 
CharLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
CharNtree - Class in net.imglib2.img.sparse
CharAccess based on a Ntree.
CharNtree(long[], long[], char) - Constructor for class net.imglib2.img.sparse.CharNtree
 
CharUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
CharUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
CharUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
CharUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
CharUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
check(C, Neighborhood<T>) - Method in interface net.imglib2.algorithm.localextrema.LocalExtrema.LocalNeighborhoodCheck
Determine whether a pixel is a local extremum.
check(C, Neighborhood<T>) - Method in class net.imglib2.algorithm.localextrema.LocalExtrema.MaximumCheck
 
check(C, Neighborhood<T>) - Method in class net.imglib2.algorithm.localextrema.LocalExtrema.MinimumCheck
 
checkBijectivity(int[]) - Static method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
checkDimensions(Object...) - Static method in class net.imglib2.roi.Operators
Checks that all args have same dimensionality.
checkInput() - Method in interface net.imglib2.algorithm.Algorithm
 
checkInput() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
checkInput() - Method in class net.imglib2.algorithm.integral.IntegralImg
 
checkInput() - Method in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
checkInput() - Method in class net.imglib2.algorithm.labeling.Watershed
 
checkInput() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
checkInput() - Method in class net.imglib2.algorithm.math.PickImagePeaks
 
checkInput() - Method in class net.imglib2.algorithm.pde.CoherenceEnhancingDiffusionTensor2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
checkInput() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.Gradient
 
checkInput() - Method in class net.imglib2.algorithm.pde.IsotropicDiffusionTensor
 
checkInput() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
 
checkInput() - Method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
checkInput() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
checkInput() - Method in class net.imglib2.algorithm.stats.Histogram
 
checkInput() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
checkInterval(Interval, int[]) - Static method in class net.imglib2.transform.integer.permutation.PermutationTransform
Test whether a given lut can be applied to an interval.
checkOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
children() - Method in interface net.imglib2.algorithm.math.abstractions.OFunction
 
children() - Method in class net.imglib2.algorithm.math.execution.Addition
 
children() - Method in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
children() - Method in class net.imglib2.algorithm.math.execution.Comparison
 
children() - Method in class net.imglib2.algorithm.math.execution.Division
 
children() - Method in class net.imglib2.algorithm.math.execution.Exponential
 
children() - Method in class net.imglib2.algorithm.math.execution.IfStatement
 
children() - Method in class net.imglib2.algorithm.math.execution.IfStatementBoolean
 
children() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
children() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
children() - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
children() - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
children() - Method in class net.imglib2.algorithm.math.execution.Logarithm
 
children() - Method in class net.imglib2.algorithm.math.execution.LogicalNot
 
children() - Method in class net.imglib2.algorithm.math.execution.Maximum
 
children() - Method in class net.imglib2.algorithm.math.execution.Minimum
 
children() - Method in class net.imglib2.algorithm.math.execution.Multiplication
 
children() - Method in class net.imglib2.algorithm.math.execution.NumericSource
 
children() - Method in class net.imglib2.algorithm.math.execution.Power
 
children() - Method in class net.imglib2.algorithm.math.execution.Printing
 
children() - Method in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
children() - Method in class net.imglib2.algorithm.math.execution.Subtraction
 
children() - Method in class net.imglib2.algorithm.math.execution.Variable
 
children() - Method in class net.imglib2.algorithm.math.execution.ZeroMinus
 
chiSquared(double[][], double[], double[], FitFunction) - Static method in class net.imglib2.algorithm.localization.LevenbergMarquardtSolver
Calculate the current sum-squared-error
Chunk - Class in net.imglib2.multithreading
Deprecated.
Chunk(long, long) - Constructor for class net.imglib2.multithreading.Chunk
Deprecated.
 
chunkInterval(Interval, int) - Static method in class net.imglib2.loops.IntervalChunks
Returns a list of disjoint intervals, that covers the given interval.
Ci - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
CircleCursor<T> - Class in net.imglib2.algorithm.region
Iterates over a Bresenham 2D circle using the mid-point algorithm.
CircleCursor(RandomAccessible<T>, Localizable, long) - Constructor for class net.imglib2.algorithm.region.CircleCursor
Iterates over a Bresenham circle in the target RandomAccessible.
CircleCursor(RandomAccessible<T>, Localizable, long, int, int) - Constructor for class net.imglib2.algorithm.region.CircleCursor
Iterates over a Bresenham circle in the target RandomAccessible.
Circles - Class in net.imglib2.algorithm.region
Write circles in an image using the midpoint algorithm.
ClampingNLinearInterpolatorFactory<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
Provides clamping n-linear interpolators for volatile and non-volatile types.
ClampingNLinearInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorFactory
 
ClampingNLinearInterpolatorRealType<T extends RealType<T>> - Class in net.imglib2.interpolation.randomaccess
N-linear interpolator for RealType values with overflow check.
ClampingNLinearInterpolatorRealType(ClampingNLinearInterpolatorRealType<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
ClampingNLinearInterpolatorRealType(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
ClampingNLinearInterpolatorRealType(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
ClampingNLinearInterpolatorVolatileARGB<T extends AbstractVolatileNumericType<ARGBType,T>> - Class in net.imglib2.interpolation.randomaccess
N-linear interpolator for volatile ARGB values with overflow check.
ClampingNLinearInterpolatorVolatileARGB(ClampingNLinearInterpolatorVolatileARGB<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
ClampingNLinearInterpolatorVolatileARGB(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
ClampingNLinearInterpolatorVolatileARGB(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
ClampingNLinearInterpolatorVolatileRealType<R extends RealType<R>,T extends AbstractVolatileRealType<R,T>> - Class in net.imglib2.interpolation.randomaccess
N-linear interpolator for RealType values with overflow check.
ClampingNLinearInterpolatorVolatileRealType(ClampingNLinearInterpolatorVolatileRealType<R, T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
ClampingNLinearInterpolatorVolatileRealType(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
ClampingNLinearInterpolatorVolatileRealType(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
clampMax - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
clampMax - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
clampMin - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
clampMin - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
ClassCopyProvider<T> - Class in net.imglib2.loops
Helper to create multiple copies of a class.
ClassCopyProvider(Class<? extends T>, Class<T>, Class<?>...) - Constructor for class net.imglib2.loops.ClassCopyProvider
Create a ClassCopyProvider to make copy a a given class.
Clean - Class in net.imglib2.algorithm.morphology.table2d
Removes isolated pixels.
Clean() - Constructor for class net.imglib2.algorithm.morphology.table2d.Clean
 
clean(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Clean
 
clean(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Clean
 
cleanUp() - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.WeakRefVolatileCache
Remove entries from the cache whose references have been garbage-collected.
cleanUp() - Method in class net.imglib2.cache.ref.WeakRefVolatileLoaderCache
Remove entries from the cache whose references have been garbage-collected.
clear() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
empty the list.
clear() - Static method in class net.imglib2.algorithm.util.Singleton
Clear all named singletons.
clear() - Method in class net.imglib2.cache.iotiming.IoTimeBudget
Set the budget to 0 (for all levels).
clear() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
Atomically removes all of the elements from this queue.
clear() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
clear() - Method in class net.imglib2.roi.labeling.LabelingType
 
clearToPrefetch() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
Atomically removes all of the elements from this queue.
clip(ConvexPolytope) - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
clip(double[][]) - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
clip - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
ClipConvexPolytopeKDTree<T> - Class in net.imglib2.algorithm.kdtree
Partition nodes in a KDTree into disjoint sets of nodes that are inside and outside a given convex polytope, respectively.
ClipConvexPolytopeKDTree(KDTree<T>) - Constructor for class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
ClippedTransitionRealTransform - Class in net.imglib2.realtransform
A RealTransform that transitions between two n-dimensional RealTransforms.
ClippedTransitionRealTransform(RealTransform, RealTransform, double, double) - Constructor for class net.imglib2.realtransform.ClippedTransitionRealTransform
 
clipping - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
clipping - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
clipping - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
clone() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
clone() - Method in class net.imglib2.algorithm.util.unionfind.LongHashMapUnionFind
 
clone() - Method in class net.imglib2.util.Fraction
 
close(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType Img, using a list of Shapes as a structuring element.
close(Img<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on an Img of Comparable , using a list of Shapes as a structuring element.
close(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType Img, using a Shape as a structuring element.
close(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on an Img of Comparable , using a Shape as a structuring element.
close(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close() - Method in class net.imglib2.img.imageplus.ByteImagePlus
 
close() - Method in class net.imglib2.img.imageplus.FloatImagePlus
 
close() - Method in class net.imglib2.img.imageplus.ImagePlusImg
Free resources.
close() - Method in class net.imglib2.img.imageplus.IntImagePlus
 
close() - Method in class net.imglib2.img.imageplus.ShortImagePlus
 
close() - Method in class net.imglib2.parallel.DefaultTaskExecutor
 
close() - Method in interface net.imglib2.parallel.TaskExecutor
 
close() - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
close() - Method in interface net.imglib2.roi.GeneralPathSegmentHandler
Deprecated.
 
closedBox(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritableBox with closed boundaries.
closedEllipsoid(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
closedPolygon2D(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolygon2D from a list of vertices, with closed boundaries.
closedPolygon2D(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolygon2D from a list of (x, y) coordinates, with closed boundaries.
closedSphere(double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks
closedSuperEllipsoid(double[], double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks
ClosedWritableBox - Class in net.imglib2.roi.geom.real
A Box which contains all edge points defined by the min and max values in each dimension.
ClosedWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableBox
Creates an n-d rectangular RealMask in real space.
ClosedWritableEllipsoid - Class in net.imglib2.roi.geom.real
A Ellipsoid which does not contain any edge points, defined by a center and semi-axis lengths.
ClosedWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableEllipsoid
Creates an n-d ellipsoid, where n is determined by the length of the smaller array.
ClosedWritablePolygon2D - Class in net.imglib2.roi.geom.real
A Polygon2D which contains all boundary points, and is defined by the provided vertices.
ClosedWritablePolygon2D(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
 
ClosedWritablePolygon2D(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
 
ClosedWritableSphere - Class in net.imglib2.roi.geom.real
A Sphere which contains all boundary points.
ClosedWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableSphere
Creates an n-d sphere.
ClosedWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real
A SuperEllipsoid which contains all edge points.
ClosedWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid
Creates an n-d super ellipsoid, where n is determined by the length of the smaller array
closeInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a source RandomAccessibleInterval using a list of Shapes as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RandomAccessibleInterval using a list of Shapes as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RandomAccessibleInterval using a Shape as a flat structuring element.
Closing - Class in net.imglib2.algorithm.morphology
 
code - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Index into weights array.
coefficientAccess - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
coefficients - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
coefficientStorage - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
coefficientType - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
CoherenceEnhancingDiffusionTensor2D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
CoherenceEnhancingDiffusionTensor2D(Img<T>) - Constructor for class net.imglib2.algorithm.pde.CoherenceEnhancingDiffusionTensor2D
 
collapse(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T> into an ( n-1)-dimensional RandomAccessibleInterval< GenericComposite<T>>
collapse(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T> into an (n -1)-dimensional RandomAccessible<GenericComposite <T>>
collapseNumeric(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseNumeric(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends NumericType <T>> into an (n-1)-dimensional RandomAccessible <NumericComposite<T>>
collapseReal(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends RealType<T>> into an (n-1)-dimensional RandomAccessibleInterval<RealComposite<T>>
collapseReal(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends RealType <T>> into an (n-1)-dimensional RandomAccessible <RealComposite<T>>
collectAllContainedIntervals(long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by dimensions and their positions within a cell grid.
collectAllContainedIntervals(long[], long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by min, max and their positions within a cell grid.
collectAllContainedIntervalsWithGridPositions(long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by dimensions and their positions within a cell grid.
collectAllContainedIntervalsWithGridPositions(long[], long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by min, max and their positions within a cell grid.
collectAllOffsets(long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by dimensions.
collectAllOffsets(long[], int[], Function<long[], T>) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by dimensions.
collectAllOffsets(long[], long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by min and max.
collectAllOffsets(long[], long[], int[], Function<long[], T>) - Static method in class net.imglib2.algorithm.util.Grids
Get all blocks of size blockSize contained within an interval specified by min and max.
collection(IterableInterval<T>, Function<T, E>) - Static method in class net.imglib2.util.FlatCollections
ColorChannelOrder - Enum in net.imglib2.converter
 
ColorTable - Interface in net.imglib2.display
 
ColorTable16 - Class in net.imglib2.display
16-bit color lookup table.
ColorTable16() - Constructor for class net.imglib2.display.ColorTable16
Initializes a 16-bit color table with a linear grayscale ramp.
ColorTable16(short[]...) - Constructor for class net.imglib2.display.ColorTable16
Initializes a 16-bit color table with the given table values.
ColorTable8 - Class in net.imglib2.display
8-bit color lookup table.
ColorTable8() - Constructor for class net.imglib2.display.ColorTable8
Initializes an 8-bit color table with a linear grayscale ramp.
ColorTable8(byte[]...) - Constructor for class net.imglib2.display.ColorTable8
Initializes an 8-bit color table with the given table values.
cols(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
 
combineHash(int, int) - Static method in class net.imglib2.util.Util
 
compare(T, T) - Method in class net.imglib2.algorithm.componenttree.BuildComponentTree.BrightToDark
 
compare(T, T) - Method in class net.imglib2.algorithm.componenttree.BuildComponentTree.DarkToBright
 
Compare - Class in net.imglib2.algorithm.math.abstractions
 
Compare(Object, Object) - Constructor for class net.imglib2.algorithm.math.abstractions.Compare
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.Comparison
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.Equality
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.IsGreaterThan
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.IsLessThan
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.LogicalAnd
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.LogicalOr
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.LogicalXor
 
compare(O, O) - Method in class net.imglib2.algorithm.math.execution.NotEquality
 
compare(L, L) - Method in class net.imglib2.KDTree.DimComparator
 
compare(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
compare(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongType
Deprecated.
compareTo(Watershed.PixelIntensity<U>) - Method in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
compareTo(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
 
compareTo(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
 
compareTo(BitType) - Method in class net.imglib2.type.logic.BitType
 
compareTo(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
compareTo(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
compareTo(LongLongAccessType) - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
compareTo(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
compareTo(UnsignedByteLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
compareTo(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
compareTo(UnsignedIntLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
compareTo(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
compareTo(UnsignedLongLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
compareTo(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
compareTo(UnsignedShortLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
compareTo(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
compareTo(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
compareTo(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
compareTo(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
compareTo(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
Comparison<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Comparison(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Comparison
 
compatible_iteration_order - Variable in class net.imglib2.algorithm.math.Compute.Parameters
 
compatibleIterationOrder(List<RandomAccessibleInterval<?>>) - Static method in class net.imglib2.algorithm.math.abstractions.Util
Check for compatibility among the iteration order of the images, and throws a RuntimeException When images have different dimensions.
complement() - Method in interface net.imglib2.type.BasePairType
 
complement() - Method in class net.imglib2.type.label.BasePairBitType
 
complement() - Method in class net.imglib2.type.label.BasePairCharType
 
complexConjugate(RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
complexConjugate() - Method in interface net.imglib2.type.numeric.ComplexType
 
complexConjugate() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
complexConjugate() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
complexConjugate() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
ComplexDoubleLongAccessType - Class in net.imglib2.type.numeric.complex
 
ComplexDoubleLongAccessType(NativeLongAccessImg<?, ? extends DoubleLongAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
ComplexDoubleLongAccessType(double, double) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
ComplexDoubleLongAccessType(DoubleLongAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
ComplexDoubleLongAccessType() - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
ComplexDoubleLongAccessTypeComplexDoubleTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ComplexDoubleLongAccessTypeComplexDoubleTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ComplexDoubleLongAccessTypeComplexDoubleTypeConverter
 
ComplexDoubleLongAccessTypeComplexDoubleTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
complexDoubles(long...) - Static method in class net.imglib2.img.array.ArrayImgs
complexDoubles(double[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<DoubleType, DoubleArray> reusing a passed double[] array.
complexDoubles(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ComplexDoubleType, DoubleAccess> using a DoubleAccess passed as argument.
complexDoubles(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
complexDoubles(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
complexDoubles(DoubleLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<DoubleType, DoubleArray> reusing a passed double[] array.
ComplexDoubleType - Class in net.imglib2.type.numeric.complex
TODO
ComplexDoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(double, double) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType() - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexFloatLongAccessType - Class in net.imglib2.type.numeric.complex
 
ComplexFloatLongAccessType(NativeLongAccessImg<?, ? extends FloatLongAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
ComplexFloatLongAccessType(float, float) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
ComplexFloatLongAccessType(FloatLongAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
ComplexFloatLongAccessType() - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
ComplexFloatLongAccessTypeComplexFloatTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ComplexFloatLongAccessTypeComplexFloatTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ComplexFloatLongAccessTypeComplexFloatTypeConverter
 
ComplexFloatLongAccessTypeComplexFloatTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
complexFloats(long...) - Static method in class net.imglib2.img.array.ArrayImgs
complexFloats(float[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<FloatType, FloatArray> reusing a passed float[] array.
complexFloats(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ComplexFloatType, FloatAccess> using a FloatAccess passed as argument.
complexFloats(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
complexFloats(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
complexFloats(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
complexFloats(FloatLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<FloatType, FloatArray> reusing a passed float[] array.
ComplexFloatType - Class in net.imglib2.type.numeric.complex
TODO
ComplexFloatType(NativeImg<?, ? extends FloatAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(float, float) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(FloatAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType() - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexImaginaryFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Returns the imaginary value of a complex value
ComplexImaginaryFloatConverter() - Constructor for class net.imglib2.converter.ComplexImaginaryFloatConverter
 
ComplexPhaseFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the phase spectrum for a complex value
ComplexPhaseFloatConverter() - Constructor for class net.imglib2.converter.ComplexPhaseFloatConverter
 
ComplexPowerFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the power spectrum for a complex value
ComplexPowerFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerFloatConverter
 
ComplexPowerGLogFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the generalized log of the power spectrum for a complex value
ComplexPowerGLogFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerGLogFloatConverter
 
ComplexRealFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Returns the real value for of complex value
ComplexRealFloatConverter() - Constructor for class net.imglib2.converter.ComplexRealFloatConverter
 
complexToComplex(RandomAccessibleInterval<C>, int, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplex(RandomAccessibleInterval<C>, int, boolean, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplex(RandomAccessibleInterval<C>, int, boolean, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplexForward(RandomAccessibleInterval<C>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexForward(RandomAccessibleInterval<C>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexForward(RandomAccessibleInterval<C>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int, boolean, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
ComplexType<T extends ComplexType<T>> - Interface in net.imglib2.type.numeric
TODO
Component<T,C extends Component<T,C>> - Interface in net.imglib2.algorithm.componenttree
Represents a connected component and a node in a ComponentTree.
component - Variable in class net.imglib2.transform.integer.ComponentMappingTransform
for each component of the target vector: from which source vector component should it be taken.
component - Variable in class net.imglib2.transform.integer.MixedTransform
for each component of the target vector (before translation).
component - Variable in class net.imglib2.transform.integer.SlicingTransform
specifies for each component of the target vector from which source vector component should it be taken.
ComponentForest<C extends Component<?,C>> - Interface in net.imglib2.algorithm.componenttree
A component forest.
ComponentMapping - Interface in net.imglib2.transform.integer
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
ComponentMappingTransform - Class in net.imglib2.transform.integer
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
ComponentMappingTransform(int) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
 
ComponentMappingTransform(int[]) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
 
ComponentTree<C extends Component<?,C>> - Interface in net.imglib2.algorithm.componenttree
A component tree.
compose(List<RandomAccessibleInterval<A>>, Converter<Composite<A>, B>, B) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same Type A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
compose(List<RandomAccessibleInterval<A>>, Converter<Composite<A>, B>, Supplier<B>) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same Type A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
composeNumeric(List<RandomAccessibleInterval<A>>, Converter<NumericComposite<A>, B>, B) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same NumericType A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
composeNumeric(List<RandomAccessibleInterval<A>>, Converter<NumericComposite<A>, B>, Supplier<B>) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same NumericType A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
composeReal(List<RandomAccessibleInterval<A>>, Converter<RealComposite<A>, B>, B) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same RealType A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
composeReal(List<RandomAccessibleInterval<A>>, Converter<RealComposite<A>, B>, Supplier<B>) - Static method in class net.imglib2.converter.Converters
Compose a list of same Interval and same RealType A RandomAccessibleIntervals into a RandomAccessibleInterval of some target Type B using a Converter from Composite of A to B.
Composite<T> - Interface in net.imglib2.view.composite
A Composite is a vector of scalars T.
composite - Variable in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeARGBSamplerConverter - Class in net.imglib2.converter.readwrite
 
CompositeARGBSamplerConverter(ColorChannelOrder) - Constructor for class net.imglib2.converter.readwrite.CompositeARGBSamplerConverter
 
CompositeChannelConverter<T extends Type<T>,A extends Composite<T>> - Class in net.imglib2.converter
A converter to extract one channel of a Composite.
CompositeChannelConverter(long) - Constructor for class net.imglib2.converter.CompositeChannelConverter
 
CompositeFactory<T,C extends Composite<T>> - Interface in net.imglib2.view.composite
A factory to create a Composite vector of scalars T given a RandomAccess.
compositeFactory - Variable in class net.imglib2.view.composite.CompositeView
 
CompositeIntervalView<T,C extends Composite<T>> - Class in net.imglib2.view.composite
CompositeIntervalView(RandomAccessibleInterval<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeIntervalView
 
CompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite
A composite MaskPredicate that knows the operator and operands that are used to create it.
CompositeRandomAccess() - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeRandomAccess(CompositeView<T, C>.CompositeRandomAccess) - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeRegionOfInterest - Class in net.imglib2.roi
Deprecated. 
CompositeRegionOfInterest(int) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Initialize an empty composite region of interest.
CompositeRegionOfInterest(RegionOfInterest) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Initialize a composite region of interest with a single ROI
CompositeRegionOfInterest(Collection<RegionOfInterest>) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
 
CompositeView<T,C extends Composite<T>> - Class in net.imglib2.view.composite
CompositeView collapses the trailing dimension of a RandomAccessible of T into a Composite of T.
CompositeView(RandomAccessible<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeView
 
CompositeView.CompositeRandomAccess - Class in net.imglib2.view.composite
 
CompositeXYProjector<A> - Class in net.imglib2.display.projector.composite
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
CompositeXYProjector(RandomAccessibleInterval<A>, IterableInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYProjector
 
CompositeXYRandomAccessibleProjector<A> - Class in net.imglib2.display.projector.composite
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
CompositeXYRandomAccessibleProjector(RandomAccessibleInterval<A>, RandomAccessibleInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
compute(S, T, U) - Method in interface net.imglib2.algorithm.function.Function
Perform an operation with inputs S and T and output U.
compute(A, A, A) - Method in class net.imglib2.algorithm.function.SubtractNorm
 
compute(A, B, C) - Method in class net.imglib2.algorithm.function.SubtractNormReal
 
compute(A, B, C) - Method in class net.imglib2.algorithm.function.SubtractReal
 
compute(Composite<T>, Composite<U>) - Method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues1D
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues2DSquare
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues2DSymmetric
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSquare
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSymmetric
 
Compute - Class in net.imglib2.algorithm.math
 
Compute(IFunction) - Constructor for class net.imglib2.algorithm.math.Compute
Validate the {code operation}.
compute(IFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
 
compute(RandomAccessibleInterval<I>) - Static method in class net.imglib2.algorithm.math.ImgMath
 
compute(long, long, T, T) - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
Compute.Parameters - Class in net.imglib2.algorithm.math
 
computeConvolution(Img<ComplexFloatType>, Img<ComplexFloatType>, RandomAccessibleInterval<R>, boolean, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
ComputeDelta<T> - Interface in net.imglib2.algorithm.componenttree.mser
For a given threshold value compute the threshold value delta steps down the component tree.
ComputeDeltaBrightToDark<T extends NumericType<T>> - Class in net.imglib2.algorithm.componenttree.mser
Default implementation of ComputeDelta for bright-to-dark pass for NumericType.
ComputeDeltaDarkToBright<T extends NumericType<T>> - Class in net.imglib2.algorithm.componenttree.mser
Default implementation of ComputeDelta for dark-to-bright pass for NumericType.
computeFFT(RandomAccessibleInterval<T>, ImgFactory<S>, S, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, int[], int[], int, boolean) - Static method in class net.imglib2.algorithm.fft.FFTFunctions
Deprecated.
 
computeImgFFT(Interval, RandomAccessible<R>, ImgFactory<ComplexFloatType>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
computeInto(IFunction, RandomAccessibleInterval<O>) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeInto(IFunction, RandomAccessibleInterval<O>, Converter<RealType<?>, O>) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeIntoArrayImg(IFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeIntoFloats(IFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeIntoImg(IFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
 
computeInverseFFT(RandomAccessibleInterval<S>, ImgFactory<T>, T, int, boolean, boolean, int[], int[], float) - Static method in class net.imglib2.algorithm.fft.FFTFunctions
Deprecated.
 
computeKernel() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
Compute the Gaussian Kernel for all dimensions
computeKernelFFT(Interval, long[], long[], boolean, RandomAccessible<R>, ImgFactory<ComplexFloatType>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
computeMinIsotropicSigma(double, double, double[]) - Static method in class net.imglib2.algorithm.dog.DifferenceOfGaussian
Helper function to compute the minimum sigma that can be given to DifferenceOfGaussian.computeSigmas(double, double, double[], double, double) while still achieving isotropic smoothed images.
ComputeMinMax<T extends Type<T> & Comparable<T>> - Class in net.imglib2.algorithm.stats
TODO
ComputeMinMax(IterableInterval<T>, T, T) - Constructor for class net.imglib2.algorithm.stats.ComputeMinMax
 
computeMinMax(RandomAccessibleInterval<T>, T, T) - Static method in class net.imglib2.algorithm.stats.ComputeMinMax
Computes minimal and maximal value in a given interval
computeSigmas(double, double, double[], double, double) - Static method in class net.imglib2.algorithm.dog.DifferenceOfGaussian
Helper function to compute per-dimension sigmas in pixel coordinates.
computeSize() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
Compute the number of elements for iteration
computeSize() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
Compute the number of elements for iteration
computeSize() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
Compute the number of elements for iteration
computeStatistics() - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
Compute all statistics on the labels if cache is dirty.
computeTargetImageDimensionsAndOffset(Interval, Shape) - Static method in class net.imglib2.algorithm.morphology.MorphologyUtils
Static util to compute the final image dimensions and required offset when performing a full dilation with the specified strel.
computeType - Variable in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
computeWeight(double) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
concat(Convolution<T>...) - Static method in interface net.imglib2.algorithm.convolution.Convolution
Concatenate multiple Convolutions to one convolution.
concat(List<? extends Convolution<T>>) - Static method in interface net.imglib2.algorithm.convolution.Convolution
 
Concatenable<A> - Interface in net.imglib2.concatenate
If T implements Concatenable that means you can concatenate it with an A, usually resulting in another T.
concatenate(A) - Method in interface net.imglib2.concatenate.Concatenable
Concatenate this object with a.
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform
 
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform2D
 
concatenate(AffineTransform2D) - Method in class net.imglib2.realtransform.AffineTransform2D
 
concatenate(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(AffineTransform3D.AffineMatrix3D) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(double...) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(AffineTransform3D) - Method in class net.imglib2.realtransform.AffineTransform3D
 
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform3D
 
concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale
 
concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale2D
 
concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale3D
 
concatenate(ScaleAndTranslationGet) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation2D
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation3D
 
concatenate(ComponentMapping) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
concatenate(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
 
concatenate(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
 
concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
 
concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
concatenate(int, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Concatenate an array of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Concatenate a list of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, StackView.StackAccessMode, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Concatenate an array of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, StackView.StackAccessMode, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Concatenate a list of RandomAccessibleInterval along the provided concatenationAxis.
ConcatenateUtils - Class in net.imglib2.concatenate
Utilities for manipulating lists of (pre-)concatenable objects.
ConcatenateUtils() - Constructor for class net.imglib2.concatenate.ConcatenateUtils
 
ConnectedComponentAnalysis - Class in net.imglib2.algorithm.labeling
 
ConnectedComponentAnalysis() - Constructor for class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
 
connectedComponents(RandomAccessibleInterval<B>, RandomAccessibleInterval<L>) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Implementation of connected component analysis that uses IntArrayRankedUnionFind to find sets of pixels that are connected with respect to a 4-neighborhood (DiamondShape) or the generalization for higher dimenions over a binary mask.
connectedComponents(RandomAccessibleInterval<B>, RandomAccessibleInterval<L>, Shape) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Implementation of connected component analysis that uses IntArrayRankedUnionFind to find sets of pixels that are connected with respect to a neighborhood (shape) over a binary mask.
connectedComponents(RandomAccessibleInterval<B>, RandomAccessibleInterval<L>, Shape, LongFunction<UnionFind>, ToLongBiFunction<Localizable, L>, LongUnaryOperator) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Implementation of connected component analysis that uses UnionFind to find sets of pixels that are connected with respect to a neighborhood (shape) over a binary mask.
ConnectedComponents - Class in net.imglib2.algorithm.labeling
Label all connected components of a binary image.
ConnectedComponents() - Constructor for class net.imglib2.algorithm.labeling.ConnectedComponents
 
ConnectedComponents.StructuringElement - Enum in net.imglib2.algorithm.labeling
 
connectedComponentsOnAffinities(RandomAccessible<C>, long[][], RandomAccessibleInterval<L>, UnionFind, ToLongBiFunction<Localizable, L>, LongUnaryOperator) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Connected components on a regular arbitrary boolean affinity graph.
connectedComponentsOnAffinities(RandomAccessible<C>, long[][], RandomAccessibleInterval<L>, UnionFind, long) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
Connected components on a regular arbitrary boolean affinity graph.
constantRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
 
constantRandomAccessibleInterval(T, Interval) - Static method in class net.imglib2.util.ConstantUtils
 
constantRandomAccessibleInterval(T, int, Interval) - Static method in class net.imglib2.util.ConstantUtils
Deprecated.
constantRealRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
 
ConstantUtils - Class in net.imglib2.util
 
ConstantUtils() - Constructor for class net.imglib2.util.ConstantUtils
 
constDs - Static variable in class net.imglib2.realtransform.Translation2D
 
constDs - Static variable in class net.imglib2.realtransform.Translation3D
 
container - Variable in class net.imglib2.img.planar.PlanarCursor
 
container - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
contains(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
contains(Object) - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
 
contains(Object) - Method in class net.imglib2.roi.labeling.LabelingType
 
contains(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
contains(double[]) - Method in interface net.imglib2.roi.RegionOfInterest
Deprecated.
Determine whether a point is a member of the region of interest
contains(Interval, Localizable) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval contains the contained point.
contains(RealInterval, RealLocalizable) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval contains the contained point.
contains(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval completely contains the contained interval.
contains(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval completely contains the contained interval.
containsAll(Collection<?>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
containsAll(Collection<?>) - Method in class net.imglib2.roi.labeling.LabelingType
 
convert(A, A) - Method in class net.imglib2.algorithm.function.NormMinMax
 
convert(ARGBType, T) - Method in class net.imglib2.converter.ARGBARGBDoubleConverter
 
convert(T, ARGBType) - Method in class net.imglib2.converter.ARGBDoubleARGBConverter
 
convert(A, B, C) - Method in interface net.imglib2.converter.BiConverter
 
convert(UnsignedByteType, ARGBType) - Method in class net.imglib2.converter.ChannelARGBConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexImaginaryFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPhaseFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerGLogFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexRealFloatConverter
 
convert(A, T) - Method in class net.imglib2.converter.CompositeChannelConverter
 
convert(A, B) - Method in interface net.imglib2.converter.Converter
 
convert(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create an IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create an IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
Create an IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessibleRealInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(RealRandomAccessible<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, RandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, RandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(IterableInterval<A>, IterableInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, IterableInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, IterableRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create an IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(IterableRealInterval<A>, IterableRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a IterableRealInterval whose RealCursors Sampler.get() you a converted sample.
convert(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessibleRealInterval<A>, RealRandomAccessibleRealInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessible<A>, RealRandomAccessible<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(RealRandomAccessible<A>, RealRandomAccessible<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(ARGBLongAccessType, ARGBType) - Method in class net.imglib2.converter.longaccess.ARGBConverter
 
convert(FloatLongAccessType, FloatType) - Method in class net.imglib2.converter.longaccess.FloatConverter
 
convert(Sampler<? extends ARGBType>) - Method in class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
 
convert(Sampler<? extends Composite<UnsignedByteType>>) - Method in class net.imglib2.converter.readwrite.CompositeARGBSamplerConverter
 
convert(Sampler<? extends ARGBLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter
 
convert(Sampler<? extends ByteLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter
 
convert(Sampler<? extends ComplexDoubleLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ComplexDoubleLongAccessTypeComplexDoubleTypeConverter
 
convert(Sampler<? extends ComplexFloatLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ComplexFloatLongAccessTypeComplexFloatTypeConverter
 
convert(Sampler<? extends DoubleLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.DoubleLongAccessTypeDoubleTypeConverter
 
convert(Sampler<? extends FloatLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.FloatLongAccessTypeFloatTypeConverter
 
convert(Sampler<? extends IntLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.IntLongAccessTypeIntTypeConverter
 
convert(Sampler<? extends LongLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.LongLongAccessTypeLongTypeConverter
 
convert(Sampler<? extends ShortLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.ShortLongAccessTypeShortTypeConverter
 
convert(Sampler<? extends UnsignedByteLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedByteLongAccessTypeUnsignedByteTypeConverter
 
convert(Sampler<? extends UnsignedIntLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedIntLongAccessTypeUnsignedIntTypeConverter
 
convert(Sampler<? extends UnsignedLongLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedLongLongAccessTypeUnsignedLongTypeConverter
 
convert(Sampler<? extends UnsignedShortLongAccessType>) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedShortLongAccessTypeUnsignedShortTypeConverter
 
convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealDoubleSamplerConverter
 
convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealFloatSamplerConverter
 
convert(Sampler<? extends A>) - Method in interface net.imglib2.converter.readwrite.SamplerConverter
 
convert(R, ARGBType) - Method in class net.imglib2.converter.RealARGBConverter
 
convert(R, DoubleType) - Method in class net.imglib2.converter.RealDoubleConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.RealFloatConverter
 
convert(R, ARGBType) - Method in class net.imglib2.converter.RealLUTConverter
 
convert(RandomAccessibleInterval<? extends RealType<?>>, T) - Static method in class net.imglib2.converter.RealTypeConverters
Convert the pixel type of the given image to a given output pixel type.
convert(R, UnsignedByteType) - Method in class net.imglib2.converter.RealUnsignedByteConverter
 
convert(R, UnsignedShortType) - Method in class net.imglib2.converter.RealUnsignedShortConverter
 
convert(T, T) - Method in class net.imglib2.converter.TypeIdentity
 
convert(VolatileRealType<?>, ARGBType) - Method in class net.imglib2.converter.VolatileRealTypeARGBConverter
 
converted - Variable in class net.imglib2.converter.read.BiConvertedCursor
 
converted - Variable in class net.imglib2.converter.read.BiConvertedIterableInterval
 
converted - Variable in class net.imglib2.converter.read.BiConvertedIterableRealInterval
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRandomAccess
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRealCursor
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converted - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedIterableRealInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealCursor
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
ConvertedAccess(ARGBLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter.ConvertedAccess
 
ConvertedAccess(ByteLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter.ConvertedAccess
 
ConvertedAccess(ComplexDoubleLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ComplexDoubleLongAccessTypeComplexDoubleTypeConverter.ConvertedAccess
 
ConvertedAccess(ComplexFloatLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ComplexFloatLongAccessTypeComplexFloatTypeConverter.ConvertedAccess
 
ConvertedAccess(DoubleLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.DoubleLongAccessTypeDoubleTypeConverter.ConvertedAccess
 
ConvertedAccess(FloatLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.FloatLongAccessTypeFloatTypeConverter.ConvertedAccess
 
ConvertedAccess(IntLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.IntLongAccessTypeIntTypeConverter.ConvertedAccess
 
ConvertedAccess(LongLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.LongLongAccessTypeLongTypeConverter.ConvertedAccess
 
ConvertedAccess(ShortLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.ShortLongAccessTypeShortTypeConverter.ConvertedAccess
 
ConvertedAccess(UnsignedByteLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedByteLongAccessTypeUnsignedByteTypeConverter.ConvertedAccess
 
ConvertedAccess(UnsignedIntLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedIntLongAccessTypeUnsignedIntTypeConverter.ConvertedAccess
 
ConvertedAccess(UnsignedLongLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedLongLongAccessTypeUnsignedLongTypeConverter.ConvertedAccess
 
ConvertedAccess(UnsignedShortLongAccessType) - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedShortLongAccessTypeUnsignedShortTypeConverter.ConvertedAccess
 
ConvertedCursor<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedCursor(Cursor<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedCursor
Creates a copy of b for conversion that can be accessed through ConvertedCursor.get().
ConvertedCursor(Cursor<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedCursor
Creates a copy of b for conversion that can be accessed through ConvertedCursor.get().
ConvertedIterableInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedIterableInterval(IterableInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableInterval
Creates a copy of b for conversion.
ConvertedIterableInterval(IterableInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableInterval
Creates a copy of b for conversion.
ConvertedIterableRealInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedIterableRealInterval(IterableRealInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableRealInterval
Creates a copy of b for conversion.
ConvertedIterableRealInterval(IterableRealInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableRealInterval
Creates a copy of b for conversion.
ConvertedRandomAccess<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccess(RandomAccess<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccess
Creates a copy of b for conversion that can be accessed through ConvertedRandomAccess.get().
ConvertedRandomAccess(RandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccess
Use this constructor for stateless functions
ConvertedRandomAccessible<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccessible(RandomAccessible<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessible
 
ConvertedRandomAccessible(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessible
 
ConvertedRandomAccessibleInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
ConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
ConvertedRealCursor<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealCursor(RealCursor<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealCursor
Creates a copy of b for conversion that can be accessed through ConvertedRealCursor.get().
ConvertedRealCursor(RealCursor<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealCursor
Creates a copy of b for conversion that can be accessed through ConvertedRealCursor.get().
ConvertedRealRandomAccess<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccess(RealRandomAccess<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccess
Creates a copy of b for conversion that can be accessed through ConvertedRealRandomAccess.get().
ConvertedRealRandomAccess(RealRandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccess
 
ConvertedRealRandomAccessible<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccessible(RealRandomAccessible<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
ConvertedRealRandomAccessible(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
ConvertedRealRandomAccessibleRealInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
ConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
converter - Variable in class net.imglib2.algorithm.integral.IntegralImg
 
Converter<A,B> - Interface in net.imglib2.converter
This interface is equivalent to the BiConsumer interface and exists for historical reasons only.
converter - Variable in class net.imglib2.converter.read.BiConvertedCursor
 
converter - Variable in class net.imglib2.converter.read.BiConvertedRandomAccess
 
converter - Variable in class net.imglib2.converter.read.BiConvertedRealCursor
 
converter - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
converter - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealCursor
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converter - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
 
converter - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
converter - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
converterListRGBA - Static variable in class net.imglib2.converter.ChannelARGBConverter
ChannelARGBConverter.converterListRGBA can be used in CompositeXYProjector to convert a 4-channel UnsignedByteType into composite ARGBType.
Converters - Class in net.imglib2.converter
Convenience factory methods for sample conversion.
Converters() - Constructor for class net.imglib2.converter.Converters
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedCursor
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedIterableInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedIterableRealInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRandomAccess
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessible
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRealCursor
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
converterSupplier - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedIterableRealInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRealCursor
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
converterSupplier - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
convertFloat(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
convertFloat(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
convertRAI(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, Supplier<Converter<? super A, ? super B>>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, BiConverter<? super A, ? super B, ? super C>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRAI(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, Supplier<BiConverter<? super A, ? super B, ? super C>>, C) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convertRandomAccessibleIterableInterval(S, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
convertRandomAccessibleIterableInterval(S, Supplier<SamplerConverter<? super A, B>>) - Static method in class net.imglib2.converter.Converters
convertToFloat() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
convertToFloat(Img<T>, Converter<T, FloatType>) - Static method in class net.imglib2.img.ImagePlusAdapter
 
ConvexPolytope - Class in net.imglib2.algorithm.kdtree
 
ConvexPolytope(Collection<? extends HyperPlane>) - Constructor for class net.imglib2.algorithm.kdtree.ConvexPolytope
 
ConvexPolytope(HyperPlane...) - Constructor for class net.imglib2.algorithm.kdtree.ConvexPolytope
 
Convolution<T> - Interface in net.imglib2.algorithm.convolution
This interface allows the client to perform a convolution.
convolution(double[]) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolution(double) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolution(Kernel1D...) - Static method in class net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolution
Return an object, that performs the separable convolution with the given kernel.
convolution1d(double, int) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolution1d(Kernel1D, int) - Static method in class net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolution
Apply a convolution only in one dimension.
convolve(double[], RandomAccessible<? extends RealType<?>>, RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolve(double, RandomAccessible<? extends RealType<?>>, RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
convolve(Kernel1D[], RandomAccessible<? extends NumericType<?>>, RandomAccessibleInterval<? extends NumericType<?>>) - Static method in class net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolution
Convolve source with a separable kernel and write the result to output.
convolve(Img<T>, Img<S>) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
convolve(RandomAccessibleInterval<T>, RandomAccessibleInterval<S>, ImgFactory<T>, ImgFactory<S>, ImgFactory<ComplexFloatType>) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
convolve() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
convolve(RandomAccessible<R>, Interval, RandomAccessible<R>, Interval, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
convolve(double[][], RandomAccessible<S>, RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
Deprecated.
Use SeparableKernelConvolution.convolution(Kernel1D[])

Convolve source with a separable symmetric kernel and write the result to output. In-place operation (source==target) is supported.

If the target type T is DoubleType, all calculations are done in double precision. For all other target RealTypes float precision is used. General NumericTypes are computed in their own precision. The source type S and target type T are either both RealTypes or both the same type.

convolve(double[][], RandomAccessible<S>, RandomAccessibleInterval<T>, ConvolverFactory<S, I>, ConvolverFactory<I, I>, ConvolverFactory<I, T>, ConvolverFactory<S, T>, ImgFactory<I>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
Deprecated.
Use SeparableKernelConvolution.convolution(Kernel1D[]). Or LineConvolution and Convolution.concat(net.imglib2.algorithm.convolution.Convolution<T>...).

Convolve source with a separable symmetric kernel and write the result to output. In-place operation (source==target) is supported. Calculations are done in the intermediate type determined by the ConvolverFactories.

convolve(double[][], RandomAccessible<S>, RandomAccessibleInterval<T>, ConvolverFactory<S, I>, ConvolverFactory<I, I>, ConvolverFactory<I, T>, ConvolverFactory<S, T>, ImgFactory<I>, I, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
convolve1d(double[], RandomAccessible<S>, RandomAccessibleInterval<T>, ConvolverFactory<S, T>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
ConvolverFactory<S,T> - Interface in net.imglib2.algorithm.gauss3
Deprecated.
ConvolverFactoryNativeType(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNativeType.ConvolverFactoryNativeType
Deprecated.
 
ConvolverFactoryNativeTypeBuffered(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNativeTypeBuffered.ConvolverFactoryNativeTypeBuffered
Deprecated.
 
ConvolverNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.convolution.kernel
A 1-dimensional line convolver that operates on all NumericType with NativeType representation.
ConvolverNativeType(Kernel1D, RandomAccess<? extends T>, RandomAccess<? extends T>, int, long) - Constructor for class net.imglib2.algorithm.convolution.kernel.ConvolverNativeType
 
ConvolverNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
ConvolverNativeType.ConvolverFactoryNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
 
ConvolverNativeTypeBuffered<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
ConvolverNativeTypeBuffered.ConvolverFactoryNativeTypeBuffered<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
 
ConvolverNumericType<T extends NumericType<T>> - Class in net.imglib2.algorithm.convolution.kernel
A 1-dimensional line convolver that operates on all NumericType.
ConvolverNumericType(Kernel1D, RandomAccess<? extends T>, RandomAccess<? extends T>, int, long) - Constructor for class net.imglib2.algorithm.convolution.kernel.ConvolverNumericType
 
ConvolverNumericType<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
ConvolverNumericType.ConvolverNumericTypeFactory<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
 
ConvolverNumericTypeFactory(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNumericType.ConvolverNumericTypeFactory
Deprecated.
 
coordinates - Variable in class net.imglib2.PointSampleList
 
coordinates - Variable in class net.imglib2.RealPointSampleList
 
copy() - Method in class net.imglib2.AbstractCursor
 
copy() - Method in class net.imglib2.AbstractCursorInt
 
copy() - Method in class net.imglib2.AbstractLocalizingCursor
 
copy() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
copy() - Method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator
 
copy() - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
copy() - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
copy() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.gauss.SamplingLineIterator
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.gradient.ScaleAsFunctionOfPosition.ScaledRandomAccess
 
copy() - Method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
copy() - Method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
copy() - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSquare
 
copy() - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSymmetric
 
copy() - Method in class net.imglib2.algorithm.math.execution.FunctionCursor
 
copy() - Method in class net.imglib2.algorithm.math.execution.FunctionCursorDouble
 
copy() - Method in class net.imglib2.algorithm.math.execution.FunctionCursorDoubleIncompatibleOrder
 
copy() - Method in class net.imglib2.algorithm.math.execution.FunctionCursorIncompatibleOrder
 
copy() - Method in class net.imglib2.algorithm.math.execution.FunctionRandomAccess
 
copy() - Method in class net.imglib2.algorithm.math.execution.FunctionRandomAccessDouble
 
copy() - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
copy(RandomAccessibleInterval<T>, ImgFactory<FloatType>) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Makes a copy of the RandomAccessibleInterval into a new Img of FloatType.
copy() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
copy() - Method in class net.imglib2.algorithm.region.CircleCursor
 
copy() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
copy() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
 
copy() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
copy() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
copy() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
copy() - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
copy() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
copy() - Method in class net.imglib2.converter.read.BiConvertedCursor
 
copy() - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
copy() - Method in class net.imglib2.converter.read.BiConvertedRealCursor
 
copy() - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
copy() - Method in class net.imglib2.converter.read.ConvertedCursor
 
copy() - Method in class net.imglib2.converter.read.ConvertedRandomAccess
 
copy() - Method in class net.imglib2.converter.read.ConvertedRealCursor
 
copy() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedCursor
 
copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
 
copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedRealCursor
 
copy() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
copy() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
copy() - Method in interface net.imglib2.histogram.BinMapper1d
Returns a copy of this BinMapper1d<T>.
copy() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
copy() - Method in class net.imglib2.histogram.Histogram1d
 
copy() - Method in class net.imglib2.histogram.HistogramNd
 
copy() - Method in class net.imglib2.histogram.Integer1dBinMapper
 
copy() - Method in class net.imglib2.histogram.Real1dBinMapper
 
copy() - Method in class net.imglib2.img.array.ArrayCursor
 
copy() - Method in class net.imglib2.img.array.ArrayImg
 
copy() - Method in class net.imglib2.img.array.ArrayLocalizingCursor
copy() - Method in class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
copy() - Method in class net.imglib2.img.array.ArrayRandomAccess
 
copy() - Method in class net.imglib2.img.array.ArraySubIntervalCursor
copy(ByteAccess, int, ByteAccess, int, int) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
Following System.arraycopy(java.lang.Object, int, java.lang.Object, int, int), copies length elements from the specified source access, beginning at the specified position srcPos, to the specified position of the destination array destPos.
copy(CharAccess, int, CharAccess, int, int) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
Following System.arraycopy(java.lang.Object, int, java.lang.Object, int, int), copies length elements from the specified source access, beginning at the specified position srcPos, to the specified position of the destination array destPos.
copy(DoubleAccess, int, DoubleAccess, int, int) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
Following System.arraycopy(java.lang.Object, int, java.lang.Object, int, int), copies length elements from the specified source access, beginning at the specified position srcPos, to the specified position of the destination array destPos.
copy(FloatAccess, int, FloatAccess, int, int) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
Following System.arraycopy(java.lang.Object, int, java.lang.Object, int, int), copies length elements from the specified source access, beginning at the specified position srcPos, to the specified position of the destination array destPos.
copy(IntAccess, int, IntAccess, int, int) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
Following System.arraycopy(java.lang.Object, int, java.lang.Object, int, int), copies length elements from the specified source access, beginning at the specified position srcPos, to the specified position of the destination array destPos.
copy(LongAccess, int, LongAccess, int, int) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
Following System.arraycopy(java.lang.Object, int, java.lang.Object, int, int), copies length elements from the specified source access, beginning at the specified position srcPos, to the specified position of the destination array destPos.
copy(ShortAccess, int, ShortAccess, int, int) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
Following System.arraycopy(java.lang.Object, int, java.lang.Object, int, int), copies length elements from the specified source access, beginning at the specified position srcPos, to the specified position of the destination array destPos.
copy() - Method in class net.imglib2.img.cell.CellCursor
 
copy() - Method in class net.imglib2.img.cell.CellImg
 
copy() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
copy() - Method in class net.imglib2.img.cell.CellRandomAccess
 
copy() - Method in class net.imglib2.img.cell.LazyCellImg
 
copy() - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
copy() - Method in interface net.imglib2.img.Img
 
copy() - Method in class net.imglib2.img.ImgView
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
copy() - Method in class net.imglib2.img.list.ListCursor
 
copy() - Method in class net.imglib2.img.list.ListImg
 
copy() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
copy() - Method in class net.imglib2.img.list.ListRandomAccess
 
copy() - Method in class net.imglib2.img.planar.PlanarCursor
 
copy() - Method in class net.imglib2.img.planar.PlanarImg
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
copy() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
copy() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
copy() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
copy() - Method in class net.imglib2.img.sparse.NtreeCursor
 
copy() - Method in class net.imglib2.img.sparse.NtreeImg
 
copy() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
copy() - Method in class net.imglib2.img.unsafe.UnsafeCursor
 
copy() - Method in class net.imglib2.img.unsafe.UnsafeImg
 
copy() - Method in class net.imglib2.img.unsafe.UnsafeLocalizingCursor
copy() - Method in class net.imglib2.img.unsafe.UnsafeLocalizingSubIntervalCursor
copy() - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
copy() - Method in class net.imglib2.img.unsafe.UnsafeSubIntervalCursor
copy() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
copy() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
copy() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
copy() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
copy() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
copy() - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
copy() - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
copy() - Method in class net.imglib2.KDTree.KDTreeCursor
 
copy() - Method in class net.imglib2.KDTree.SamplerNode
 
copy() - Method in class net.imglib2.KDTree.ValueNode
 
copy() - Method in class net.imglib2.KDTreeNode
 
copy() - Method in interface net.imglib2.labeling.Labeling
Deprecated.
Copy method
copy() - Method in class net.imglib2.labeling.LabelingConvertedCursor
Deprecated.
 
copy() - Method in class net.imglib2.labeling.LabelingConvertedRandomAccess
Deprecated.
 
copy() - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
copy() - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
copy() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
copy() - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Create a copy.
copy() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
copy() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
copy() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Create a copy.
copy() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
copy() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
copy() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
copy() - Method in interface net.imglib2.outofbounds.OutOfBounds
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
copy() - Method in interface net.imglib2.outofbounds.RealOutOfBounds
 
copy() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
copy() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
copy() - Method in class net.imglib2.position.FunctionRandomAccessible.FunctionRandomAccess
 
copy() - Method in class net.imglib2.position.FunctionRealRandomAccessible.RealFunctionRealRandomAccess
 
copy() - Method in class net.imglib2.position.PositionRandomAccessible.PositionRandomAccess
 
copy() - Method in class net.imglib2.position.RealPositionRealRandomAccessible.RealPositionRealRandomAccess
 
copy() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
copy() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
copy() - Method in class net.imglib2.realtransform.AbstractScale
 
copy() - Method in class net.imglib2.realtransform.AbstractTranslation
 
copy() - Method in interface net.imglib2.realtransform.AffineGet
 
copy() - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
copy() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
copy() - Method in class net.imglib2.realtransform.AffineTransform
 
copy() - Method in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
copy() - Method in class net.imglib2.realtransform.AffineTransform2D
 
copy() - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
copy() - Method in class net.imglib2.realtransform.AffineTransform3D
 
copy() - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
copy() - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
copy() - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
copy() - Method in class net.imglib2.realtransform.HomographyTransform2D
 
copy() - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
copy() - Method in interface net.imglib2.realtransform.inverse.DifferentiableRealTransform
 
copy() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
copy() - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
copy() - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
copy() - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
copy() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
copy() - Method in class net.imglib2.realtransform.InversePerspective3D
 
copy() - Method in class net.imglib2.realtransform.InverseRealTransform
 
copy() - Method in interface net.imglib2.realtransform.InvertibleRealTransform
 
copy() - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
copy() - Method in class net.imglib2.realtransform.Perspective3D
 
copy() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
copy() - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
copy() - Method in class net.imglib2.realtransform.PositionFieldTransform
 
copy() - Method in class net.imglib2.realtransform.PositionRandomAccessible.PositionRandomAccess
 
copy() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible.RealPositionRealRandomAccess
 
copy() - Method in interface net.imglib2.realtransform.RealTransform
Create a deep copy of this RealTransform.
copy() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
copy() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
copy() - Method in class net.imglib2.realtransform.RealTransformSequence
 
copy() - Method in class net.imglib2.realtransform.Scale
 
copy() - Method in class net.imglib2.realtransform.Scale2D
 
copy() - Method in class net.imglib2.realtransform.Scale3D
 
copy() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
copy() - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet
 
copy() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
copy() - Method in interface net.imglib2.realtransform.ScaleGet
 
copy() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
copy() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
copy() - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
copy() - Method in class net.imglib2.realtransform.Translation
 
copy() - Method in class net.imglib2.realtransform.Translation2D
 
copy() - Method in class net.imglib2.realtransform.Translation3D
 
copy() - Method in interface net.imglib2.realtransform.TranslationGet
 
copy() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
copy() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
copy() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
copy() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess4
 
copy() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess8
 
copy() - Method in class net.imglib2.roi.labeling.LabelingType
Note: The copy shares the mapping of this LabelingType.
copy() - Method in class net.imglib2.roi.labeling.LabelRegion
Create a copy of this LabelRegion.
copy() - Method in class net.imglib2.roi.labeling.LabelRegionCursor
 
copy() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
copy() - Method in class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
 
copy() - Method in class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
 
copy() - Method in interface net.imglib2.roi.PositionableIterableInterval
Make a copy of this PositionableIterableInterval which can be positioned independently.
copy() - Method in interface net.imglib2.roi.PositionableIterableRegion
 
copy() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
copy() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
copy() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
copy() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
 
copy() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
copy() - Method in class net.imglib2.roi.util.SamplingCursor
 
copy() - Method in interface net.imglib2.Sampler
 
copy() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
copy() - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
copy() - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
copy() - Method in class net.imglib2.type.label.BasePairBitType
 
copy() - Method in class net.imglib2.type.label.BasePairCharType
 
copy() - Method in class net.imglib2.type.logic.BitType
 
copy() - Method in class net.imglib2.type.logic.BoolType
 
copy() - Method in class net.imglib2.type.logic.NativeBoolType
 
copy() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
copy() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.ARGBType
 
copy() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
copy() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
copy() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.integer.ByteType
 
copy() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.integer.IntType
 
copy() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.integer.LongType
 
copy() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.integer.ShortType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
copy() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
copy() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.real.DoubleType
 
copy() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
copy() - Method in class net.imglib2.type.numeric.real.FloatType
 
copy() - Method in interface net.imglib2.type.Type
Creates a new Type variable that has the value of this Type
copy() - Method in class net.imglib2.type.volatiles.VolatileARGBType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileByteType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileDoubleType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileFloatType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileIntType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileLongType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileNumericType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileRealType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileShortType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
copy(double[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
Copy a flat array of doubles into an Img.
copy(float[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(long[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(int[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(boolean[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, double[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
Copy the contents of an Img to a double array
copy(Img<T>, float[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, long[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, int[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, short[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, boolean[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Static method in class net.imglib2.util.ImgUtil
Copy one image into another, multi-threaded.
copy(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A, where A is a matrix.
copy() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
copy() - Method in class net.imglib2.view.composite.NumericComposite
 
copy() - Method in class net.imglib2.view.composite.RealComposite
 
copy() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
copy() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
copy() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
copy() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
copy() - Method in class net.imglib2.view.iteration.SlicingCursor
copy() - Method in class net.imglib2.view.MixedRandomAccess
 
copy() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
copy() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
copy() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
copy() - Method in class net.imglib2.view.SlicingRandomAccess
 
copy() - Method in class net.imglib2.view.StackView.DefaultRA
 
copy() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
copy() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
copy() - Method in class net.imglib2.view.TransformRandomAccess
 
copy() - Method in class net.imglib2.view.TranslationRandomAccess
 
copyAccesses() - Method in class net.imglib2.realtransform.PositionFieldTransform
 
copyAny(Object, int, Object, int, int) - Static method in interface net.imglib2.img.basictypeaccess.Accesses
 
copyCalibrationToImagePlus(ImgPlus<?>, ImagePlus) - Static method in class net.imglib2.img.display.imagej.CalibrationUtils
Sets the Calibration data on the provided ImagePlus.
copyCursor() - Method in class net.imglib2.AbstractCursor
 
copyCursor() - Method in class net.imglib2.AbstractCursorInt
 
copyCursor() - Method in class net.imglib2.AbstractLocalizingCursor
 
copyCursor() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
copyCursor() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.algorithm.math.execution.FunctionCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
copyCursor() - Method in class net.imglib2.algorithm.region.CircleCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
copyCursor() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
copyCursor() - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
copyCursor() - Method in interface net.imglib2.Cursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArraySubIntervalCursor
 
copyCursor() - Method in class net.imglib2.img.cell.CellCursor
 
copyCursor() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
copyCursor() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.list.ListCursor
 
copyCursor() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
copyCursor() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
copyCursor() - Method in class net.imglib2.img.sparse.NtreeCursor
 
copyCursor() - Method in class net.imglib2.img.unsafe.UnsafeCursor
 
copyCursor() - Method in class net.imglib2.img.unsafe.UnsafeLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.unsafe.UnsafeLocalizingSubIntervalCursor
 
copyCursor() - Method in class net.imglib2.img.unsafe.UnsafeSubIntervalCursor
 
copyCursor() - Method in class net.imglib2.KDTree.KDTreeCursor
 
copyCursor() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
copyCursor() - Method in interface net.imglib2.RealCursor
 
copyCursor() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
copyCursor() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.roi.labeling.LabelRegionCursor
 
copyCursor() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
copyCursor() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
copyCursor() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.roi.util.SamplingCursor
 
copyCursor() - Method in class net.imglib2.view.iteration.SlicingCursor
copyCursor() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
copyDataTo(AbstractCellImg<T, ?, ?, ?>) - Method in class net.imglib2.img.cell.AbstractCellImg
 
copyFromTo(RandomAccessible<? extends RealType<?>>, RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.converter.RealTypeConverters
Copy the image content from a source image to a destination image.
copyOrThis() - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions
 
copyOrThis() - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions
 
copyRandomAccess() - Method in class net.imglib2.algorithm.math.execution.FunctionRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.math.execution.FunctionRandomAccessDouble
 
copyRandomAccess() - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.array.ArrayRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.cell.CellRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.list.ListRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
copyRandomAccess() - Method in class net.imglib2.position.FunctionRandomAccessible.FunctionRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.position.PositionRandomAccessible.PositionRandomAccess
 
copyRandomAccess() - Method in interface net.imglib2.RandomAccess
 
copyRandomAccess() - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.realtransform.PositionRandomAccessible.PositionRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.MixedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
copyRandomAccess() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.SlicingRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.StackView.DefaultRA
 
copyRandomAccess() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
copyRandomAccess() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.TransformRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.TranslationRandomAccess
 
copyRealRandomAccess() - Method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.position.FunctionRealRandomAccessible.RealFunctionRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.position.RealPositionRealRandomAccessible.RealPositionRealRandomAccess
 
copyRealRandomAccess() - Method in interface net.imglib2.RealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible.RealPositionRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
copyRealRandomAccess() - Method in class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
 
corner1 - Variable in class net.imglib2.transform.integer.BoundingBox
 
corner1(long[]) - Method in class net.imglib2.transform.integer.BoundingBox
 
corner2 - Variable in class net.imglib2.transform.integer.BoundingBox
 
corner2(long[]) - Method in class net.imglib2.transform.integer.BoundingBox
 
count - Variable in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
countColumns() - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
countData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Counts the data contained in the given data source using the underlying bin distribution.
countData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts the data contained in the given data source using the underlying bin distribution.
countData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts the data contained in the given data source using the underlying bin distribution.
countRows() - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
countTrue(RandomAccessibleInterval<B>) - Static method in class net.imglib2.roi.Regions
Counts the number of true pixels in the given region.
cov() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
Covariance of the pixel positions in the region.
create(RandomAccessibleInterval<T>) - Method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator
 
create(RandomAccessibleInterval<T>, RealInterval) - Method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator
 
create(RandomAccessible<T>) - Method in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
create(long...) - Method in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory.LazyCellImgFactory
 
create(long[], S) - Method in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory.LazyCellImgFactory
 
create(double[], RandomAccess<S>, RandomAccess<T>, int, long) - Method in interface net.imglib2.algorithm.gauss3.ConvolverFactory
Deprecated.
Create a 1-dimensional line convolver.
create(double[], RandomAccess<T>, RandomAccess<T>, int, long) - Method in class net.imglib2.algorithm.gauss3.ConvolverNativeType.ConvolverFactoryNativeType
Deprecated.
 
create(double[], RandomAccess<T>, RandomAccess<T>, int, long) - Method in class net.imglib2.algorithm.gauss3.ConvolverNativeTypeBuffered.ConvolverFactoryNativeTypeBuffered
Deprecated.
 
create(double[], RandomAccess<T>, RandomAccess<T>, int, long) - Method in class net.imglib2.algorithm.gauss3.ConvolverNumericType.ConvolverNumericTypeFactory
Deprecated.
 
create(RandomAccessible<T>) - Method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
create(RandomAccessible<T>) - Method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolatorFactory
create(long[], long, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.DiamondNeighborhoodFactory
 
create(long[], long, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodFactory
 
create(long[], long, int, boolean, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodFactory
 
create(long[], long, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodFactory
 
create(long[], long[], RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodFactory
 
create(long[], long, int[], RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodFactory
 
create(long[], long[], long[], Interval, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.RectangleNeighborhoodFactory
 
create(long...) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(Dimensions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(int[]) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(long[], DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(Dimensions, DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(long[], CellLoader<T>) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(Dimensions, CellLoader<T>) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(long[], CellLoader<T>, DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(Dimensions, CellLoader<T>, DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
create(long[], T) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
Deprecated.
create(long[], T, DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
Deprecated.
create(long[], T, CellLoader<T>) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
Deprecated.
create(long[], T, CellLoader<T>, DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
Deprecated.
create(long[], T, CellLoader<T>) - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgFactory
 
create(long[], T, CellLoader<T>, ReadOnlyCachedCellImgOptions) - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgFactory
 
create(long...) - Method in class net.imglib2.img.array.ArrayImgFactory
 
create(Dimensions) - Method in class net.imglib2.img.array.ArrayImgFactory
 
create(int[]) - Method in class net.imglib2.img.array.ArrayImgFactory
 
create(long[], T) - Method in class net.imglib2.img.array.ArrayImgFactory
Deprecated.
create(long) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil
 
create(long...) - Method in class net.imglib2.img.cell.CellImgFactory
 
create(Dimensions) - Method in class net.imglib2.img.cell.CellImgFactory
 
create(int[]) - Method in class net.imglib2.img.cell.CellImgFactory
 
create(long[], T) - Method in class net.imglib2.img.cell.CellImgFactory
Deprecated.
create(long...) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
create(Dimensions) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
create(int[]) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
create(long[], T) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
Deprecated.
create(long...) - Method in class net.imglib2.img.ImgFactory
Create an Img<T> with the specified dimensions.
create(Dimensions) - Method in class net.imglib2.img.ImgFactory
Create an Img<T> with the specified dimensions.
create(int[]) - Method in class net.imglib2.img.ImgFactory
Create an Img<T> with the specified dimensions.
create(long[], T) - Method in class net.imglib2.img.ImgFactory
Deprecated.
create(Dimensions, T) - Method in class net.imglib2.img.ImgFactory
Deprecated.
create(int[], T) - Method in class net.imglib2.img.ImgFactory
Deprecated.
create(Supplier<T>, long...) - Method in class net.imglib2.img.ImgFactory
Deprecated.
create(Supplier<T>, Dimensions) - Method in class net.imglib2.img.ImgFactory
Deprecated.
create(Supplier<T>, int[]) - Method in class net.imglib2.img.ImgFactory
Deprecated.
create(long...) - Method in class net.imglib2.img.list.ListImgFactory
 
create(Dimensions) - Method in class net.imglib2.img.list.ListImgFactory
 
create(int[]) - Method in class net.imglib2.img.list.ListImgFactory
 
create(long[], T) - Method in class net.imglib2.img.list.ListImgFactory
Deprecated.
create(long...) - Method in class net.imglib2.img.NativeImgFactory
Create a NativeImg with the specified dimensions.
create(Dimensions) - Method in class net.imglib2.img.NativeImgFactory
Create an Img<T> with the specified dimensions.
create(int[]) - Method in class net.imglib2.img.NativeImgFactory
Create an Img<T> with the specified dimensions.
create(long[], T) - Method in class net.imglib2.img.NativeImgFactory
Deprecated.
create(long[], T) - Method in class net.imglib2.img.NativeLongAccessImgFactory
This class will ask the Type to create a suitable Img for the Type and the dimensionality.
create(long...) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
create(Dimensions) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
create(int[]) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
create(long[], T) - Method in class net.imglib2.img.planar.PlanarImgFactory
Deprecated.
create(long...) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
create(Dimensions) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
create(int[]) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
create(long[], T) - Method in class net.imglib2.img.sparse.NtreeImgFactory
Deprecated.
create(long[], T) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
create(long...) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
create(F) - Method in interface net.imglib2.interpolation.InterpolatorFactory
 
create(F, RealInterval) - Method in interface net.imglib2.interpolation.InterpolatorFactory
 
create(KNearestNeighborSearch<T>) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
Creates a new InverseDistanceWeightingInterpolator using a copy of the passed KNearestNeighborSearch.
create(KNearestNeighborSearch<T>, RealInterval) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
Creates a new InverseDistanceWeightingInterpolator using a copy of the passed KNearestNeighborSearch.
create(NearestNeighborSearch<T>) - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
Creates a new NearestNeighborSearchInterpolator using a copy of the passed NearestNeighborSearch.
create(NearestNeighborSearch<T>, RealInterval) - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
Creates a new NearestNeighborSearchInterpolator using a copy of the passed NearestNeighborSearch.
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorFactory
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
create(RandomAccessible<ARGBType>) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
 
create(RandomAccessible<ARGBType>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
create(F) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolatorFactory
 
create(F, RealInterval) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolatorFactory
 
create(F) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolatorFactory
 
create(F, RealInterval) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolatorFactory
 
create(Interval) - Static method in class net.imglib2.iterator.IntervalIterator
 
create(long[]) - Method in class net.imglib2.labeling.LabelingFactory
Deprecated.
 
create(int[]) - Method in class net.imglib2.labeling.LabelingFactory
Deprecated.
 
create(Interval) - Method in class net.imglib2.labeling.LabelingFactory
Deprecated.
 
create(F) - Method in class net.imglib2.labeling.LabelingOutOfBoundsRandomAccessFactory
Deprecated.
 
create(List<? extends Positionable>) - Static method in class net.imglib2.loops.SyncedPositionables
 
create(Positionable...) - Static method in class net.imglib2.loops.SyncedPositionables
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsBorderFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
create(F) - Method in interface net.imglib2.outofbounds.OutOfBoundsFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodicFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
create(F) - Method in interface net.imglib2.outofbounds.RealOutOfBoundsFactory
 
create(RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
create(IterableInterval<Void>, RandomAccessible<T>) - Static method in class net.imglib2.roi.util.SamplingIterableInterval
 
create(RandomAccess<T>) - Method in interface net.imglib2.view.composite.CompositeFactory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.GenericComposite.Factory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.NumericComposite.Factory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.RealComposite.Factory
 
create(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.IterableRandomAccessibleInterval
 
createAccess(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
createAccess(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
createAccess(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
createAccess(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
createAccess(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
createAccess(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
createAccess(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
createAccess(long) - Method in interface net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccess
 
createAllocationSteps(long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
Create allocation step array from the dimensions of an N-dimensional array.
createAllocationSteps(int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
Create allocation step array from the dimensions of an N-dimensional array.
CreateAndCropBlockToFitInterval(int[], long[]) - Constructor for class net.imglib2.algorithm.util.Grids.CreateAndCropBlockToFitInterval
 
CreateAndCropBlockToFitInterval(int[], Interval) - Constructor for class net.imglib2.algorithm.util.Grids.CreateAndCropBlockToFitInterval
Convenience constructor for Interval.
createAndStart() - Static method in class net.imglib2.util.StopWatch
Construct and start a new StopWatch.
createAppropriateResultImg(RandomAccessibleInterval<T>, ImgFactory<U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
Create appropriately sized image for tensor input.
createAppropriateResultImg(RandomAccessibleInterval<T>, ImgFactory<U>, U) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
createArray(int) - Method in interface net.imglib2.img.basictypeaccess.array.ArrayDataAccess
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.BooleanArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.ByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.CharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyBooleanArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.FloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.IntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.LongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.ShortArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileBooleanArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileBooleanArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
 
createArray(int, boolean) - Method in interface net.imglib2.img.basictypeaccess.volatiles.VolatileArrayDataAccess
 
createArray(int) - Method in class net.imglib2.img.io.proxyaccess.ByteAccessProxy
 
createArray(int) - Method in class net.imglib2.img.io.proxyaccess.FloatAccessProxy
 
createArray(int) - Method in class net.imglib2.img.io.proxyaccess.IntAccessProxy
 
createArray(int) - Method in class net.imglib2.img.io.proxyaccess.LongAccessProxy
 
createArray(int) - Method in class net.imglib2.img.io.proxyaccess.ShortAccessProxy
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.NativeLongAccessImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.NativeLongAccessImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
createComponent(T) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent.Generator
Create a new empty component with the given value (e.g., grey-level).
createDataBuffer(A) - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
createDataBuffer(ByteArray) - Method in class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
createDataBuffer(DoubleArray) - Method in class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
 
createDataBuffer(FloatArray) - Method in class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
 
createDataBuffer(IntArray) - Method in class net.imglib2.display.screenimage.awt.IntAWTScreenImage
 
createDataBuffer(ShortArray) - Method in class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
 
createDataBuffer(ByteArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
 
createDataBuffer(IntArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
 
createDataBuffer(ShortArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.NativeLongAccessImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
createErrorDiffusionKernel(int) - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
createExecutorService() - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
Utility function to create an ExecutorService Number of threads utilized matches available processors in runtime.
createExecutorService(int) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
Utility function to create an ExecutorService
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.NativeLongAccessImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
createGaussianKernel(ImgFactory<FloatType>, double, int) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
createGaussianKernel(ImgFactory<FloatType>, double[]) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
createGaussianKernel1DDouble(double, boolean) - Static method in class net.imglib2.util.Util
This method creates a gaussian kernel
createImageProcessor(Object, int, int, ColorModel) - Static method in class net.imglib2.img.display.imagej.ImageProcessorUtils
Creates an ImageProcessor.
createImg(Object, int, int) - Static method in class net.imglib2.img.display.imagej.ImageProcessorUtils
Creates a two dimensional Img that wraps around the array given as pixels.
createInputLineSampler(int, Interval) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
An Iterator that samples a one dimensional line of input data for the current dimension.
createInstance(long[]) - Method in class net.imglib2.img.sparse.BooleanNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.ByteNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.CharNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.DoubleNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.FloatNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.IntNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.LongNtree
 
createInstance(long[]) - Method in interface net.imglib2.img.sparse.NtreeAccess
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.ShortNtree
 
createIntervalLoop(Positionable, Dimensions, Runnable) - Static method in class net.imglib2.loops.LoopUtils
Returns a Runnable containing a loop.
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.NativeLongAccessImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
CreateInvalid<K,V> - Interface in net.imglib2.cache.volatiles
 
createInvalid(K) - Method in interface net.imglib2.cache.volatiles.CreateInvalid
 
createInverse() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
createIterableRegionOfInterest(T) - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
createIterableRegionOfInterest(T) - Method in interface net.imglib2.labeling.LabelingROIStrategy
Deprecated.
An iterable region of interest, optimized for iteration over the pixels in the region of interest.
createLabelingROIStrategy(L) - Method in class net.imglib2.labeling.DefaultROIStrategyFactory
Deprecated.
 
createLabelingROIStrategy(L) - Method in interface net.imglib2.labeling.LabelingROIStrategyFactory
Deprecated.
 
createLineLoop(Positionable, long, int, Runnable) - Static method in class net.imglib2.loops.LoopUtils
Returns a loop, that moves the given positonable along a line, and executes the given operation for each pixel of the line.
createLinkedType() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
createLinkedType() - Method in class net.imglib2.img.AbstractNativeImg
 
createLinkedType() - Method in class net.imglib2.img.AbstractNativeLongAccessImg
 
createLinkedType() - Method in interface net.imglib2.img.NativeImg
 
createLinkedType() - Method in interface net.imglib2.img.NativeLongAccessImg
 
createLinkedType(NativeLongAccessImg<T, ? extends A>) - Method in class net.imglib2.type.NativeLongAccessTypeFactory
Creates a new T instance which is linked to img.
createLinkedType(NativeImg<T, ? extends A>) - Method in class net.imglib2.type.NativeTypeFactory
Creates a new T instance which is linked to img.
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.NativeLongAccessImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
createLoop(Object, List<? extends Cursor<?>>) - Static method in class net.imglib2.loops.FastCursorLoops
For example.: Given a BiConsumer and two Cursors:
createMaxComponent() - Method in interface net.imglib2.algorithm.componenttree.PartialComponent.Generator
Create a component with a value (e.g., grey-level) greater than any occurring in the input for the BuildComponentTree.
createMinMax(long...) - Static method in class net.imglib2.FinalInterval
Create a FinalInterval from a parameter list comprising minimum and maximum coordinates.
createMinMax(double...) - Static method in class net.imglib2.FinalRealInterval
Create a FinalRealInterval from a parameter list comprising minimum and maximum coordinates.
createMinMax(long...) - Static method in class net.imglib2.util.Intervals
Create a FinalInterval from a parameter list comprising minimum and maximum coordinates.
createMinMaxReal(double...) - Static method in class net.imglib2.util.Intervals
Create a FinalRealInterval from a parameter list comprising minimum and maximum coordinates.
createMinSize(long...) - Static method in class net.imglib2.FinalInterval
Create a FinalInterval from a parameter list comprising minimum coordinates and size.
createMinSize(long[], long[]) - Static method in class net.imglib2.FinalInterval
Create an Interval with the given minimum coordinates and size.
createMinSize(double...) - Static method in class net.imglib2.FinalRealInterval
Deprecated.
createMinSize(long...) - Static method in class net.imglib2.util.Intervals
Create a FinalInterval from a parameter list comprising minimum coordinates and size.
createMinSizeReal(double...) - Static method in class net.imglib2.util.Intervals
Deprecated.
createNtreeAccess(NativeTypeFactory<?, ? super A>, long[]) - Static method in class net.imglib2.img.sparse.NtreeImgFactory
 
createOutputLineWriter(int, Interval, SamplingLineIterator<T>) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
An Iterator that samples a one dimensional line of output data for the current dimension.
createRegionOfInterest(T) - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
createRegionOfInterest(T) - Method in interface net.imglib2.labeling.LabelingROIStrategy
Deprecated.
A region of interest designed to be queried for point-membership
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.NativeLongAccessImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
createStopped() - Static method in class net.imglib2.util.StopWatch
Construct new StopWatch.
createSuitableNativeImg(NativeLongAccessImgFactory<T>, long[]) - Method in interface net.imglib2.type.NativeLongAccessType
The NativeLongAccessType creates the NativeLongAccessImg used for storing image data; based on the given storage strategy and its size.
createSuitableNativeImg(NativeLongAccessImgFactory<ARGBLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<ComplexDoubleLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<ComplexFloatLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<ByteLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<IntLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<LongLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<ShortLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<UnsignedByteLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<UnsignedIntLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<UnsignedLongLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<UnsignedShortLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<DoubleLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
createSuitableNativeImg(NativeLongAccessImgFactory<FloatLongAccessType>, long[]) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
createTempDirectory(Path, String, boolean) - Static method in class net.imglib2.cache.img.DiskCellCache
Creates a new directory in the specified directory, using the given prefix to generate its name.
createTempDirectory(String, boolean) - Static method in class net.imglib2.cache.img.DiskCellCache
Creates a new directory in the default temporary-file directory, using the given prefix to generate its name.
createVariable() - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
createVariable() - Method in class net.imglib2.roi.labeling.LabelingType
Note: This creates an "independent" LabelingType instance that has its own LabelingMapping.
createVariable(Class<? extends L>) - Method in class net.imglib2.roi.labeling.LabelingType
Creates a new LabelingType based on the underlying IntegerType of the existing LabelingType with a different label type L
createVariable() - Method in class net.imglib2.type.label.BasePairBitType
 
createVariable() - Method in class net.imglib2.type.label.BasePairCharType
 
createVariable() - Method in class net.imglib2.type.logic.BitType
 
createVariable() - Method in class net.imglib2.type.logic.BoolType
 
createVariable() - Method in class net.imglib2.type.logic.NativeBoolType
 
createVariable() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.ARGBType
 
createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.ByteType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.IntType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.LongType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.ShortType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
createVariable() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.real.DoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
createVariable() - Method in class net.imglib2.type.numeric.real.FloatType
 
createVariable() - Method in interface net.imglib2.type.Type
Creates a new Type variable which can only store one value.
createVariable() - Method in class net.imglib2.type.volatiles.VolatileARGBType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileByteType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileDoubleType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileFloatType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileIntType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileLongType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileNumericType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileRealType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileShortType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
createVariable() - Method in class net.imglib2.view.composite.NumericComposite
Generates a 1D ArrayImg<T>
createVariable() - Method in class net.imglib2.view.composite.RealComposite
Generates a 1D ArrayImg<T>
createWithCacheLoader(long[], CacheLoader<Long, Cell<A>>) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
createWithCacheLoader(Dimensions, CacheLoader<Long, Cell<A>>) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
createWithCacheLoader(long[], CacheLoader<Long, Cell<A>>, DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
createWithCacheLoader(Dimensions, CacheLoader<Long, Cell<A>>, DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
createWithCacheLoader(long[], T, CacheLoader<Long, Cell<A>>) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
Deprecated.
createWithCacheLoader(long[], T, CacheLoader<Long, Cell<A>>, DiskCachedCellImgOptions) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
Deprecated.
createWithCacheLoader(long[], T, CacheLoader<Long, Cell<A>>) - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgFactory
 
createWithCacheLoader(long[], T, CacheLoader<Long, Cell<A>>, ReadOnlyCachedCellImgOptions) - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgFactory
 
crop(int, int, int, int, int, int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
croppedIntervalAndGridPosition(long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
 
croppedIntervalAndGridPosition(long[], long[], int[]) - Static method in class net.imglib2.algorithm.util.Grids
Convenience method to create Function that maps a block minimum into a Pair of Interval and long[] that specify the block and its position in grid coordinates.
cross(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute cross product, set c = a ^ b.
cubicCardinalSpline(double, int) - Static method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
cubicTo(double, double, double, double, double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
cubicTo(double, double, double, double, double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler
Deprecated.
 
curr - Variable in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
currentCellMax - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
currentCellMax - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentCellMin - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
currentCellMin - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentCellSteps - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentConverters - Variable in class net.imglib2.display.projector.composite.CompositeXYProjector
 
currentConverters - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
currentMax - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
currentMin - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
currentOffset - Variable in class net.imglib2.roi.util.PositionableInterval
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
currentPositions - Variable in class net.imglib2.display.projector.composite.CompositeXYProjector
 
currentPositions - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
cursor(Converter<RealType<?>, C>, C, O, Converter<C, O>) - Method in class net.imglib2.algorithm.math.Compute
 
cursor(C, O) - Method in class net.imglib2.algorithm.math.Compute
 
cursor(O) - Method in class net.imglib2.algorithm.math.Compute
 
cursor() - Method in class net.imglib2.algorithm.math.Compute
Returns a Cursor with the same type as the first input image found.
cursor - Variable in class net.imglib2.algorithm.math.execution.FunctionCursor
 
cursor() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
cursor() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunctionDouble
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenterUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
 
cursor() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRealInterval
 
cursor() - Method in class net.imglib2.converter.read.BiConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.read.BiConvertedIterableRealInterval
 
cursor() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.read.ConvertedIterableRealInterval
 
cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRealInterval
 
Cursor<T> - Interface in net.imglib2
A Cursor iterates over a set of Localizable elements, for example the image values at the (integer) pixel positions of an image.
cursor() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
cursor() - Method in class net.imglib2.histogram.Histogram1d
 
cursor() - Method in class net.imglib2.histogram.HistogramNd
 
cursor() - Method in class net.imglib2.img.array.ArrayImg
 
cursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
Create a Cursor to iterate over the given Interval.
cursor() - Method in class net.imglib2.img.cell.AbstractCellImg
 
cursor() - Method in class net.imglib2.img.ImgView
 
cursor(Interval) - Method in class net.imglib2.img.ImgView
 
cursor() - Method in class net.imglib2.img.list.AbstractListImg
 
cursor() - Method in class net.imglib2.img.list.AbstractLongListImg
 
cursor() - Method in class net.imglib2.img.planar.PlanarImg
 
cursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Create a Cursor to iterate over the given Interval.
cursor() - Method in class net.imglib2.img.sparse.NtreeImg
 
cursor() - Method in class net.imglib2.img.unsafe.UnsafeImg
 
cursor(Interval) - Method in class net.imglib2.img.unsafe.UnsafeImg
Create a Cursor to iterate over the given Interval.
cursor() - Method in interface net.imglib2.IterableInterval
 
cursor() - Method in interface net.imglib2.IterableRealInterval
Returns a RealCursor that iterates with optimal speed without calculating the location at each iteration step.
cursor() - Method in class net.imglib2.KDTree
 
cursor() - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
cursor(Interval) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
cursor() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
cursor(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
cursor() - Method in class net.imglib2.PointSampleList
 
cursor() - Method in class net.imglib2.RealPointSampleList
 
cursor() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
cursor() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
cursor() - Method in class net.imglib2.roi.boundary.Boundary
 
cursor() - Method in class net.imglib2.roi.geom.integer.IterableLine
 
cursor() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
cursor(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
 
cursor() - Method in class net.imglib2.roi.labeling.LabelRegion
 
cursor() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
cursor() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
cursor() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
cursor() - Method in class net.imglib2.roi.util.SamplingIterableInterval
 
cursor() - Method in class net.imglib2.view.IntervalView
 
cursor() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
cursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Create a Cursor to iterate over the given Interval.
cursorDouble(O, Converter<RealType<?>, O>) - Method in class net.imglib2.algorithm.math.Compute
 
cursorDouble(O) - Method in class net.imglib2.algorithm.math.Compute
 
cursorDouble() - Method in class net.imglib2.algorithm.math.Compute
Returns a Cursor with the same type as the first input image found.
cursorOnCells - Variable in class net.imglib2.img.cell.CellCursor
 
cursorOnCells - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 

D

D - Variable in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
The diffusion tensor.
d(int) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
d(int) - Method in class net.imglib2.realtransform.AbstractScale
 
d(int) - Method in class net.imglib2.realtransform.AbstractTranslation
 
d(int) - Method in interface net.imglib2.realtransform.AffineGet
Get the constant partial differential vector for dimension d.
d(int) - Method in class net.imglib2.realtransform.AffineTransform2D
 
d(int) - Method in class net.imglib2.realtransform.AffineTransform3D
 
d(int) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
d - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
d - Variable in class net.imglib2.view.composite.AbstractComposite
 
d0 - Variable in class net.imglib2.realtransform.AffineTransform2D
 
d0 - Variable in class net.imglib2.realtransform.AffineTransform3D
 
d1 - Variable in class net.imglib2.realtransform.AffineTransform2D
 
d1 - Variable in class net.imglib2.realtransform.AffineTransform3D
 
d2 - Variable in class net.imglib2.realtransform.AffineTransform3D
 
DarkToBright() - Constructor for class net.imglib2.algorithm.componenttree.BuildComponentTree.DarkToBright
 
data - Variable in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
data - Variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.IntArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.ShortArray
 
dataAccess - Variable in class net.imglib2.type.AbstractBitType
 
dataAccess - Variable in class net.imglib2.type.label.BasePairCharType
 
dataAccess - Variable in class net.imglib2.type.logic.BitType
 
dataAccess - Variable in class net.imglib2.type.logic.NativeBoolType
 
dataAccess - Variable in class net.imglib2.type.numeric.ARGBLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.ARGBType
 
dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexFloatType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericByteType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericIntType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericLongType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericShortType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
dataAccess - Variable in class net.imglib2.type.numeric.NativeARGBDoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.real.DoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.real.FloatLongAccessType
 
dataAccess - Variable in class net.imglib2.type.numeric.real.FloatType
 
dec() - Method in class net.imglib2.type.Index
Decrement the index.
dec(int) - Method in class net.imglib2.type.Index
Decrease the index by decrement steps.
dec() - Method in class net.imglib2.type.logic.BitType
 
dec() - Method in class net.imglib2.type.logic.NativeBoolType
 
dec() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
dec() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
dec() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
dec() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
dec() - Method in class net.imglib2.type.numeric.real.FloatType
 
dec() - Method in interface net.imglib2.type.numeric.RealType
 
dec() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
decIndex() - Method in class net.imglib2.type.AbstractNativeLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.AbstractNativeLongAccessType
 
decIndex() - Method in interface net.imglib2.type.NativeLongAccessType
 
decIndex(long) - Method in interface net.imglib2.type.NativeLongAccessType
Decrease the index into the current data array by decrement steps.
decIndex() - Method in interface net.imglib2.type.NativeType
Deprecated.
Use index().dec() instead. If possible, request the index() object only once and re-use it.
decIndex(int) - Method in interface net.imglib2.type.NativeType
Deprecated.
Use index().dec(int) instead. If possible, request the index() object only once and re-use it.
decIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
decIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
decIndex() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
decIndex() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
decIndex(long) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
decrement(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Decrements the frequency count of a specified bin.
decrement(long) - Method in class net.imglib2.histogram.Histogram1d
Directly decrement a bin by position.
decrement(T) - Method in class net.imglib2.histogram.Histogram1d
Directly decrement a bin by value,
decrement(long[]) - Method in class net.imglib2.histogram.HistogramNd
Directly decrement a bin by position.
decrement(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Directly decrement a bin by value,
DEFAULT_IS_VALID - Static variable in class net.imglib2.img.basictypelongaccess.unsafe.AbstractStridedUnsafeLongAccess
 
DEFAULT_THETA - Static variable in class net.imglib2.algorithm.hough.HoughTransforms
 
DefaultBinaryCompositeMask - Class in net.imglib2.roi.composite
A Mask which is the result of an operation on two Predicates.
DefaultBinaryCompositeMask(Operators.BinaryMaskOperator, Predicate<? super Localizable>, Predicate<? super Localizable>, int, BoundaryType, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
DefaultBinaryCompositeMaskInterval - Class in net.imglib2.roi.composite
A MaskInterval which results from an operation on two Predicates.
DefaultBinaryCompositeMaskInterval(Operators.BinaryMaskOperator, Predicate<? super Localizable>, Predicate<? super Localizable>, Interval, BoundaryType, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
DefaultBinaryCompositeRealMask - Class in net.imglib2.roi.composite
A RealMask which is the result of an operation on two Predicates.
DefaultBinaryCompositeRealMask(Operators.BinaryMaskOperator, Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>, int, BoundaryType, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
DefaultBinaryCompositeRealMaskRealInterval - Class in net.imglib2.roi.composite
A RealMaskRealInterval which results from an operation on two Predicates.
DefaultBinaryCompositeRealMaskRealInterval(Operators.BinaryMaskOperator, Predicate<? super RealLocalizable>, Predicate<? super RealLocalizable>, RealInterval, BoundaryType, BinaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
DefaultMask - Class in net.imglib2.roi.mask.integer
 
DefaultMask(int, BoundaryType, Predicate<? super Localizable>, KnownConstant) - Constructor for class net.imglib2.roi.mask.integer.DefaultMask
 
DefaultMaskInterval - Class in net.imglib2.roi.mask.integer
 
DefaultMaskInterval(Interval, BoundaryType, Predicate<? super Localizable>, KnownConstant) - Constructor for class net.imglib2.roi.mask.integer.DefaultMaskInterval
 
defaultParallelismThreshold - Static variable in interface net.imglib2.cache.Invalidate
TODO: Should do some benchmarks.
DefaultRA(RandomAccessibleInterval<T>[]) - Constructor for class net.imglib2.view.StackView.DefaultRA
 
DefaultRA(RandomAccessibleInterval<T>[], Interval) - Constructor for class net.imglib2.view.StackView.DefaultRA
 
DefaultRealMask - Class in net.imglib2.roi.mask.real
 
DefaultRealMask(int, BoundaryType, Predicate<? super RealLocalizable>, KnownConstant) - Constructor for class net.imglib2.roi.mask.real.DefaultRealMask
 
DefaultRealMaskRealInterval - Class in net.imglib2.roi.mask.real
 
DefaultRealMaskRealInterval(RealInterval, BoundaryType, Predicate<? super RealLocalizable>, KnownConstant) - Constructor for class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
 
DefaultROIStrategy<T extends Comparable<T>,L extends Labeling<T>> - Class in net.imglib2.labeling
Deprecated.
DefaultROIStrategy(L) - Constructor for class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
DefaultROIStrategyFactory<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
DefaultROIStrategyFactory() - Constructor for class net.imglib2.labeling.DefaultROIStrategyFactory
Deprecated.
 
DefaultTaskExecutor - Class in net.imglib2.parallel
A TaskExecutor that wraps around a given ExecutorService.
DefaultTaskExecutor(ExecutorService) - Constructor for class net.imglib2.parallel.DefaultTaskExecutor
 
DefaultUnaryCompositeMask - Class in net.imglib2.roi.composite
A Mask which is the result of an operation on a Predicate.
DefaultUnaryCompositeMask(Operators.UnaryMaskOperator, Predicate<? super Localizable>, int, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
DefaultUnaryCompositeMaskInterval - Class in net.imglib2.roi.composite
A MaskInterval which is the result of an operation on a Predicate.
DefaultUnaryCompositeMaskInterval(Operators.UnaryMaskOperator, Predicate<? super Localizable>, Interval, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
DefaultUnaryCompositeRealMask - Class in net.imglib2.roi.composite
A RealMask which is the result of an operation on a Predicate.
DefaultUnaryCompositeRealMask(Operators.UnaryMaskOperator, Predicate<? super RealLocalizable>, int, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
DefaultUnaryCompositeRealMaskRealInterval - Class in net.imglib2.roi.composite
A RealMaskRealInterval which is the result of an operation on a Predicate.
DefaultUnaryCompositeRealMaskRealInterval(Operators.UnaryMaskOperator, Predicate<? super RealLocalizable>, RealInterval, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
DefaultWritableLine - Class in net.imglib2.roi.geom.real
Represents a line segment as defined by two end points, which can be embedded in n-dimensional space.
DefaultWritableLine(RealLocalizable, RealLocalizable) - Constructor for class net.imglib2.roi.geom.real.DefaultWritableLine
Creates a line with endpoints at the given positions.
DefaultWritableLine(double[], double[], boolean) - Constructor for class net.imglib2.roi.geom.real.DefaultWritableLine
Creates a line with endpoints at the given positions.
DefaultWritablePointMask - Class in net.imglib2.roi.geom.real
A WritablePointMask specified by the given location.
DefaultWritablePointMask(RealLocalizable) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePointMask
Creates a WritablePointMask with the given point, such that only that point is contained in the Mask.
DefaultWritablePointMask(double[]) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePointMask
Creates a WritablePointMask with given array, such that only that location is contained in the Mask.
DefaultWritablePolygon2D - Class in net.imglib2.roi.geom.real
A DefaultWritablePolygon2D defined by the given vertices.
DefaultWritablePolygon2D(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
Creates a 2D polygon with the provided vertices.
DefaultWritablePolygon2D(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
Creates a 2D polygon with vertices at the provided x, y coordinates.
DefaultWritablePolygon2D.VertexList - Class in net.imglib2.roi.geom.real
 
DefaultWritablePolyline - Class in net.imglib2.roi.geom.real
A polyline, which can be embedded in n-dimensional space.
DefaultWritablePolyline(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolyline
Creates a polyline with the specified vertices.
DefaultWritableRealPointCollection<L extends RealLocalizable> - Class in net.imglib2.roi.geom.real
RealPointCollection backed by a Map.
DefaultWritableRealPointCollection(Map<TDoubleArrayList, L>) - Constructor for class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
Creates a point collection which includes points in the given Map.
DefaultWritableRealPointCollection(Collection<L>) - Constructor for class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
Creates a point collection which includes points in the given Collection.
DeformationFieldTransform<T extends RealType<T>> - Class in net.imglib2.realtransform
A RealTransform by continuous offset lookup.
DeformationFieldTransform(RealRandomAccess<T>...) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform
 
DeformationFieldTransform(RealRandomAccessible<T>...) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform
 
DeformationFieldTransform(RandomAccessibleInterval<T>...) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform
 
DeformationFieldTransform(OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, InterpolatorFactory<T, RandomAccessible<T>>, RandomAccessibleInterval<T>...) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform
 
deleteCacheDirectoryOnExit(boolean) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions
Specify whether the cell cache directory should be automatically deleted when the virtual machine shuts down.
deleteCacheDirectoryOnExit() - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
deleteLastSlice() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
deleteSlice(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
depth - Variable in class net.imglib2.img.imageplus.ImagePlusImg
 
det() - Method in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
det() - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
det3x3(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
Calculates the determinant of a 3x3 matrix given as a double[] (row major).
det3x3(double, double, double, double, double, double, double, double, double) - Static method in class net.imglib2.util.LinAlgHelpers
Calculate the determinant of a 3x3 matrix.
dfd() - Method in class net.imglib2.histogram.Histogram1d
Get the discrete frequency distribution associated with this histogram.
dfd() - Method in class net.imglib2.histogram.HistogramNd
Get the discrete frequency distribution associated with this histogram.
diamond(int, int) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a centered flat diamond structuring element for morphological operations.
diamond(int, int, boolean) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a centered flat diamond structuring element for morphological operations.
DiamondNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodCursor(RandomAccessibleInterval<T>, long, DiamondNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
DiamondNeighborhoodCursor(DiamondNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
DiamondNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodLocalizableSampler(RandomAccessible<T>, long, DiamondNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
DiamondNeighborhoodLocalizableSampler(DiamondNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
DiamondNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodRandomAccess(RandomAccessible<T>, long, DiamondNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
DiamondNeighborhoodRandomAccess(RandomAccessible<T>, long, DiamondNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
DiamondNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondShape - Class in net.imglib2.algorithm.neighborhood
TODO
DiamondShape(long) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondShape
Constructor
DiamondShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
A Neighborhood that iterates through the tips of a multi-dimensional diamond.
DiamondTipsNeighborhood(long[], long, RandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
Creates a new diamond tip neighborhood.
DiamondTipsNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodCursor(RandomAccessibleInterval<T>, long, DiamondTipsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
DiamondTipsNeighborhoodCursor(DiamondTipsNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
DiamondTipsNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodLocalizableSampler(RandomAccessible<T>, long, DiamondTipsNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
DiamondTipsNeighborhoodLocalizableSampler(DiamondTipsNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
DiamondTipsNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodRandomAccess(RandomAccessible<T>, long, DiamondTipsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
DiamondTipsNeighborhoodRandomAccess(RandomAccessible<T>, long, DiamondTipsNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
DiamondTipsNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsShape - Class in net.imglib2.algorithm.neighborhood
TODO
DiamondTipsShape(long) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsShape
Constructor
DiamondTipsShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 
DifferenceOfGaussian - Class in net.imglib2.algorithm.dog
Compute Difference-of-Gaussian of a RandomAccessible.
DifferenceOfGaussian() - Constructor for class net.imglib2.algorithm.dog.DifferenceOfGaussian
 
DifferentiableRealTransform - Interface in net.imglib2.realtransform.inverse
Transformation that can explicitly compute its derivative (jacobian).
differentiableTransform - Variable in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
Compute the float increment of the current location, for which is given the density neighborhood and the diffusion tensor neighborhood.
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
Compute the float increment of the current location, for which is given the density neighborhood and the diffusion tensor neighborhood.
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme2D
 
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme3D
 
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.StandardDiffusionScheme2D
 
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.StandardDiffusionScheme3D
 
dilate(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
dilate(Img<T>, List<? extends Shape>, T, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on an Img using a list of Shapes as a flat structuring element.
dilate(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType Img using a Shape as a flat structuring element.
dilate(Img<T>, Shape, T, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on an Img using a Shape as a flat structuring element.
dilate(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType RandomAccessible as a source and writing results in an IterableInterval.
dilate(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, using a RandomAccessible as a source and writing results in an IterableInterval.
dilate(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType RandomAccessible as a source and writing results in an IterableInterval.
dilate(RandomAccessible<T>, IterableInterval<T>, Shape, T, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, using a RandomAccessible as a source and writing results in an IterableInterval.
dilateFull(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
dilateFull(Img<T>, List<? extends Shape>, T, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on an Img using a list of Shapes as a flat structuring element.
dilateFull(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
dilateFull(Img<T>, Shape, T, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on an Img using a list of Shapes as a flat structuring element.
dilateInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
dilateInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, T, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
dilateInPlace(RandomAccessibleInterval<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
dilateInPlace(RandomAccessibleInterval<T>, Interval, Shape, T, int) - Static method in class net.imglib2.algorithm.morphology.Dilation
Performs the dilation morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
Dilation - Class in net.imglib2.algorithm.morphology
 
dim - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
dim - Variable in class net.imglib2.img.list.AbstractListImg
 
DimComparator(int) - Constructor for class net.imglib2.KDTree.DimComparator
 
dimension(int) - Method in class net.imglib2.AbstractInterval
 
dimension(int) - Method in class net.imglib2.AbstractWrappedInterval
 
dimension(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
dimension(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
dimension(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
dimension(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
dimension(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
dimension(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
dimension(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
dimension(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
dimension(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
dimension(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
dimension(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
dimension(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
dimension(int) - Method in interface net.imglib2.Dimensions
Get the number of pixels in a given dimension d.
dimension(int) - Method in class net.imglib2.FinalDimensions
 
dimension(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
dimension(int) - Method in class net.imglib2.histogram.Histogram1d
Return the size of the given dimension of the frequency distribution of this histogram.
dimension(int) - Method in class net.imglib2.histogram.HistogramNd
Return the size of the given dimension of the frequency distribution of this histogram.
dimension - Variable in class net.imglib2.img.AbstractImg
 
dimension(int) - Method in class net.imglib2.img.AbstractImg
 
dimension(int) - Method in class net.imglib2.img.cell.Cell
Get the number of pixels in a given dimension d.
dimension(int) - Method in interface net.imglib2.Interval
Default implementation of Dimensions.dimension(int).
dimension(int) - Method in class net.imglib2.iterator.IntervalIterator
 
dimension - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Dimensions of the wrapped RandomAccessible.
dimension - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
dimension - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
Dimensions of the wrapped RandomAccessible.
dimension(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
dimension(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
dimension(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
dimension(int) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
dimension(int) - Method in class net.imglib2.roi.labeling.LabelRegion
 
dimension(int) - Method in class net.imglib2.roi.util.PositionableInterval
 
dimension(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
dimension(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
dimensions(long[]) - Method in class net.imglib2.AbstractInterval
 
dimensions(long[]) - Method in class net.imglib2.AbstractWrappedInterval
 
dimensions(IFunction) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
dimensions(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
dimensions(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
dimensions(long[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
dimensions(long[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
dimensions(long[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
dimensions(long[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
dimensions(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
dimensions(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
dimensions(long[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
dimensions(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
dimensions(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
dimensions(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
Dimensions - Interface in net.imglib2
Defines an extent in n-dimensional discrete space.
dimensions(long[]) - Method in interface net.imglib2.Dimensions
Write the number of pixels in each dimension into long[].
dimensions(Positionable) - Method in interface net.imglib2.Dimensions
Write the number of pixels in each dimension into Positionable.
dimensions(long[]) - Method in class net.imglib2.FinalDimensions
 
dimensions(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
dimensions(long[]) - Method in class net.imglib2.histogram.Histogram1d
Fill the provided long[] with the sizes of all dimensions of the frequency distribution of this histogram.
dimensions(long[]) - Method in class net.imglib2.histogram.HistogramNd
Fill the provided long[] with the sizes of all dimensions of the frequency distribution of this histogram.
dimensions(long[]) - Method in class net.imglib2.img.AbstractImg
 
dimensions - Variable in class net.imglib2.img.cell.Cell
 
dimensions(int[]) - Method in class net.imglib2.img.cell.Cell
Write the number of pixels in each dimension into int[].
dimensions - Variable in class net.imglib2.img.cell.CellRandomAccess
 
dimensions - Variable in class net.imglib2.img.io.proxyaccess.AbstractAccessProxy
 
dimensions - Variable in class net.imglib2.img.planar.PlanarImg
 
dimensions - Variable in class net.imglib2.iterator.IntervalIterator
 
dimensions(long[]) - Method in class net.imglib2.iterator.IntervalIterator
 
dimensions(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
dimensions(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
dimensions(long[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
dimensions(long[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
dimensions(long[]) - Method in class net.imglib2.roi.labeling.LabelRegion
 
dimensions(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
dimensions(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
dimensions - Variable in class net.imglib2.view.SubsampleIntervalView
 
dimensions(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
dimensionsAsIntArray(Dimensions) - Static method in class net.imglib2.util.Intervals
Create a int[] with the dimensions of an Interval.
dimensionsAsLongArray() - Method in interface net.imglib2.Dimensions
Allocates a new long array with the dimensions of this object.
dimensionsAsLongArray(Dimensions) - Static method in class net.imglib2.util.Intervals
Create a long[] with the dimensions of a Dimensions.
dimensionsAsPoint() - Method in interface net.imglib2.Dimensions
Allocates a new Point with the dimensions of this object.
dimensionsComplexToComplexFast(Dimensions, long[]) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes the supported dimensionality of an input dataset (of complex numbers) for a forward/inverse FFT of the entire dataset AS FAST AS POSSIBLE
dimensionsComplexToComplexSmall(Dimensions, long[]) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes the supported dimensionality of an input dataset (of complex numbers) for a forward/inverse FFT of the entire dataset AS SMALL AS POSSIBLE
dimensionsComplexToRealFast(Dimensions, long[], long[]) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes the supported dimensionality of an input dataset (of complex numbers) for an inverse FFT of the entire dataset AS FAST AS POSSIBLE
dimensionsComplexToRealSmall(Dimensions, long[], long[]) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes the supported dimensionality of an input dataset (of complex numbers) for an inverse FFT of the entire dataset AS SMALL AS POSSIBLE
dimensionsEqual(Interval, long[]) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
A helper method to test if padding is actually necessary
dimensionsEqual(Dimensions, Dimensions) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
A helper method to test if padding is actually necessary
dimensionsRealToComplexFast(Dimensions, long[], long[]) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes the supported dimensionality of an input dataset (of real numbers) for a forward FFT of the entire dataset AS FAST AS POSSIBLE
dimensionsRealToComplexSmall(Dimensions, long[], long[]) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes the supported dimensionality of an input dataset (of real numbers) for a forward FFT of the entire dataset AS SMALL AS POSSIBLE
dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
dimIsOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
dimX - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
dimY - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
directionToward(double[], double[], double[]) - Method in class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform
Writes the direction displacement in which to move the input source point x in order that F( x + d ) is closer to the destination point y than F( x ).
directionToward(AffineTransform, double[], double[], double[]) - Static method in class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform
 
directionToward(double[], double[], double[]) - Method in interface net.imglib2.realtransform.inverse.DifferentiableRealTransform
Writes the direction displacement in which to move the input source point x in order that F( x + d ) is closer to the destination point y than F( x ).
dirMag() - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
Dirty - Interface in net.imglib2
Interface for objects that can be flagged dirty (useful for access objects that track if their content was modified)
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyBooleanArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileBooleanArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
dirty - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
dirtyAccesses(boolean) - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions
Specify whether the image should use Dirty accesses.
dirtyAccesses() - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions.Values
 
dirtyAccesses(boolean) - Method in interface net.imglib2.cache.img.optional.AccessOptions
Specify whether the image should use Dirty accesses.
dirtyAccesses() - Method in interface net.imglib2.cache.img.optional.AccessOptions.Val
 
DirtyBooleanArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyBooleanArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyBooleanArray
 
DirtyBooleanArray(boolean[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyBooleanArray
 
DirtyByteArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
DirtyByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
dirtyByteArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyByteArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyByteArrayType
 
DirtyCharArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
DirtyCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
dirtyCharArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyCharArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyCharArrayType
 
DirtyDiskCellCache<A extends Dirty> - Class in net.imglib2.cache.img
TODO
DirtyDiskCellCache(Path, CellGrid, CacheLoader<Long, Cell<A>>, AccessIo<A>, Fraction) - Constructor for class net.imglib2.cache.img.DirtyDiskCellCache
 
DirtyDoubleArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
DirtyDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
dirtyDoubleArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyDoubleArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyDoubleArrayType
 
DirtyFloatArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
DirtyFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
dirtyFloatArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyFloatArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyFloatArrayType
 
DirtyIntArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
DirtyIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
dirtyIntArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyIntArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyIntArrayType
 
DirtyLongArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
DirtyLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
dirtyLongArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyLongArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyLongArrayType
 
DirtyShortArray - Class in net.imglib2.img.basictypeaccess.array
 
DirtyShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
DirtyShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
dirtyShortArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyShortArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyShortArrayType
 
DirtyVolatileBooleanArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileBooleanArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileBooleanArray
 
DirtyVolatileBooleanArray(boolean[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileBooleanArray
 
DirtyVolatileByteArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
DirtyVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
dirtyVolatileByteArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyVolatileByteArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyVolatileByteArrayType
 
DirtyVolatileCharArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
DirtyVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
dirtyVolatileCharArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyVolatileCharArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyVolatileCharArrayType
 
DirtyVolatileDoubleArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
DirtyVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
dirtyVolatileDoubleArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyVolatileDoubleArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyVolatileDoubleArrayType
 
DirtyVolatileFloatArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
DirtyVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
dirtyVolatileFloatArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyVolatileFloatArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyVolatileFloatArrayType
 
DirtyVolatileIntArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
DirtyVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
dirtyVolatileIntArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyVolatileIntArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyVolatileIntArrayType
 
DirtyVolatileLongArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
DirtyVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
dirtyVolatileLongArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyVolatileLongArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyVolatileLongArrayType
 
DirtyVolatileShortArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
DirtyVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
DirtyVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
dirtyVolatileShortArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DirtyVolatileShortArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DirtyVolatileShortArrayType
 
discard() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.AbstractOwningUnsafe
 
discard() - Method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil.OwningUnsafe
 
discrete - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
 
DiscreteFrequencyDistribution - Class in net.imglib2.histogram
This class represents an n-dimensional set of counters.
DiscreteFrequencyDistribution(long[]) - Constructor for class net.imglib2.histogram.DiscreteFrequencyDistribution
Construct an n-dimensional counter with the given number of bins
DiscreteFrequencyDistribution(Img<LongType>) - Constructor for class net.imglib2.histogram.DiscreteFrequencyDistribution
Construct an n-dimensional counter using a provided Img<LongType> to store counts.
disk(long, int) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a centered disk flat structuring element for morphological operations.
disk(long, int, int) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a centered disk flat structuring element for morphological operations.
DiskCachedCellImg<T extends NativeType<T>,A> - Class in net.imglib2.cache.img
A LazyCellImg that creates empty Cells lazily when they are accessed and stores (modified) Cells in a disk cache when memory runs full.
DiskCachedCellImg(DiskCachedCellImgFactory<T>, CellGrid, Fraction, Cache<Long, Cell<A>>, IoSync, A) - Constructor for class net.imglib2.cache.img.DiskCachedCellImg
 
DiskCachedCellImgFactory<T extends NativeType<T>> - Class in net.imglib2.cache.img
Factory for creating DiskCachedCellImgs.
DiskCachedCellImgFactory(T) - Constructor for class net.imglib2.cache.img.DiskCachedCellImgFactory
Create a new DiskCachedCellImgFactory with default configuration.
DiskCachedCellImgFactory(T, DiskCachedCellImgOptions) - Constructor for class net.imglib2.cache.img.DiskCachedCellImgFactory
Create a new DiskCachedCellImgFactory with the specified configuration.
DiskCachedCellImgFactory() - Constructor for class net.imglib2.cache.img.DiskCachedCellImgFactory
Deprecated.
DiskCachedCellImgFactory(DiskCachedCellImgOptions) - Constructor for class net.imglib2.cache.img.DiskCachedCellImgFactory
Deprecated.
DiskCachedCellImgOptions - Class in net.imglib2.cache.img
Optional parameters for constructing a DiskCachedCellImgFactory.
DiskCachedCellImgOptions() - Constructor for class net.imglib2.cache.img.DiskCachedCellImgOptions
 
DiskCachedCellImgOptions.Values - Class in net.imglib2.cache.img
 
DiskCacheOptions<T> - Interface in net.imglib2.cache.img.optional
Optional arguments that specify the properties of the disk cache for DiskCachedCellImg.
DiskCacheOptions.Val - Interface in net.imglib2.cache.img.optional
 
DiskCellCache<A> - Class in net.imglib2.cache.img
Basic CacheRemover/CacheLoader for writing/reading cells to a disk cache.
DiskCellCache(Path, CellGrid, CacheLoader<Long, Cell<A>>, AccessIo<A>, Fraction) - Constructor for class net.imglib2.cache.img.DiskCellCache
 
Distance - Interface in net.imglib2.algorithm.morphology.distance
Family of strictly convex, real valued functions that are separable in all dimension.
distance(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
get the length of (a - b).
distance(RealLocalizable, RealLocalizable) - Static method in class net.imglib2.util.Util
 
distance(long[], long[]) - Static method in class net.imglib2.util.Util
 
distancePowered(RealLocalizable) - Method in class net.imglib2.roi.geom.real.AbstractWritableEllipsoid
Computes the unit distance squared between a given location and the center of the ellipsoid.
distancePowered(RealLocalizable) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
distancePowered(RealLocalizable) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
Computes the unit distance between a given location and the center of the superellipsoid.
DistanceTransform - Class in net.imglib2.algorithm.morphology.distance
ImgLib2 implementation of n-dimensional distance transform D of sampled functions f with distance measure d: Distance Transforms of Sampled Functions (DOI:ch 10.4086/toc.2012.v008a019).
DistanceTransform() - Constructor for class net.imglib2.algorithm.morphology.distance.DistanceTransform
 
DistanceTransform.DISTANCE_TYPE - Enum in net.imglib2.algorithm.morphology.distance
Switch for calling convenience method with pre-defined distances.
distributionCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of all values in the distribution: lower tail + middle + upper tail.
distributionCount(int, long) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of all values in the specified dimension of the distribution: lower tail + middle + upper tail.
distributionCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of all values in the distribution: lower tail + middle + upper tail.
Div - Class in net.imglib2.algorithm.math
 
Div(Object, Object) - Constructor for class net.imglib2.algorithm.math.Div
 
Div(Object...) - Constructor for class net.imglib2.algorithm.math.Div
 
div(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
div(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
div(BitType) - Method in class net.imglib2.type.logic.BitType
 
div(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
div(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
div(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
div(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
div(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
div(ComplexFloatLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
div(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
div(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
div(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
div(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
div(UnsignedByteLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
div(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
div(UnsignedIntLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
div(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
div(UnsignedLongLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
div(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
div(UnsignedShortLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
div(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
div(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
div(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
div(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
Div<T> - Interface in net.imglib2.type.operators
 
div(T) - Method in interface net.imglib2.type.operators.Div
 
div(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
div(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
div(Fraction) - Method in class net.imglib2.util.Fraction
 
div(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
divide(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
Unsigned division of d1 by d2.
divide(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongType
Unsigned division of d1 by d2.
divideIntoChunks(long, int) - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
Division<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Division(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Division
 
DoG(double[], double[], RandomAccessible<I>, RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.algorithm.dog.DifferenceOfGaussian
Compute the difference of Gaussian for the input.
DoG(double[], double[], RandomAccessible<I>, RandomAccessible<T>, RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.algorithm.dog.DifferenceOfGaussian
Compute the difference of Gaussian for the input.
DogDetection<T extends RealType<T> & NativeType<T>> - Class in net.imglib2.algorithm.dog
 
DogDetection(RandomAccessibleInterval<T>, double[], double, double, DogDetection.ExtremaType, double, boolean) - Constructor for class net.imglib2.algorithm.dog.DogDetection
 
DogDetection(RandomAccessible<T>, Interval, double[], double, double, DogDetection.ExtremaType, double, boolean) - Constructor for class net.imglib2.algorithm.dog.DogDetection
Sets up a DogDetection with the specified parameters (does not do any computation yet).
DogDetection(RandomAccessible<T>, Interval, double[], double, double, DogDetection.ExtremaType, double, boolean, F) - Constructor for class net.imglib2.algorithm.dog.DogDetection
Sets up a DogDetection with the specified parameters (does not do any computation yet).
DogDetection.ExtremaType - Enum in net.imglib2.algorithm.dog
 
DogDetection.TypedDogDetection<F extends RealType<F> & NativeType<F>> - Class in net.imglib2.algorithm.dog
 
dogImg - Variable in class net.imglib2.algorithm.dog.DogDetection.TypedDogDetection
 
dot(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute dot product a * b.
DOUBLE(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
DOUBLE(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
DoubleAccess - Interface in net.imglib2.img.basictypeaccess
TODO
DoubleArray - Class in net.imglib2.img.basictypeaccess.array
TODO
DoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.DoubleArray
 
DoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.DoubleArray
 
doubleArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
DoubleArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.DoubleArrayType
 
DoubleAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<DoubleType, DoubleArray> .
DoubleAWTScreenImage(ArrayImg<DoubleType, DoubleArray>) - Constructor for class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
 
DoubleAWTScreenImage(DoubleType, DoubleArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
 
doubleCollection(IterableInterval<? extends RealType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a RealType iterable image as a collection.
DoubleConvolverRealType - Class in net.imglib2.algorithm.convolution.kernel
A 1-dimensional line convolver that operates on all RealType.
DoubleConvolverRealType(Kernel1D, RandomAccess<? extends RealType<?>>, RandomAccess<? extends RealType<?>>, int, long) - Constructor for class net.imglib2.algorithm.convolution.kernel.DoubleConvolverRealType
 
DoubleConvolverRealType<S extends RealType<S>,T extends RealType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
DoubleConvolverRealTypeBuffered<S extends RealType<S>,T extends RealType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
doubleList(RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a RealType random-accessible image as a list.
DoubleLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
DoubleLongAccessType - Class in net.imglib2.type.numeric.real
 
DoubleLongAccessType(NativeLongAccessImg<?, ? extends DoubleLongAccess>) - Constructor for class net.imglib2.type.numeric.real.DoubleLongAccessType
 
DoubleLongAccessType(double) - Constructor for class net.imglib2.type.numeric.real.DoubleLongAccessType
 
DoubleLongAccessType(DoubleLongAccess) - Constructor for class net.imglib2.type.numeric.real.DoubleLongAccessType
 
DoubleLongAccessType() - Constructor for class net.imglib2.type.numeric.real.DoubleLongAccessType
 
DoubleLongAccessTypeDoubleTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
DoubleLongAccessTypeDoubleTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.DoubleLongAccessTypeDoubleTypeConverter
 
DoubleLongAccessTypeDoubleTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
DoubleNtree - Class in net.imglib2.img.sparse
DoubleAccess based on a Ntree.
DoubleNtree(long[], long[], double) - Constructor for class net.imglib2.img.sparse.DoubleNtree
 
doubles(long...) - Static method in class net.imglib2.img.array.ArrayImgs
doubles(double[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<DoubleType, DoubleArray> reusing a passed double[] array.
doubles(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<DoubleType, DoubleAccess> using a DoubleAccess passed as argument.
doubles(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
doubles(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
doubles(DoubleUnsafe, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<DoubleType, DoubleArray> reusing a passed double[] array.
DoubleType - Class in net.imglib2.type.numeric.real
TODO
DoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.real.DoubleType
 
DoubleType(double) - Constructor for class net.imglib2.type.numeric.real.DoubleType
 
DoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.real.DoubleType
 
DoubleType() - Constructor for class net.imglib2.type.numeric.real.DoubleType
 
DoubleUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
DoubleUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
DoubleUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
DoubleUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
DoubleUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
doubleValue(long, long) - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
drawSphere(double, int, int, int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
dropSingletonDimensions(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Removes all unit dimensions (dimensions with size one) from the RandomAccessibleInterval
ds - Variable in class net.imglib2.realtransform.AbstractAffineTransform
 
ds - Variable in class net.imglib2.realtransform.AbstractScale
 
ds - Variable in class net.imglib2.realtransform.AbstractTranslation
 
ds - Variable in class net.imglib2.realtransform.AffineTransform2D
 
ds - Variable in class net.imglib2.realtransform.AffineTransform3D
 
DummySolver - Class in net.imglib2.algorithm.localization
A dummy FunctionFitter that simply skips the fitting process and leaves the starting estimate untouched.
DummySolver() - Constructor for class net.imglib2.algorithm.localization.DummySolver
 
duplicate() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.label.BasePairBitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.label.BasePairCharType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.logic.BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.logic.NativeBoolType
 
duplicateTypeOnSameNativeImg() - Method in interface net.imglib2.type.NativeLongAccessType
Creates a new NativeType which stores in the same physical array.
duplicateTypeOnSameNativeImg() - Method in interface net.imglib2.type.NativeType
Creates a new NativeType which stores in the same physical array.
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.ARGBType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.ByteType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.IntType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.LongType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.ShortType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.real.DoubleType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.numeric.real.FloatType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileARGBType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileByteType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileDoubleType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileFloatType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileIntType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileLongType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileShortType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
duplicateTypeOnSameNativeImg() - Method in class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
dxfm - Variable in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 

E

Edgel - Class in net.imglib2.algorithm.edge
An oriented point representing a sub-pixel localized segment of a (hyper-)edge.
Edgel(double[], double[], double) - Constructor for class net.imglib2.algorithm.edge.Edgel
Create an edgel.
edgeValuesPerBin(int, double, double) - Static method in class net.imglib2.util.Binning
Returns array of left edge values for each bin.
EigenValues<T extends RealType<T>,U extends ComplexType<U>> - Interface in net.imglib2.algorithm.linalg.eigen
Interface for handling different cases, e.g.
EigenValues1D<T extends RealType<T>,U extends ComplexType<U>> - Class in net.imglib2.algorithm.linalg.eigen
 
EigenValues1D() - Constructor for class net.imglib2.algorithm.linalg.eigen.EigenValues1D
 
EigenValues2DSquare<T extends RealType<T>,U extends ComplexType<U>> - Class in net.imglib2.algorithm.linalg.eigen
 
EigenValues2DSquare() - Constructor for class net.imglib2.algorithm.linalg.eigen.EigenValues2DSquare
 
EigenValues2DSymmetric<T extends RealType<T>,U extends ComplexType<U>> - Class in net.imglib2.algorithm.linalg.eigen
 
EigenValues2DSymmetric() - Constructor for class net.imglib2.algorithm.linalg.eigen.EigenValues2DSymmetric
 
EigenValuesSquare<T extends RealType<T>,U extends ComplexType<U>> - Class in net.imglib2.algorithm.linalg.eigen
 
EigenValuesSquare(int) - Constructor for class net.imglib2.algorithm.linalg.eigen.EigenValuesSquare
 
EigenValuesSymmetric<T extends RealType<T>,U extends ComplexType<U>> - Class in net.imglib2.algorithm.linalg.eigen
 
EigenValuesSymmetric(int) - Constructor for class net.imglib2.algorithm.linalg.eigen.EigenValuesSymmetric
 
element - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
elements - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
EllipseCursor<T> - Class in net.imglib2.algorithm.region
Iterates over a Bresenham 2D ellipse using the mid-point algorithm.
EllipseCursor(RandomAccessible<T>, Localizable, long, long) - Constructor for class net.imglib2.algorithm.region.EllipseCursor
Iterates over a Bresenham ellipse in the target RandomAccessible.
EllipseCursor(RandomAccessible<T>, Localizable, long, long, int, int) - Constructor for class net.imglib2.algorithm.region.EllipseCursor
Iterates over a Bresenham ellipse in the target RandomAccessible.
EllipseCursor<T> - Class in net.imglib2.algorithm.region.localneighborhood
 
EllipseCursor(AbstractNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
Construct a EllipseCursor on an image
EllipseNeighborhood<T> - Class in net.imglib2.algorithm.region.localneighborhood
 
EllipseNeighborhood(RandomAccessibleInterval<T>, long[], long[], OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
EllipseNeighborhood(RandomAccessibleInterval<T>, long[], long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
EllipseRegionOfInterest - Class in net.imglib2.roi
Deprecated.
EllipseRegionOfInterest() - Constructor for class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Constructor of a 2-dimensional ellipse centered at the origin with radius 0.
EllipseRegionOfInterest(int) - Constructor for class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Constructor of an N-dimensional hyper-ellipse centered at the origin with radius 0.
EllipseRegionOfInterest(RealLocalizable, double[]) - Constructor for class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Construct an N-dimensional hyper-ellipse centered at the origin with a given radius.
EllipseRegionOfInterest(RealLocalizable) - Constructor for class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Construct an N-dimensional hyper-ellipse centered at an origin with zero radius
EllipseRegionOfInterest(RealLocalizable, double) - Constructor for class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Construct a hyper-circle centered at an origin with the same radius for all dimensions.
Ellipses - Class in net.imglib2.algorithm.region
Write ellipses in an image using the midpoint algorithm.
Ellipsoid - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines an n-d ellipsoid.
EllipsoidCursor<T> - Class in net.imglib2.algorithm.region.localneighborhood
This class implements a Cursor that iterates over all the pixel within the volume of a 3D ellipsoid.
EllipsoidCursor(AbstractNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
EllipsoidNeighborhood<T> - Class in net.imglib2.algorithm.region.localneighborhood
This class implements a IterableInterval representing the volume of a 3D ellipsoid.
EllipsoidNeighborhood(RandomAccessibleInterval<T>, long[], long[], OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
EllipsoidNeighborhood(RandomAccessibleInterval<T>, long[], long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
EllipticGaussianOrtho - Class in net.imglib2.algorithm.localization
A n-dimensional Gaussian peak function, representing an elliptical Gaussian, with axis constrained to be aligned with the main axis.
EllipticGaussianOrtho() - Constructor for class net.imglib2.algorithm.localization.EllipticGaussianOrtho
 
Else - Class in net.imglib2.algorithm.math
A class that exists merely for coding readability.
Else(Object) - Constructor for class net.imglib2.algorithm.math.Else
 
ELSE(Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
emit(MserPartialComponent<T>) - Method in class net.imglib2.algorithm.componenttree.mser.MserTree
 
emit(C) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent.Handler
BuildComponentTree calls this for every completed component.
emit(PixelListPartialComponent<T>) - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
 
EmptyCellCacheLoader<A extends ArrayDataAccess<A>> - Class in net.imglib2.cache.img
A CacheLoader that produces empty cells of ArrayDataAccess type A, with the correct dimensions, etc.
EmptyCellCacheLoader(CellGrid, Fraction, A) - Constructor for class net.imglib2.cache.img.EmptyCellCacheLoader
 
emptyInterval(int) - Static method in class net.imglib2.roi.Masks
Creates an Interval which has min > max for all dimensions.
emptyList() - Method in class net.imglib2.labeling.LabelingMapping
Deprecated.
 
emptyMask(int) - Static method in class net.imglib2.roi.Masks
Creates a Mask which returns false for every location.
emptyMaskInterval(int) - Static method in class net.imglib2.roi.Masks
Creates a MaskInterval which returns false for every location and has empty interval bounds (i.e.
emptyRealInterval(int) - Static method in class net.imglib2.roi.Masks
Creates an RealInterval which has min > max for all dimensions.
emptyRealMask(int) - Static method in class net.imglib2.roi.Masks
Creates a RealMask which returns false for every location.
emptyRealMaskRealInterval(int) - Static method in class net.imglib2.roi.Masks
Creates a RealMaskRealInterval which returns false for every location and has empty interval bounds (i.e.
emptyScreenImage(T, long[]) - Static method in class net.imglib2.display.screenimage.awt.AWTScreenImageUtil
Get an appropriate AWTScreenImage given a type and the dimensionality of the incoming image.
emptySet() - Method in class net.imglib2.roi.labeling.LabelingMapping
 
endpointOne() - Method in class net.imglib2.roi.geom.real.DefaultWritableLine
Returns a RealLocalizableRealPositionable positioned at the same location as the first location passed to the constructor.
endpointOne() - Method in interface net.imglib2.roi.geom.real.Line
Returns the first endpoint.
endpointOne() - Method in interface net.imglib2.roi.geom.real.WritableLine
 
Endpoints - Class in net.imglib2.algorithm.morphology.table2d
Removes all pixels except the ones that are at the end of a skeleton.
Endpoints() - Constructor for class net.imglib2.algorithm.morphology.table2d.Endpoints
 
endpoints(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Endpoints
 
endpoints(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Endpoints
 
endpointTwo() - Method in class net.imglib2.roi.geom.real.DefaultWritableLine
Returns a RealLocalizableRealPositionable positioned at the same location as the second location passed to the constructor.
endpointTwo() - Method in interface net.imglib2.roi.geom.real.Line
Returns the second endpoint.
endpointTwo() - Method in interface net.imglib2.roi.geom.real.WritableLine
 
entitiesPerPixel - Variable in class net.imglib2.img.AbstractNativeImg
 
entitiesPerPixel - Variable in class net.imglib2.img.AbstractNativeLongAccessImg
 
epsilon - Variable in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
EQ(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Equal - Class in net.imglib2.algorithm.math
 
Equal(Object, Object) - Constructor for class net.imglib2.algorithm.math.Equal
 
equal(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
equalDimensions(Dimensions, Dimensions) - Static method in class net.imglib2.util.Intervals
Tests whether two Dimensions have the same size.
equalDimensions(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Deprecated.
equalIterationOrder(IterableInterval<?>...) - Static method in class net.imglib2.util.Util
Checks whether n IterableInterval have the same iteration order.
Equality<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Equality(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Equality
 
equals(Object) - Method in class net.imglib2.cache.volatiles.CacheHints
 
equals(Object) - Method in class net.imglib2.FinalDimensions
 
equals(Object) - Method in class net.imglib2.FinalInterval
 
equals(Object) - Method in class net.imglib2.FinalRealInterval
 
equals(Object) - Method in class net.imglib2.FlatIterationOrder
Two Intervals are considered to have same iteration order if two Cursors return the same position in each iteration step, excluding dimensions of size 1.
equals(Object) - Method in class net.imglib2.img.cell.CellGrid
 
equals(Object) - Method in class net.imglib2.img.cell.CellIterationOrder
To be equal an object has to be a CellIterationOrder on a CellImg of the same dimensions and cell-dimensions.
equals(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
equals(Object) - Method in class net.imglib2.Point
 
equals(Object) - Method in class net.imglib2.RealPoint
 
equals(Object) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterationOrder
Deprecated.
 
equals(Object) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder
Deprecated.
 
equals(Object) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
equals(Object) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
equals(Object) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
equals(Object) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
equals(Object) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
equals(Object) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
equals(Object) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
equals(Object) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
equals(Object) - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
equals(Object) - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
equals(Object) - Method in class net.imglib2.roi.geom.integer.IterableLine
 
equals(Object) - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
 
equals(Object) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
equals(Object) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
equals(Object) - Method in interface net.imglib2.roi.geom.real.Box
Determines whether this box describes the same region as another one.
equals(Box, Box) - Static method in interface net.imglib2.roi.geom.real.Box
Determines whether two boxes describe the same region.
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritableLine
 
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritablePointMask
 
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
 
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
equals(Object) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
 
equals(Object) - Method in interface net.imglib2.roi.geom.real.Line
Determines whether this line describes the same region as another one.
equals(Line, Line) - Static method in interface net.imglib2.roi.geom.real.Line
Determines whether two lines describe the same region.
equals(Object) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
equals(Object) - Method in interface net.imglib2.roi.geom.real.PointMask
Determines whether this point describes the same region as another one.
equals(PointMask, PointMask) - Static method in interface net.imglib2.roi.geom.real.PointMask
Determines whether two points describe the same region.
equals(Object) - Method in interface net.imglib2.roi.geom.real.Polygon2D
Determines whether this polygon describes the same region as another one.
equals(Object) - Method in interface net.imglib2.roi.geom.real.Polyline
Determines whether this polyline describes the same region as another one.
equals(Polyshape, Polyshape) - Static method in interface net.imglib2.roi.geom.real.Polyshape
Determines whether two polyshapes describe the same region.
equals(Object) - Method in interface net.imglib2.roi.geom.real.RealPointCollection
Determines whether this point collection describes the same region as another one.
equals(RealPointCollection<?>, RealPointCollection<?>) - Static method in interface net.imglib2.roi.geom.real.RealPointCollection
Determines whether two point collections describe the same region.
equals(Object) - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid
Determines whether this superellipsoid describes the same region as another one.
equals(SuperEllipsoid, SuperEllipsoid) - Static method in interface net.imglib2.roi.geom.real.SuperEllipsoid
Determines whether two superellipsoid describe the same region.
equals(Object) - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
 
equals(Object) - Method in class net.imglib2.roi.labeling.LabelingType
 
equals(Object) - Method in interface net.imglib2.roi.MaskPredicate
Determines whether two masks describe the same region in the same way.
equals(Object) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
 
equals(Object) - Method in class net.imglib2.type.logic.BitType
 
equals(Object) - Method in class net.imglib2.type.logic.BoolType
 
equals(Object) - Method in class net.imglib2.type.logic.NativeBoolType
 
equals(Object) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
equals(Object) - Method in class net.imglib2.type.numeric.ARGBType
 
equals(Object) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
equals(Object) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
equals(Object) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
equals(Object) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
equals(double, double) - Static method in class net.imglib2.type.numeric.real.DoubleType
 
equals(Object) - Method in class net.imglib2.type.numeric.real.FloatType
 
equals(float, float) - Static method in class net.imglib2.type.numeric.real.FloatType
 
equals(Object) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
equals(Object) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
equals(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Tests whether two intervals are equal in their min / max.
equals(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Tests whether two RealIntervals are equal in their min / max.
equals(RealInterval, RealInterval, double) - Static method in class net.imglib2.util.Intervals
Tests whether two RealIntervals are equal in their min / max.
equals(Localizable, Localizable) - Static method in class net.imglib2.util.Localizables
Return true if both Localizable refer to the same position.
equals(RealLocalizable, RealLocalizable) - Static method in class net.imglib2.util.Localizables
Return true if the two RealLocalizables refer to the same position.
equals(RealLocalizable, RealLocalizable, double) - Static method in class net.imglib2.util.Localizables
Return true if the two RealLocalizables refer to the same position up to a given tolerance.
equals(Object) - Method in class net.imglib2.util.ValuePair
 
erode(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
erode(Img<T>, List<? extends Shape>, T, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on an Img using a list of Shapes as a flat structuring element.
erode(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType Img using a Shape as a flat structuring element.
erode(Img<T>, Shape, T, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on an Img using a Shape as a flat structuring element.
erode(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType RandomAccessible as a source and writing results in an IterableInterval.
erode(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, using a RandomAccessible as a source and writing results in an IterableInterval.
erode(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType RandomAccessible as a source and writing results in an IterableInterval.
erode(RandomAccessible<T>, IterableInterval<T>, Shape, T, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, using a RandomAccessible as a source and writing results in an IterableInterval.
erodeFull(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
erodeFull(Img<T>, List<? extends Shape>, T, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on an Img using a list of Shapes as a flat structuring element.
erodeFull(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
erodeFull(Img<T>, Shape, T, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on an Img using a list of Shapes as a flat structuring element.
erodeInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
erodeInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, T, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
erodeInPlace(RandomAccessible<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
erodeInPlace(RandomAccessibleInterval<T>, Interval, Shape, T, int) - Static method in class net.imglib2.algorithm.morphology.Erosion
Performs the erosion morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
Erosion - Class in net.imglib2.algorithm.morphology
 
error - Variable in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
errorMessage - Variable in class net.imglib2.algorithm.BenchmarkAlgorithm
 
errorMessage - Variable in class net.imglib2.algorithm.MultiThreadedAlgorithm
 
estimateBounds(RealInterval) - Method in class net.imglib2.realtransform.AffineTransform2D
Calculate the boundary interval of an interval after it has been transformed.
estimateBounds(RealInterval) - Method in class net.imglib2.realtransform.AffineTransform3D
Calculate the boundary interval of an interval after it has been transformed.
estimateTimeLeft(int) - Method in class net.imglib2.cache.iotiming.IoTimeBudget
Returns how much time is left for the specified priority level.
EuclideanSpace - Interface in net.imglib2
{Rn}: an N-dimensional Euclidean space.
EuclidianDistanceAnisotropic - Class in net.imglib2.algorithm.morphology.distance
Implementation of weighted anisotropic Euclidian distance: D( p ) = min_q f(q) + sum_i w_i*(p_i - q_i)*(p_i - q_i).
EuclidianDistanceAnisotropic(double...) - Constructor for class net.imglib2.algorithm.morphology.distance.EuclidianDistanceAnisotropic
When accounting for anisotropic image data, the ratios of the weights should be equal to the squared ratios of the voxel sizes, e.g.
EuclidianDistanceAnisotropic(int, double) - Constructor for class net.imglib2.algorithm.morphology.distance.EuclidianDistanceAnisotropic
Use the same weight for each dimension
EuclidianDistanceIsotropic - Class in net.imglib2.algorithm.morphology.distance
Implementation of weighted isotropic Euclidian distance: D( p ) = min_q f(q) + w * sum_i (p_i - q_i)*(p_i - q_i).
EuclidianDistanceIsotropic(double) - Constructor for class net.imglib2.algorithm.morphology.distance.EuclidianDistanceIsotropic
 
eval() - Method in interface net.imglib2.algorithm.math.abstractions.OFunction
 
eval(Localizable) - Method in interface net.imglib2.algorithm.math.abstractions.OFunction
 
eval() - Method in class net.imglib2.algorithm.math.execution.Addition
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Addition
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.BlockReadingDirect
 
eval() - Method in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
eval() - Method in class net.imglib2.algorithm.math.execution.Comparison
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Comparison
 
eval() - Method in class net.imglib2.algorithm.math.execution.Division
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Division
 
eval() - Method in class net.imglib2.algorithm.math.execution.Exponential
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Exponential
 
eval() - Method in class net.imglib2.algorithm.math.execution.IfStatement
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.IfStatement
 
eval() - Method in class net.imglib2.algorithm.math.execution.IfStatementBoolean
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.IfStatementBoolean
 
eval() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
eval() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
eval() - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
eval() - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
eval() - Method in class net.imglib2.algorithm.math.execution.Logarithm
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Logarithm
 
eval() - Method in class net.imglib2.algorithm.math.execution.LogicalNot
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.LogicalNot
 
eval() - Method in class net.imglib2.algorithm.math.execution.Maximum
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Maximum
 
eval() - Method in class net.imglib2.algorithm.math.execution.Minimum
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Minimum
 
eval() - Method in class net.imglib2.algorithm.math.execution.Multiplication
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Multiplication
 
eval() - Method in class net.imglib2.algorithm.math.execution.NumericSource
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.NumericSource
 
eval() - Method in class net.imglib2.algorithm.math.execution.Power
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Power
 
eval() - Method in class net.imglib2.algorithm.math.execution.Printing
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Printing
 
eval() - Method in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSourceDirect
 
eval() - Method in class net.imglib2.algorithm.math.execution.Subtraction
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Subtraction
 
eval() - Method in class net.imglib2.algorithm.math.execution.Variable
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.Variable
 
eval() - Method in class net.imglib2.algorithm.math.execution.ZeroMinus
 
eval(Localizable) - Method in class net.imglib2.algorithm.math.execution.ZeroMinus
 
eval(double, long[]) - Method in interface net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion.DiffusionFunction
Return the conduction coefficient in a given direction, from the value of the image gradient in that direction
eval(double, long[]) - Method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion.StrongEdgeEnhancer
 
eval(double, long[]) - Method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion.WideRegionEnhancer
 
evalBoolean() - Method in interface net.imglib2.algorithm.math.abstractions.IBooleanFunction
 
evalBoolean(Localizable) - Method in interface net.imglib2.algorithm.math.abstractions.IBooleanFunction
 
evalBoolean() - Method in class net.imglib2.algorithm.math.execution.Comparison
 
evalBoolean(Localizable) - Method in class net.imglib2.algorithm.math.execution.Comparison
 
evalBoolean() - Method in class net.imglib2.algorithm.math.execution.LogicalAndBoolean
 
evalBoolean(Localizable) - Method in class net.imglib2.algorithm.math.execution.LogicalAndBoolean
 
evalBoolean() - Method in class net.imglib2.algorithm.math.execution.LogicalNot
 
evalBoolean(Localizable) - Method in class net.imglib2.algorithm.math.execution.LogicalNot
 
evalBoolean() - Method in class net.imglib2.algorithm.math.execution.LogicalNotBoolean
 
evalBoolean(Localizable) - Method in class net.imglib2.algorithm.math.execution.LogicalNotBoolean
 
evalBoolean() - Method in class net.imglib2.algorithm.math.execution.LogicalOrBoolean
 
evalBoolean(Localizable) - Method in class net.imglib2.algorithm.math.execution.LogicalOrBoolean
 
evalBoolean() - Method in class net.imglib2.algorithm.math.execution.LogicalXorBoolean
 
evalBoolean(Localizable) - Method in class net.imglib2.algorithm.math.execution.LogicalXorBoolean
 
evalDouble() - Method in interface net.imglib2.algorithm.math.abstractions.OFunction
 
evalDouble(Localizable) - Method in interface net.imglib2.algorithm.math.abstractions.OFunction
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Addition
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Addition
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Comparison
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Comparison
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Division
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Division
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Exponential
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Exponential
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.IfStatement
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.IfStatement
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.IfStatementBoolean
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.IfStatementBoolean
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Logarithm
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Logarithm
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.LogicalNot
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.LogicalNot
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Maximum
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Maximum
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Minimum
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Minimum
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Multiplication
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Multiplication
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.NumericSource
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.NumericSource
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Power
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Power
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Printing
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Printing
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Subtraction
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Subtraction
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.Variable
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.Variable
 
evalDouble() - Method in class net.imglib2.algorithm.math.execution.ZeroMinus
 
evalDouble(Localizable) - Method in class net.imglib2.algorithm.math.execution.ZeroMinus
 
evaluate(double) - Method in class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
evaluate(double) - Method in class net.imglib2.algorithm.bspline.BsplineKernel0
 
evaluate(double) - Method in class net.imglib2.algorithm.bspline.BsplineKernel1
 
evaluate(double) - Method in class net.imglib2.algorithm.bspline.BsplineKernel2
 
evaluate(double) - Method in class net.imglib2.algorithm.bspline.BsplineKernel3
 
evaluate(double) - Method in class net.imglib2.algorithm.bspline.BsplineKernel4
 
evaluate(double) - Method in class net.imglib2.algorithm.bspline.BsplineKernel5
 
evaluate(double, double, double, int) - Method in interface net.imglib2.algorithm.morphology.distance.Distance
Evaluate function with family parameters xShift and yShift at position x in dimension dim.
evaluate(double, double, double, int) - Method in class net.imglib2.algorithm.morphology.distance.EuclidianDistanceAnisotropic
 
evaluate(double, double, double, int) - Method in class net.imglib2.algorithm.morphology.distance.EuclidianDistanceIsotropic
 
evaluate3Normalized(double) - Static method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
evaluateNorm(double) - Method in class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
evaluateNorm(double) - Method in class net.imglib2.algorithm.bspline.BsplineKernel0
 
evaluateNorm(double) - Method in class net.imglib2.algorithm.bspline.BsplineKernel1
 
exact(double) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussCalculator.Parameters
 
exclusiveValueToBin(int, double, double, double) - Static method in class net.imglib2.util.Binning
Convert value to bin number.
execute(Runnable) - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
execute(Runnable) - Method in class net.imglib2.parallel.SequentialExecutorService
 
Exp - Class in net.imglib2.algorithm.math
 
Exp(Object) - Constructor for class net.imglib2.algorithm.math.Exp
 
exp(Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
expand(Interval, long) - Static method in class net.imglib2.util.Intervals
Grow/shrink an interval in all dimensions.
expand(Interval, long...) - Static method in class net.imglib2.util.Intervals
Grow/shrink an interval in all dimensions.
expand(Interval, Dimensions) - Static method in class net.imglib2.util.Intervals
Grow/shrink an interval in all dimensions.
expand(Interval, long, int) - Static method in class net.imglib2.util.Intervals
Grow/shrink an interval in one dimensions.
expand(double) - Method in class net.imglib2.util.RealSum
 
expand(F, OutOfBoundsFactory<T, ? super F>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandBorder(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandMirrorDouble(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandMirrorSingle(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandPeriodic(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandRandom(RandomAccessibleInterval<T>, double, double, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandValue(RandomAccessibleInterval<T>, T, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandValue(RandomAccessibleInterval<T>, T, long...) - Static method in class net.imglib2.view.Views
Deprecated.
use expandValue with unbounded type parameter T
expandValue(RandomAccessibleInterval<T>, float, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandValue(RandomAccessibleInterval<T>, double, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandValue(RandomAccessibleInterval<T>, int, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandValue(RandomAccessibleInterval<T>, long, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandValue(RandomAccessibleInterval<T>, boolean, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
expandZero(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Expand a RandomAccessibleInterval as specified by border.
ExplicitDiffusionScheme<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
ExplicitDiffusionScheme(Img<T>, Img<FloatType>) - Constructor for class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
Contructor of ExplicitDiffusionScheme, calls contructor ExplicitDiffusionScheme(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>) and uses the ImgFactory of the second Img as third parameter.
ExplicitDiffusionScheme(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>) - Constructor for class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
Contructor of ExplicitDiffusionScheme, calls contructor ExplicitDiffusionScheme(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>) and uses a default ArrayImgFactory<FloatType> or CellImgFactory<FloatType> as third parameter (depends on size of input).
ExplicitDiffusionScheme(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>) - Constructor for class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
ExplicitDiffusionScheme2D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
An abstract class for the 2D solvers of the diffusion equation.
ExplicitDiffusionScheme2D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>) - Constructor for class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
 
ExplicitDiffusionScheme2D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>) - Constructor for class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
 
ExplicitDiffusionScheme3D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
ExplicitDiffusionScheme3D(Img<T>, Img<FloatType>) - Constructor for class net.imglib2.algorithm.pde.ExplicitDiffusionScheme3D
ExplicitDiffusionScheme3D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>) - Constructor for class net.imglib2.algorithm.pde.ExplicitDiffusionScheme3D
ExplicitDiffusionScheme3D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>) - Constructor for class net.imglib2.algorithm.pde.ExplicitDiffusionScheme3D
ExplicitInvertibleRealTransform - Class in net.imglib2.realtransform
An InvertibleRealTransform for which the forward and inverse transforms are explicitly given as RealTransforms.
ExplicitInvertibleRealTransform(RealTransform, RealTransform) - Constructor for class net.imglib2.realtransform.ExplicitInvertibleRealTransform
Creates a new ExplicitInvertibleRealTransform.
exponent() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
exponent - Variable in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
exponent() - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
exponent() - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid
Returns the exponent of this superellipsoid
Exponential<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
Doesn't use NumericType math because it lacks the log function.
Exponential(O, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Exponential
 
extend(F, OutOfBoundsFactory<T, ? super F>) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with an out-of-bounds strategy.
extendAndInterpolate(RandomAccessibleInterval<T>[], OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, InterpolatorFactory<T, RandomAccessible<T>>) - Static method in class net.imglib2.realtransform.PositionFieldTransform
 
extendBorder(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with an out-of-bounds strategy to repeat border pixels.
ExtendedRandomAccessibleInterval<T,F extends RandomAccessibleInterval<T>> - Class in net.imglib2.view
ExtendedRandomAccessibleInterval(F, OutOfBoundsFactory<T, ? super F>) - Constructor for class net.imglib2.view.ExtendedRandomAccessibleInterval
 
ExtendedRealRandomAccessibleRealInterval<T,F extends RealRandomAccessibleRealInterval<T>> - Class in net.imglib2.view
ExtendedRealRandomAccessibleRealInterval(F, RealOutOfBoundsFactory<T, ? super F>) - Constructor for class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
extendedSource - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
extendMirrorDouble(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
extendMirrorSingle(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a mirroring out-of-bounds strategy.
extendPeriodic(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a periodic out-of-bounds strategy.
extendRandom(F, double, double) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a random-value out-of-bounds strategy.
extendValue(F, T) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendValue(F, T) - Static method in class net.imglib2.view.Views
Deprecated.
use extendValue with unbounded type parameter T
extendValue(F, float) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendValue(F, double) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendValue(F, int) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendValue(F, long) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendValue(F, boolean) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy.
extendZero(F) - Static method in class net.imglib2.view.Views
Extend a RandomAccessibleInterval with a constant-value out-of-bounds strategy where the constant value is the zero-element of the data type.
extract(V) - Method in interface net.imglib2.cache.CacheRemover
Extract data out of value.
extract(Cell<A>) - Method in class net.imglib2.cache.img.DiskCellCache
 
extract(V) - Method in class net.imglib2.cache.IoSync
 
extremaType - Variable in class net.imglib2.algorithm.dog.DogDetection
 

F

f - Variable in class net.imglib2.algorithm.math.execution.FunctionCursor
 
f(double, long) - Static method in class net.imglib2.position.transform.FloorOffset
 
f(float, long) - Static method in class net.imglib2.position.transform.FloorOffset
 
f(double[], long[]) - Method in class net.imglib2.position.transform.FloorOffset
 
f(float[], long[]) - Method in class net.imglib2.position.transform.FloorOffset
 
f(RealLocalizable, long[]) - Method in class net.imglib2.position.transform.FloorOffset
 
FACTOR - Static variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
factory(T) - Static method in class net.imglib2.algorithm.gauss3.ConvolverNativeType
Deprecated.
 
factory(T) - Static method in class net.imglib2.algorithm.gauss3.ConvolverNativeTypeBuffered
Deprecated.
 
factory(T) - Static method in class net.imglib2.algorithm.gauss3.ConvolverNumericType
Deprecated.
 
factory() - Static method in class net.imglib2.algorithm.gauss3.DoubleConvolverRealType
Deprecated.
 
factory() - Static method in class net.imglib2.algorithm.gauss3.DoubleConvolverRealTypeBuffered
Deprecated.
 
factory() - Static method in class net.imglib2.algorithm.gauss3.FloatConvolverRealType
Deprecated.
 
factory() - Static method in class net.imglib2.algorithm.gauss3.FloatConvolverRealTypeBuffered
Deprecated.
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
factory - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodUnsafe
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
factory - Variable in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodUnsafe
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodUnsafe
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodUnsafe
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodUnsafe
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodUnsafe
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenterUnsafe
 
factory() - Static method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodUnsafe
 
factory() - Method in class net.imglib2.cache.img.CachedCellImg
 
factory() - Method in class net.imglib2.cache.img.DiskCachedCellImg
 
factory() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
factory() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
factory() - Method in class net.imglib2.histogram.Histogram1d
 
factory() - Method in class net.imglib2.histogram.HistogramNd
 
factory() - Method in class net.imglib2.img.array.ArrayImg
 
factory() - Method in class net.imglib2.img.cell.CellImg
 
factory() - Method in class net.imglib2.img.cell.LazyCellImg
 
factory() - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
factory() - Method in class net.imglib2.img.imageplus.ImagePlusImg
 
factory() - Method in interface net.imglib2.img.Img
Get a ImgFactory that creates Imgs of the same kind as this one.
factory() - Method in class net.imglib2.img.ImgView
 
factory() - Method in class net.imglib2.img.list.AbstractListImg
 
factory() - Method in class net.imglib2.img.planar.PlanarImg
 
factory() - Method in class net.imglib2.img.sparse.NtreeImg
 
factory() - Method in class net.imglib2.img.unsafe.UnsafeImg
 
factory() - Method in interface net.imglib2.labeling.Labeling
Deprecated.
Factory
factory() - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
factory() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
Factory() - Constructor for class net.imglib2.view.composite.GenericComposite.Factory
 
Factory(int) - Constructor for class net.imglib2.view.composite.NumericComposite.Factory
 
Factory(int) - Constructor for class net.imglib2.view.composite.RealComposite.Factory
 
factory - Variable in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
factory - Variable in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
fast(double) - Static method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussCalculator.Parameters
 
FastCursorLoops - Class in net.imglib2.loops
A package-private utility class that's used by LoopBuilder.
FastCursorLoops.FiveCursorLoop<A,B,C,D,E> - Class in net.imglib2.loops
 
FastCursorLoops.FourCursorLoop<A,B,C,D> - Class in net.imglib2.loops
 
FastCursorLoops.OneCursorLoop<A> - Class in net.imglib2.loops
 
FastCursorLoops.SixCursorLoop<A,B,C,D,E,F> - Class in net.imglib2.loops
 
FastCursorLoops.ThreeCursorLoop<A,B,C> - Class in net.imglib2.loops
 
FastCursorLoops.TwoCursorLoop<A,B> - Class in net.imglib2.loops
 
FastGauss - Class in net.imglib2.algorithm.convolution.fast_gauss
Faster alternative to Gauss3.
FastGauss() - Constructor for class net.imglib2.algorithm.convolution.fast_gauss.FastGauss
 
FastGaussCalculator - Class in net.imglib2.algorithm.convolution.fast_gauss
This class implements the fast Gauss transform to calculate a gaussian blur.
FastGaussCalculator(FastGaussCalculator.Parameters) - Constructor for class net.imglib2.algorithm.convolution.fast_gauss.FastGaussCalculator
 
FastGaussCalculator.Parameters - Class in net.imglib2.algorithm.convolution.fast_gauss
Collects all coefficients required to carry on the filtering, see eq.
FastGaussConvolverRealType - Class in net.imglib2.algorithm.convolution.fast_gauss
Implementation of LineConvolverFactory that uses FastGaussCalculator to calculate a fast Gauss transform.
FastGaussConvolverRealType(double) - Constructor for class net.imglib2.algorithm.convolution.fast_gauss.FastGaussConvolverRealType
 
FastGaussConvolverRealType.MyConvolver - Class in net.imglib2.algorithm.convolution.fast_gauss
 
FetcherThreads - Class in net.imglib2.cache.queue
TODO revise javadoc A set of threads that load data.
FetcherThreads(BlockingFetchQueues<Callable<?>>, int) - Constructor for class net.imglib2.cache.queue.FetcherThreads
Create (and start) a set of fetcher threads.
FetcherThreads(BlockingFetchQueues<Callable<?>>, int, IntFunction<String>) - Constructor for class net.imglib2.cache.queue.FetcherThreads
Create (and start) a set of fetcher threads.
FFT - Class in net.imglib2.algorithm.fft2
Compute a FFT transform, either real-to-complex, complex-to-complex, or complex-to-real for an entire dataset.
FFT() - Constructor for class net.imglib2.algorithm.fft2.FFT
 
FFTConvolution<R extends RealType<R>> - Class in net.imglib2.algorithm.fft2
Computes the convolution of an image with an arbitrary kernel.
FFTConvolution(Img<R>, Img<R>) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution in-place (img will be replaced by the convolved result).
FFTConvolution(Img<R>, Img<R>, ExecutorService) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution in-place (img will be replaced by the convolved result).
FFTConvolution(Img<R>, Img<R>, RandomAccessibleInterval<R>) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution The image will be extended by mirroring with single boundary, the kernel will be zero-padded.
FFTConvolution(Img<R>, Img<R>, RandomAccessibleInterval<R>, ExecutorService) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution The image will be extended by mirroring with single boundary, the kernel will be zero-padded.
FFTConvolution(RandomAccessibleInterval<R>, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution in-place (img will be replaced by the convolved result).
FFTConvolution(RandomAccessibleInterval<R>, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>, ExecutorService) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution in-place (img will be replaced by the convolved result).
FFTConvolution(RandomAccessibleInterval<R>, RandomAccessibleInterval<R>, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution The image will be extended by mirroring with single boundary, the kernel will be zero-padded.
FFTConvolution(RandomAccessibleInterval<R>, RandomAccessibleInterval<R>, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>, ExecutorService) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution The image will be extended by mirroring with single boundary, the kernel will be zero-padded.
FFTConvolution(RandomAccessible<R>, Interval, RandomAccessible<R>, Interval, ImgFactory<ComplexFloatType>) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution in-place (img will be replaced by the convolved result).
FFTConvolution(RandomAccessible<R>, Interval, RandomAccessible<R>, Interval, ImgFactory<ComplexFloatType>, ExecutorService) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution in-place (img will be replaced by the convolved result).
FFTConvolution(RandomAccessible<R>, Interval, RandomAccessible<R>, Interval, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution.
FFTConvolution(RandomAccessible<R>, Interval, RandomAccessible<R>, Interval, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>, ExecutorService) - Constructor for class net.imglib2.algorithm.fft2.FFTConvolution
Compute a Fourier space based convolution.
FFTFunctions - Class in net.imglib2.algorithm.fft
Deprecated.
use FFTMethods instead
FFTFunctions() - Constructor for class net.imglib2.algorithm.fft.FFTFunctions
Deprecated.
 
fftImgFactory() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
fftImgFactory() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
FFTMethods - Class in net.imglib2.algorithm.fft2
Compute a FFT transform, either real-to-complex or complex-to-complex, or complex-to-real for individual dimensions.
FFTMethods() - Constructor for class net.imglib2.algorithm.fft2.FFTMethods
 
fill(RandomAccessible<T>, RandomAccessible<U>, Localizable, U, Shape) - Static method in class net.imglib2.algorithm.fill.FloodFill
Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet.
fill(RandomAccessible<T>, RandomAccessible<U>, Localizable, U, Shape, BiPredicate<T, U>) - Static method in class net.imglib2.algorithm.fill.FloodFill
Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet.
fill(RandomAccessible<T>, RandomAccessible<U>, Localizable, Shape, BiPredicate<T, U>, Consumer<U>) - Static method in class net.imglib2.algorithm.fill.FloodFill
Iterative n-dimensional flood fill for arbitrary neighborhoods: Starting at seed location, write fillLabel into target at current location and continue for each pixel in neighborhood defined by shape if neighborhood pixel is in the same connected component and fillLabel has not been written into that location yet.
fill(RandomAccessible<T>, RandomAccessible<U>, Localizable, U, Shape, Filter<Pair<T, U>, Pair<T, U>>) - Static method in class net.imglib2.algorithm.fill.FloodFill
Deprecated.
fill(RandomAccessible<T>, RandomAccessible<U>, Localizable, T, U, Shape, Filter<Pair<T, U>, Pair<T, U>>) - Static method in class net.imglib2.algorithm.fill.FloodFill
Deprecated.
fill(RandomAccessible<T>, RandomAccessible<U>, Localizable, T, U, Shape, Filter<Pair<T, U>, Pair<T, U>>, Writer<U>) - Static method in class net.imglib2.algorithm.fill.FloodFill
Deprecated.
Fill - Class in net.imglib2.algorithm.morphology.table2d
Sets a pixel to 1 if all of its neighbors are 1.
Fill() - Constructor for class net.imglib2.algorithm.morphology.table2d.Fill
 
fill(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Fill
 
fill(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Fill
 
fillWeights(RealLocalizable) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction
 
fillWeights() - Method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Fill the weights array.
fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
fillWeights() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
Filter<T,U> - Interface in net.imglib2.algorithm.fill
Deprecated.
FinalDimensions - Class in net.imglib2
An implementation of dimensionality that can wrap a long[] array.
FinalDimensions(long[], boolean) - Constructor for class net.imglib2.FinalDimensions
Protected constructor that can re-use the passed position array.
FinalDimensions(long...) - Constructor for class net.imglib2.FinalDimensions
Create a FinalDimensions with a defined size
FinalDimensions(int...) - Constructor for class net.imglib2.FinalDimensions
Create a FinalDimensions with a defined size
FinalDimensions(Dimensions) - Constructor for class net.imglib2.FinalDimensions
Create a FinalDimensions with a defined size
FinalInterval - Class in net.imglib2
Implementation of the Interval interface.
FinalInterval(Interval) - Constructor for class net.imglib2.FinalInterval
Creates an Interval from another Interval
FinalInterval(Dimensions) - Constructor for class net.imglib2.FinalInterval
Creates an Interval with the boundaries [0, dimensions-1]
FinalInterval(long[], long[], boolean) - Constructor for class net.imglib2.FinalInterval
Creates an Interval with the boundaries [min, max] (both including)
FinalInterval(long[], long[]) - Constructor for class net.imglib2.FinalInterval
Creates an Interval with the boundaries [min, max] (both including)
FinalInterval(Localizable, Localizable) - Constructor for class net.imglib2.FinalInterval
Creates an Interval with the boundaries [min, max] (both including)
FinalInterval(long...) - Constructor for class net.imglib2.FinalInterval
Creates an Interval with the boundaries [0, dimensions-1]
finalize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
finalize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
finalize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
finalize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
finalize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
finalize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
finalize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
finalize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil.OwningUnsafe
 
FinalRealInterval - Class in net.imglib2
Implementation of the RealInterval interface.
FinalRealInterval(RealInterval) - Constructor for class net.imglib2.FinalRealInterval
Creates a new AbstractRealInterval using an existing RealInterval
FinalRealInterval(double[], double[], boolean) - Constructor for class net.imglib2.FinalRealInterval
Creates a new AbstractRealInterval from min and max coordinates
FinalRealInterval(double[], double[]) - Constructor for class net.imglib2.FinalRealInterval
Creates a new AbstractRealInterval from min and max coordinates
FinalRealInterval(RealLocalizable, RealLocalizable) - Constructor for class net.imglib2.FinalRealInterval
Creates a new AbstractRealInterval from min and max coordinates
find(RealLocalizable) - Method in class net.imglib2.algorithm.kdtree.VolumetricSearch
Find all intervals that contain a given point
findAllIterableImgSource(OFunction<O>) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
findFirstImg(IFunction) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
findFirstInterval(IFunction) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
findFirstIterableImgSource(OFunction<O>) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
findImg(IFunction) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
findLocalExtrema(RandomAccessibleInterval<T>, LocalExtrema.LocalNeighborhoodCheck<P, T>, ExecutorService) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Deprecated.
findLocalExtrema(RandomAccessibleInterval<T>, LocalExtrema.LocalNeighborhoodCheck<P, T>, Shape, ExecutorService, int) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Find pixels that are extrema in their local neighborhood.
findLocalExtrema(RandomAccessibleInterval<T>, LocalExtrema.LocalNeighborhoodCheck<P, T>, Shape, ExecutorService, int, int) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Find pixels that are extrema in their local neighborhood.
findLocalExtrema(RandomAccessible<T>, Interval, LocalExtrema.LocalNeighborhoodCheck<P, T>, Shape, ExecutorService, int) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Find pixels that are extrema in their local neighborhood.
findLocalExtrema(RandomAccessible<T>, Interval, LocalExtrema.LocalNeighborhoodCheck<P, T>, Shape, ExecutorService, int, int) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Find pixels that are extrema in their local neighborhood.
findLocalExtrema(RandomAccessibleInterval<T>, LocalExtrema.LocalNeighborhoodCheck<P, T>) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Find pixels that are extrema in their local neighborhood.
findLocalExtrema(RandomAccessibleInterval<T>, LocalExtrema.LocalNeighborhoodCheck<P, T>, Shape) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Find pixels that are extrema in their local neighborhood.
findLocalExtrema(RandomAccessible<T>, Interval, LocalExtrema.LocalNeighborhoodCheck<P, T>) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Find pixels that are extrema in their local neighborhood.
findLocalExtrema(RandomAccessible<T>, Interval, LocalExtrema.LocalNeighborhoodCheck<P, T>, Shape) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Find pixels that are extrema in their local neighborhood.
findMax(IterableInterval<T>) - Static method in class net.imglib2.algorithm.stats.Max
Find the maximum value and its position in an IterableInterval.
findMin(IterableInterval<T>) - Static method in class net.imglib2.algorithm.stats.Min
Find the minimum value and its position in an IterableInterval.
findRoot(int) - Method in class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
Find the root node (set identifier) for a specified id.
findRoot(long) - Method in class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
 
findRoot(int) - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
Find the root node (set identifier) for a specified id.
findRoot(long) - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
findRoot(long) - Method in class net.imglib2.algorithm.util.unionfind.LongHashMapUnionFind
 
findRoot(long) - Method in interface net.imglib2.algorithm.util.unionfind.UnionFind
 
findStripeIndex(double) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Find the index of the stripe whose yMin is lower or the same as the given y
finish() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
firstDataValue() - Method in class net.imglib2.histogram.Histogram1d
Returns the first data value of the input iteration.
firstElement() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodUnsafe
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsIterableInterval
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodUnsafe
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsIterableInterval
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodUnsafe
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsIterableInterval
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodUnsafe
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsIterableInterval
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodUnsafe
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsIterableInterval
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodUnsafe
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsIterableInterval
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenterUnsafe
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodUnsafe
 
firstElement() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsIterableInterval
 
firstElement() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
firstElement() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
Return the element at the top-left corner of this nD neighborhood.
firstElement() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
firstElement() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
firstElement() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
firstElement() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
firstElement() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
firstElement() - Method in class net.imglib2.converter.AbstractConvertedIterableRealInterval
 
firstElement() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
firstElement() - Method in class net.imglib2.histogram.Histogram1d
 
firstElement() - Method in class net.imglib2.histogram.HistogramNd
 
firstElement() - Method in class net.imglib2.img.AbstractImg
 
firstElement() - Method in interface net.imglib2.IterableRealInterval
Get the first element of this IterableRealInterval.
firstElement() - Method in class net.imglib2.KDTree
 
firstElement() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
firstElement() - Method in class net.imglib2.PointSampleList
 
firstElement() - Method in class net.imglib2.RealPointSampleList
 
firstElement() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
firstElement() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
firstElement() - Method in class net.imglib2.roi.boundary.Boundary
 
firstElement() - Method in class net.imglib2.roi.geom.integer.IterableLine
 
firstElement() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
firstElement() - Method in class net.imglib2.roi.labeling.LabelRegion
 
firstElement() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
firstElement() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
firstElement() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
firstElement() - Method in class net.imglib2.roi.util.SamplingIterableInterval
 
firstElement() - Method in class net.imglib2.view.IntervalView
 
firstElement() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
fit(double[][], double[], double[], FitFunction) - Method in class net.imglib2.algorithm.localization.DummySolver
 
fit(double[][], double[], double[], FitFunction) - Method in interface net.imglib2.algorithm.localization.FunctionFitter
Minimizes E = sum {(y[k] - f(x[k],a)) }^2.
fit(double[][], double[], double[], FitFunction) - Method in class net.imglib2.algorithm.localization.LevenbergMarquardtSolver
 
FitFunction - Interface in net.imglib2.algorithm.localization
Interface for fitting-target functions.
FiveCursorLoop(LoopBuilder.FiveConsumer<A, B, C, D, E>, Cursor<A>, Cursor<B>, Cursor<C>, Cursor<D>, Cursor<E>) - Constructor for class net.imglib2.loops.FastCursorLoops.FiveCursorLoop
 
fixAxes(ImgPlus<T>) - Static method in class net.imglib2.img.display.imagej.ImgPlusViews
Change the axis types of an image, such that each axis is uniquely typed as X, Y, Z, channel or time.
fixedThreadPool(int) - Static method in class net.imglib2.parallel.TaskExecutors
Returns a TaskExecutor that uses a fixed thread pool with the given number of threads.
flags - Variable in class net.imglib2.util.RealSum
 
FlatCollections - Class in net.imglib2.util
Utility class for wrapping ImgLib2 images as read-only Collections.
FlatCollections() - Constructor for class net.imglib2.util.FlatCollections
 
flatIterable(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
FlatIterationOrder - Class in net.imglib2
A flat iteration order on an IterableInterval.
FlatIterationOrder(Interval) - Constructor for class net.imglib2.FlatIterationOrder
 
flatIterationOrder() - Method in class net.imglib2.loops.LoopBuilder
LoopBuilder might use any iteration order to execute the loop.
flatIterationOrder(boolean) - Method in class net.imglib2.loops.LoopBuilder
If false, LoopBuilder might use any iteration order to execute the loop.
FLOAT(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
FLOAT(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
FloatAccess - Interface in net.imglib2.img.basictypeaccess
TODO
FloatAccessProxy<T extends RealType<T>> - Class in net.imglib2.img.io.proxyaccess
Proxy access over any RealType container.
FloatAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.FloatAccessProxy
 
FloatArray - Class in net.imglib2.img.basictypeaccess.array
TODO
FloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.FloatArray
 
FloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.FloatArray
 
floatArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
FloatArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.FloatArrayType
 
FloatAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<FloatType, FloatArray>.
FloatAWTScreenImage(ArrayImg<FloatType, FloatArray>) - Constructor for class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
 
FloatAWTScreenImage(FloatType, FloatArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
 
floatCollection(IterableInterval<? extends RealType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a RealType iterable image as a collection.
FloatConverter - Class in net.imglib2.converter.longaccess
 
FloatConverter() - Constructor for class net.imglib2.converter.longaccess.FloatConverter
 
FloatConvolverRealType - Class in net.imglib2.algorithm.convolution.kernel
A 1-dimensional line convolver that operates on all RealType.
FloatConvolverRealType(Kernel1D, RandomAccess<? extends RealType<?>>, RandomAccess<? extends RealType<?>>, int, long) - Constructor for class net.imglib2.algorithm.convolution.kernel.FloatConvolverRealType
 
FloatConvolverRealType<S extends RealType<S>,T extends RealType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
FloatConvolverRealTypeBuffered<S extends RealType<S>,T extends RealType<T>> - Class in net.imglib2.algorithm.gauss3
Deprecated.
FloatImagePlus<T extends NativeType<T>> - Class in net.imglib2.img.imageplus
ImagePlusImg for float-stored data.
FloatImagePlus(long[], Fraction) - Constructor for class net.imglib2.img.imageplus.FloatImagePlus
 
FloatImagePlus(ImagePlus) - Constructor for class net.imglib2.img.imageplus.FloatImagePlus
 
floatList(RandomAccessibleInterval<? extends RealType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps a RealType random-accessible image as a list.
FloatLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
FloatLongAccessType - Class in net.imglib2.type.numeric.real
 
FloatLongAccessType(NativeLongAccessImg<?, ? extends FloatLongAccess>) - Constructor for class net.imglib2.type.numeric.real.FloatLongAccessType
 
FloatLongAccessType(double) - Constructor for class net.imglib2.type.numeric.real.FloatLongAccessType
 
FloatLongAccessType(FloatLongAccess) - Constructor for class net.imglib2.type.numeric.real.FloatLongAccessType
 
FloatLongAccessType() - Constructor for class net.imglib2.type.numeric.real.FloatLongAccessType
 
FloatLongAccessTypeFloatTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
FloatLongAccessTypeFloatTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.FloatLongAccessTypeFloatTypeConverter
 
FloatLongAccessTypeFloatTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
FloatNtree - Class in net.imglib2.img.sparse
FloatAccess based on a Ntree.
FloatNtree(long[], long[], float) - Constructor for class net.imglib2.img.sparse.FloatNtree
 
floats(long...) - Static method in class net.imglib2.img.array.ArrayImgs
floats(float[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<FloatType, FloatArray> reusing a passed float[] array.
floats(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<FloatType, FloatAccess> using a FloatAccess passed as argument.
floats(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
floats(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
floats(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
floats(FloatUnsafe, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<FloatType, FloatArray> reusing a passed float[] array.
FloatType - Class in net.imglib2.type.numeric.real
TODO
FloatType(NativeImg<?, ? extends FloatAccess>) - Constructor for class net.imglib2.type.numeric.real.FloatType
 
FloatType(float) - Constructor for class net.imglib2.type.numeric.real.FloatType
 
FloatType(FloatAccess) - Constructor for class net.imglib2.type.numeric.real.FloatType
 
FloatType() - Constructor for class net.imglib2.type.numeric.real.FloatType
 
FloatUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
FloatUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
FloatUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
FloatUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
FloatUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
FloodFill - Class in net.imglib2.algorithm.fill
Iterative n-dimensional flood fill for arbitrary neighborhoods.
FloodFill() - Constructor for class net.imglib2.algorithm.fill.FloodFill
 
Floor<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to its floor discrete coordinates.
Floor(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Floor
 
Floor(RealLocalizable, LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Floor
 
floor(double) - Static method in class net.imglib2.position.transform.Floor
 
floor(float) - Static method in class net.imglib2.position.transform.Floor
 
floor(double[], long[]) - Static method in class net.imglib2.position.transform.Floor
 
floor(float[], long[]) - Static method in class net.imglib2.position.transform.Floor
 
floor(RealLocalizable, long[]) - Static method in class net.imglib2.position.transform.Floor
 
FloorInterpolator<T> - Class in net.imglib2.interpolation.randomaccess
RealRandomAccess to a RandomAccess by nearest floor interpolation (i.e., the value is sampled at floor(x)).
FloorInterpolator(FloorInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
FloorInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
FloorInterpolatorFactory<T> - Class in net.imglib2.interpolation.randomaccess
 
FloorInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
 
FloorOffset<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to its floor discrete coordinates plus a discrete offset vector.
FloorOffset(LocalizablePositionable, long[]) - Constructor for class net.imglib2.position.transform.FloorOffset
 
FloorOffset(LocalizablePositionable, Localizable) - Constructor for class net.imglib2.position.transform.FloorOffset
 
FloorOffset(RealLocalizable, LocalizablePositionable, long[]) - Constructor for class net.imglib2.position.transform.FloorOffset
 
FloorOffset(RealLocalizable, LocalizablePositionable, Localizable) - Constructor for class net.imglib2.position.transform.FloorOffset
 
FloydSteinbergDithering<T extends RealType<T>> - Class in net.imglib2.algorithm.floydsteinberg
TODO
FloydSteinbergDithering(RandomAccessibleInterval<T>, float) - Constructor for class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
FloydSteinbergDithering(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
Will estimate the dithering threshold by (max - min) / 2
forEach(Forest<T>, TreeUtils.Consumer<T>) - Static method in class net.imglib2.algorithm.tree.TreeUtils
Call TreeUtils.Consumer.accept(Object) on op for every node in the forest.
forEach(BiConsumer<String, Object>) - Method in class net.imglib2.cache.img.DiskCachedCellImgOptions.Values
 
forEach(BiConsumer<String, Object>) - Method in interface net.imglib2.cache.img.optional.AccessOptions.Val
 
forEach(BiConsumer<String, Object>) - Method in interface net.imglib2.cache.img.optional.CacheOptions.Val
 
forEach(BiConsumer<String, Object>) - Method in interface net.imglib2.cache.img.optional.CellDimensionsOptions.Val
 
forEach(BiConsumer<String, Object>) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
forEach(BiConsumer<String, Object>) - Method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions.Values
 
forEach(List<? extends T>, Consumer<? super T>) - Method in class net.imglib2.parallel.DefaultTaskExecutor
 
forEach(List<? extends T>, Consumer<? super T>) - Method in interface net.imglib2.parallel.TaskExecutor
Like TaskExecutor.runAll(List) but - instead of a list of tasks - it takes a list of parameters and a function that is called for each of the parameters.
forEachApply(List<? extends T>, Function<? super T, ? extends R>) - Method in class net.imglib2.parallel.DefaultTaskExecutor
 
forEachApply(List<? extends T>, Function<? super T, ? extends R>) - Method in interface net.imglib2.parallel.TaskExecutor
Like TaskExecutor.forEach(List, Consumer) but collects the results.
forEachChunk(Function<LoopBuilder.Chunk<T>, R>) - Method in class net.imglib2.loops.LoopBuilder
This method is similar to LoopBuilder.forEachPixel(T) but more flexible when multi threading is used.
forEachOffset(long[], long[], int[], P, Runnable) - Static method in class net.imglib2.algorithm.util.Grids
Execute runAtOffset for each offset of a grid defined by min, max, and blockSize.
forEachOffset(long[], long[], int[], Consumer<long[]>) - Static method in class net.imglib2.algorithm.util.Grids
Execute runAtOffset for each offset of a grid defined by min, max, and blockSize.
forEachOffset(long[], long[], int[], Grids.SetForDimension, Grids.GetForDimension, Grids.MoveForDimension, Runnable) - Static method in class net.imglib2.algorithm.util.Grids
Execute a Runnable for each offset of a grid defined by min, max, and blockSize.
forEachPixel(T) - Method in interface net.imglib2.loops.LoopBuilder.Chunk
 
forEachPixel(T) - Method in class net.imglib2.loops.LoopBuilder
 
Forest<T extends TreeNode<T>> - Interface in net.imglib2.algorithm.tree
A forest (in contrast to a Tree has several roots.
forExecutorService(ExecutorService) - Static method in class net.imglib2.parallel.TaskExecutors
Creates a TaskExecutor that wraps around given ExecutorService.
forExecutorServiceAndNumTasks(ExecutorService, int) - Static method in class net.imglib2.parallel.TaskExecutors
Creates a TaskExecutor that wraps around given ExecutorService, and will suggest the given number of tasks when asked.
forExecutorServiceAndNumThreads(ExecutorService, int) - Static method in class net.imglib2.parallel.TaskExecutors
Creates a TaskExecutor that wraps around given ExecutorService, and will return the given parallelism.
ForkJoinExecutorService - Class in net.imglib2.parallel
The ForkJoinExecutorService is an ExecutorService, for efficient nested parallelization.
ForkJoinExecutorService() - Constructor for class net.imglib2.parallel.ForkJoinExecutorService
 
forwardTransform - Variable in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
FourCursorLoop(LoopBuilder.FourConsumer<A, B, C, D>, Cursor<A>, Cursor<B>, Cursor<C>, Cursor<D>) - Constructor for class net.imglib2.loops.FastCursorLoops.FourCursorLoop
 
FourierConvolution<T extends RealType<T>,S extends RealType<S>> - Class in net.imglib2.algorithm.fft
Deprecated.
use FFTConvolution instead
FourierConvolution(RandomAccessibleInterval<T>, RandomAccessibleInterval<S>, ImgFactory<T>, ImgFactory<S>, ImgFactory<ComplexFloatType>) - Constructor for class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
Computes a convolution in Fourier space.
FourierConvolution(Img<T>, Img<S>, ImgFactory<ComplexFloatType>) - Constructor for class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
Computes a convolution in Fourier space.
FourierConvolution(Img<T>, Img<S>) - Constructor for class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
Computes a convolution in Fourier space.
FourierTransform<T extends RealType<T>,S extends ComplexType<S>> - Class in net.imglib2.algorithm.fft
Deprecated.
use FFT instead
FourierTransform(RandomAccessibleInterval<T>, ImgFactory<S>, S, FourierTransform.PreProcessing, FourierTransform.Rearrangement, FourierTransform.FFTOptimization, float, float, int) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(RandomAccessibleInterval<T>, ImgFactory<S>, S) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(RandomAccessibleInterval<T>, ImgFactory<S>, S, FourierTransform.Rearrangement) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(RandomAccessibleInterval<T>, ImgFactory<S>, S, FourierTransform.FFTOptimization) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(RandomAccessibleInterval<T>, ImgFactory<S>, S, FourierTransform.PreProcessing) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(Img<T>, S) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(Img<T>, S, FourierTransform.Rearrangement) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(Img<T>, S, FourierTransform.PreProcessing) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(Img<T>, S, FourierTransform.FFTOptimization) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(Img<T>, S, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform(RandomAccessibleInterval<T>, ImgFactory<S>, S, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
FourierTransform.FFTOptimization - Enum in net.imglib2.algorithm.fft
Deprecated.
 
FourierTransform.PreProcessing - Enum in net.imglib2.algorithm.fft
Deprecated.
 
FourierTransform.Rearrangement - Enum in net.imglib2.algorithm.fft
Deprecated.
 
FOURTHIRDS - Static variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
Fraction - Class in net.imglib2.util
Implements the concept of fractions
Fraction(long, long) - Constructor for class net.imglib2.util.Fraction
Creates a new fraction with the respective values
Fraction() - Constructor for class net.imglib2.util.Fraction
Instantiate a Fraction with a value of 1
frames - Variable in class net.imglib2.img.imageplus.ImagePlusImg
 
frequency(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns the frequency count associated with a given bin.
frequency(T) - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of values within a bin using a representative value.
frequency(long) - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of the values within a bin.
frequency(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values within a bin using a set of representative values.
frequency(long[]) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of the values within a bin.
from(ImagePlus) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
fromBooleansDirtyVolatile(boolean, boolean) - Static method in enum net.imglib2.img.basictypeaccess.AccessFlags
 
fromChar(char) - Static method in enum net.imglib2.type.label.BasePairBitType.Base
 
fromImageAndLabels(RandomAccessibleInterval<I>, List<T>) - Static method in class net.imglib2.roi.labeling.ImgLabeling
Creates a non empty ImgLabeling, from an index image and a list of labels.
fromImageAndLabelSets(RandomAccessibleInterval<I>, List<Set<T>>) - Static method in class net.imglib2.roi.labeling.ImgLabeling
Creates a non empty ImgLabeling, from an index image and a list of label sets.
fullKernel() - Method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
 
FullSourceMapMixedRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a Mixed transformToSource.
FullSourceMapMixedRandomAccess(FullSourceMapMixedRandomAccess<T>) - Constructor for class net.imglib2.view.FullSourceMapMixedRandomAccess
 
FullSourceMapSlicingRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a Slicing transformToSource.
FullSourceMapSlicingRandomAccess(FullSourceMapSlicingRandomAccess<T>) - Constructor for class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
fullViewIterableInterval - Variable in class net.imglib2.view.IntervalView
TODO Javadoc
fullViewRandomAccessible - Variable in class net.imglib2.view.IntervalView
TODO Javadoc
fullViewRandomAccessible - Variable in class net.imglib2.view.MixedTransformView
 
fullViewRandomAccessible - Variable in class net.imglib2.view.TransformView
 
Function<S extends Type<S>,T extends Type<T>,U extends Type<U>> - Interface in net.imglib2.algorithm.function
TODO
FunctionCursor<C extends RealType<C>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
FunctionCursor(IFunction, Converter<RealType<?>, C>, C, O, Converter<C, O>) - Constructor for class net.imglib2.algorithm.math.execution.FunctionCursor
 
FunctionCursorDouble<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
FunctionCursorDouble(IFunction, O, Converter<RealType<?>, O>) - Constructor for class net.imglib2.algorithm.math.execution.FunctionCursorDouble
 
FunctionCursorDoubleIncompatibleOrder<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
FunctionCursorDoubleIncompatibleOrder(IFunction, O, Converter<RealType<?>, O>) - Constructor for class net.imglib2.algorithm.math.execution.FunctionCursorDoubleIncompatibleOrder
 
FunctionCursorIncompatibleOrder<C extends RealType<C>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
FunctionCursorIncompatibleOrder(IFunction, Converter<RealType<?>, C>, C, O, Converter<C, O>) - Constructor for class net.imglib2.algorithm.math.execution.FunctionCursorIncompatibleOrder
 
FunctionFitter - Interface in net.imglib2.algorithm.localization
 
FunctionRandomAccess<C extends RealType<C>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
FunctionRandomAccess(IFunction, Converter<RealType<?>, C>, C, O, Converter<C, O>) - Constructor for class net.imglib2.algorithm.math.execution.FunctionRandomAccess
 
FunctionRandomAccess() - Constructor for class net.imglib2.position.FunctionRandomAccessible.FunctionRandomAccess
 
FunctionRandomAccessDouble<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
FunctionRandomAccessDouble(IFunction, O, Converter<RealType<?>, O>) - Constructor for class net.imglib2.algorithm.math.execution.FunctionRandomAccessDouble
 
FunctionRandomAccessible<T> - Class in net.imglib2.position
A RandomAccessible that generates a function value for each position in discrete coordinate space by side-effect using a BiConsumer.
FunctionRandomAccessible(int, BiConsumer<Localizable, ? super T>, Supplier<T>) - Constructor for class net.imglib2.position.FunctionRandomAccessible
 
FunctionRandomAccessible(int, Supplier<BiConsumer<Localizable, ? super T>>, Supplier<T>) - Constructor for class net.imglib2.position.FunctionRandomAccessible
 
FunctionRandomAccessible.FunctionRandomAccess - Class in net.imglib2.position
 
FunctionRealRandomAccessible<T> - Class in net.imglib2.position
A RealRandomAccessible that generates a function value for each position in real coordinate space by side-effect using a BiConsumer.
FunctionRealRandomAccessible(int, BiConsumer<RealLocalizable, ? super T>, Supplier<T>) - Constructor for class net.imglib2.position.FunctionRealRandomAccessible
 
FunctionRealRandomAccessible(int, Supplier<BiConsumer<RealLocalizable, ? super T>>, Supplier<T>) - Constructor for class net.imglib2.position.FunctionRealRandomAccessible
 
FunctionRealRandomAccessible.RealFunctionRealRandomAccess - Class in net.imglib2.position
 
functionSupplier - Variable in class net.imglib2.position.AbstractFunctionEuclideanSpace
 
fuseColor(ImgPlus<? extends RealType<?>>) - Static method in class net.imglib2.img.display.imagej.ImgPlusViews
Generates a color image from a gray scale image that has a color axes of dimension 3.
fwd(int) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
fwd() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
fwd() - Method in class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
 
fwd() - Method in class net.imglib2.algorithm.math.execution.FunctionCursor
 
fwd() - Method in class net.imglib2.algorithm.math.execution.FunctionCursorDouble
 
fwd() - Method in class net.imglib2.algorithm.math.execution.FunctionCursorDoubleIncompatibleOrder
 
fwd() - Method in class net.imglib2.algorithm.math.execution.FunctionCursorIncompatibleOrder
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
fwd(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
fwd(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
fwd(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
fwd(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
fwd(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
fwd(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
fwd(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
fwd() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
fwd() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
fwd() - Method in class net.imglib2.algorithm.region.CircleCursor
 
fwd() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
fwd() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
fwd(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
fwd() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
fwd() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
fwd() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
fwd() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
fwd() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
fwd() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
fwd() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
fwd(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
fwd() - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
fwd(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
fwd() - Method in class net.imglib2.converter.read.BiConvertedCursor
 
fwd(int) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
fwd() - Method in class net.imglib2.converter.read.BiConvertedRealCursor
 
fwd(int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
fwd() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
fwd() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
fwd() - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
 
fwd() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
fwd() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
fwd(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
fwd() - Method in class net.imglib2.img.cell.CellCursor
 
fwd() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
fwd(int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
fwd() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
fwd() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
fwd(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
fwd() - Method in class net.imglib2.img.list.ListCursor
 
fwd() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
fwd(int) - Method in class net.imglib2.img.list.ListRandomAccess
 
fwd() - Method in class net.imglib2.img.planar.PlanarCursor
 
fwd() - Method in class net.imglib2.img.planar.PlanarCursor2D
 
fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
fwd() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
fwd() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
fwd() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
fwd(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
fwd(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
fwd(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
fwd() - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
fwd() - Method in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
fwd(int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
fwd(int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
fwd(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
fwd() - Method in interface net.imglib2.Iterator
Move forward.
fwd() - Method in class net.imglib2.iterator.IntervalIterator
 
fwd() - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
fwd() - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
fwd() - Method in class net.imglib2.KDTree.KDTreeCursor
 
fwd(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
fwd(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
fwd(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
fwd(int) - Method in class net.imglib2.Point
 
fwd() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
fwd(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
fwd(int) - Method in interface net.imglib2.Positionable
Move by 1 in one dimension.
fwd(int) - Method in class net.imglib2.RealPoint
 
fwd() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
fwd(int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
fwd(int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
fwd(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
fwd() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
fwd(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
fwd() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
fwd(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
fwd(int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
fwd() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
fwd() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeIterator
 
fwd() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
fwd() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
 
fwd(int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
fwd(int) - Method in class net.imglib2.roi.util.PositionableInterval
 
fwd() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
fwd(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
fwd(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
fwd(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
fwd(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
fwd(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
fwd() - Method in class net.imglib2.view.iteration.SlicingCursor
Move forward.
fwd(int) - Method in class net.imglib2.view.MixedRandomAccess
 
fwd() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
fwd(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
fwd(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
fwd(int) - Method in class net.imglib2.view.SlicingRandomAccess
 
fwd(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
fwd(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
fwd(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
fwd(int) - Method in class net.imglib2.view.TransformRandomAccess
 
fwd(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
fwdDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves one step forward in dimension 0
fwdDim0() - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
Moves one step forward in dimension 0

G

g - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
gainFromPoles(double[]) - Static method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
gatherObservationData(RandomAccessibleInterval<T>, Localizable, long[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
Collects the points to build the observation array, by iterating in a hypercube around the given location.
Gauss - Class in net.imglib2.algorithm.gauss
Deprecated.
Gauss() - Constructor for class net.imglib2.algorithm.gauss.Gauss
Deprecated.
 
gauss(double[], Img<DoubleType>) - Static method in class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
 
gauss(double[], Img<DoubleType>, OutOfBoundsFactory<DoubleType, Img<DoubleType>>) - Static method in class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
 
gauss(double[], RandomAccessible<DoubleType>, Interval, ImgFactory<DoubleType>) - Static method in class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
 
gauss(double[], RandomAccessible<DoubleType>, Interval, RandomAccessible<DoubleType>, Localizable, ImgFactory<DoubleType>) - Static method in class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
 
gauss(double[], Img<FloatType>) - Static method in class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
 
gauss(double[], Img<FloatType>, OutOfBoundsFactory<FloatType, Img<FloatType>>) - Static method in class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
 
gauss(double[], RandomAccessible<FloatType>, Interval, ImgFactory<FloatType>) - Static method in class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
 
gauss(double[], RandomAccessible<FloatType>, Interval, RandomAccessible<FloatType>, Localizable, ImgFactory<FloatType>) - Static method in class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
 
gauss(double, RandomAccessible<S>, RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.gauss3.Gauss3
Apply Gaussian convolution to source and write the result to target.
gauss(double[], RandomAccessible<S>, RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.gauss3.Gauss3
Apply Gaussian convolution to source and write the result to target.
gauss(double[], RandomAccessible<S>, RandomAccessibleInterval<T>, int) - Static method in class net.imglib2.algorithm.gauss3.Gauss3
Deprecated.
Deprecated. Please use gauss(sigma, source, target) instead. The number of threads used to calculate the Gaussion convolution may by set with the Parallelization context, as show in this example:
 
 Parallelization.runWithNumThreads( numThreads,
    () -> gauss( sigma, source, target )
 );
 
 

Apply Gaussian convolution to source and write the result to output. In-place operation (source==target) is supported.

If the target type T is DoubleType, all calculations are done in double precision. For all other target RealTypes float precision is used. General NumericTypes are computed in their own precision. The source type S and target type T are either both RealTypes or both the same type.

gauss(double[], RandomAccessible<S>, RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.Gauss3
Deprecated.
Deprecated. Please use gauss(sigma, source, target) instead. The ExecutorService used to calculate the Gaussion convolution may by set with the Parallelization context, as show in this example:
 
 Parallelization.runWithExecutor( executorService,
    () -> gauss( sigma, source, target )
 );
 
 

Apply Gaussian convolution to source and write the result to output. In-place operation (source==target) is supported.

If the target type T is DoubleType, all calculations are done in double precision. For all other target RealTypes float precision is used. General NumericTypes are computed in their own precision. The source type S and target type T are either both RealTypes or both the same type.

Gauss3 - Class in net.imglib2.algorithm.gauss3
Gaussian convolution.
Gauss3() - Constructor for class net.imglib2.algorithm.gauss3.Gauss3
 
GaussDouble - Class in net.imglib2.algorithm.gauss
Deprecated.
GaussDouble(double[], RandomAccessible<DoubleType>, Interval, ImgFactory<DoubleType>) - Constructor for class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
Computes a Gaussian convolution with double precision on a RandomAccessible of DoubleType in a certain Interval and returns an Img defined by the ImgFactory containing the result
GaussDouble(double[], RandomAccessible<DoubleType>, Interval, RandomAccessible<DoubleType>, Localizable, ImgFactory<DoubleType>) - Constructor for class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
Computes a Gaussian convolution with double precision on a RandomAccessible of DoubleType in a certain Interval and writes it into a given RandomAccessible at a specific Point
GaussDouble(double[], Img<DoubleType>) - Constructor for class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
GaussDouble(double[], Img<DoubleType>, OutOfBoundsFactory<DoubleType, Img<DoubleType>>) - Constructor for class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img
GaussFloat - Class in net.imglib2.algorithm.gauss
Deprecated.
GaussFloat(double[], RandomAccessible<FloatType>, Interval, ImgFactory<FloatType>) - Constructor for class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
Computes a Gaussian convolution with float precision on a RandomAccessible of FloatType in a certain Interval and returns an Img defined by the ImgFactory containing the result
GaussFloat(double[], RandomAccessible<FloatType>, Interval, RandomAccessible<FloatType>, Localizable, ImgFactory<FloatType>) - Constructor for class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
Computes a Gaussian convolution with float precision on a RandomAccessible of FloatType in a certain Interval and writes it into a given RandomAccessible at a specific Point
GaussFloat(double[], Img<FloatType>) - Constructor for class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
GaussFloat(double[], Img<FloatType>, OutOfBoundsFactory<FloatType, Img<FloatType>>) - Constructor for class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img
GaussGeneral<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss
Deprecated.
GaussGeneral(double[], RandomAccessible<T>, Interval, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.gauss.GaussGeneral
Deprecated.
Computes a Gaussian convolution on a RandomAccessible in a certain Interval and returns an Img defined by the ImgFactory containing the result.
GaussGeneral(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.gauss.GaussGeneral
Deprecated.
Computes a Gaussian convolution with any precision on a RandomAccessible in a certain Interval and writes it into a given RandomAccessible at a specific Point WARNING: This is a very slow implementation as it is not written for NativeType.
GaussGeneral(double[], Img<T>) - Constructor for class net.imglib2.algorithm.gauss.GaussGeneral
Deprecated.
Computes a Gaussian convolution with any precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary WARNING: This is a very slow implementation as it is not written for NativeType.
GaussGeneral(double[], Img<T>, OutOfBoundsFactory<T, Img<T>>) - Constructor for class net.imglib2.algorithm.gauss.GaussGeneral
Deprecated.
Computes a Gaussian convolution with any precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary WARNING: This is a very slow implementation as it is not written for NativeType.
Gaussian - Class in net.imglib2.algorithm.localization
A n-dimensional, symmetric Gaussian peak function.
Gaussian() - Constructor for class net.imglib2.algorithm.localization.Gaussian
 
GaussNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss
Deprecated.
GaussNativeType(double[], RandomAccessible<T>, Interval, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.gauss.GaussNativeType
Deprecated.
Computes a Gaussian convolution on a RandomAccessible in a certain Interval and returns an Img defined by the ImgFactory containing the result.
GaussNativeType(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.gauss.GaussNativeType
Deprecated.
Computes a Gaussian convolution with any precision on a RandomAccessible in a certain Interval and writes it into a given RandomAccessible at a specific Point
GaussNativeType(double[], Img<T>) - Constructor for class net.imglib2.algorithm.gauss.GaussNativeType
Deprecated.
Computes a Gaussian convolution with any precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
GaussNativeType(double[], Img<T>, OutOfBoundsFactory<T, Img<T>>) - Constructor for class net.imglib2.algorithm.gauss.GaussNativeType
Deprecated.
Computes a Gaussian convolution with any precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
gen(List<Point>, T, double) - Static method in class net.imglib2.algorithm.math.ImgMath
 
gen(List<Point>, T, double, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
gen(List<Point>, T, double, Object, Interval) - Static method in class net.imglib2.algorithm.math.ImgMath
 
gen(List<Point>, List<T>, double) - Static method in class net.imglib2.algorithm.math.ImgMath
 
gen(List<Point>, List<T>, double, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
gen(List<Point>, List<T>, double, Object, Interval) - Static method in class net.imglib2.algorithm.math.ImgMath
 
gen(KDTree<T>, double) - Static method in class net.imglib2.algorithm.math.ImgMath
 
gen(KDTree<T>, double, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
gen(KDTree<T>, double, Object, Interval) - Static method in class net.imglib2.algorithm.math.ImgMath
 
GeneralPathRegionOfInterest - Class in net.imglib2.roi
Deprecated.
GeneralPathRegionOfInterest() - Constructor for class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
GeneralPathSegmentHandler - Interface in net.imglib2.roi
Deprecated.
GeneralRectangleShape - Class in net.imglib2.algorithm.neighborhood
A factory for Accessibles on rectangular neighboorhoods.
GeneralRectangleShape(int, int, boolean) - Constructor for class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
generate(Interval, int[], T, Set<AccessFlags>, Consumer<RandomAccessibleInterval<T>>) - Static method in class net.imglib2.algorithm.lazy.Lazy
Create a memory CachedCellImg with a cell generator Consumer.
generateCoords(Localizable, Localizable) - Static method in class net.imglib2.algorithm.region.BresenhamLine
 
generation - Variable in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
generation - Variable in class net.imglib2.labeling.LabelingType
Deprecated.
 
generation - Variable in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
generation - Variable in class net.imglib2.roi.labeling.LabelingType
 
genericArray(int) - Static method in class net.imglib2.util.Util
Deprecated.
GenericByteLongAccessType<T extends GenericByteLongAccessType<T>> - Class in net.imglib2.type.numeric.integer
TODO
GenericByteLongAccessType(NativeLongAccessImg<?, ? extends ByteLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
GenericByteLongAccessType(byte) - Constructor for class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
GenericByteLongAccessType(ByteLongAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
GenericByteLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
GenericByteType<T extends GenericByteType<T>> - Class in net.imglib2.type.numeric.integer
TODO
GenericByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
 
GenericByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
 
GenericByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
 
GenericByteType() - Constructor for class net.imglib2.type.numeric.integer.GenericByteType
 
GenericComposite<T> - Class in net.imglib2.view.composite
A generic vector of scalars T.
GenericComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.GenericComposite
 
GenericComposite.Factory<T> - Class in net.imglib2.view.composite
 
genericIntegerTypeConverter() - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
GenericIntLongAccessType<T extends GenericIntLongAccessType<T>> - Class in net.imglib2.type.numeric.integer
 
GenericIntLongAccessType(NativeLongAccessImg<?, ? extends IntLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
GenericIntLongAccessType(int) - Constructor for class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
GenericIntLongAccessType(IntLongAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
GenericIntLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
GenericIntType<T extends GenericIntType<T>> - Class in net.imglib2.type.numeric.integer
TODO
GenericIntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
 
GenericIntType(int) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
 
GenericIntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
 
GenericIntType() - Constructor for class net.imglib2.type.numeric.integer.GenericIntType
 
GenericLongLongAccessType<T extends GenericLongLongAccessType<T>> - Class in net.imglib2.type.numeric.integer
Abstract superclass for Long types.
GenericLongLongAccessType(NativeLongAccessImg<?, ? extends LongLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
GenericLongLongAccessType(long) - Constructor for class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
GenericLongLongAccessType(LongLongAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
GenericLongLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
GenericLongType<T extends GenericLongType<T>> - Class in net.imglib2.type.numeric.integer
Abstract superclass for Long types.
GenericLongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
 
GenericLongType(long) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
 
GenericLongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
 
GenericLongType() - Constructor for class net.imglib2.type.numeric.integer.GenericLongType
 
genericRealTypeConverter() - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
GenericShortLongAccessType<T extends GenericShortLongAccessType<T>> - Class in net.imglib2.type.numeric.integer
Abstract base class for native IntegerTypes that encode their value into a 16bit short.
GenericShortLongAccessType(NativeLongAccessImg<?, ? extends ShortLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
GenericShortLongAccessType(short) - Constructor for class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
GenericShortLongAccessType(ShortLongAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
GenericShortLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
GenericShortType<T extends GenericShortType<T>> - Class in net.imglib2.type.numeric.integer
Abstract base class for native IntegerTypes that encode their value into a 16bit short.
GenericShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
 
GenericShortType(short) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
 
GenericShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
 
GenericShortType() - Constructor for class net.imglib2.type.numeric.integer.GenericShortType
 
GeomMasks - Class in net.imglib2.roi.geom
Utility class for creating MaskPredicates.
GeomMaths - Class in net.imglib2.roi.geom
Utility class for operations involving geometric shapes.
GeomMaths() - Constructor for class net.imglib2.roi.geom.GeomMaths
 
get() - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
get() - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction
 
get() - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
get() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
get() - Method in class net.imglib2.algorithm.gauss.SamplingLineIterator
Deprecated.
 
get() - Method in class net.imglib2.algorithm.gradient.ScaleAsFunctionOfPosition.ScaledRandomAccess
 
get() - Method in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
get(long, long) - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
get() - Method in class net.imglib2.algorithm.math.execution.FunctionCursor
 
get() - Method in class net.imglib2.algorithm.math.execution.FunctionRandomAccess
 
get() - Method in class net.imglib2.algorithm.math.execution.FunctionRandomAccessDouble
 
get() - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
get() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
get() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
get() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
get() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
get() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
get() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
get() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
get() - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
get() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
get() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
get() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
get() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
get() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
get() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
get() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
get() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
get() - Method in class net.imglib2.algorithm.region.CircleCursor
 
get() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
get() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
get() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
get() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
get() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
get() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
get(int) - Method in interface net.imglib2.algorithm.util.Grids.GetForDimension
 
get(String, Singleton.ThrowingSupplier<T, E>) - Static method in class net.imglib2.algorithm.util.Singleton
Get or create the named singleton instance of T.
get() - Method in interface net.imglib2.algorithm.util.Singleton.ThrowingSupplier
 
get(K) - Method in interface net.imglib2.cache.Cache
 
get(K) - Method in interface net.imglib2.cache.CacheLoader
 
get(T, Set<AccessFlags>) - Static method in interface net.imglib2.cache.img.AccessIo
 
get(PrimitiveType, Set<AccessFlags>) - Static method in interface net.imglib2.cache.img.AccessIo
 
get(Long) - Method in class net.imglib2.cache.img.DiskCellCache
 
get(Long) - Method in class net.imglib2.cache.img.EmptyCellCacheLoader
 
get(CellGrid, T, Set<AccessFlags>) - Static method in class net.imglib2.cache.img.EmptyCellCacheLoader
 
get(CellGrid, Fraction, PrimitiveType, Set<AccessFlags>) - Static method in class net.imglib2.cache.img.EmptyCellCacheLoader
 
get(Long) - Method in class net.imglib2.cache.img.LoadedCellCacheLoader
 
get(CellGrid, CellLoader<T>, T, Set<AccessFlags>) - Static method in class net.imglib2.cache.img.LoadedCellCacheLoader
 
get(CellGrid, CellLoader<T>, T, PrimitiveType, Set<AccessFlags>) - Static method in class net.imglib2.cache.img.LoadedCellCacheLoader
 
get(Long) - Method in class net.imglib2.cache.img.RandomAccessibleCacheLoader
 
get(CellGrid, RandomAccessible<T>, Set<AccessFlags>) - Static method in class net.imglib2.cache.img.RandomAccessibleCacheLoader
 
get(CellGrid, RandomAccessible<T>, T, Set<AccessFlags>) - Static method in class net.imglib2.cache.img.RandomAccessibleCacheLoader
 
get(K) - Method in class net.imglib2.cache.IoSync
 
get(K, CacheLoader<? super K, ? extends V>) - Method in interface net.imglib2.cache.LoaderCache
 
get(K, CacheLoader<? super K, ? extends V>, CacheRemover<? super K, V, D>) - Method in interface net.imglib2.cache.LoaderRemoverCache
 
get(K, CacheLoader<? super K, ? extends V>) - Method in class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
get(K, CacheLoader<? super K, ? extends V>) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
get(K, CacheLoader<? super K, ? extends V>, CacheRemover<? super K, V, D>) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 
get(K, CacheLoader<? super K, ? extends V>) - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
 
get(K, CacheLoader<? super K, ? extends V>, CacheRemover<? super K, V, D>) - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
get(K, CacheLoader<? super K, ? extends V>) - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
 
get(K, CacheHints) - Method in class net.imglib2.cache.ref.WeakRefVolatileCache
 
get(K, VolatileCacheLoader<? super K, ? extends V>, CacheHints) - Method in class net.imglib2.cache.ref.WeakRefVolatileLoaderCache
 
get(K, CacheRemover<? super K, V, D>) - Method in interface net.imglib2.cache.RemoverCache
 
get(K) - Method in interface net.imglib2.cache.UncheckedCache
 
get(K, CacheLoader<? super K, ? extends V>) - Method in interface net.imglib2.cache.UncheckedLoaderCache
 
get(K) - Method in class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
get(K) - Method in class net.imglib2.cache.util.CacheKeyAdapter
 
get(Long) - Method in class net.imglib2.cache.util.IntervalKeyLoaderAsLongKeyLoader
 
get(K) - Method in class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
get(K, CacheLoader<? super K, ? extends V>) - Method in class net.imglib2.cache.util.LoaderCacheKeyAdapter
 
get(K, CacheLoader<? super K, ? extends V>) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
get(K, CacheRemover<? super K, V, D>) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
get(K, CacheLoader<? super K, ? extends V>, CacheRemover<? super K, V, D>) - Method in class net.imglib2.cache.util.LoaderRemoverCacheKeyAdapter
 
get(K) - Method in class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
get(K, CacheRemover<? super K, V, D>) - Method in class net.imglib2.cache.util.RemoverCacheKeyAdapter
 
get(K, CacheHints) - Method in class net.imglib2.cache.util.VolatileCacheAsUncheckedVolatileCacheAdapter
 
get(K, CacheHints) - Method in class net.imglib2.cache.util.VolatileLoaderCacheAsVolatileCacheAdapter
 
get(K, CacheHints) - Method in interface net.imglib2.cache.volatiles.UncheckedVolatileCache
 
get(K, VolatileCacheLoader<? super K, ? extends V>, CacheHints) - Method in interface net.imglib2.cache.volatiles.UncheckedVolatileLoaderCache
 
get(K, CacheHints) - Method in interface net.imglib2.cache.volatiles.VolatileCache
 
get(K, VolatileCacheLoader<? super K, ? extends V>, CacheHints) - Method in interface net.imglib2.cache.volatiles.VolatileLoaderCache
 
get(K, VolatileCacheLoader<? super K, ? extends V>, CacheRemover<? super K, V, D>, CacheHints) - Method in interface net.imglib2.cache.volatiles.VolatileLoaderRemoverCache
 
get(K, CacheRemover<? super K, V, D>, CacheHints) - Method in interface net.imglib2.cache.volatiles.VolatileRemoverCache
 
get() - Method in class net.imglib2.converter.read.BiConvertedCursor
 
get() - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
get() - Method in class net.imglib2.converter.read.BiConvertedRealCursor
 
get() - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
get() - Method in class net.imglib2.converter.read.ConvertedCursor
 
get() - Method in class net.imglib2.converter.read.ConvertedRandomAccess
 
get() - Method in class net.imglib2.converter.read.ConvertedRealCursor
 
get() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
get() - Method in class net.imglib2.converter.readwrite.WriteConvertedCursor
 
get() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
 
get() - Method in class net.imglib2.converter.readwrite.WriteConvertedRealCursor
 
get(int, int) - Method in class net.imglib2.display.AbstractArrayColorTable
Gets an individual value from the color table.
get(int, int) - Method in interface net.imglib2.display.ColorTable
Gets an individual value from the color table.
get(int, int) - Method in class net.imglib2.display.ColorTable16
 
get(int, int) - Method in class net.imglib2.display.ColorTable8
 
get() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
get() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
get() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
get() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.img.array.ArrayRandomAccess
 
get(T) - Static method in class net.imglib2.img.basictypeaccess.ArrayDataAccessFactory
 
get(T, Set<AccessFlags>) - Static method in class net.imglib2.img.basictypeaccess.ArrayDataAccessFactory
 
get(NativeTypeFactory<?, ? super A>) - Static method in class net.imglib2.img.basictypeaccess.ArrayDataAccessFactory
 
get(NativeTypeFactory<?, ? super A>, Set<AccessFlags>) - Static method in class net.imglib2.img.basictypeaccess.ArrayDataAccessFactory
 
get(PrimitiveType, Set<AccessFlags>) - Static method in class net.imglib2.img.basictypeaccess.ArrayDataAccessFactory
 
get(T) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccessFactory
 
get(T, Set<AccessFlags>) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccessFactory
 
get(NativeLongAccessTypeFactory<?, ? super A>) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccessFactory
 
get(NativeLongAccessTypeFactory<?, ? super A>, Set<AccessFlags>) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccessFactory
 
get(PrimitiveType, Set<AccessFlags>) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccessFactory
 
get() - Method in class net.imglib2.img.cell.CellCursor
 
get() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
get() - Method in class net.imglib2.img.cell.CellRandomAccess
 
get(long) - Method in interface net.imglib2.img.cell.LazyCellImg.Get
 
get(long) - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
get(String) - Method in class net.imglib2.img.io.IJLoader
 
get(int) - Method in class net.imglib2.img.list.AbstractListImg
 
get(long) - Method in class net.imglib2.img.list.AbstractLongListImg
 
get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
get() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
get() - Method in class net.imglib2.img.list.ListCursor
 
get(int) - Method in class net.imglib2.img.list.ListImg
 
get() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
get() - Method in class net.imglib2.img.list.ListRandomAccess
 
get() - Method in class net.imglib2.img.planar.PlanarCursor
 
get() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
get() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
get() - Method in class net.imglib2.img.sparse.NtreeCursor
 
get() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
get() - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
get() - Method in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
get() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
get() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
get() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorRealType
Get the interpolated value at the current position.
get() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
Get the interpolated value at the current position.
get() - Method in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
Get the interpolated value at the current position.
get() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
get() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
get() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Get the interpolated value at the current position.
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
get() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
Get the interpolated value at the current position.
get() - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
get() - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
get() - Method in class net.imglib2.KDTree.KDTreeCursor
 
get() - Method in class net.imglib2.KDTree.SamplerNode
 
get() - Method in class net.imglib2.KDTree.ValueNode
 
get() - Method in class net.imglib2.labeling.LabelingConvertedCursor
Deprecated.
 
get() - Method in class net.imglib2.labeling.LabelingConvertedRandomAccess
Deprecated.
 
get(int) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
get() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
get() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
get() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
get() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
get() - Method in class net.imglib2.position.FunctionRandomAccessible.FunctionRandomAccess
 
get() - Method in class net.imglib2.position.FunctionRealRandomAccessible.RealFunctionRealRandomAccess
 
get() - Method in class net.imglib2.position.PositionRandomAccessible.PositionRandomAccess
 
get() - Method in class net.imglib2.position.RealPositionRealRandomAccessible.RealPositionRealRandomAccess
 
get() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
get(int, int) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
get(int, int) - Method in class net.imglib2.realtransform.AbstractScale
 
get(int, int) - Method in class net.imglib2.realtransform.AbstractTranslation
 
get(int, int) - Method in interface net.imglib2.realtransform.AffineGet
Get a field of the n×(n+1) affine transformation matrix.
get() - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
get() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
get(int, int) - Method in class net.imglib2.realtransform.AffineTransform2D
 
get(int, int) - Method in class net.imglib2.realtransform.AffineTransform3D
 
get() - Method in class net.imglib2.realtransform.PositionRandomAccessible.PositionRandomAccess
 
get() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible.RealPositionRealRandomAccess
 
get() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
get() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
get(int, int) - Method in class net.imglib2.realtransform.Scale2D
 
get(int, int) - Method in class net.imglib2.realtransform.Scale3D
 
get(int, int) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
get() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
get() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
get() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
get() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
get() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess4
 
get() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess8
 
get() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
get() - Method in class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
 
get() - Method in class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
 
get() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
get() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
get() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
get() - Method in class net.imglib2.roi.util.SamplingCursor
 
get() - Method in interface net.imglib2.Sampler
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in interface net.imglib2.type.BasePairType
 
get() - Method in interface net.imglib2.type.BooleanType
 
get() - Method in class net.imglib2.type.Index
Get the index.
get() - Method in class net.imglib2.type.label.BasePairBitType
 
get() - Method in class net.imglib2.type.label.BasePairCharType
 
get() - Method in class net.imglib2.type.logic.BitType
 
get() - Method in class net.imglib2.type.logic.BoolType
 
get() - Method in class net.imglib2.type.logic.NativeBoolType
Returns the primitive boolean value that is used to store this type.
get() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
get() - Method in class net.imglib2.type.numeric.ARGBType
 
get() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
get() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
get() - Method in class net.imglib2.type.numeric.integer.ByteType
 
get() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
get() - Method in class net.imglib2.type.numeric.integer.IntType
 
get() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
get() - Method in class net.imglib2.type.numeric.integer.LongType
 
get() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
get() - Method in class net.imglib2.type.numeric.integer.ShortType
 
get() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
get() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
get() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
get() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
This method returns the value of the UnsignedLongType as a signed long.
get() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
This method returns the value of the UnsignedLongType as a signed long.
get() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
get() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
get() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
get() - Method in class net.imglib2.type.numeric.real.DoubleType
 
get() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
get() - Method in class net.imglib2.type.numeric.real.FloatType
 
get(long) - Method in class net.imglib2.view.composite.AbstractComposite
 
get(long) - Method in interface net.imglib2.view.composite.Composite
Get the ith scalar value of the Composite.
get() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
get() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
get() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
get() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
get() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
get() - Method in class net.imglib2.view.iteration.SlicingCursor
Access the actual T instance providing access to a pixel, sub-pixel or integral region value the Sampler points at.
get() - Method in class net.imglib2.view.MixedRandomAccess
 
get() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
get() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
get() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
get() - Method in class net.imglib2.view.SlicingRandomAccess
 
get() - Method in class net.imglib2.view.StackView.DefaultRA
 
get() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
get() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
get() - Method in class net.imglib2.view.TransformRandomAccess
 
get() - Method in class net.imglib2.view.TranslationRandomAccess
 
get() - Method in class net.imglib2.Volatile
 
getA() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
getA() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
getA() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getA() - Method in interface net.imglib2.util.Pair
 
getA() - Method in class net.imglib2.util.ValuePair
 
getA() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getAboveNodes() - Method in class net.imglib2.algorithm.kdtree.SplitHyperPlaneKDTree
 
getAccessType() - Method in class net.imglib2.cache.img.CachedCellImg
 
getAdditionalNormalization() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getAddres() - Method in class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
getAddres() - Method in class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
getAddres() - Method in class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
getAddres() - Method in class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
getAddres() - Method in class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
getAddres() - Method in class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
getAddres() - Method in class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
getAddress() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.AbstractOwningUnsafe
 
getAddress() - Method in interface net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccess
 
getAddress(Object) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil
 
getAddress() - Method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil.OwningUnsafe
 
getAllowedToMoveInDim() - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
getAllowMaximaTolerance() - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
getAlpha() - Method in class net.imglib2.converter.RealARGBConverter
 
getAlpha() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
 
getArea(T) - Method in class net.imglib2.labeling.AbstractLabeling
Deprecated.
Return the area or suitable N-d analog of the labeled object
getArea(T) - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
getArea(T) - Method in interface net.imglib2.labeling.Labeling
Deprecated.
Return the area or suitable N-d analog of the labeled object
getArea(T) - Method in interface net.imglib2.labeling.LabelingROIStrategy
Deprecated.
Return the area of the labeled object in units of pixels or the volume of the labeled object in voxels (or the hyper-volume of the 4/5-d object in ?toxels? or ?spectracels? or ?spectratoxels?)
getArea(L) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
getArrayFromValue(double, int) - Static method in class net.imglib2.util.Util
 
getArrayFromValue(float, int) - Static method in class net.imglib2.util.Util
 
getArrayFromValue(int, int) - Static method in class net.imglib2.util.Util
 
getArrayFromValue(long, int) - Static method in class net.imglib2.util.Util
 
getArrayLength() - Method in class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
getArrayLength() - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
getArrayLength() - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
getArrayLength() - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
getArrayLength() - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
getArrayLength() - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
getArrayLength() - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
getArrayLength() - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
getArrayLength() - Method in interface net.imglib2.img.basictypeaccess.array.ArrayDataAccess
 
getArrayLength() - Method in class net.imglib2.img.io.proxyaccess.ByteAccessProxy
 
getArrayLength() - Method in class net.imglib2.img.io.proxyaccess.FloatAccessProxy
 
getArrayLength() - Method in class net.imglib2.img.io.proxyaccess.IntAccessProxy
 
getArrayLength() - Method in class net.imglib2.img.io.proxyaccess.LongAccessProxy
 
getArrayLength() - Method in class net.imglib2.img.io.proxyaccess.ShortAccessProxy
 
getArrayOrCellImgFactory(Dimensions, T) - Static method in class net.imglib2.util.Util
Create an ArrayImgFactory if an image of the requested targetSize could be held in an ArrayImg.
getArrayOrCellImgFactory(Dimensions, int, T) - Static method in class net.imglib2.util.Util
Create an ArrayImgFactory if an image of the requested targetSize could be held in an ArrayImg.
getAt(long...) - Method in interface net.imglib2.RandomAccessible
Convenience method to query a RandomAccessible for the value at a position.
getAt(int...) - Method in interface net.imglib2.RandomAccessible
Convenience method to query a RandomAccessible for the value at a position.
getAt(Localizable) - Method in interface net.imglib2.RandomAccessible
Convenience method to query a RandomAccessible for the value at a position.
getAt(float...) - Method in interface net.imglib2.RealRandomAccessible
Convenience method to query a RealRandomAccessible for the value at a position.
getAt(double...) - Method in interface net.imglib2.RealRandomAccessible
Convenience method to query a RealRandomAccessible for the value at a position.
getAt(RealLocalizable) - Method in interface net.imglib2.RealRandomAccessible
Convenience method to query a RealRandomAccessible for the value at a position.
getB() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
getB() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
getB() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getB() - Method in interface net.imglib2.util.Pair
 
getB() - Method in class net.imglib2.util.ValuePair
 
getB() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getBeginBandPassRadius() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
getBelowNodes() - Method in class net.imglib2.algorithm.kdtree.SplitHyperPlaneKDTree
 
getBiggestDimension(Interval) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
 
getBigInteger() - Method in class net.imglib2.type.logic.BitType
 
getBigInteger() - Method in class net.imglib2.type.logic.BoolType
 
getBigInteger() - Method in class net.imglib2.type.logic.NativeBoolType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.IntType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.LongType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
This method returns the unsigned representation of this UnsignedLongType as a BigInteger.
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
This method returns the unsigned representation of this UnsignedLongType as a BigInteger.
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getBigInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getBigInteger() - Method in interface net.imglib2.type.numeric.IntegerType
 
getBin(T) - Method in class net.imglib2.algorithm.stats.Histogram
Returns the bin count corresponding to a given Type.
getBin(int) - Method in class net.imglib2.algorithm.stats.Histogram
Returns the bin count given by the indicated bin index.
getBinCenter(int) - Method in class net.imglib2.algorithm.stats.Histogram
Creates and returns the a Type whose value corresponds to the center of the bin indexed by i.
getBinCenters() - Method in class net.imglib2.algorithm.stats.Histogram
Creates and returns a List containing Types that correspond to the centers of the histogram bins.
getBinCount() - Method in interface net.imglib2.histogram.BinMapper1d
Returns the number of bins within this bin mapping distribution.
getBinCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the number of bins contained in the histogram.
getBinCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the number of bins contained in the histogram.
getBinCount() - Method in class net.imglib2.histogram.Integer1dBinMapper
 
getBinCount() - Method in class net.imglib2.histogram.Real1dBinMapper
 
getBinMapper() - Method in class net.imglib2.algorithm.stats.Histogram
Returns this Histogram's HistogramBinMapper.
getBinWidth() - Method in class net.imglib2.algorithm.stats.RealBinMapper
 
getBitDepth() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getBits() - Method in interface net.imglib2.display.ArrayColorTable
Gets the number of bits in each color component value.
getBits() - Method in class net.imglib2.display.ColorTable16
 
getBits() - Method in class net.imglib2.display.ColorTable8
 
getBits() - Method in class net.imglib2.type.AbstractBit64Type
Writes the current "subLong" location of the LongAccess into the lower nBits bits of the long value Note that "long value" does not refer to math, it is just a way to help to return arbitrary values.
getBitsPerPixel(T) - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
getBitsPerPixel() - Method in class net.imglib2.type.logic.BitType
 
getBitsPerPixel() - Method in class net.imglib2.type.logic.BoolType
 
getBitsPerPixel() - Method in class net.imglib2.type.logic.NativeBoolType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getBitsPerPixel() - Method in class net.imglib2.type.numeric.real.FloatType
 
getBitsPerPixel() - Method in interface net.imglib2.type.numeric.RealType
 
getBitsPerPixel() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getBorderAfter() - Method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussConvolverRealType
 
getBorderAfter() - Method in class net.imglib2.algorithm.convolution.kernel.KernelConvolverFactory
 
getBorderAfter() - Method in interface net.imglib2.algorithm.convolution.LineConvolverFactory
When doing a convolution, a neighborhood of a pixel needs to be known.
getBorderBefore() - Method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussConvolverRealType
 
getBorderBefore() - Method in class net.imglib2.algorithm.convolution.kernel.KernelConvolverFactory
 
getBorderBefore() - Method in interface net.imglib2.algorithm.convolution.LineConvolverFactory
When doing a convolution, a neighborhood of a pixel needs to be known.
getBoundingBoxMax() - Method in interface net.imglib2.roi.util.iterationcode.IterationCode
 
getBoundingBoxMax() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
getBoundingBoxMin() - Method in interface net.imglib2.roi.util.iterationcode.IterationCode
 
getBoundingBoxMin() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
getBounds(Collection<? extends Localizable>) - Static method in class net.imglib2.roi.geom.GeomMaths
 
getBoundsReal(Collection<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMaths
 
getBoundsReal(double[][]) - Static method in class net.imglib2.roi.geom.GeomMaths
Finds the smallest RealInterval which contains all vertices.
getBoundsReal(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMaths
Finds the smallest RealInterval which contains all x, y coordinates.
getByte() - Method in class net.imglib2.type.numeric.integer.GenericByteType
Returns the primitive byte value that is used to store this type.
getBytesPerElement() - Method in class net.imglib2.cache.img.AccessIo.AbstractByteArrayIo
 
getBytesPerElement() - Method in class net.imglib2.cache.img.AccessIo.AbstractCharArrayIo
 
getBytesPerElement() - Method in class net.imglib2.cache.img.AccessIo.AbstractDoubleArrayIo
 
getBytesPerElement() - Method in class net.imglib2.cache.img.AccessIo.AbstractFloatArrayIo
 
getBytesPerElement() - Method in class net.imglib2.cache.img.AccessIo.AbstractIntArrayIo
 
getBytesPerElement() - Method in class net.imglib2.cache.img.AccessIo.AbstractLongArrayIo
 
getBytesPerElement() - Method in class net.imglib2.cache.img.AccessIo.AbstractShortArrayIo
 
getBytesPerElement() - Method in interface net.imglib2.cache.img.AccessIo
 
getCache() - Method in class net.imglib2.cache.img.CachedCellImg
 
getCachedSize() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
getCachedSize() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
Scan the image, counting bits once, then return the cached value.
getCanMoveOutside() - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
getCell() - Method in interface net.imglib2.img.cell.AbstractCellImg.CellImgSampler
 
getCell() - Method in class net.imglib2.img.cell.CellCursor
 
getCell() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
getCell() - Method in class net.imglib2.img.cell.CellRandomAccess
 
getCellDimension(int, long) - Method in class net.imglib2.img.cell.CellGrid
From the position of a cell in the grid, compute the size of the cell in dimension d.
getCellDimensions(long, long[], int[]) - Method in class net.imglib2.img.cell.CellGrid
From the index of a cell in the grid, compute the image position of the first pixel of the cell (the offset of the cell in image coordinates) and the dimensions of the cell.
getCellDimensions(long[], long[], int[]) - Method in class net.imglib2.img.cell.CellGrid
From the position of a cell in the grid, compute the image position of the first pixel of the cell (the offset of the cell in image coordinates) and the dimensions of the cell.
getCellDimensions(int[], int, Fraction) - Static method in class net.imglib2.img.cell.CellImgFactory
Computes cell size array by truncating or expanding defaultCellDimensions to length n.
getCellGrid() - Method in class net.imglib2.img.cell.AbstractCellImg
Get the CellGrid which describes the layout of the AbstractCellImg.
getCellGridPositionFlat(long, long[]) - Method in class net.imglib2.img.cell.CellGrid
From the flattened index of a cell in the grid, compute the position of a cell in the grid.
getCellMin(int, long) - Method in class net.imglib2.img.cell.CellGrid
From the position of a cell in the grid, compute the image position in dimension d of the first pixel of the cell (the offset of the cell in image coordinates).
getCellPosition(long[], long[]) - Method in class net.imglib2.img.cell.CellGrid
Get the grid position of the cell containing the element at position.
getCellPosition(long[], Positionable) - Method in class net.imglib2.img.cell.CellGrid
Get the grid position of the cell containing the element at position.
getCells() - Method in class net.imglib2.img.cell.AbstractCellImg
Get the underlying image of cells which gives access to the individual Cells through Cursors and RandomAccesses.
getCenter(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
getCenter(int) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
getCenterOfMass() - Method in class net.imglib2.roi.labeling.LabelRegion
 
getCenterValue(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
Gets the data value associated with the center of a bin.
getCenterValue(long, T) - Method in class net.imglib2.histogram.Histogram1d
Gets the value associated with the center of a bin.
getCenterValue(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
getCenterValue(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
 
getCenterValues(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
Gets the values associated with the center of a bin.
getChannels() - Method in class net.imglib2.img.imageplus.ImagePlusImg
 
getChar() - Method in enum net.imglib2.type.label.BasePairBitType.Base
 
getChar() - Method in class net.imglib2.type.label.BasePairCharType
 
getChildren() - Method in interface net.imglib2.algorithm.componenttree.Component
Get the children of this node in the ComponentTree.
getChildren() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
Get the children of this node in the MserTree.
getChildren() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponent
Get the children of this node in the PixelListComponentTree.
getChildren() - Method in interface net.imglib2.algorithm.tree.TreeNode
Get the children of this node in the Tree.
getChildren() - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
 
getClipping() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
 
getCodedSignedByte(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getCodedSignedByte(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getCodedSignedByteChecked(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getCodedSignedByteChecked(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getCodedSignedInt(long) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getCodedSignedInt(long) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getCodedSignedIntChecked(long) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getCodedSignedIntChecked(long) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getCodedSignedShort(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getCodedSignedShort(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getCodedSignedShortChecked(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getCodedSignedShortChecked(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getCol(int, double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
extract column c of A into vector b.
getColorModel() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getCommonFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getCommonRelativeFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getComplexConjugate() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
getComponentCount() - Method in class net.imglib2.display.AbstractArrayColorTable
 
getComponentCount() - Method in interface net.imglib2.display.ColorTable
Gets the number of color components in the table (typically 3 for RGB or 4 for RGBA).
getComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentInversion(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentInversion(boolean[]) - Method in interface net.imglib2.transform.integer.Mixed
Get an array indicating for each target component, whether the source component it is taken from should be inverted.
getComponentInversion(int) - Method in interface net.imglib2.transform.integer.Mixed
Get the d-th component of inversion vector (see Mixed.getComponentInversion(boolean[])).
getComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentInversion(int) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentMapping(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getComponentMapping(int) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getComponentMapping(int[]) - Method in interface net.imglib2.transform.integer.Mixed
Get an array indicating for each target dimensions from which source dimension it is taken.
getComponentMapping(int) - Method in interface net.imglib2.transform.integer.Mixed
Get the source dimension which is mapped to the d-th target dimension (see Mixed.getComponentMapping(int[])).
getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentMapping(int) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentMapping(int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getComponentMapping(int) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentZero(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getComponentZero(boolean[]) - Method in interface net.imglib2.transform.integer.Mixed
Get a boolean array indicating which target dimensions are _not_ taken from source dimensions.
getComponentZero(int) - Method in interface net.imglib2.transform.integer.Mixed
Get the d-th component of zeroing vector (see Mixed.getComponentZero(boolean[])).
getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentZero(int) - Method in class net.imglib2.transform.integer.MixedTransform
 
getComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getComponentZero(int) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getConcatenableClass() - Method in interface net.imglib2.concatenate.Concatenable
 
getConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform
 
getConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform2D
 
getConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform3D
 
getConcatenableClass() - Method in class net.imglib2.realtransform.Scale
 
getConcatenableClass() - Method in class net.imglib2.realtransform.Scale2D
 
getConcatenableClass() - Method in class net.imglib2.realtransform.Scale3D
 
getConcatenableClass() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
getConcatenableClass() - Method in class net.imglib2.realtransform.Translation
 
getConcatenableClass() - Method in class net.imglib2.realtransform.Translation2D
 
getConcatenableClass() - Method in class net.imglib2.realtransform.Translation3D
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.MixedTransform
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.SlicingTransform
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform
 
getConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getConverter() - Method in class net.imglib2.converter.read.BiConvertedIterableInterval
Returns an instance of the BiConverter.
getConverter() - Method in class net.imglib2.converter.read.BiConvertedIterableRealInterval
Returns an instance of the Converter.
getConverter() - Method in class net.imglib2.converter.read.BiConvertedRandomAccessible
Returns an instance of the BiConverter.
getConverter() - Method in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
Returns an instance of the BiConverter.
getConverter() - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
Returns an instance of the BiConverter.
getConverter() - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
Returns an instance of the BiConverter.
getConverter() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
Returns an instance of the Converter.
getConverter() - Method in class net.imglib2.converter.read.ConvertedIterableRealInterval
Returns an instance of the Converter.
getConverter() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
Returns an instance of the Converter.
getConverter() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
Returns an instance of the Converter.
getConverter() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
Returns an instance of the Converter.
getConverter() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
Returns an instance of the Converter.
getConverter(S, T) - Static method in class net.imglib2.converter.RealTypeConverters
Returns a converter that converts from input to output type.
getConvolver(RandomAccess<? extends RealType<?>>, RandomAccess<? extends RealType<?>>, int, long) - Method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussConvolverRealType
 
getConvolver(RandomAccess<? extends NumericType<?>>, RandomAccess<? extends NumericType<?>>, int, long) - Method in class net.imglib2.algorithm.convolution.kernel.KernelConvolverFactory
 
getConvolver(RandomAccess<? extends T>, RandomAccess<? extends T>, int, long) - Method in interface net.imglib2.algorithm.convolution.LineConvolverFactory
The Runnable returned by this method is responsible for convolving on line of the image.
getCropBackToOriginalSize() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getCumulativeIoNanoTime() - Method in class net.imglib2.cache.iotiming.IoStatistics
 
getCurrentFrame() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
 
getCurrentSliceIndex() - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
 
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarCursor
 
getCurrentSliceIndex() - Method in interface net.imglib2.img.planar.PlanarImg.PlanarContainerSampler
 
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
getCurrentSliceIndex() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
getCurrentStorageArray() - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
getCurrentStorageArray() - Method in interface net.imglib2.img.basictypeaccess.array.ArrayDataAccess
 
getCurrentStorageArray() - Method in class net.imglib2.img.io.proxyaccess.ByteAccessProxy
 
getCurrentStorageArray() - Method in class net.imglib2.img.io.proxyaccess.FloatAccessProxy
 
getCurrentStorageArray() - Method in class net.imglib2.img.io.proxyaccess.IntAccessProxy
 
getCurrentStorageArray() - Method in class net.imglib2.img.io.proxyaccess.LongAccessProxy
 
getCurrentStorageArray() - Method in class net.imglib2.img.io.proxyaccess.ShortAccessProxy
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.BooleanNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.ByteNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.CharNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.DoubleNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.FloatNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.IntNtree
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.LongNtree
 
getCurrentStorageNtree() - Method in interface net.imglib2.img.sparse.NtreeAccess
 
getCurrentStorageNtree() - Method in class net.imglib2.img.sparse.ShortNtree
 
getCursor() - Method in interface net.imglib2.algorithm.math.abstractions.IImgSourceIterable
 
getCursor() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
getCursor() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
getCustomOutOfBoundsStrategy() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getData() - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
getData(int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
getData() - Method in class net.imglib2.display.awt.SignedShortDataBuffer
 
getData(int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
 
getData() - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getData(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getData() - Method in class net.imglib2.display.screenimage.awt.ARGBScreenImage
The underlying array holding the data.
getData() - Method in class net.imglib2.img.cell.Cell
Get the basic type array that stores this cells pixels.
getDenominator() - Method in class net.imglib2.util.Fraction
 
getDepth() - Method in class net.imglib2.img.imageplus.ImagePlusImg
 
getDestinationType() - Method in class net.imglib2.converter.read.BiConvertedIterableInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.BiConvertedIterableRealInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.BiConvertedRandomAccessible
 
getDestinationType() - Method in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
getDestinationType() - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedIterableRealInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
getDestinationType() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
getDiffusionTensor() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
getDimenionsCopy() - Method in exception net.imglib2.exception.InvalidDimensionsException
 
getDimensions() - Method in class net.imglib2.labeling.BoundingBox
Deprecated.
 
getDirection() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
getDirectory() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getDistance() - Method in class net.imglib2.algorithm.kdtree.HyperPlane
 
getDistance(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Access the Euclidean distance between the reference location as used for the last search and the ith nearest neighbor, ordered by square Euclidean distance.
getDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getDistance() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Access the Euclidean distance between the reference location as used for the last search and the nearest neighbor, ordered by square Euclidean distance.
getDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
getDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
getDistance(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Access the Euclidean distance between the reference location as used for the last search and the ith neighbor.
getDistance(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
getDistanceSquared() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
getDistanceSquared() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
getDiv() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
getDomainSpan() - Method in class net.imglib2.algorithm.localization.MLEllipticGaussianEstimator
 
getDomainSpan() - Method in class net.imglib2.algorithm.localization.MLGaussianEstimator
 
getDomainSpan() - Method in interface net.imglib2.algorithm.localization.StartPointEstimator
Returns the domain size that will be sampled around each peak for curve fitting.
getDoScaling() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getDoublePosition(int) - Method in class net.imglib2.AbstractCursor
 
getDoublePosition(int) - Method in class net.imglib2.AbstractCursorInt
 
getDoublePosition(int) - Method in class net.imglib2.AbstractLocalizable
 
getDoublePosition(int) - Method in class net.imglib2.AbstractLocalizableInt
 
getDoublePosition(int) - Method in class net.imglib2.AbstractRealLocalizable
 
getDoublePosition(int) - Method in class net.imglib2.AbstractWrappedLocalizable
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.region.CircleCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
getDoublePosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
getDoublePosition(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
getDoublePosition(int) - Method in class net.imglib2.iterator.IntervalIterator
 
getDoublePosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
getDoublePosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
getDoublePosition(int) - Method in class net.imglib2.KDTree.KDTreeCursor
 
getDoublePosition(int) - Method in class net.imglib2.KDTreeNode
 
getDoublePosition(int) - Method in interface net.imglib2.Localizable
 
getDoublePosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
getDoublePosition(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
getDoublePosition(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
getDoublePosition(int) - Method in interface net.imglib2.RealLocalizable
Return the current position in a given dimension.
getDoublePosition(int) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
getDoublePosition(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
getDoublePosition(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
getDoublePosition(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.roi.util.OffsetLocalizable
 
getDoublePosition(int) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
getDoublePosition(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
getDoublePosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
Return the current position in a given dimension.
getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
getDoublePosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
getDoublePosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
getDoublePosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
getDoublePosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
getDoubleValue() - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
getEdgeEnd(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Get the coordinates of the second vertex of the indexed edge
getEdgels(RandomAccessibleInterval<T>, ImgFactory<T>, double) - Static method in class net.imglib2.algorithm.edge.SubpixelEdgelDetection
Compute the set of sub-pixel edgels for the input image.
getEdges(double[], double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Get the closest edge to the left of this one
getEdgeStart(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Get the coordinates of the first vertex of the indexed edge
getEfficientIterableInterval(Interval, RandomAccessible<S>) - Static method in class net.imglib2.view.iteration.IterableTransformBuilder
Create an IterableInterval that iterates an Interval of a RandomAccessible.
getEfficientRandomAccessible(Interval, RandomAccessible<S>) - Static method in class net.imglib2.view.TransformBuilder
Get a RandomAccessible which provides RandomAccess to the specified interval of randomAccessible.
getElem(int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
getElem(int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
getElem(int, int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
 
getElem(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElem(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElemDouble(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElemDouble(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElemFloat(int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getElemFloat(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
getEndBandPassRadius() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
getEntitiesPerPixel() - Method in class net.imglib2.type.AbstractBitType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.label.BasePairCharType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.logic.BitType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.logic.NativeBoolType
 
getEntitiesPerPixel() - Method in interface net.imglib2.type.NativeLongAccessType
Get the number of entities in the storage array required to store one pixel value.
getEntitiesPerPixel() - Method in interface net.imglib2.type.NativeType
Get the number of entities in the storage array required to store one pixel value.
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.ARGBType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.numeric.real.FloatType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.volatiles.AbstractVolatileNativeNumericType
 
getEntitiesPerPixel() - Method in class net.imglib2.type.volatiles.AbstractVolatileNativeRealType
 
getError() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
getErrorMessage() - Method in interface net.imglib2.algorithm.Algorithm
 
getErrorMessage() - Method in class net.imglib2.algorithm.BenchmarkAlgorithm
 
getErrorMessage() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
getErrorMessage() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
getErrorMessage() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getErrorMessage() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getErrorMessage() - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
getErrorMessage() - Method in class net.imglib2.algorithm.integral.IntegralImg
 
getErrorMessage() - Method in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
getErrorMessage() - Method in class net.imglib2.algorithm.labeling.Watershed
 
getErrorMessage() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
getErrorMessage() - Method in class net.imglib2.algorithm.math.PickImagePeaks
 
getErrorMessage() - Method in class net.imglib2.algorithm.MultiThreadedAlgorithm
 
getErrorMessage() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
getErrorMessage() - Method in class net.imglib2.algorithm.stats.Histogram
 
getErrorMessage() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
getErrorVector() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
getEstimate() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
getExecutorService() - Method in class net.imglib2.parallel.DefaultTaskExecutor
 
getExecutorService() - Static method in class net.imglib2.parallel.Parallelization
 
getExecutorService() - Method in interface net.imglib2.parallel.TaskExecutor
Get the underlying ExecutorService.
getExistingLabels() - Method in class net.imglib2.roi.labeling.LabelRegions
Get the set of labels which actually occur at some pixel in the labeling.
getExponent() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getExtendedImageSize(RandomAccessibleInterval<?>, int[]) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getExtendedSize() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
Gets default value for neighborhood pixels outside of the image.
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Bridge
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Clean
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Endpoints
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Fill
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Hbreak
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Life
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Majority
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Remove
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Thicken
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Thin1
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Thin2
 
getExtendedValue() - Method in class net.imglib2.algorithm.morphology.table2d.Vbreak
 
getExtent(RealPositionable) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Write the extent into a RealPositionable
getExtent(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Copy the extents of the rectangle into the array provided
getExtent(int) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Get the extent of the rectangle in one dimension
getExtents(T, long[], long[]) - Method in class net.imglib2.labeling.AbstractLabeling
Deprecated.
find the coordinates of the bounding box around the given label.
getExtents(long[], long[]) - Method in class net.imglib2.labeling.BoundingBox
Deprecated.
the minimum and maximum extents of the box
getExtents(T, long[], long[]) - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
getExtents(T, long[], long[]) - Method in interface net.imglib2.labeling.Labeling
Deprecated.
find the coordinates of the bounding box around the given label.
getExtents(T, long[], long[]) - Method in interface net.imglib2.labeling.LabelingROIStrategy
Deprecated.
Get the extents of the bounding box around the labeled object
getExtents(L, long[], long[]) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
getExtrema(long[], long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
Get the minimum and maximum corners of a bounding hypercube around all points in the ROI.
getExtrema(long[], long[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
getExtrema(long[], long[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
getExtrema(long[], long[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
getFactory() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getFactory() - Method in enum net.imglib2.algorithm.labeling.ConnectedComponents.StructuringElement
 
getFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getFFOptimization() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getFFTFactory(Img<? extends RealType<?>>) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
getFFTInputOffset() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getFFTInputSize() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getFileName(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getFirst() - Method in class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
getFirst() - Method in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
getFirst() - Method in class net.imglib2.algorithm.math.abstractions.AUnaryFunction
 
getFirst() - Method in interface net.imglib2.algorithm.math.abstractions.IUnaryFunction
 
getFirst() - Method in class net.imglib2.algorithm.math.Let
 
getFirstArrayElementAddress(Object) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil
 
getFirstPosition() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
getFirstRelativePosition() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
getFloatPosition(int) - Method in class net.imglib2.AbstractCursor
 
getFloatPosition(int) - Method in class net.imglib2.AbstractCursorInt
 
getFloatPosition(int) - Method in class net.imglib2.AbstractLocalizable
 
getFloatPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
 
getFloatPosition(int) - Method in class net.imglib2.AbstractRealLocalizable
 
getFloatPosition(int) - Method in class net.imglib2.AbstractWrappedLocalizable
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.region.CircleCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
getFloatPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
getFloatPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
getFloatPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
 
getFloatPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
getFloatPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
getFloatPosition(int) - Method in class net.imglib2.KDTree.KDTreeCursor
 
getFloatPosition(int) - Method in class net.imglib2.KDTreeNode
 
getFloatPosition(int) - Method in interface net.imglib2.Localizable
 
getFloatPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
getFloatPosition(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
getFloatPosition(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
getFloatPosition(int) - Method in interface net.imglib2.RealLocalizable
Return the current position in a given dimension.
getFloatPosition(int) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
getFloatPosition(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
getFloatPosition(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
getFloatPosition(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.roi.util.OffsetLocalizable
 
getFloatPosition(int) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
getFloatPosition(int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
getFloatPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
Return the current position in a given dimension.
getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
getFloatPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
getFloatPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
getFloatPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
getFloatPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
getFrames() - Method in class net.imglib2.img.imageplus.ImagePlusImg
 
getFullViewIterableInterval() - Method in class net.imglib2.view.IntervalView
 
getG() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
getG() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
getG() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getGeneralPath() - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
getGeneration() - Method in class net.imglib2.roi.labeling.LabelingType
The underlying storage has an associated generation which is incremented every time the storage is modified.
getGradient() - Method in class net.imglib2.algorithm.edge.Edgel
Get the gradient direction at the edgel position.
GetGridCoordinates(int[], long[]) - Constructor for class net.imglib2.algorithm.util.Grids.GetGridCoordinates
 
GetGridCoordinates(int[], Interval) - Constructor for class net.imglib2.algorithm.util.Grids.GetGridCoordinates
Convenience constructor for Interval.
GetGridCoordinates(int[]) - Constructor for class net.imglib2.algorithm.util.Grids.GetGridCoordinates
Convenience constructor for zero min grid.
getGridDimensions() - Method in class net.imglib2.img.cell.CellGrid
 
getHeight() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getHeight() - Method in class net.imglib2.img.imageplus.ImagePlusImg
 
getHistogram() - Method in class net.imglib2.algorithm.stats.Histogram
Returns the histogram array.
getHyperplanes() - Method in class net.imglib2.algorithm.kdtree.ConvexPolytope
 
getIfPresent(K) - Method in interface net.imglib2.cache.AbstractCache
 
getIfPresent(K) - Method in class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
getIfPresent(K) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
getIfPresent(K) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 
getIfPresent(K) - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
 
getIfPresent(K) - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
getIfPresent(K) - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
 
getIfPresent(Object, CacheHints) - Method in class net.imglib2.cache.ref.WeakRefVolatileCache
 
getIfPresent(Object, CacheHints) - Method in class net.imglib2.cache.ref.WeakRefVolatileLoaderCache
 
getIfPresent(K) - Method in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
getIfPresent(K) - Method in class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
getIfPresent(K) - Method in class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
getIfPresent(K) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
getIfPresent(K) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
getIfPresent(K) - Method in class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
getIfPresent(K, CacheHints) - Method in class net.imglib2.cache.util.VolatileCacheAsUncheckedVolatileCacheAdapter
 
getIfPresent(K, CacheHints) - Method in class net.imglib2.cache.util.VolatileLoaderCacheAsVolatileCacheAdapter
 
getIfPresent(K, CacheHints) - Method in interface net.imglib2.cache.volatiles.AbstractUncheckedVolatileCache
 
getIfPresent(K, CacheHints) - Method in interface net.imglib2.cache.volatiles.AbstractVolatileCache
 
getImage() - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
getImageArray() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getImageExtension() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getImagePlus() - Method in class net.imglib2.img.imageplus.ByteImagePlus
 
getImagePlus() - Method in class net.imglib2.img.imageplus.FloatImagePlus
 
getImagePlus() - Method in class net.imglib2.img.imageplus.ImagePlusImg
 
getImagePlus() - Method in class net.imglib2.img.imageplus.IntImagePlus
 
getImagePlus() - Method in class net.imglib2.img.imageplus.ShortImagePlus
 
getImageSigma() - Method in class net.imglib2.algorithm.dog.DogDetection
 
getImageType() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getImaginaryDouble() - Method in interface net.imglib2.type.numeric.ComplexType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getImaginaryDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getImaginaryDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getImaginaryFloat() - Method in interface net.imglib2.type.numeric.ComplexType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getImaginaryFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getImaginaryFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getImg() - Method in interface net.imglib2.img.WrappedImg
 
getImg() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder
Deprecated.
 
getImg() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
getImgDimensions() - Method in class net.imglib2.img.cell.CellGrid
Get the number of pixels in each dimension as a new long[].
getIncrement() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
getIncrements() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape
 
getIndex(int[]) - Method in class net.imglib2.img.planar.PlanarImg
For a given ≥2d location, estimate the pixel index in the stack slice.
getIndex() - Method in class net.imglib2.iterator.IntervalIterator
 
getIndex() - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
getIndex() - Method in class net.imglib2.roi.labeling.LabelingType
 
getIndex() - Method in interface net.imglib2.type.NativeType
Deprecated.
Use index().get() instead. If possible, request the index() object only once and re-use it.
getIndexedLabels() - Method in class net.imglib2.roi.labeling.OverlappingLabels
Get the list of labels for this confusion matrix.
getIndexImg() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
getIndexLong() - Method in class net.imglib2.type.AbstractNativeLongAccessType
 
getIndexLong() - Method in interface net.imglib2.type.NativeLongAccessType
Get the current index into the current data array.
getIndexLong() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
getIndexLong() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
getIndexLong() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
getIndexLong() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
getIndexLong() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
getIndexLong() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
getIndexLong() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getIndexLong() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getInPlace() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
getInput() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
getInput() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getInputInterval() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getInsideNodes() - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
getInstance() - Static method in class net.imglib2.realtransform.InversePerspective3D
 
getInstance() - Static method in class net.imglib2.realtransform.Perspective3D
 
getInstance() - Static method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
getInt() - Method in class net.imglib2.type.numeric.integer.GenericIntType
Returns the primitive int value that is used to store this type.
getInteger() - Method in class net.imglib2.type.logic.BitType
 
getInteger() - Method in class net.imglib2.type.logic.BoolType
 
getInteger() - Method in class net.imglib2.type.logic.NativeBoolType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.IntType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.LongType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
Return the lowest 32 bits, like BigInteger.intValue().
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getInteger() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getInteger() - Method in interface net.imglib2.type.numeric.IntegerType
 
getIntegerLong() - Method in class net.imglib2.type.logic.BitType
 
getIntegerLong() - Method in class net.imglib2.type.logic.BoolType
 
getIntegerLong() - Method in class net.imglib2.type.logic.NativeBoolType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.IntType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.LongType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
Return the lowest 64 bits, like BigInteger.intValue().
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getIntegerLong() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getIntegerLong() - Method in interface net.imglib2.type.numeric.IntegerType
 
getIntegerNames(int) - Static method in class net.imglib2.algorithm.labeling.AllConnectedComponents
Deprecated.
Return an iterator that (endlessly) dispenses increasing integer values for labeling components.
getIntercept(long, long) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Method used to convert the {rho, theta} output of the HoughTransforms.voteLines(net.imglib2.RandomAccessibleInterval<T>, net.imglib2.RandomAccessibleInterval<U>) algorithm into a more useful y-intercept value.
getInterpolatorFactory() - Method in class net.imglib2.interpolation.Interpolant
 
getInterval() - Method in interface net.imglib2.algorithm.math.abstractions.SourceInterval
 
getInterval() - Method in class net.imglib2.algorithm.math.ImgSource
 
getInterval() - Method in class net.imglib2.algorithm.math.KDTreeSource
 
getInterval() - Method in class net.imglib2.transform.integer.BoundingBox
 
getIntPosition(int) - Method in class net.imglib2.AbstractCursor
 
getIntPosition(int) - Method in class net.imglib2.AbstractLocalizable
 
getIntPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
 
getIntPosition(int) - Method in class net.imglib2.AbstractWrappedLocalizable
 
getIntPosition(int) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
getIntPosition(int) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
getIntPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
getIntPosition(int) - Method in class net.imglib2.algorithm.region.CircleCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
getIntPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
getIntPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
getIntPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
getIntPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.img.array.AbstractArrayCursor
 
getIntPosition(int) - Method in class net.imglib2.img.list.ListCursor
 
getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor
 
getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor1D
 
getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarCursor2D
 
getIntPosition(int) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Return the current position in a given dimension.
getIntPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
getIntPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
 
getIntPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
getIntPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
getIntPosition(int) - Method in interface net.imglib2.Localizable
Return the current position in a given dimension.
getIntPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
getIntPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
getIntPosition(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
getIntPosition(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.roi.util.OffsetLocalizable
 
getIntPosition(int) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
getIntPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
Return the current position in a given dimension.
getIntPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
getIntPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
getIntPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
getIntPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
getIntPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
getIntPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
getInverseLutCopy() - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
getIoBytes() - Method in class net.imglib2.cache.iotiming.IoStatistics
 
getIoNanoTime() - Method in class net.imglib2.cache.iotiming.IoStatistics
 
getIoStatistics() - Static method in class net.imglib2.cache.iotiming.CacheIoTiming
 
getIoStatistics(ThreadGroup) - Static method in class net.imglib2.cache.iotiming.CacheIoTiming
 
getIoTimeBudget() - Static method in class net.imglib2.cache.iotiming.CacheIoTiming
 
getIoTimeBudget(ThreadGroup) - Static method in class net.imglib2.cache.iotiming.CacheIoTiming
 
getIoTimeBudget() - Method in class net.imglib2.cache.iotiming.IoStatistics
 
getItcode() - Method in interface net.imglib2.roi.util.iterationcode.IterationCode
 
getItcode() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
getIterableIntervalOverROI(RandomAccessible<T>) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
getIterableIntervalOverROI(RandomAccessible<TT>) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
getIterableIntervalOverROI(RandomAccessible<T>) - Method in interface net.imglib2.roi.IterableRegionOfInterest
Deprecated.
Given a sampler in the ROI's space, provide an iterable that can make iterators over the space, sampling pixels from the sampler.
getIterableRegionOfInterest(T) - Method in class net.imglib2.labeling.AbstractLabeling
Deprecated.
 
getIterableRegionOfInterest(T) - Method in interface net.imglib2.labeling.Labeling
Deprecated.
Get a ROI that represents the pixels with the given label
getIterableRegionOfInterest(L) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
getIterator(Interval, Interval, int) - Static method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
getIterator(Interval, int) - Static method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
getK() - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Get the of k nearest neighbor points used in this search
getK() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getK() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getKDTree() - Method in class net.imglib2.algorithm.math.KDTreeSource
 
getKeepDoGImg() - Method in class net.imglib2.algorithm.dog.DogDetection
 
getKeepImgFFT() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
getKernel() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getLabel() - Method in class net.imglib2.roi.labeling.LabelRegion
 
getLabeling() - Method in class net.imglib2.labeling.LabelingType
Deprecated.
Get the labels defined at the type's current pixel or
getLabelingMapping(RandomAccessibleInterval<LabelingType<T>>) - Static method in class net.imglib2.roi.labeling.Labelings
getLabelRegion(T) - Method in class net.imglib2.roi.labeling.LabelRegions
 
getLabels() - Method in class net.imglib2.labeling.AbstractLabeling
Deprecated.
Find all labels in the space
getLabels() - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
getLabels() - Method in interface net.imglib2.labeling.Labeling
Deprecated.
Find all labels in the space
getLabels() - Method in class net.imglib2.labeling.LabelingMapping
Deprecated.
TODO
getLabels() - Method in interface net.imglib2.labeling.LabelingROIStrategy
Deprecated.
Find all of the labels used to label pixels.
getLabels() - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
getLabels() - Method in class net.imglib2.roi.labeling.LabelingMapping
Return the set of all labels defined in this LabelingMapping.
getLabelSets() - Method in class net.imglib2.roi.labeling.LabelingMapping
Returns a snapshot of the LabelingMapping represented as a list of sets.
getLabelSets() - Method in class net.imglib2.roi.labeling.LabelingMapping.SerialisationAccess
Deprecated.
getLargestDimension(Interval) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Convenience method to find largest dimension of Interval interval.
getLastError() - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
getLastSquaredError() - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
getLeafs(Forest<T>) - Static method in class net.imglib2.algorithm.tree.TreeUtils
Find all leaf nodes of a forest.
getLength() - Method in interface net.imglib2.display.ColorTable
Gets the number of elements for each color component in the table.
getLength() - Method in class net.imglib2.display.ColorTable16
 
getLength() - Method in class net.imglib2.display.ColorTable8
 
getLineDimension() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
getLoadingStrategy() - Method in class net.imglib2.cache.volatiles.CacheHints
Get the LoadingStrategy to use when accessing data that is not in the cache yet.
getLong() - Method in class net.imglib2.type.numeric.integer.GenericLongType
Returns the primitive long value that is used to store this type.
getLongPosition(int) - Method in class net.imglib2.AbstractCursorInt
 
getLongPosition(int) - Method in class net.imglib2.AbstractLocalizable
 
getLongPosition(int) - Method in class net.imglib2.AbstractLocalizableInt
 
getLongPosition(int) - Method in class net.imglib2.AbstractWrappedLocalizable
 
getLongPosition(int) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
getLongPosition(int) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
getLongPosition(int) - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
getLongPosition(int) - Method in class net.imglib2.algorithm.math.execution.FunctionCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
getLongPosition(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
getLongPosition(int) - Method in class net.imglib2.algorithm.region.CircleCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
getLongPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
getLongPosition(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
getLongPosition(int) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
getLongPosition(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.img.cell.CellCursor
 
getLongPosition(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
getLongPosition(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
getLongPosition(int) - Method in class net.imglib2.iterator.IntervalIterator
 
getLongPosition(int) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
getLongPosition(int) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
getLongPosition(int) - Method in interface net.imglib2.Localizable
Return the current position in a given dimension.
getLongPosition(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
getLongPosition(int) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
getLongPosition(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
getLongPosition(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
getLongPosition(int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.roi.util.OffsetLocalizable
 
getLongPosition(int) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
getLongPosition(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.iteration.SlicingCursor
Return the current position in a given dimension.
getLongPosition(int) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
getLongPosition(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
getLongPosition(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
getLongPosition(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
getLongPosition(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
getLongPosition(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
getLoopSize() - Method in class net.imglib2.multithreading.Chunk
Deprecated.
 
getLowerBound(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
Gets the data value associated with the left edge of a bin.
getLowerBound(long, T) - Method in class net.imglib2.histogram.Histogram1d
Gets the value associated with the left edge of a bin.
getLowerBound(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
getLowerBound(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
 
getLowerBounds(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
Gets the values associated with the left edge of a bin.
getLUT() - Method in class net.imglib2.converter.RealLUTConverter
 
getLutCopy() - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
getMagnitude() - Method in class net.imglib2.algorithm.edge.Edgel
Get the gradient magnitude at the edgel position.
getMapping() - Method in class net.imglib2.labeling.AbstractNativeLabeling
Deprecated.
 
getMapping() - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
getMapping() - Method in interface net.imglib2.labeling.NativeLabeling
Deprecated.
 
getMapping() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
getMapping() - Method in class net.imglib2.roi.labeling.LabelingType
 
getMatrix() - Method in class net.imglib2.roi.labeling.OverlappingLabels
Get the confusion/co-occurrence matrix.
getMatrix() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getMatrix() - Method in interface net.imglib2.transform.integer.Mixed
Get the matrix that transforms homogeneous source points to homogeneous target points.
getMatrix() - Method in class net.imglib2.transform.integer.MixedTransform
Get the matrix that transforms homogeneous source points to homogeneous target points.
getMatrix() - Method in class net.imglib2.transform.integer.SlicingTransform
Get the matrix that transforms homogeneous source points to homogeneous target points.
getMatrix() - Method in class net.imglib2.transform.integer.TranslationTransform
Get the matrix that transforms homogeneous source points to homogeneous target points.
getMatrix() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getMax() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
getMax() - Method in class net.imglib2.display.AbstractLinearRange
 
getMax() - Method in interface net.imglib2.display.LinearRange
 
getMaxBigIntegerValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
The true maximum value, unlike Unsigned128BitType.getMaxValue() which cannot represent it in a double.
getMaxBigIntegerValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
Returns the true maximum value as a BigInteger, since it cannot be precisely represented as a double.
getMaxBigIntegerValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
Returns the true maximum value as a BigInteger, since it cannot be precisely represented as a double.
getMaxBin() - Method in interface net.imglib2.algorithm.stats.HistogramBinMapper
Returns the maximum bin for the histogram.
getMaxBin() - Method in class net.imglib2.algorithm.stats.IntBinMapper
 
getMaxBin() - Method in class net.imglib2.algorithm.stats.RealBinMapper
 
getMaximaTolerance() - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
getMaxNumMoves() - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
getMaxValue() - Method in class net.imglib2.type.logic.BitType
 
getMaxValue() - Method in class net.imglib2.type.logic.BoolType
 
getMaxValue() - Method in class net.imglib2.type.logic.NativeBoolType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
The maximum value that can be stored is Math.pow(2, nBits) -1.
getMaxValue() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.IntType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.LongType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
The maximum value that can be stored is Math.pow(2, 128) -1, which cannot be represented with precision using a double
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
The maximum value that can be stored is Math.pow( 2, 64 ) - 1, which can't be represented with exact precision using a double
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
The maximum value that can be stored is Math.pow( 2, 64 ) - 1, which can't be represented with exact precision using a double
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getMaxValue() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
The maximum value that can be stored is Math.pow(2, nBits) -1.
getMaxValue() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getMaxValue() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getMaxValue() - Method in class net.imglib2.type.numeric.real.FloatType
 
getMaxValue() - Method in interface net.imglib2.type.numeric.RealType
 
getMaxValue() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getMin() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
getMin() - Method in class net.imglib2.display.AbstractLinearRange
 
getMin() - Method in interface net.imglib2.display.LinearRange
 
getMinBin() - Method in interface net.imglib2.algorithm.stats.HistogramBinMapper
Returns the minimum bin for the histogram.
getMinBin() - Method in class net.imglib2.algorithm.stats.IntBinMapper
 
getMinBin() - Method in class net.imglib2.algorithm.stats.RealBinMapper
 
getMinExtension() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getMinf() - Method in class net.imglib2.algorithm.dog.DogDetection
 
getMinFadeOutDistance() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
getMinIncrement() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getMinIncrement() - Method in class net.imglib2.type.numeric.real.FloatType
 
getMinIncrement() - Method in interface net.imglib2.type.numeric.RealType
 
getMinIncrement() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getMinPeakValue() - Method in class net.imglib2.algorithm.dog.DogDetection
 
getMinValue() - Method in class net.imglib2.type.logic.BitType
 
getMinValue() - Method in class net.imglib2.type.logic.BoolType
 
getMinValue() - Method in class net.imglib2.type.logic.NativeBoolType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.IntType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.LongType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getMinValue() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getMinValue() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getMinValue() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getMinValue() - Method in class net.imglib2.type.numeric.real.FloatType
 
getMinValue() - Method in interface net.imglib2.type.numeric.RealType
 
getMinValue() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getName() - Method in interface net.imglib2.algorithm.math.abstractions.IVar
 
getName() - Method in class net.imglib2.algorithm.math.execution.Variable
 
getName() - Method in class net.imglib2.algorithm.math.Var
 
getNative(int, int) - Method in interface net.imglib2.display.ArrayColorTable
Gets an individual value from the color table.
getNative(int, int) - Method in class net.imglib2.display.ColorTable16
 
getNative(int, int) - Method in class net.imglib2.display.ColorTable8
 
getNativeLongAccessTypeFactory() - Method in interface net.imglib2.type.NativeLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getNativeLongAccessTypeFactory() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getNativeTypeFactory() - Method in class net.imglib2.type.AbstractBitType
 
getNativeTypeFactory() - Method in class net.imglib2.type.label.BasePairBitType
 
getNativeTypeFactory() - Method in class net.imglib2.type.label.BasePairCharType
 
getNativeTypeFactory() - Method in class net.imglib2.type.logic.BitType
 
getNativeTypeFactory() - Method in class net.imglib2.type.logic.NativeBoolType
 
getNativeTypeFactory() - Method in interface net.imglib2.type.NativeType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.ARGBType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.ByteType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.IntType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.LongType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.ShortType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getNativeTypeFactory() - Method in class net.imglib2.type.numeric.real.FloatType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileARGBType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileByteType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileDoubleType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileFloatType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileIntType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileLongType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileShortType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
getNativeTypeFactory() - Method in class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
getNeighborhood(Shape, EuclideanSpace) - Static method in class net.imglib2.algorithm.morphology.MorphologyUtils
 
getNewImageSize() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
getNonTrivialAxes(ImagePlus) - Static method in class net.imglib2.img.display.imagej.CalibrationUtils
 
getNormal() - Method in class net.imglib2.algorithm.kdtree.HyperPlane
 
getNormalizedMatrix() - Method in class net.imglib2.roi.labeling.OverlappingLabels
Get the normalized directional confusion matrix.
getNormalizeMinPeakValue() - Method in class net.imglib2.algorithm.dog.DogDetection
 
getNumBins() - Method in class net.imglib2.algorithm.stats.Histogram
Returns the number of bins in this Histogram.
getNumBins() - Method in interface net.imglib2.algorithm.stats.HistogramBinMapper
Returns the number of bins for the histogram.
getNumBins() - Method in class net.imglib2.algorithm.stats.IntBinMapper
 
getNumBins() - Method in class net.imglib2.algorithm.stats.RealBinMapper
 
getNumerator() - Method in class net.imglib2.util.Fraction
 
getNumPriorities() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
 
getNumThreads() - Method in class net.imglib2.algorithm.dog.DogDetection
 
getNumThreads() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
getNumThreads() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getNumThreads() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getNumThreads() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getNumThreads() - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
getNumThreads() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
getNumThreads() - Method in interface net.imglib2.algorithm.MultiThreaded
The number of threads used by the algorithm
getNumThreads() - Method in class net.imglib2.algorithm.MultiThreadedAlgorithm
 
getNumThreads() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
getOccurringPixelSets(ImgLabeling<T, I>) - Static method in class net.imglib2.roi.labeling.Labelings
Return a Set of occurring pixel values in the ImgLabeling index image.
getOffset() - Method in class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
In this way it is possible to reposition the Positionable from outside without having the need to keep the instance explicitly.
getOffset() - Method in class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
getOffset() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape
 
getOffset() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
getOptimzer() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
getOrCreateAccess(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
getOrigin() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
getOrigin() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
getOrigin(int) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Get a single coordinate of the origin position
getOrigin(RealPositionable) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Get the coordinates of the origin
getOrigin(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
getOrigin(RealPositionable) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Write the position into a RealPositionable
getOrigin(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Write the origin position to this array
getOrigin(int) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Get one component of the origin position
getOriginalOffset() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getOriginalOffset() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getOriginalPeak() - Method in class net.imglib2.algorithm.localextrema.RefinedPeak
 
getOriginalSize() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getOriginalSize() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getOutOfBoundsFactory() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
getOutOfBoundsFactory() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
getOutput() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getOutputContainerFactory() - Method in class net.imglib2.algorithm.transformation.ImageTransform
Deprecated.
getOutputImgFactory() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
getOutputOffset() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getOutsideNodes() - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
getParallelism() - Method in class net.imglib2.parallel.DefaultTaskExecutor
 
getParallelism() - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
getParallelism() - Method in class net.imglib2.parallel.SequentialExecutorService
 
getParallelism() - Method in interface net.imglib2.parallel.TaskExecutor
Get the number of threads that are used for execution.
getParent() - Method in interface net.imglib2.algorithm.componenttree.Component
Get the parent of this node in the ComponentTree.
getParent() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
Get the parent of this node in the MserTree.
getParent() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponent
Get the parent of this node in the PixelListComponentTree.
getParent() - Method in interface net.imglib2.algorithm.tree.TreeNode
Get the parent of this node in the Tree.
getPartialOverlap(T, T) - Method in class net.imglib2.roi.labeling.OverlappingLabels
The fraction of ofLabel that overlaps with overlappingLabel.
getPartialOverlapForIndex(int, int) - Method in class net.imglib2.roi.labeling.OverlappingLabels
The fraction of the label at ofLabelIndex that overlaps with the label at overlappingLabelIndex.
getPeakList() - Method in class net.imglib2.algorithm.math.PickImagePeaks
Returns an ArrayList containing the locations of peaks in the image associated with this peak picker, as calculated by running the process() method.
getPeaks() - Method in class net.imglib2.algorithm.dog.DogDetection
If you want to get subpixel-localized peaks, call DogDetection.getSubpixelPeaks() directly.
getPeaks() - Method in class net.imglib2.algorithm.dog.DogDetection.TypedDogDetection
 
getPhaseDouble() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
getPhaseDouble() - Method in interface net.imglib2.type.numeric.ComplexType
 
getPhaseDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getPhaseDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getPhaseDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getPhaseDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getPhaseFloat() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
getPhaseFloat() - Method in interface net.imglib2.type.numeric.ComplexType
 
getPhaseFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getPhaseFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getPhaseFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getPhaseFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getPhi() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
Return the azimuth of the spherical coordinates of this cursor, with respect to its center.
getPhi() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
getPixelOverlap(T, T) - Method in class net.imglib2.roi.labeling.OverlappingLabels
The number of pixels overlapping between two labels.
getPixelOverlapForIndex(int, int) - Method in class net.imglib2.roi.labeling.OverlappingLabels
The number of pixels overlapping between two labels at the specified indices.
getPixels(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getPixelsZeroBasedIndex(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
This method is used internally by AbstractVirtualStack to implement AbstractVirtualStack.getPixels(int).
getPixelsZeroBasedIndex(int) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
 
getPixelsZeroBasedIndex(int) - Method in class net.imglib2.img.display.imagej.PlanarImgToVirtualStack
 
getPlane(int) - Method in interface net.imglib2.img.basictypeaccess.PlanarAccess
 
getPlane(int) - Method in class net.imglib2.img.planar.PlanarImg
 
getPoint1(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
getPoint1(int) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
getPoint1(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
getPoint1(int) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
getPoint2(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
getPoint2(int) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
getPoint2(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
getPoint2(int) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
getPosition(long, long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.AbstractStridedUnsafeLongAccess
 
getPosition() - Method in class net.imglib2.img.sparse.NtreeCursor
 
getPosition() - Method in interface net.imglib2.img.sparse.NtreeImg.PositionProvider
 
getPosition() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
getPosition(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Access the position of the ith nearest neighbor, ordered by square Euclidean distance.
getPosition(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getPosition() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getPosition(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getPosition() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getPosition() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Access the position of the nearest neighbor, ordered by square Euclidean distance.
getPosition() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
getPosition() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
getPosition(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Access the position of the ith neighbor within radius.
getPosition(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
getPositionable() - Method in class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
In this way it is possible to reposition the Positionable from outside without having the need to keep the instance explicitly.
getPowerDouble() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
getPowerDouble() - Method in interface net.imglib2.type.numeric.ComplexType
 
getPowerDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getPowerDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getPowerDouble() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getPowerDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getPowerFloat() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
getPowerFloat() - Method in interface net.imglib2.type.numeric.ComplexType
 
getPowerFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getPowerFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getPowerFloat() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
getPowerFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getPreConcatenableClass() - Method in interface net.imglib2.concatenate.PreConcatenable
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform2D
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.AffineTransform3D
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.Scale
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.Scale2D
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.Scale3D
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.Translation
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.Translation2D
 
getPreConcatenableClass() - Method in class net.imglib2.realtransform.Translation3D
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.MixedTransform
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.SlicingTransform
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform
 
getPreConcatenableClass() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getPreProcessing() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getPrimitiveType() - Method in class net.imglib2.type.NativeLongAccessTypeFactory
Get the primitive java type that backs the NativeType T.
getPrimitiveType() - Method in class net.imglib2.type.NativeTypeFactory
Get the primitive java type that backs the NativeType T.
getProcessingLine(long) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getProcessingLine(long) - Method in class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
 
getProcessingLine(long) - Method in class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
 
getProcessingLine(long) - Method in class net.imglib2.algorithm.gauss.GaussGeneral
Deprecated.
 
getProcessingLine(long) - Method in class net.imglib2.algorithm.gauss.GaussNativeType
Deprecated.
 
getProcessingTime() - Method in interface net.imglib2.algorithm.Benchmark
 
getProcessingTime() - Method in class net.imglib2.algorithm.BenchmarkAlgorithm
 
getProcessingTime() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
getProcessingTime() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
getProcessingTime() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getProcessingTime() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getProcessingTime() - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
getProcessingTime() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
getProcessingTime() - Method in class net.imglib2.algorithm.math.PickImagePeaks
 
getProcessingTime() - Method in class net.imglib2.algorithm.MultiThreadedBenchmarkAlgorithm
 
getProcessingTime() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
getProcessingTime() - Method in class net.imglib2.algorithm.stats.Histogram
 
getProcessingType() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getProcessLine() - Method in class net.imglib2.algorithm.gauss.SamplingLineIterator
Deprecated.
 
getProcessor(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getQueuePriority() - Method in class net.imglib2.cache.volatiles.CacheHints
Get the priority with which entry requests are enqueued (if they are enqueued).
getR() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
getR() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
getR() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
getRadii(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Get the radius along all of the dimensions
getRadius() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape
 
getRadius() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape
 
getRadius() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape
 
getRadius(int) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Get the ellipse radius along the given dimension
getRandomAccessible() - Method in interface net.imglib2.algorithm.math.abstractions.RandomAccessOnly
 
getRandomAccessible() - Method in class net.imglib2.algorithm.math.BlockReadSource
 
getRandomAccessible() - Method in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
getRandomAccessible() - Method in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
getRandomAccessible() - Method in class net.imglib2.algorithm.math.OffsetSource
 
getRandomAccessible() - Method in class net.imglib2.algorithm.math.RandomAccessibleSource
 
getRandomAccessibleInterval() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
getRandomAccessibleInterval() - Method in class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
getRandomAccessibleInterval() - Method in class net.imglib2.algorithm.math.ImgSource
 
getRange(int) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
The area for the output/temp that needs to be convolved, always relative to the input of the next convolution operation.
getRasterStart(T, long[]) - Method in class net.imglib2.labeling.AbstractLabeling
Deprecated.
Find the first pixel in a raster scan of the object with the given label.
getRasterStart(T, long[]) - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
getRasterStart(T, long[]) - Method in interface net.imglib2.labeling.Labeling
Deprecated.
Find the first pixel in a raster scan of the object with the given label.
getRasterStart(T, long[]) - Method in interface net.imglib2.labeling.LabelingROIStrategy
Deprecated.
The coordinates of the first pixel with the given label when raster scanning through the space.
getRasterStart(L, long[]) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
getRatio() - Method in class net.imglib2.util.Fraction
 
getRealDouble() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
getRealDouble() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getRealDouble() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
getRealDouble() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getRealDouble() - Method in interface net.imglib2.type.numeric.ComplexType
 
getRealDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getRealDouble() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
getRealDouble() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getRealDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getRealDouble() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getRealDouble() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getRealDouble() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getRealDouble() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getRealDouble() - Method in class net.imglib2.type.numeric.real.FloatType
 
getRealDouble() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
Get the minimum and maximum corners of a bounding hypercube using real coordinates (which might have fractional components) The implementer should only override this if the ROI is described in real coordinates.
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
Get the minimum and maximum corners of a bounding hypercube using real coordinates (which might have fractional components)
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
 
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
getRealExtrema(double[], double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
getRealFloat() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
getRealFloat() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
getRealFloat() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
getRealFloat() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
getRealFloat() - Method in interface net.imglib2.type.numeric.ComplexType
 
getRealFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
getRealFloat() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
getRealFloat() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
getRealFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
getRealFloat() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
getRealFloat() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
getRealFloat() - Method in class net.imglib2.type.numeric.real.DoubleType
 
getRealFloat() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
getRealFloat() - Method in class net.imglib2.type.numeric.real.FloatType
 
getRealFloat() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
getRearrangement() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getRearrangement() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getReferenceDimension() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
getRegionOfInterest(T) - Method in class net.imglib2.labeling.AbstractLabeling
Deprecated.
 
getRegionOfInterest(T) - Method in interface net.imglib2.labeling.Labeling
Deprecated.
Get a region of interest optimized to determine point membership
getRegionOfInterest(L) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
getRelativeFadeOutDistance() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getRelativeImageExtension() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getRelativePosition() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
getRequiredBorderSize(Shape, int) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Get the required border size based on the bounding box of the neighborhood specified by shape.
getResampled(int, int, int) - Method in class net.imglib2.display.AbstractArrayColorTable
Gets an individual value from a color table with given number of bins.
getResampled(int, int, int) - Method in interface net.imglib2.display.ColorTable
Gets an individual value from a color table with given number of bins.
getResampled(int, int, int) - Method in class net.imglib2.display.ColorTable16
 
getResampled(int, int, int) - Method in class net.imglib2.display.ColorTable8
 
getResult() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
getResult() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
getResult() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
getResult() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
getResult() - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
getResult() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getResult() - Method in class net.imglib2.algorithm.integral.IntegralImg
 
getResult() - Method in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
getResult() - Method in class net.imglib2.algorithm.labeling.Watershed
 
getResult() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
getResult() - Method in class net.imglib2.algorithm.math.PickImagePeaks
 
getResult() - Method in interface net.imglib2.algorithm.OutputAlgorithm
 
getResult() - Method in class net.imglib2.algorithm.pde.CoherenceEnhancingDiffusionTensor2D
 
getResult() - Method in class net.imglib2.algorithm.pde.Gradient
 
getResult() - Method in class net.imglib2.algorithm.pde.IsotropicDiffusionTensor
 
getResult() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
 
getResult() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
 
getResult() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
getReturnInvalidPeaks() - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
getRoi() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getRoot() - Method in class net.imglib2.KDTree
Get the root node.
getRootNode() - Method in class net.imglib2.img.sparse.Ntree
Returns the root node of the ntree
getRow(int, double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
extract row r of A into vector b.
getRowPackedCopy() - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
getRowPackedCopy() - Method in class net.imglib2.realtransform.AbstractScale
 
getRowPackedCopy() - Method in class net.imglib2.realtransform.AbstractTranslation
 
getRowPackedCopy() - Method in interface net.imglib2.realtransform.AffineGet
Get a copy of the n×(n+1) affine transformation matrix as a row packed array similar to Jama.
getRowPackedCopy() - Method in class net.imglib2.realtransform.AffineTransform2D
 
getRowPackedCopy() - Method in class net.imglib2.realtransform.AffineTransform3D
 
getRowPackedCopy() - Method in class net.imglib2.realtransform.Scale2D
 
getRowPackedCopy() - Method in class net.imglib2.realtransform.Scale3D
 
getRowPackedCopy() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
getRowPackedCopy() - Method in class net.imglib2.realtransform.Translation2D
 
getRowPackedCopy() - Method in class net.imglib2.realtransform.Translation3D
 
getSampler(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Access the data of the ith nearest neighbor, ordered by square Euclidean distance.
getSampler(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getSampler() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getSampler(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getSampler() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getSampler() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Access the data of the nearest neighbor.
getSampler() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
getSampler() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
getSampler(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Access the data of the ith neighbor within radius.
getSampler(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
getScale(int) - Method in class net.imglib2.realtransform.AbstractScale
 
getScale(int) - Method in class net.imglib2.realtransform.AbstractTranslation
 
getScale(int) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
getScale(int) - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet
Get a field of the n-dimensional scale vector.
getScaleCopy() - Method in class net.imglib2.realtransform.AbstractScale
 
getScaleCopy() - Method in class net.imglib2.realtransform.AbstractTranslation
 
getScaleCopy() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
getScaleCopy() - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet
Get a copy of the n-dimensional scale vector.
getScrap() - Method in class net.imglib2.algorithm.math.execution.Variable
 
getScrapValue() - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
getSecond() - Method in class net.imglib2.algorithm.math.abstractions.ABinaryFunction
 
getSecond() - Method in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
getSecond() - Method in interface net.imglib2.algorithm.math.abstractions.IBinaryFunction
 
getSecond() - Method in class net.imglib2.algorithm.math.Let
 
getShear() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
getShear() - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
getShear() - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
getShearDimension() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
getShort() - Method in class net.imglib2.type.numeric.integer.GenericShortType
Returns the primitive short value that is used to store this type.
getShortSliceLabel(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getSigma() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getSize() - Method in class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
getSize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
getSize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
getSize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
getSize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
getSize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
getSize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
getSize() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
getSize() - Method in interface net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccess
 
getSize() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getSize() - Method in interface net.imglib2.roi.util.iterationcode.IterationCode
 
getSize() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
getSliceIndex(double) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
getSliceIndex(double) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
getSliceLabel(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getSliceLabels() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getSliceZeroBasedIndex(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
getSliceZeroBasedIndex(int) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
 
getSlope(long) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Method used to convert the {rho, theta} output of the HoughTransforms.voteLines(net.imglib2.RandomAccessibleInterval<T>, net.imglib2.RandomAccessibleInterval<U>) algorithm into a more useful slope value.
getSource() - Method in class net.imglib2.AbstractWrappedRealInterval
 
getSource(T) - Method in interface net.imglib2.cache.util.KeyBimap
Returns source key source key mapping to a given target key, or null if there is no such source key.
getSource() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
getSource() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
getSource() - Method in class net.imglib2.interpolation.Interpolant
 
getSource() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible
 
getSource() - Method in class net.imglib2.roi.mask.integer.MaskAsRandomAccessible
 
getSource() - Method in class net.imglib2.roi.mask.integer.RandomAccessibleAsMask
 
getSource() - Method in class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
 
getSource() - Method in class net.imglib2.roi.mask.real.RealRandomAccessibleAsRealMask
 
getSource() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
getSource() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
getSource() - Method in class net.imglib2.view.IntervalView
Gets the underlying source RandomAccessible.
getSource() - Method in class net.imglib2.view.MixedTransformView
 
getSource() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
getSource() - Method in class net.imglib2.view.SubsampleView
 
getSource() - Method in interface net.imglib2.view.TransformedRandomAccessible
Get the source of the TransformedRandomAccessible.
getSource() - Method in class net.imglib2.view.TransformView
 
getSourceRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
getSourceSlices() - Method in class net.imglib2.view.StackView
Get the source slices that are stacked in this StackView.
getSpan() - Method in class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
 
getSpan() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
getSpan() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape
 
getSpan() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape
 
getSplitCoordinate() - Method in class net.imglib2.KDTreeNode
Get the position along KDTreeNode.getSplitDimension() where this node divides the space.
getSplitDimension() - Method in class net.imglib2.KDTreeNode
Get the dimension along which this node divides the space.
getSquareDistance(int) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Access the square Euclidean distance between the reference location as used for the last search and the ith nearest neighbor, ordered by square Euclidean distance.
getSquareDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getSquareDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
getSquareDistance(int) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getSquareDistance() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
getSquareDistance() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Access the square Euclidean distance between the reference location as used for the last search and the nearest neighbor, ordered by square Euclidean distance.
getSquareDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
getSquareDistance() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
getSquareDistance(int) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Access the square Euclidean distance between the reference location as used for the last search and the ith neighbor.
getSquareDistance(int) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
getSrcInterval() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
getStackAccessMode() - Method in class net.imglib2.view.StackView
 
getStartPosition() - Method in class net.imglib2.multithreading.Chunk
Deprecated.
 
getSteps() - Method in class net.imglib2.view.SubsampleView
 
getStorageArray() - Method in class net.imglib2.cache.img.SingleCellArrayImg
Get the single primitive array containing the data of this cell.
getStorageImg() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
getStructuringElement(int) - Static method in class net.imglib2.algorithm.labeling.AllConnectedComponents
Deprecated.
Return an array of offsets to the 8-connected (or N-d equivalent) structuring element for the dimension space.
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
 
getStructuringElementBoundingBox() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondShape
 
getStructuringElementBoundingBox() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape
 
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
getStructuringElementBoundingBox() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
getStructuringElementBoundingBox() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape
 
getStructuringElementBoundingBox() - Method in interface net.imglib2.algorithm.neighborhood.Neighborhood
 
getStructuringElementBoundingBox() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape
 
getStructuringElementBoundingBox() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape
 
getStructuringElementBoundingBox() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
getStructuringElementBoundingBox() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
getStructuringElementBoundingBox(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleShape
 
getStructuringElementBoundingBox(int) - Method in interface net.imglib2.algorithm.neighborhood.Shape
Get the bounding box for a Shape with numDimensions dimensions.
getSubpixelPeaks() - Method in class net.imglib2.algorithm.dog.DogDetection
 
getSubpixelPeaks() - Method in class net.imglib2.algorithm.dog.DogDetection.TypedDogDetection
 
getSuggestedKernelDiameter(double) - Static method in class net.imglib2.util.Util
 
getSuitableImgFactory(Dimensions, T) - Static method in class net.imglib2.util.Util
Create an appropriate ImgFactory for the requested targetSize and type.
getSum() - Method in class net.imglib2.util.RealSum
Get the current sum by summing up all intermediate sums.
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
The index to the table that's returned is built by examining each pixel and accumulating 2^pixel number.
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Bridge
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Clean
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Endpoints
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Fill
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Hbreak
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Life
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Majority
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Remove
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Thicken
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Thin1
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Thin2
 
getTable() - Method in class net.imglib2.algorithm.morphology.table2d.Vbreak
 
getTarget(S) - Method in interface net.imglib2.cache.util.KeyBimap
Returns target key for a given source key.
getTaskExecutor() - Static method in class net.imglib2.parallel.Parallelization
Returns the TaskExecutor that was set for this thread.
getTemporaryImgSize() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getTheta() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
getThird() - Method in class net.imglib2.algorithm.math.abstractions.ATrinaryFunction
 
getThird() - Method in interface net.imglib2.algorithm.math.abstractions.ITrinaryFunction
 
getTmp1() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getTmp2() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
getTransform() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
getTransformToSource() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible
 
getTransformToSource() - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
 
getTransformToSource() - Method in class net.imglib2.view.MixedTransformView
 
getTransformToSource() - Method in interface net.imglib2.view.TransformedRandomAccessible
Get the transformation from view coordinates into source coordinates.
getTransformToSource() - Method in class net.imglib2.view.TransformView
 
getTranslation(int) - Method in class net.imglib2.realtransform.AbstractScale
 
getTranslation(int) - Method in class net.imglib2.realtransform.AbstractTranslation
 
getTranslation() - Method in class net.imglib2.realtransform.AffineTransform3D
Initialize the translation with a given vector
getTranslation(int) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
getTranslation(int) - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet
Get a field of the n-dimensionsional translation vector.
getTranslation(long[]) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getTranslation(int) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
getTranslation(long[]) - Method in interface net.imglib2.transform.integer.Mixed
Get the translation.
getTranslation(int) - Method in interface net.imglib2.transform.integer.Mixed
Get the d-th component of translation (see Mixed.getTranslation(long[])).
getTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
getTranslation(int) - Method in class net.imglib2.transform.integer.MixedTransform
 
getTranslation(long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getTranslation(int) - Method in class net.imglib2.transform.integer.SlicingTransform
 
getTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
getTranslation(int) - Method in class net.imglib2.transform.integer.TranslationTransform
 
getTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getTranslation(int) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
getTranslationCopy() - Method in class net.imglib2.realtransform.AbstractScale
 
getTranslationCopy() - Method in class net.imglib2.realtransform.AbstractTranslation
 
getTranslationCopy() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
getTranslationCopy() - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet
Get a copy of the n-dimensionsional translation vector.
getType() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
getType() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
getType() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
getType() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
getType() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
getType() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
getType() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
getType() - Method in interface net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccess
 
getTypeFromInterval(F) - Static method in class net.imglib2.util.Util
Gets an instance of T from the RandomAccessibleInterval by querying the value at the min coordinate
getTypeFromRealInterval(F) - Static method in class net.imglib2.util.Util
Gets an instance of T from the RandomAccessibleInterval by querying the value at the min coordinate
getUnsignedByte(byte) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
getUnsignedByte(byte) - Static method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
getUnsignedInt(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
getUnsignedInt(int) - Static method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
getUnsignedShort(short) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
getUnsignedShort(short) - Static method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
getUpperBound(long, T) - Method in interface net.imglib2.histogram.BinMapper1d
Gets the data value associated with the right edge of a bin.
getUpperBound(long, T) - Method in class net.imglib2.histogram.Histogram1d
Gets the value associated with the right edge of the bin.
getUpperBound(long, T) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
getUpperBound(long, T) - Method in class net.imglib2.histogram.Real1dBinMapper
 
getUpperBounds(long[], List<T>) - Method in class net.imglib2.histogram.HistogramNd
Gets the values associated with the right edge of a bin.
getValue() - Method in interface net.imglib2.algorithm.componenttree.PartialComponent
Get the threshold value (e.g., grey-level) for this component.
getValue() - Method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussCalculator
 
getValue() - Method in class net.imglib2.algorithm.localextrema.RefinedPeak
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.ComplexDoubleLongAccessTypeComplexDoubleTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.ComplexFloatLongAccessTypeComplexFloatTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.DoubleLongAccessTypeDoubleTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.FloatLongAccessTypeFloatTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.IntLongAccessTypeIntTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.LongLongAccessTypeLongTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.ShortLongAccessTypeShortTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedByteLongAccessTypeUnsignedByteTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedIntLongAccessTypeUnsignedIntTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedLongLongAccessTypeUnsignedLongTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedShortLongAccessTypeUnsignedShortTypeConverter.ConvertedAccess
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
getValue(int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.BooleanAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.ByteAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.CharAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.DoubleAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.FloatAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.IntAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.LongAccess
 
getValue(int) - Method in interface net.imglib2.img.basictypeaccess.ShortAccess
 
getValue(long) - Method in interface net.imglib2.img.basictypelongaccess.ByteLongAccess
 
getValue(long) - Method in interface net.imglib2.img.basictypelongaccess.CharLongAccess
 
getValue(long) - Method in interface net.imglib2.img.basictypelongaccess.DoubleLongAccess
 
getValue(long) - Method in interface net.imglib2.img.basictypelongaccess.FloatLongAccess
 
getValue(long) - Method in interface net.imglib2.img.basictypelongaccess.IntLongAccess
 
getValue(long) - Method in interface net.imglib2.img.basictypelongaccess.LongLongAccess
 
getValue(long) - Method in interface net.imglib2.img.basictypelongaccess.ShortLongAccess
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedByteLongAccess
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedByteLongAccess
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedCharLongAccess
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedCharLongAccess
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedDoubleLongAccess
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedDoubleLongAccess
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedFloatLongAccess
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedFloatLongAccess
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedIntLongAccess
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedIntLongAccess
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedLongLongAccess
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedLongLongAccess
 
getValue(long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedShortLongAccess
 
getValue(int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedShortLongAccess
 
getValue(int) - Method in class net.imglib2.img.io.proxyaccess.ByteAccessProxy
 
getValue(int) - Method in class net.imglib2.img.io.proxyaccess.FloatAccessProxy
 
getValue(int) - Method in class net.imglib2.img.io.proxyaccess.IntAccessProxy
 
getValue(int) - Method in class net.imglib2.img.io.proxyaccess.LongAccessProxy
 
getValue(int) - Method in class net.imglib2.img.io.proxyaccess.ShortAccessProxy
 
getValue(int) - Method in class net.imglib2.img.sparse.BooleanNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.ByteNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.CharNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.DoubleNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.FloatNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.IntNtree
 
getValue(int) - Method in class net.imglib2.img.sparse.LongNtree
 
getValue() - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
 
getValue(int) - Method in class net.imglib2.img.sparse.ShortNtree
 
getValue() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
getValue() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
getValue() - Method in class net.imglib2.type.numeric.integer.GenericByteType
Deprecated.
getValue() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
getValue() - Method in class net.imglib2.type.numeric.integer.GenericIntType
Deprecated.
getValue() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
getValue() - Method in class net.imglib2.type.numeric.integer.GenericLongType
Deprecated.
getValue() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
getValue() - Method in class net.imglib2.type.numeric.integer.GenericShortType
Deprecated.
getValues() - Method in class net.imglib2.display.AbstractArrayColorTable
 
getValues() - Method in interface net.imglib2.display.ArrayColorTable
Gets a copy of the entire color table.
getVarName() - Method in class net.imglib2.algorithm.math.execution.LetBinding
 
getVarName() - Method in class net.imglib2.algorithm.math.Let
 
getVertex(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Get a vertex by index
getVertexCount() - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
getVotespaceSize(Dimensions) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Returns the size of the vote space output image given an input RandomAccessibleInterval.
getVotespaceSize(Dimensions, int) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Returns the size of the vote space output image given an input RandomAccessibleInterval.
getVotespaceSize(int, int) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Returns the size of the voteSpace output image given desired nRho and nTheta values.
getVoxels(int, int, int, int, int, int, float[]) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getVoxels(int, int, int, int, int, int, float[], int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getWeight(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
getWidth() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
getWidth() - Method in class net.imglib2.img.imageplus.ImagePlusImg
 
getXYCircleBounds(int, int[]) - Static method in class net.imglib2.algorithm.region.localneighborhood.Utils
Midpoint circle algorithm: store the bounds of a circle in the given array.
getXYEllipseBounds(int, int, int[]) - Static method in class net.imglib2.algorithm.region.localneighborhood.Utils
Store the half-widths of a X line to scan to fill an ellipse of given axis lengths.
getZeroPaddingSize(int[], FourierTransform.FFTOptimization) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
globalPositionToIndex(long[]) - Method in class net.imglib2.img.cell.Cell
Compute the index in the underlying flat array of this cell which corresponds to the specified global position.
gLog(double, double) - Static method in class net.imglib2.util.Util
 
gLog(float, float) - Static method in class net.imglib2.util.Util
 
gLogInv(double, double) - Static method in class net.imglib2.util.Util
 
gLogInv(float, float) - Static method in class net.imglib2.util.Util
 
grad(double[], double[], int) - Method in class net.imglib2.algorithm.localization.EllipticGaussianOrtho
Returns the gradient value of this function, with respect to the variable specified by its index: Partial derivatives indices are ordered as follow:
grad(double[], double[], int) - Method in interface net.imglib2.algorithm.localization.FitFunction
Evaluates the gradient value of the function, taken with respect to the akth parameter, evaluated at point x.
grad(double[], double[], int) - Method in class net.imglib2.algorithm.localization.Gaussian
Partial derivatives indices are ordered as follow:
Gradient<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
Gradient(Img<T>, boolean[]) - Constructor for class net.imglib2.algorithm.pde.Gradient
Deprecated.
Use Gradient(RandomAccessibleInterval, ImgFactory, boolean[]) instead and define a imgFactory for the output.
Gradient(RandomAccessibleInterval<T>, ImgFactory<FloatType>, boolean[]) - Constructor for class net.imglib2.algorithm.pde.Gradient
 
gradientBackwardDifference(RandomAccessible<T>, RandomAccessibleInterval<T>, int) - Static method in class net.imglib2.algorithm.gradient.PartialDerivative
Compute the backward difference of source in a particular dimension: d_f( x ) = ( f( x ) - f( x - e ) ) where e is the unit vector along that dimension
gradientCentralDifference(RandomAccessible<T>, RandomAccessibleInterval<T>, int) - Static method in class net.imglib2.algorithm.gradient.PartialDerivative
Compute the partial derivative (central difference approximation) of source in a particular dimension: d_f( x ) = ( f( x + e ) - f( x - e ) ) / 2, where e is the unit vector along that dimension.
gradientCentralDifference2(RandomAccessible<T>, RandomAccessibleInterval<T>, int) - Static method in class net.imglib2.algorithm.gradient.PartialDerivative
Compute the partial derivative (central difference approximation) of source in a particular dimension: d_f( x ) = ( f( x + e ) - f( x - e ) ) / 2, where e is the unit vector along that dimension.
gradientCentralDifferenceParallel(RandomAccessible<T>, RandomAccessibleInterval<T>, int, int, ExecutorService) - Static method in class net.imglib2.algorithm.gradient.PartialDerivative
Compute the partial derivative (central difference approximation) of source in a particular dimension: d_f( x ) = ( f( x + e ) - f( x - e ) ) / 2, where e is the unit vector along that dimension.
gradientForwardDifference(RandomAccessible<T>, RandomAccessibleInterval<T>, int) - Static method in class net.imglib2.algorithm.gradient.PartialDerivative
Compute the forward difference of source in a particular dimension: d_f( x ) = ( f( x + e ) - f( x ) ) where e is the unit vector along that dimension
GreaterThan - Class in net.imglib2.algorithm.math
 
GreaterThan(Object, Object) - Constructor for class net.imglib2.algorithm.math.GreaterThan
 
greaterThan(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
GREEN - Static variable in interface net.imglib2.display.ColorTable
 
green(int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
green(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
grid - Variable in class net.imglib2.img.cell.AbstractCellImg
 
grid - Variable in class net.imglib2.img.cell.CellRandomAccess
 
gridDimension(int) - Method in class net.imglib2.img.cell.CellGrid
 
gridDimensions(long[]) - Method in class net.imglib2.img.cell.CellGrid
 
Grids - Class in net.imglib2.algorithm.util
 
Grids() - Constructor for class net.imglib2.algorithm.util.Grids
 
Grids.CreateAndCropBlockToFitInterval - Class in net.imglib2.algorithm.util
 
Grids.GetForDimension - Interface in net.imglib2.algorithm.util
Helper interface to get current value of specified dimension
Grids.GetGridCoordinates - Class in net.imglib2.algorithm.util
 
Grids.MoveForDimension - Interface in net.imglib2.algorithm.util
Helper interface for moving by a specified distance along a specified dimension.
Grids.SetForDimension - Interface in net.imglib2.algorithm.util
Helper interface to set position of specified dimension.
GT(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
GuardedStrongRefLoaderCache<K,V> - Class in net.imglib2.cache.ref
A LoaderCache that is backed by a cache with strong references to values.
GuardedStrongRefLoaderCache(long) - Constructor for class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
GuardedStrongRefLoaderRemoverCache<K,V,D> - Class in net.imglib2.cache.ref
A LoaderRemoverCache that is backed by a cache with strong references to values.
GuardedStrongRefLoaderRemoverCache(long) - Constructor for class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 

H

halfkernel(double, int, boolean) - Static method in class net.imglib2.algorithm.gauss3.Gauss3
Returns a gaussian half kernel with the given sigma and size.
halfkernels(double[]) - Static method in class net.imglib2.algorithm.gauss3.Gauss3
 
halfkernelsizes(double[]) - Static method in class net.imglib2.algorithm.gauss3.Gauss3
 
halfToFullKernel(double[]) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
 
hasFullSourceMapping() - Method in class net.imglib2.transform.integer.MixedTransform
Check whether the transforms has a full mapping of source to target components (no source component is discarded).
hasFullSourceMapping() - Method in class net.imglib2.transform.integer.SlicingTransform
Check whether the transforms has a full mapping of source to target components (no source component is discarded).
hashCode() - Method in class net.imglib2.cache.volatiles.CacheHints
 
hashCode() - Method in class net.imglib2.FinalDimensions
 
hashCode() - Method in class net.imglib2.FinalInterval
 
hashCode() - Method in class net.imglib2.FinalRealInterval
 
hashCode() - Method in class net.imglib2.img.cell.CellGrid
 
hashCode() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
hashCode() - Method in class net.imglib2.Point
 
hashCode() - Method in class net.imglib2.RealPoint
 
hashCode() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
hashCode() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
hashCode() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
hashCode() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
hashCode() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
hashCode() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
hashCode() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
hashCode() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
hashCode() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
hashCode() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
hashCode() - Method in class net.imglib2.roi.geom.integer.IterableLine
 
hashCode() - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
 
hashCode() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
hashCode() - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
hashCode(Box) - Static method in interface net.imglib2.roi.geom.real.Box
Computes a hash code for a box.
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritableLine
 
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritablePointMask
 
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
 
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
hashCode() - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
 
hashCode(Line) - Static method in interface net.imglib2.roi.geom.real.Line
Computes a hash code for a line.
hashCode() - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
hashCode(PointMask) - Static method in interface net.imglib2.roi.geom.real.PointMask
Computes a hash code for a point.
hashCode(Polygon2D) - Static method in interface net.imglib2.roi.geom.real.Polygon2D
Computes a hash code for a polygon.
hashCode(Polyline) - Static method in interface net.imglib2.roi.geom.real.Polyline
Computes a hash code for a polyline.
hashCode(RealPointCollection<?>) - Static method in interface net.imglib2.roi.geom.real.RealPointCollection
Computes a hash code for a point collection.
hashCode(SuperEllipsoid) - Static method in interface net.imglib2.roi.geom.real.SuperEllipsoid
Computes a hash code for a superellipsoid.
hashCode() - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
 
hashCode() - Method in class net.imglib2.roi.labeling.LabelingType
 
hashCode() - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
 
hashCode() - Method in class net.imglib2.type.logic.BitType
 
hashCode() - Method in class net.imglib2.type.logic.BoolType
 
hashCode() - Method in class net.imglib2.type.logic.NativeBoolType
 
hashCode() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
hashCode() - Method in class net.imglib2.type.numeric.ARGBType
 
hashCode() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
hashCode() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
hashCode() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
hashCode() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
hashCode() - Method in class net.imglib2.type.numeric.real.FloatType
 
hashCode() - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
hashCode() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
hashCode() - Method in class net.imglib2.util.ValuePair
 
hasIntersectingLabels(ImgLabeling<T, I>) - Static method in class net.imglib2.roi.labeling.Labelings
Check if the image labeling img has intersecting labels.
hasNext() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList.PixelListIterator
 
hasNext() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
hasNext() - Method in class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
 
hasNext() - Method in class net.imglib2.algorithm.math.execution.FunctionCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
hasNext() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
hasNext() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
hasNext() - Method in class net.imglib2.algorithm.region.CircleCursor
 
hasNext() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
hasNext() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
hasNext() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
hasNext - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
hasNext() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
hasNext() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
hasNext() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
hasNext() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
hasNext() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
hasNext() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
hasNext() - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
hasNext() - Method in class net.imglib2.converter.read.BiConvertedCursor
The correct logic would be to return sourceA.hasNext() && sourceB.hasNext() but we test only sourceA for efficiency.
hasNext() - Method in class net.imglib2.converter.read.BiConvertedRealCursor
The correct logic would be to return sourceA.hasNext() && sourceB.hasNext() but we test only sourceA for efficiency.
hasNext() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
hasNext() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
hasNext() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
hasNext() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
hasNext() - Method in class net.imglib2.img.cell.CellCursor
 
hasNext() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
hasNext() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
hasNext() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
hasNext() - Method in class net.imglib2.img.list.ListCursor
 
hasNext() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
hasNext() - Method in class net.imglib2.img.planar.PlanarCursor
Note: This test is fragile in a sense that it returns true for elements after the last element as well.
hasNext() - Method in class net.imglib2.img.planar.PlanarCursor1D
 
hasNext() - Method in class net.imglib2.img.planar.PlanarCursor2D
 
hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
Note: This test is fragile in a sense that it returns true for elements after the last element as well.
hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
hasNext() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
hasNext() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
hasNext() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
hasNext() - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
hasNext() - Method in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
hasNext() - Method in interface net.imglib2.Iterator
Returns true if another step forward is possible.
hasNext() - Method in class net.imglib2.iterator.IntervalIterator
 
hasNext() - Method in class net.imglib2.KDTree.KDTreeCursor
 
hasNext() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
hasNext() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
hasNext() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
hasNext() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
hasNext() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
hasNext() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeIterator
 
hasNext() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
hasNext() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
 
hasNext() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
hasNext() - Method in class net.imglib2.view.iteration.SlicingCursor
Returns true if another step forward is possible.
hasNext() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
hasTails() - Method in interface net.imglib2.histogram.BinMapper1d
Returns true if this bin mapping has bins on the ends of the distribution that count out of bounds values.
hasTails() - Method in class net.imglib2.histogram.Histogram1d
Returns true if the histogram has tail bins at both ends which count extreme values.
hasTails(int) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the histogram has tail bins which count extreme values for the given dimension.
hasTails() - Method in class net.imglib2.histogram.HistogramNd
Returns true if the histogram has tail bins which count extreme values for one or more dimensions
hasTails() - Method in class net.imglib2.histogram.Integer1dBinMapper
 
hasTails() - Method in class net.imglib2.histogram.Real1dBinMapper
 
Hbreak - Class in net.imglib2.algorithm.morphology.table2d
Removes pixels that form vertical bridges between horizontal lines.
Hbreak() - Constructor for class net.imglib2.algorithm.morphology.table2d.Hbreak
 
hbreak(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Hbreak
 
hbreak(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Hbreak
 
height - Variable in class net.imglib2.img.imageplus.ImagePlusImg
 
hessian(double[], double[], int, int) - Method in class net.imglib2.algorithm.localization.EllipticGaussianOrtho
Returns the hessian value of this function, with respect to the variable specified by its index: Partial derivatives indices are ordered as follow:
hessian(double[], double[], int, int) - Method in interface net.imglib2.algorithm.localization.FitFunction
Evaluates the hessian value of the function, taken with respect to the rth and cth parameters, evaluated at point x.
hessian(double[], double[], int, int) - Method in class net.imglib2.algorithm.localization.Gaussian
 
HessianMatrix - Class in net.imglib2.algorithm.gradient
Compute entries of n-dimensional Hessian matrix.
HessianMatrix() - Constructor for class net.imglib2.algorithm.gradient.HessianMatrix
 
hierarchy(IFunction) - Static method in class net.imglib2.algorithm.math.abstractions.Util
Generate a printable, indented String with the nested hierarchy of operations under IFunction f.
hierarchy(OFunction<?>) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
Histogram<T> - Class in net.imglib2.algorithm.stats
Implements a Histogram over an Image.
Histogram(HistogramBinMapper<T>, RealCursor<T>) - Constructor for class net.imglib2.algorithm.stats.Histogram
Create a Histogram using the given mapper, calculating from the given Cursor.
Histogram(HistogramBinMapper<T>, Img<T>) - Constructor for class net.imglib2.algorithm.stats.Histogram
Create a Histogram using the given mapper, calculating from the given Image.
Histogram1d<T> - Class in net.imglib2.histogram
A Histogram1d is a histogram that tracks up to four kinds of values: 1) values in the center of the distribution 2) values to the left of the center of the distribution (lower tail) 3) values to the right of the center of the distribution (upper tail) 4) values outside the other areas
Histogram1d(BinMapper1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
Construct a histogram from a bin mapping algorithm.
Histogram1d(Histogram1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
Construct a histogram whose bin mappings match another histogram.
Histogram1d(Iterable<T>, BinMapper1d<T>) - Constructor for class net.imglib2.histogram.Histogram1d
Construct a histogram from an iterable set of data and a bin mapping algorithm.
HistogramBinMapper<T> - Interface in net.imglib2.algorithm.stats
An interface used by the Histogram class to map Type objects to histogram bins.
HistogramNd<T> - Class in net.imglib2.histogram
A HistogramNd is an n-dimensional histogram that tracks up to four kinds of values: 1) values in the center of the distribution 2) values to the left of the center of the distribution (lower tail) 3) values to the right of the center of the distribution (upper tail) 4) values outside the other areas
HistogramNd(List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
Construct a histogram from a list of bin mapping algorithms.
HistogramNd(HistogramNd<T>) - Constructor for class net.imglib2.histogram.HistogramNd
Construct a histogram whose bin mappings match another histogram.
HistogramNd(Iterable<List<T>>, List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
Construct a histogram from an iterable set of data and a list of bin mapping algorithms.
HistogramNd(List<Iterable<T>>, List<BinMapper1d<T>>) - Constructor for class net.imglib2.histogram.HistogramNd
Construct a histogram from an iterable set of data and a list of bin mapping algorithms.
histogramNd(long[], long[], boolean[]) - Static method in class net.imglib2.histogram.Integer1dBinMapper
This is a convenience method for creating a HistogramNd from inputs that describe a set of integer 1-d based bin mappers.
histogramNd(double[], double[], long[], boolean[]) - Static method in class net.imglib2.histogram.Real1dBinMapper
This is a convenience method for creating a HistogramNd from inputs that describe a set of real 1-d based bin mappers.
HomographyTransform2D - Class in net.imglib2.realtransform
2D-homography RealTransform to be applied to points in 2D-space.
HomographyTransform2D() - Constructor for class net.imglib2.realtransform.HomographyTransform2D
 
HorizontalLineNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
 
HorizontalLineNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
HorizontalLineNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
HorizontalLineNeighborhoodCursor(RandomAccessibleInterval<T>, long, int, boolean, HorizontalLineNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
HorizontalLineNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
 
HorizontalLineNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
HorizontalLineNeighborhoodLocalizableSampler(RandomAccessible<T>, long, int, boolean, HorizontalLineNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
HorizontalLineNeighborhoodLocalizableSampler(HorizontalLineNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
HorizontalLineNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
HorizontalLineNeighborhoodRandomAccess(RandomAccessible<T>, long, int, boolean, HorizontalLineNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
HorizontalLineNeighborhoodRandomAccess(RandomAccessible<T>, long, int, boolean, HorizontalLineNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
HorizontalLineNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
HorizontalLineShape - Class in net.imglib2.algorithm.neighborhood
A Shape representing finite, centered, symmetric lines, that are parallel to the image axes.
HorizontalLineShape(long, int, boolean) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineShape
Create a new line shape.
HorizontalLineShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
HorizontalLineShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 
HoughTransforms<T extends RealType<T> & Comparable<T>> - Class in net.imglib2.algorithm.hough
This class provides static methods used to detect imperfect shapes in two-dimensional images through the use of the Hough Transform.
HoughTransforms() - Constructor for class net.imglib2.algorithm.hough.HoughTransforms
 
HyperPlane - Class in net.imglib2.algorithm.kdtree
 
HyperPlane(double[], double) - Constructor for class net.imglib2.algorithm.kdtree.HyperPlane
 
HyperPlane(double...) - Constructor for class net.imglib2.algorithm.kdtree.HyperPlane
 
hyperSlice(ImgPlus<T>, int, long) - Static method in class net.imglib2.img.display.imagej.ImgPlusViews
hyperSlice(Interval, int) - Static method in class net.imglib2.util.Intervals
Take a (n-1)-dimensional slice of a n-dimensional interval, dropping the d axis.
HyperSlice<T> - Class in net.imglib2.view
 
HyperSlice(RandomAccessible<T>, int[], long[]) - Constructor for class net.imglib2.view.HyperSlice
Create a new HyperSlice at a position.
hyperSlice(RandomAccessible<T>, int, long) - Static method in class net.imglib2.view.Views
take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos.
hyperSlice(RandomAccessibleInterval<T>, int, long) - Static method in class net.imglib2.view.Views
take a (n-1)-dimensional slice of a n-dimensional view, fixing d-component of coordinates to pos.
hyperSlice(int, int, long) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.hyperSlice(RandomAccessible, int, long).
HyperSlice.HyperSliceRandomAccess - Class in net.imglib2.view
 
HyperSliceRandomAccess() - Constructor for class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
HyperSliceRandomAccess(Interval) - Constructor for class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
hyperSlices(RandomAccessible<T>, int...) - Static method in class net.imglib2.view.Views
Provide an (n + m)-dimensional RandomAccessible of T as an m-dimensional RandomAccessible of n-dimensional RandomAccessibles of T.
HyperSlicesView<T> - Class in net.imglib2.view
HyperSlicesView(RandomAccessible<T>, int...) - Constructor for class net.imglib2.view.HyperSlicesView
 
HyperSlicesView.HyperSlicesViewRandomAccess - Class in net.imglib2.view
 
HyperSlicesViewRandomAccess() - Constructor for class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
HyperSphere<T> - Class in net.imglib2.algorithm.region.hypersphere
TODO
HyperSphere(RandomAccessible<T>, Localizable, long) - Constructor for class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
HyperSphereCursor<T> - Class in net.imglib2.algorithm.region.hypersphere
Iterate over all pixels in an n-dimensional sphere.
HyperSphereCursor(RandomAccessible<T>, long[], long) - Constructor for class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
HyperSphereCursor(HyperSphereCursor<T>) - Constructor for class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
HyperSphereNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
TODO
HyperSphereNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
HyperSphereNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
HyperSphereNeighborhoodCursor(RandomAccessibleInterval<T>, long, HyperSphereNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
HyperSphereNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
INCOMPLETE !!! TODO
HyperSphereNeighborhoodGPL<T> - Class in net.imglib2.algorithm.region.localneighborhood
Deprecated.
HyperSphereNeighborhoodGPL(RandomAccessibleInterval<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long) - Constructor for class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
HyperSphereNeighborhoodGPL(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long) - Constructor for class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
HypersphereNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
HypersphereNeighborhoodLocalizableSampler(RandomAccessible<T>, long, HyperSphereNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
HypersphereNeighborhoodLocalizableSampler(HypersphereNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
HyperSphereNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
HyperSphereNeighborhoodRandomAccess(RandomAccessible<T>, long, HyperSphereNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
HyperSphereNeighborhoodRandomAccess(RandomAccessible<T>, long, HyperSphereNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
HyperSphereNeighborhoodRandomAccess(HyperSphereNeighborhoodRandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
HyperSphereNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
HyperSphereShape - Class in net.imglib2.algorithm.neighborhood
A factory for Accessibles on hyper-sphere neighboorhoods.
HyperSphereShape(long) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereShape
 
HyperSphereShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
HyperSphereShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 

I

I - Variable in class net.imglib2.algorithm.localization.Observation
 
i - Variable in class net.imglib2.converter.CompositeChannelConverter
 
i - Variable in class net.imglib2.img.cell.CellCursor
 
i - Variable in class net.imglib2.type.AbstractBitType
 
i - Variable in class net.imglib2.type.AbstractNativeLongAccessType
 
i - Variable in class net.imglib2.type.AbstractNativeType
 
i - Variable in class net.imglib2.type.logic.BitType
 
i00 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
i01 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
i02 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
i10 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
i11 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
i12 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
i20 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
i21 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
i22 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
IBinaryFunction - Interface in net.imglib2.algorithm.math.abstractions
 
IBooleanFunction - Interface in net.imglib2.algorithm.math.abstractions
 
identity() - Method in class net.imglib2.realtransform.AffineTransform3D
Set to identity transform
idFromIntervalIndexer(Interval) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponentAnalysis
 
If - Class in net.imglib2.algorithm.math
 
If(Object, Object, Object) - Constructor for class net.imglib2.algorithm.math.If
 
IF(Object, Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
IfStatement<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
IfStatement(OFunction<O>, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.IfStatement
 
IfStatementBoolean<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
IfStatementBoolean(ABooleanFunction<O>, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.IfStatementBoolean
 
IFunction - Interface in net.imglib2.algorithm.math.abstractions
 
ignoredCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of values that were ignored because they could not be mapped to any bin.
ignoredCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values that were ignored because they could not be mapped to any bin.
IImgSourceIterable<I> - Interface in net.imglib2.algorithm.math.abstractions
 
IJLoader<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.img.io
An ImageJ-powered implementation of a disk-based CacheLoader: the file system is the cache, and requests to load image file paths are executed using ImageJ's IJ.openImage(java.lang.String), and wrapped as PlanarImg via the ImageJFunctions.wrap(ij.ImagePlus).
IJLoader() - Constructor for class net.imglib2.img.io.IJLoader
 
image - Variable in class net.imglib2.algorithm.labeling.Watershed
 
image - Variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
image() - Method in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
image() - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
image() - Method in interface net.imglib2.display.screenimage.awt.AWTScreenImage
 
image() - Method in interface net.imglib2.display.screenimage.ScreenImage
 
ImageJFunctions - Class in net.imglib2.img.display.imagej
Provides static convenience methods to facilitate interacting with ImageJ 1.x.
ImageJFunctions() - Constructor for class net.imglib2.img.display.imagej.ImageJFunctions
 
ImageJVirtualStack<T extends NativeType<T>> - Class in net.imglib2.img.display.imagej
VirtualStack that wraps around a RandomAccessibleInterval of type UnsignedByteType, UnsignedShortType, FloatType or ARGBType.
ImageJVirtualStack(RandomAccessibleInterval<S>, Converter<? super S, T>, T, int) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStack
 
ImageJVirtualStack(RandomAccessibleInterval<S>, Converter<? super S, T>, T, int, ExecutorService) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStack
 
ImageJVirtualStack(RandomAccessibleInterval<T>, int) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStack
 
ImageJVirtualStackARGB - Class in net.imglib2.img.display.imagej
TODO
ImageJVirtualStackARGB(RandomAccessibleInterval<S>, Converter<? super S, ARGBType>) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStackARGB
 
ImageJVirtualStackARGB(RandomAccessibleInterval<S>, Converter<? super S, ARGBType>, ExecutorService) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStackARGB
 
ImageJVirtualStackFloat - Class in net.imglib2.img.display.imagej
TODO
ImageJVirtualStackFloat(RandomAccessibleInterval<S>, Converter<? super S, FloatType>) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStackFloat
 
ImageJVirtualStackFloat(RandomAccessibleInterval<S>, Converter<? super S, FloatType>, ExecutorService) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStackFloat
 
ImageJVirtualStackUnsignedByte - Class in net.imglib2.img.display.imagej
TODO
ImageJVirtualStackUnsignedByte(RandomAccessibleInterval<S>, Converter<? super S, UnsignedByteType>) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStackUnsignedByte
 
ImageJVirtualStackUnsignedByte(RandomAccessibleInterval<S>, Converter<? super S, UnsignedByteType>, ExecutorService) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStackUnsignedByte
 
ImageJVirtualStackUnsignedShort - Class in net.imglib2.img.display.imagej
TODO
ImageJVirtualStackUnsignedShort(RandomAccessibleInterval<S>, Converter<? super S, UnsignedShortType>) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStackUnsignedShort
 
ImageJVirtualStackUnsignedShort(RandomAccessibleInterval<S>, Converter<? super S, UnsignedShortType>, ExecutorService) - Constructor for class net.imglib2.img.display.imagej.ImageJVirtualStackUnsignedShort
 
ImagePlusAdapter - Class in net.imglib2.img
Provides convenience functions to wrap ImageJ 1.x data structures as ImgLib2 ones.
ImagePlusAdapter() - Constructor for class net.imglib2.img.ImagePlusAdapter
 
ImagePlusImg<T extends NativeType<T>,A extends ArrayDataAccess<A>> - Class in net.imglib2.img.imageplus
A container that stores data in an array of 2D slices each as a linear array of basic types.
ImagePlusImg(ImagePlus) - Constructor for class net.imglib2.img.imageplus.ImagePlusImg
 
ImagePlusImg(int, int, int, int, int, Fraction) - Constructor for class net.imglib2.img.imageplus.ImagePlusImg
 
ImagePlusImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.imageplus
Factory that creates an appropriate ImagePlusImg.
ImagePlusImgFactory(T) - Constructor for class net.imglib2.img.imageplus.ImagePlusImgFactory
 
ImagePlusImgFactory() - Constructor for class net.imglib2.img.imageplus.ImagePlusImgFactory
Deprecated.
ImagePlusImgs - Class in net.imglib2.img.imageplus
Convenience factory methods for creation of ImagePlusImg instances with the most common pixel Type variants.
ImageProcessorUtils - Class in net.imglib2.img.display.imagej
 
images - Variable in class net.imglib2.algorithm.math.Compute.Parameters
 
imagesEqual(RandomAccessibleInterval<? extends T>, RandomAccessibleInterval<? extends U>) - Static method in class net.imglib2.util.Util
Checks if both images have equal intervals and content.
imagesEqual(RandomAccessibleInterval<? extends T>, RandomAccessibleInterval<? extends U>, BiPredicate<T, U>) - Static method in class net.imglib2.util.Util
Checks if both images have equal intervals and content.
imageSigma - Variable in class net.imglib2.algorithm.dog.DogDetection
 
ImageTransform<T extends Type<T>> - Class in net.imglib2.algorithm.transformation
TODO
ImageTransform(ExtendedRandomAccessibleInterval<T, Img<T>>, InvertibleBoundable, InterpolatorFactory<T, RandomAccessible<T>>) - Constructor for class net.imglib2.algorithm.transformation.ImageTransform
Deprecated.
Use a different constructor and explicitly define a ImgFactory which will create the output.
ImageTransform(RandomAccessible<T>, Interval, InvertibleBoundable, InterpolatorFactory<T, RandomAccessible<T>>, ImgFactory<T>) - Constructor for class net.imglib2.algorithm.transformation.ImageTransform
 
img - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
img - Variable in class net.imglib2.algorithm.integral.IntegralImg
 
img(RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.math.ImgMath
 
img - Variable in class net.imglib2.img.array.AbstractArrayCursor
Source image
img - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
The underlying source ArrayImg.
Img<T> - Interface in net.imglib2.img
An Img is a RandomAccessibleInterval that has its min at 0n and its max positive.
img - Variable in class net.imglib2.img.unsafe.AbstractUnsafeCursor
Source image
img - Variable in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
The underlying source UnsafeImg.
img - Variable in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
img - Variable in class net.imglib2.type.AbstractBitType
 
img - Variable in class net.imglib2.type.label.BasePairCharType
 
img - Variable in class net.imglib2.type.logic.BitType
 
img - Variable in class net.imglib2.type.logic.NativeBoolType
 
img - Variable in class net.imglib2.type.numeric.ARGBLongAccessType
 
img - Variable in class net.imglib2.type.numeric.ARGBType
 
img - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
img - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
img - Variable in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
img - Variable in class net.imglib2.type.numeric.complex.ComplexFloatType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericByteType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericIntType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericLongType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
img - Variable in class net.imglib2.type.numeric.integer.GenericShortType
 
img - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
img - Variable in class net.imglib2.type.numeric.NativeARGBDoubleType
 
img - Variable in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
img - Variable in class net.imglib2.type.numeric.real.DoubleType
 
img - Variable in class net.imglib2.type.numeric.real.FloatLongAccessType
 
img - Variable in class net.imglib2.type.numeric.real.FloatType
 
img - Variable in class net.imglib2.type.volatiles.VolatileARGBType
 
img - Variable in class net.imglib2.type.volatiles.VolatileByteType
 
img - Variable in class net.imglib2.type.volatiles.VolatileDoubleType
 
img - Variable in class net.imglib2.type.volatiles.VolatileFloatType
 
img - Variable in class net.imglib2.type.volatiles.VolatileIntType
 
img - Variable in class net.imglib2.type.volatiles.VolatileLongType
 
img - Variable in class net.imglib2.type.volatiles.VolatileShortType
 
img - Variable in class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
img - Variable in class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
img - Variable in class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
img - Variable in class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
imgDimension(int) - Method in class net.imglib2.img.cell.CellGrid
Get the number of pixels in a given dimension d.
imgDimensions(long[]) - Method in class net.imglib2.img.cell.CellGrid
Write the number of pixels in each dimension into long[].
imgFactory(R) - Method in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory.LazyCellImgFactory
 
imgFactory() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
imgFactory - Variable in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
imgFactory - Variable in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
imgFactory(S) - Method in class net.imglib2.cache.img.DiskCachedCellImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.array.ArrayImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.cell.CellImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
ImgFactory<T> - Class in net.imglib2.img
TODO
ImgFactory(T) - Constructor for class net.imglib2.img.ImgFactory
 
ImgFactory() - Constructor for class net.imglib2.img.ImgFactory
Deprecated.
imgFactory(S) - Method in class net.imglib2.img.ImgFactory
Creates the same ImgFactory for a different generic parameter if possible.
imgFactory(Supplier<S>) - Method in class net.imglib2.img.ImgFactory
Creates the same ImgFactory for a different generic parameter if possible.
imgFactory(S) - Method in class net.imglib2.img.list.ListImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
imgFactory(S) - Method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
imgFFT() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
ImgLabeling<T,I extends IntegerType<I>> - Class in net.imglib2.roi.labeling
A labeling backed by a image of integer indices.
ImgLabeling(RandomAccessibleInterval<I>) - Constructor for class net.imglib2.roi.labeling.ImgLabeling
 
ImgLib2Assert - Class in net.imglib2.test
 
ImgLibException - Exception in net.imglib2.exception
 
ImgLibException(String) - Constructor for exception net.imglib2.exception.ImgLibException
 
ImgLibException(Object, String) - Constructor for exception net.imglib2.exception.ImgLibException
 
ImgLibException() - Constructor for exception net.imglib2.exception.ImgLibException
 
ImgLibException(Throwable) - Constructor for exception net.imglib2.exception.ImgLibException
 
ImgMath - Class in net.imglib2.algorithm.math
An easy yet high performance way to perform pixel-wise math on one or more RandomAccessibleInterval instances.
ImgMath() - Constructor for class net.imglib2.algorithm.math.ImgMath
 
ImgPlusViews - Class in net.imglib2.img.display.imagej
 
ImgPlusViews() - Constructor for class net.imglib2.img.display.imagej.ImgPlusViews
 
ImgSource<I extends RealType<I>> - Class in net.imglib2.algorithm.math
 
ImgSource(RandomAccessibleInterval<I>) - Constructor for class net.imglib2.algorithm.math.ImgSource
 
ImgSourceIterable<I extends RealType<I>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
ImgSourceIterable(O, Converter<I, O>, RandomAccessibleInterval<I>) - Constructor for class net.imglib2.algorithm.math.execution.ImgSourceIterable
 
ImgSourceIterableDirect<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
ImgSourceIterableDirect(RandomAccessibleInterval<O>) - Constructor for class net.imglib2.algorithm.math.execution.ImgSourceIterableDirect
 
ImgToVirtualStack - Class in net.imglib2.img.display.imagej
 
ImgToVirtualStack() - Constructor for class net.imglib2.img.display.imagej.ImgToVirtualStack
 
ImgUtil - Class in net.imglib2.util
This class contains static methods for copying image data to and from Img instances.
ImgUtil() - Constructor for class net.imglib2.util.ImgUtil
 
ImgView<T extends Type<T>> - Class in net.imglib2.img
Allows a RandomAccessibleInterval to be treated as an Img.
ImgView(RandomAccessibleInterval<T>, ImgFactory<T>) - Constructor for class net.imglib2.img.ImgView
Deprecated.
inc(RandomAccessible<T>, Localizable, long) - Static method in class net.imglib2.algorithm.region.Circles
Writes a circle in the target RandomAccessible.
inc(RandomAccessible<T>, Localizable, long, int, int) - Static method in class net.imglib2.algorithm.region.Circles
Writes a circle in the target RandomAccessible.
inc(RandomAccessible<T>, Localizable, long, long) - Static method in class net.imglib2.algorithm.region.Ellipses
Writes an ellipse in the target RandomAccessible.
inc(RandomAccessible<T>, Localizable, long, long, int, int) - Static method in class net.imglib2.algorithm.region.Ellipses
Writes an ellipse in the target RandomAccessible.
inc - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
inc() - Method in class net.imglib2.type.Index
Increment the index.
inc(int) - Method in class net.imglib2.type.Index
Increase the index by decrement steps.
inc() - Method in class net.imglib2.type.logic.BitType
 
inc() - Method in class net.imglib2.type.logic.NativeBoolType
 
inc() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
inc() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
inc() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
inc() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
inc() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
inc() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
inc() - Method in class net.imglib2.type.numeric.real.FloatType
 
inc() - Method in interface net.imglib2.type.numeric.RealType
 
inc() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
incIndex() - Method in class net.imglib2.type.AbstractNativeLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.AbstractNativeLongAccessType
 
incIndex() - Method in interface net.imglib2.type.NativeLongAccessType
 
incIndex(long) - Method in interface net.imglib2.type.NativeLongAccessType
Increases the index into the current data array by increment steps.
incIndex() - Method in interface net.imglib2.type.NativeType
Deprecated.
Use index().inc() instead. If possible, request the index() object only once and re-use it.
incIndex(int) - Method in interface net.imglib2.type.NativeType
Deprecated.
Use index().inc(int) instead. If possible, request the index() object only once and re-use it.
incIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
incIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
incIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
incIndex() - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
incIndex() - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
incIndex(long) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
incIoBytes(long) - Method in class net.imglib2.cache.iotiming.IoStatistics
 
includesLowerBound(long) - Method in interface net.imglib2.histogram.BinMapper1d
Returns true if values matching the left edge data value for a given bin are counted in the distribution.
includesLowerBound(long) - Method in class net.imglib2.histogram.Histogram1d
Returns true if the given bin interval is closed on the left
includesLowerBound(int, long) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the given bin interval is closed on the left for the given dimension.
includesLowerBound(long) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
includesLowerBound(long) - Method in class net.imglib2.histogram.Real1dBinMapper
 
includesLowerBounds(long[]) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the given bin interval is closed on the left
includesUpperBound(long) - Method in interface net.imglib2.histogram.BinMapper1d
Returns true if values matching the right edge data value for a given bin are counted in the distribution.
includesUpperBound(long) - Method in class net.imglib2.histogram.Histogram1d
Returns true if the given bin interval is closed on the right
includesUpperBound(int, long) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the given bin interval is closed on the right for the given dimension.
includesUpperBound(long) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
includesUpperBound(long) - Method in class net.imglib2.histogram.Real1dBinMapper
 
includesUpperBounds(long[]) - Method in class net.imglib2.histogram.HistogramNd
Returns true if the given bin interval is closed on the right
IncompatibleTypeException - Exception in net.imglib2.exception
Is thrown if a Type is not supported.
IncompatibleTypeException(Object, String) - Constructor for exception net.imglib2.exception.IncompatibleTypeException
 
inConverter - Variable in class net.imglib2.algorithm.math.execution.FunctionCursor
 
inConverter - Variable in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
increment - Variable in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
This is a temporary holder were we store the increment to add to the input image at each iteration.
increment(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Increments the frequency count of a specified bin.
increment(long) - Method in class net.imglib2.histogram.Histogram1d
Directly increment a bin by position.
increment(T) - Method in class net.imglib2.histogram.Histogram1d
Directly increment a bin by value.
increment(long[]) - Method in class net.imglib2.histogram.HistogramNd
Directly increment a bin by position.
increment(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Directly increment a bin by value.
index - Variable in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
index - Variable in class net.imglib2.img.cell.CellLocalizingCursor
The current index of the type.
index - Variable in class net.imglib2.img.cell.CellRandomAccess
The current index of the type.
index - Variable in class net.imglib2.img.planar.PlanarCursor
The current index of the type.
index - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
The current index of the type.
index - Variable in class net.imglib2.iterator.IntervalIterator
 
index - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
 
index - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
index() - Method in class net.imglib2.type.AbstractBitType
 
index() - Method in class net.imglib2.type.AbstractNativeType
 
Index - Class in net.imglib2.type
 
Index() - Constructor for class net.imglib2.type.Index
 
index() - Method in class net.imglib2.type.logic.BitType
 
index() - Method in class net.imglib2.type.logic.NativeBoolType
 
index() - Method in interface net.imglib2.type.NativeType
Get the (modifiable) index into the current data array.
index() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
index() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
index() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
index() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
index() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
index() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
index() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
index() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
index() - Method in class net.imglib2.type.numeric.real.DoubleType
 
index() - Method in class net.imglib2.type.numeric.real.FloatType
 
index() - Method in class net.imglib2.type.volatiles.AbstractVolatileNativeNumericType
 
index() - Method in class net.imglib2.type.volatiles.AbstractVolatileNativeRealType
 
indexOf(List<T>) - Method in class net.imglib2.labeling.LabelingMapping
Deprecated.
 
indexOf(T[]) - Method in class net.imglib2.labeling.LabelingMapping
Deprecated.
 
indexOf(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
indexToFragmentProperties - Variable in class net.imglib2.roi.labeling.LabelRegions
 
indexToGlobalPosition(int, int) - Method in class net.imglib2.img.cell.Cell
 
indexToGlobalPosition(int, long[]) - Method in class net.imglib2.img.cell.Cell
 
indexToGlobalPosition(int, int, int[]) - Method in class net.imglib2.img.planar.PlanarImg
Compute a global position from the index of a slice and an index within that slice.
indexToGlobalPosition(int, int, int) - Method in class net.imglib2.img.planar.PlanarImg
Compute a global position from the index of a slice and an index within that slice.
indexToPosition(int, int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, Dimensions, Positionable) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(int, int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPosition(long, long[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionForInterval(long, Interval, Positionable) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], float[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], double[]) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], int[], int[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(int, int[], int[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
indexToPositionWithOffset(long, long[], long[], long[], int) - Static method in class net.imglib2.util.IntervalIndexer
 
inDouble(double, Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inDouble(double[], Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inDouble(double, Img<T>, OutOfBoundsFactory<DoubleType, RandomAccessibleInterval<DoubleType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img
inDouble(double[], Img<T>, OutOfBoundsFactory<DoubleType, RandomAccessibleInterval<DoubleType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img
inDouble(double, RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<DoubleType>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an infinite RandomAccessible
inDouble(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<DoubleType>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an infinite RandomAccessible
inDoubleInPlace(double, Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with double precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inDoubleInPlace(double[], Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with double precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inDoubleInPlace(double, Img<T>, OutOfBoundsFactory<DoubleType, RandomAccessibleInterval<DoubleType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with double precision on an entire Img
inDoubleInPlace(double[], Img<T>, OutOfBoundsFactory<DoubleType, RandomAccessibleInterval<DoubleType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with double precision on an entire Img
inFloat(double, Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inFloat(double[], Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inFloat(double, Img<T>, OutOfBoundsFactory<FloatType, RandomAccessibleInterval<FloatType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img
inFloat(double[], Img<T>, OutOfBoundsFactory<FloatType, RandomAccessibleInterval<FloatType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img
inFloat(double, RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<FloatType>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an infinite RandomAccessible
inFloat(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<FloatType>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an infinite RandomAccessible
inFloatInPlace(double, Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inFloatInPlace(double[], Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inFloatInPlace(double, Img<T>, OutOfBoundsFactory<FloatType, RandomAccessibleInterval<FloatType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with float precision on an entire Img
inFloatInPlace(double[], Img<T>, OutOfBoundsFactory<FloatType, RandomAccessibleInterval<FloatType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with float precision on an entire Img
inFloatInPlace(Img<T>, double, PeronaMalikAnisotropicDiffusion.DiffusionFunction) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
inFloatInPlace(Img<T>, double, double) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
inFloatInPlace(RandomAccessibleInterval<T>, ImgFactory<FloatType>, double, PeronaMalikAnisotropicDiffusion.DiffusionFunction) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
inFloatInPlace(RandomAccessibleInterval<T>, ImgFactory<FloatType>, double, double) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
initDensityArray() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
initDensityArray() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
 
initDensityArray() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme3D
 
initDiffusionTensorArray() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
initDiffusionTensorArray() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
 
initDiffusionTensorArray() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme3D
 
initHorizon - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
initialize(double) - Method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussCalculator
 
initializeAntiCausalCoefficients(double, double, T, RandomAccess<T>) - Static method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
initializeCausalCoefficients(double, double, int, RandomAccess<T>) - Static method in class net.imglib2.algorithm.bspline.BSplineDecomposition
Data must be 1d or permuted such that the first dimension is the dimension to be iterated over.
initializeCellsAsDirty(boolean) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions
Specify whether cells initialized by a CellLoader should be marked as dirty.
initializeCellsAsDirty() - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
initializeFit(Localizable, Observation) - Method in class net.imglib2.algorithm.localization.MLEllipticGaussianEstimator
 
initializeFit(Localizable, Observation) - Method in class net.imglib2.algorithm.localization.MLGaussianEstimator
 
initializeFit(Localizable, Observation) - Method in interface net.imglib2.algorithm.localization.StartPointEstimator
Returns a new double array containing an starting point estimate for a specific curve fitting problem.
initialMax - Variable in class net.imglib2.roi.util.PositionableInterval
 
initialMin - Variable in class net.imglib2.roi.util.PositionableInterval
 
inNumericType(double, Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with the precision of the type provided on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inNumericType(double[], Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with the precision of the type provided on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inNumericType(double, Img<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with the precision of the type provided on an entire Img
inNumericType(double[], Img<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with the precision of the type provided on an entire Img
inNumericType(double, RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with the precision of the type provided on an infinite RandomAccessible
inNumericType(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with the precision of the type provided on an infinite RandomAccessible
inNumericTypeInPlace(double, Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with the precision of the type provided on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inNumericTypeInPlace(double[], Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with the precision of the type provided on an entire Img using the OutOfBoundsMirrorFactory with single boundary
inNumericTypeInPlace(double, Img<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with the precision of the type provided on an entire Img
inNumericTypeInPlace(double[], Img<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution in-place (temporary imgs are necessary) with the precision of the type provided on an entire Img
input - Variable in class net.imglib2.algorithm.dog.DogDetection
 
input - Variable in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
The input image, will be modified by this algorithm.
instance - Static variable in class net.imglib2.realtransform.InversePerspective3D
 
instance - Static variable in class net.imglib2.realtransform.Perspective3D
 
INT(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
INT(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
int2long(int[]) - Static method in class net.imglib2.util.Util
 
IntAccess - Interface in net.imglib2.img.basictypeaccess
TODO
IntAccessProxy<T extends GenericIntType<T>> - Class in net.imglib2.img.io.proxyaccess
Proxy access over any GenericIntType container.
IntAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.IntAccessProxy
 
IntArray - Class in net.imglib2.img.basictypeaccess.array
 
IntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.IntArray
 
IntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.IntArray
 
intArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
IntArrayRankedUnionFind - Class in net.imglib2.algorithm.util.unionfind
 
IntArrayRankedUnionFind(int) - Constructor for class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
 
IntArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.IntArrayType
 
IntArrayUnionFind - Class in net.imglib2.algorithm.util.unionfind
 
IntArrayUnionFind(int) - Constructor for class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
IntArrayUnionFind(int, IntBinaryOperator) - Constructor for class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
IntAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ShortType, ShortArray>.
IntAWTScreenImage(ArrayImg<IntType, IntArray>) - Constructor for class net.imglib2.display.screenimage.awt.IntAWTScreenImage
 
IntAWTScreenImage(IntType, IntArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.IntAWTScreenImage
 
IntBinMapper<T extends IntegerType<T>> - Class in net.imglib2.algorithm.stats
A HistogramBinMapper over IntegerTypes, using the values themselves as the histogram bin centers.
IntBinMapper(T, T) - Constructor for class net.imglib2.algorithm.stats.IntBinMapper
Create an IntBinMapper with the given minimum and maximum bins.
IntBinMapper(T) - Constructor for class net.imglib2.algorithm.stats.IntBinMapper
Create an IntBinMapper with minimum and maximum bin centers corresponding to the minimal and maximal Type values.
IntBounds(Interval) - Constructor for class net.imglib2.roi.Bounds.IntBounds
 
Integer1dBinMapper<T extends IntegerType<T>> - Class in net.imglib2.histogram
Maps integer values into a 1-d set of bins.
Integer1dBinMapper(long, long, boolean) - Constructor for class net.imglib2.histogram.Integer1dBinMapper
Specify a mapping of integral data from a user defined range into a specified number of bins.
integerCollection(IterableInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps an IntegerType iterable image as a collection.
integerList(RandomAccessibleInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps an IntegerType random-accessible image as a list.
IntegerType<T extends IntegerType<T>> - Interface in net.imglib2.type.numeric
TODO
integral - Variable in class net.imglib2.algorithm.integral.IntegralImg
 
IntegralImg<R extends NumericType<R>,T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.integral
n-dimensional integral image that stores sums using type <T>.
IntegralImg(RandomAccessibleInterval<R>, T, Converter<R, T>) - Constructor for class net.imglib2.algorithm.integral.IntegralImg
 
IntegralImg(RandomAccessibleInterval<R>, T, Converter<R, T>, int) - Constructor for class net.imglib2.algorithm.integral.IntegralImg
 
integralImg - Variable in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
IntegralImgDouble<R extends NumericType<R>> - Class in net.imglib2.algorithm.integral
Special implementation for double using the basic type to sum up the individual lines.
IntegralImgDouble(RandomAccessibleInterval<R>, DoubleType, Converter<R, DoubleType>) - Constructor for class net.imglib2.algorithm.integral.IntegralImgDouble
 
IntegralImgLong<R extends NumericType<R>> - Class in net.imglib2.algorithm.integral
Special implementation for long using the basic type to sum up the individual lines.
IntegralImgLong(RandomAccessibleInterval<R>, LongType, Converter<R, LongType>) - Constructor for class net.imglib2.algorithm.integral.IntegralImgLong
 
integrateLine(int, RandomAccess<T>, T, long) - Method in class net.imglib2.algorithm.integral.IntegralImg
 
integrateLine(int, RandomAccess<DoubleType>, DoubleType, long) - Method in class net.imglib2.algorithm.integral.IntegralImgDouble
 
integrateLine(int, RandomAccess<LongType>, LongType, long) - Method in class net.imglib2.algorithm.integral.IntegralImgLong
 
integrateLineDim0(Converter<R, T>, RandomAccess<R>, RandomAccess<T>, T, T, long) - Method in class net.imglib2.algorithm.integral.IntegralImg
 
integrateLineDim0(Converter<R, DoubleType>, RandomAccess<R>, RandomAccess<DoubleType>, DoubleType, DoubleType, long) - Method in class net.imglib2.algorithm.integral.IntegralImgDouble
 
integrateLineDim0(Converter<R, LongType>, RandomAccess<R>, RandomAccess<LongType>, LongType, LongType, long) - Method in class net.imglib2.algorithm.integral.IntegralImgLong
 
intensity - Variable in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
intern(List<T>) - Method in class net.imglib2.labeling.LabelingMapping
Deprecated.
Return the canonical list for the given list
intern(T[]) - Method in class net.imglib2.labeling.LabelingMapping
Deprecated.
 
intern(List<T>) - Method in class net.imglib2.labeling.LabelingType
Deprecated.
This method returns the canonical object for the given labeling.
intern(T) - Method in class net.imglib2.labeling.LabelingType
Deprecated.
Return the canonical labeling object representing the single labeling.
intern(Set<T>) - Method in class net.imglib2.roi.labeling.LabelingMapping
Return the canonical set for the given label set.
InternedList(List<T1>, int, LabelingMapping<T1>) - Constructor for class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
internedLists - Variable in class net.imglib2.labeling.LabelingMapping
Deprecated.
 
Interpolant<T,F> - Class in net.imglib2.interpolation
A RealRandomAccessible that is generated through interpolation.
Interpolant(EuclideanSpace, InterpolatorFactory<T, F>) - Constructor for class net.imglib2.interpolation.Interpolant
Deprecated.
use the compile time safe constructor Interpolant(Object, InterpolatorFactory, int) instead
Interpolant(F, InterpolatorFactory<T, F>, int) - Constructor for class net.imglib2.interpolation.Interpolant
Create an Interpolant for a source, a compatible intepolator factory and a specified number of dimensions.
interpolate(F, InterpolatorFactory<T, F>) - Static method in class net.imglib2.view.Views
Returns a RealRandomAccessible using interpolation
InterpolatedRealTransform - Class in net.imglib2.realtransform
A RealTransform that linearly interpolates between two RealTransforms.
InterpolatedRealTransform(RealTransform, RealTransform, double) - Constructor for class net.imglib2.realtransform.InterpolatedRealTransform
 
interpolatedValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
interpolateEdgeXAtY(int, double) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Given an edge and a Y coordinate, find its X coordinate at that Y coordinate.
InterpolatorFactory<T,F> - Interface in net.imglib2.interpolation
 
intersect(double, double, double, double, int) - Method in interface net.imglib2.algorithm.morphology.distance.Distance
Determine the intersection point in dimension dim of two members of the function family.
intersect(double, double, double, double, int) - Method in class net.imglib2.algorithm.morphology.distance.EuclidianDistanceAnisotropic
 
intersect(double, double, double, double, int) - Method in class net.imglib2.algorithm.morphology.distance.EuclidianDistanceIsotropic
 
intersect(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Compute the intersection of two intervals.
intersect(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Compute the intersection of two intervals.
intersectBounded(Bounds.IntBounds, Bounds.IntBounds) - Method in class net.imglib2.roi.Bounds.IntBounds
 
intersectBounded(B, B) - Method in class net.imglib2.roi.Bounds
Intersection of two bounded Bounds.
intersectBounded(Bounds.RealBounds, Bounds.RealBounds) - Method in class net.imglib2.roi.Bounds.RealBounds
 
IntersectionInterval(Interval, Interval) - Constructor for class net.imglib2.roi.Bounds.IntersectionInterval
 
IntersectionRealInterval(RealInterval, RealInterval) - Constructor for class net.imglib2.roi.Bounds.IntersectionRealInterval
 
interval - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
interval - Variable in class net.imglib2.algorithm.dog.DogDetection
 
Interval - Interface in net.imglib2
{x∈Zn|mindxdmaxd;d∈{0… n-1}}
interval() - Method in class net.imglib2.roi.Bounds
 
interval - Variable in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
interval - Variable in class net.imglib2.view.iteration.IterableTransformBuilder
The interval which should be iterated.
interval(RandomAccessible<T>, long[], long[]) - Static method in class net.imglib2.view.Views
Define an interval on a RandomAccessible.
interval(RandomAccessible<T>, Interval) - Static method in class net.imglib2.view.Views
Define an interval on a RandomAccessible.
IntervalChunks - Class in net.imglib2.loops
 
IntervalChunks() - Constructor for class net.imglib2.loops.IntervalChunks
 
IntervalIndexer - Class in net.imglib2.util
N-dimensional data is often stored in a flat 1-dimensional array.
IntervalIndexer() - Constructor for class net.imglib2.util.IntervalIndexer
 
IntervalIterator - Class in net.imglib2.iterator
Use this class to iterate a virtual Interval in flat order, that is: row by row, plane by plane, cube by cube, ...
IntervalIterator(long[]) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates an Interval of the given dimensions with min= 0n
IntervalIterator(int[]) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates an Interval of the given dimensions with min= 0n
IntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates an Interval with given min and max.
IntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates an Interval with given min and max.
IntervalIterator(Interval) - Constructor for class net.imglib2.iterator.IntervalIterator
Iterates a given Interval.
IntervalKeyLoaderAsLongKeyLoader<A> - Class in net.imglib2.cache.util
This CacheLoader maps a Long key into an Interval based on a CellGrid.
IntervalKeyLoaderAsLongKeyLoader(CellGrid, Function<Interval, A>) - Constructor for class net.imglib2.cache.util.IntervalKeyLoaderAsLongKeyLoader
 
Intervals - Class in net.imglib2.util
Convenience methods for manipulating Intervals.
Intervals() - Constructor for class net.imglib2.util.Intervals
 
IntervalSampler<T> - Class in net.imglib2.display.projector.sampler
allows stepwise access to a preselected projected dimension.
IntervalSampler(int, long, long) - Constructor for class net.imglib2.display.projector.sampler.IntervalSampler
 
intervalSource(RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.math.ImgMath
Synonym of img(RandomAccessibleInterval), given that img is a widely used variable name.
IntervalView<T> - Class in net.imglib2.view
IntervalView is a view that puts Interval boundaries on its source RandomAccessible.
IntervalView(RandomAccessible<T>, Interval) - Constructor for class net.imglib2.view.IntervalView
Create a view that defines an interval on a source.
IntervalView(RandomAccessible<T>, long[], long[]) - Constructor for class net.imglib2.view.IntervalView
Create a view that defines an interval on a source.
IntImagePlus<T extends NativeType<T>> - Class in net.imglib2.img.imageplus
ImagePlusImg for integer-stored data.
IntImagePlus(long[], Fraction) - Constructor for class net.imglib2.img.imageplus.IntImagePlus
 
IntImagePlus(ImagePlus) - Constructor for class net.imglib2.img.imageplus.IntImagePlus
 
IntLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
IntLongAccessType - Class in net.imglib2.type.numeric.integer
 
IntLongAccessType(NativeLongAccessImg<?, ? extends IntLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.IntLongAccessType
 
IntLongAccessType(int) - Constructor for class net.imglib2.type.numeric.integer.IntLongAccessType
 
IntLongAccessType(IntLongAccess) - Constructor for class net.imglib2.type.numeric.integer.IntLongAccessType
 
IntLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.IntLongAccessType
 
IntLongAccessTypeIntTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
IntLongAccessTypeIntTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.IntLongAccessTypeIntTypeConverter
 
IntLongAccessTypeIntTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
IntNtree - Class in net.imglib2.img.sparse
IntAccess based on a Ntree.
IntNtree(long[], long[], int) - Constructor for class net.imglib2.img.sparse.IntNtree
Standard constructor called by factory
into(RandomAccessibleInterval<O>) - Method in class net.imglib2.algorithm.math.Compute
Execute the computation and store the result into the target.
into(RandomAccessibleInterval<O>, Converter<RealType<?>, O>) - Method in class net.imglib2.algorithm.math.Compute
Execute the mathematical operations and store the result into the given RandomAccessibleInterval.
into(RandomAccessibleInterval<O>, C) - Method in class net.imglib2.algorithm.math.Compute
 
into(RandomAccessibleInterval<O>, Converter<RealType<?>, C>, C, Converter<C, O>) - Method in class net.imglib2.algorithm.math.Compute
 
into(RandomAccessibleInterval<O>, Converter<RealType<?>, C>, C, Converter<C, O>, boolean) - Method in class net.imglib2.algorithm.math.Compute
Execute the mathematical operations and store the result into the given RandomAccessibleInterval.
intoArrayImg() - Method in class net.imglib2.algorithm.math.Compute
 
intoArrayImg(C, O) - Method in class net.imglib2.algorithm.math.Compute
 
intoArrayImg(O) - Method in class net.imglib2.algorithm.math.Compute
 
intoImg() - Method in class net.imglib2.algorithm.math.Compute
Execute the computation and store the result into a newly created Img of the same Type (and kind, by ImgFactory) as one of the input images, using as the computation Type the type of that picked input image.
intoImg(O) - Method in class net.imglib2.algorithm.math.Compute
Execute the computation and store the result into a newly created Img of the same kind, by ImgFactory, as one of the input images, but of type outputType, which is also used as the computation Type.
intoImg(C, O) - Method in class net.imglib2.algorithm.math.Compute
Execute the computation and store the result into a newly created Img of the same kind, by ImgFactory, as one of the input images, but of type outputType, while using computeType for math operations, converting to the outputType to store the result.
ints(long...) - Static method in class net.imglib2.img.array.ArrayImgs
ints(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<IntType, IntArray> reusing a passed int[] array.
ints(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<IntType, IntAccess> using a IntAccess passed as argument.
ints(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
ints(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
ints(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
ints(IntLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<IntType, IntArray> reusing a passed int[] array.
intSetCount() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
 
intSetCount() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
intSize() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
 
intSize() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
IntType - Class in net.imglib2.type.numeric.integer
TODO
IntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.IntType
 
IntType(int) - Constructor for class net.imglib2.type.numeric.integer.IntType
 
IntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.IntType
 
IntType() - Constructor for class net.imglib2.type.numeric.integer.IntType
 
IntUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
IntUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
IntUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
IntUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
IntUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
invalid() - Static method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
invalidate(K) - Method in interface net.imglib2.cache.AbstractCache
Removes and discards the entry with the specified key.
invalidate(K) - Method in interface net.imglib2.cache.CacheRemover
Called when a specific entry is invalidated from the cache.
invalidate(Long) - Method in class net.imglib2.cache.img.DiskCellCache
Removes the file for the given key (if it exists).
Invalidate<K> - Interface in net.imglib2.cache
A collection of methods that invalidate cache entries.
invalidate(K) - Method in interface net.imglib2.cache.Invalidate
Removes and discards the entry with the specified key.
invalidate(K) - Method in class net.imglib2.cache.IoSync
Cancel any enqueued write for key.
invalidate(K) - Method in class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
invalidate(K) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
invalidate(K) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 
invalidate(K) - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
 
invalidate(K) - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
invalidate(K) - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
 
invalidate(K) - Method in class net.imglib2.cache.ref.WeakRefVolatileCache
 
invalidate(K) - Method in class net.imglib2.cache.ref.WeakRefVolatileLoaderCache
 
invalidate(K) - Method in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
invalidate(K) - Method in class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
invalidate(K) - Method in class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
invalidate(K) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
invalidate(K) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
invalidate(K) - Method in class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
invalidate(K) - Method in class net.imglib2.cache.util.VolatileCacheAsUncheckedVolatileCacheAdapter
 
invalidate(K) - Method in class net.imglib2.cache.util.VolatileLoaderCacheAsVolatileCacheAdapter
 
invalidate(K) - Method in interface net.imglib2.cache.volatiles.AbstractUncheckedVolatileCache
Removes and discards the entry with the specified key.
invalidate(K) - Method in interface net.imglib2.cache.volatiles.AbstractVolatileCache
Removes and discards the entry with the specified key.
invalidateAll(long) - Method in interface net.imglib2.cache.AbstractCache
Removes and discards all entries.
invalidateAll(long) - Method in interface net.imglib2.cache.CacheRemover
Called when all entries are invalidated from the cache.
invalidateAll(long) - Method in class net.imglib2.cache.img.DiskCellCache
Removes all files.
invalidateAll(long) - Method in interface net.imglib2.cache.Invalidate
Removes and discards all entries.
invalidateAll() - Method in interface net.imglib2.cache.Invalidate
Removes and discards all entries.
invalidateAll(long) - Method in class net.imglib2.cache.IoSync
Cancel all enqueued writes.
invalidateAll(long) - Method in class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
invalidateAll(long) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
invalidateAll(long) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 
invalidateAll(long) - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
 
invalidateAll(long) - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
invalidateAll(long) - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
 
invalidateAll(long) - Method in class net.imglib2.cache.ref.WeakRefVolatileCache
 
invalidateAll(long) - Method in class net.imglib2.cache.ref.WeakRefVolatileLoaderCache
 
invalidateAll(long) - Method in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
invalidateAll(long) - Method in class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
invalidateAll(long) - Method in class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
invalidateAll(long) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
invalidateAll(long) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
invalidateAll(long) - Method in class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
invalidateAll(long) - Method in class net.imglib2.cache.util.VolatileCacheAsUncheckedVolatileCacheAdapter
 
invalidateAll(long) - Method in class net.imglib2.cache.util.VolatileLoaderCacheAsVolatileCacheAdapter
 
invalidateAll(long) - Method in interface net.imglib2.cache.volatiles.AbstractUncheckedVolatileCache
Removes and discards all entries.
invalidateAll(long) - Method in interface net.imglib2.cache.volatiles.AbstractVolatileCache
Removes and discards all entries.
invalidateCachedState() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
invalidateCachedState() - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
invalidateIf(long, Predicate<K>) - Method in interface net.imglib2.cache.AbstractCache
Removes and discards all entries with keys matching condition.
invalidateIf(long, Predicate<K>) - Method in interface net.imglib2.cache.CacheRemover
Called when all entries with keys matching condition are invalidated from the cache.
invalidateIf(long, Predicate<Long>) - Method in class net.imglib2.cache.img.DiskCellCache
Removes all files for keys matching the given condition.
invalidateIf(long, Predicate<K>) - Method in interface net.imglib2.cache.Invalidate
Removes and discards all entries with keys matching condition.
invalidateIf(Predicate<K>) - Method in interface net.imglib2.cache.Invalidate
Removes and discards all entries with keys matching condition.
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.IoSync
Cancel all enqueued writes for keys matching condition.
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.ref.WeakRefVolatileCache
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.ref.WeakRefVolatileLoaderCache
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.util.VolatileCacheAsUncheckedVolatileCacheAdapter
 
invalidateIf(long, Predicate<K>) - Method in class net.imglib2.cache.util.VolatileLoaderCacheAsVolatileCacheAdapter
 
invalidateIf(long, Predicate<K>) - Method in interface net.imglib2.cache.volatiles.AbstractUncheckedVolatileCache
Removes and discards all entries with keys matching condition.
invalidateIf(long, Predicate<K>) - Method in interface net.imglib2.cache.volatiles.AbstractVolatileCache
Removes and discards all entries with keys matching condition.
InvalidDimensionsException - Exception in net.imglib2.exception
 
InvalidDimensionsException(long[], String) - Constructor for exception net.imglib2.exception.InvalidDimensionsException
 
InvalidDimensionsException(int[], String) - Constructor for exception net.imglib2.exception.InvalidDimensionsException
 
inverse() - Method in class net.imglib2.realtransform.AbstractScale
 
inverse() - Method in class net.imglib2.realtransform.AbstractTranslation
 
inverse() - Method in interface net.imglib2.realtransform.AffineGet
 
inverse - Variable in class net.imglib2.realtransform.AffineTransform
 
inverse() - Method in class net.imglib2.realtransform.AffineTransform
 
inverse - Variable in class net.imglib2.realtransform.AffineTransform2D
 
inverse() - Method in class net.imglib2.realtransform.AffineTransform2D
 
inverse - Variable in class net.imglib2.realtransform.AffineTransform3D
 
inverse() - Method in class net.imglib2.realtransform.AffineTransform3D
 
inverse() - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
inverse() - Method in class net.imglib2.realtransform.HomographyTransform2D
 
inverse() - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
inverse() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
inverse() - Method in class net.imglib2.realtransform.InversePerspective3D
 
inverse() - Method in class net.imglib2.realtransform.InverseRealTransform
 
inverse() - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Get the inverse transform.
inverse() - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
inverse() - Method in class net.imglib2.realtransform.Perspective3D
 
inverse() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
inverse - Variable in class net.imglib2.realtransform.Scale
 
inverse() - Method in class net.imglib2.realtransform.Scale
 
inverse - Variable in class net.imglib2.realtransform.Scale2D
 
inverse() - Method in class net.imglib2.realtransform.Scale2D
 
inverse - Variable in class net.imglib2.realtransform.Scale3D
 
inverse() - Method in class net.imglib2.realtransform.Scale3D
 
inverse() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
inverse() - Method in interface net.imglib2.realtransform.ScaleAndTranslationGet
 
inverse() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
inverse() - Method in interface net.imglib2.realtransform.ScaleGet
 
inverse() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
inverse - Variable in class net.imglib2.realtransform.Translation
 
inverse() - Method in class net.imglib2.realtransform.Translation
 
inverse - Variable in class net.imglib2.realtransform.Translation2D
 
inverse() - Method in class net.imglib2.realtransform.Translation2D
 
inverse - Variable in class net.imglib2.realtransform.Translation3D
 
inverse() - Method in class net.imglib2.realtransform.Translation3D
 
inverse() - Method in interface net.imglib2.realtransform.TranslationGet
 
inverse() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
inverse() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
inverse - Variable in class net.imglib2.transform.integer.SequentializeTransform
 
inverse() - Method in class net.imglib2.transform.integer.SequentializeTransform
 
inverse - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
inverse() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
inverse - Variable in class net.imglib2.transform.integer.TranslationTransform
 
inverse() - Method in class net.imglib2.transform.integer.TranslationTransform
 
inverse() - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
inverse() - Method in class net.imglib2.transform.InverseTransform
 
inverse() - Method in interface net.imglib2.transform.InvertibleTransform
Get the inverse transform.
InverseDistanceWeightingInterpolator<T extends RealType<T>> - Class in net.imglib2.interpolation.neighborsearch
RealRandomAccess to a KNearestNeighborSearch whose sample value is generated by weighting the k nearest neighbors of a query real coordinate by their inverse distance to an arbitrary power p.
InverseDistanceWeightingInterpolator(KNearestNeighborSearch<T>, double) - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
InverseDistanceWeightingInterpolatorFactory<T extends RealType<T>> - Class in net.imglib2.interpolation.neighborsearch
Factory for InverseDistanceWeightingInterpolator instances that work on a KNearestNeighborSearch.
InverseDistanceWeightingInterpolatorFactory() - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
 
InverseDistanceWeightingInterpolatorFactory(double) - Constructor for class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
 
InverseFourierConvolution<T extends RealType<T>,S extends RealType<S>> - Class in net.imglib2.algorithm.fft
Deprecated.
use FFT instead
InverseFourierConvolution(RandomAccessibleInterval<T>, RandomAccessibleInterval<S>, ImgFactory<T>, ImgFactory<S>, ImgFactory<ComplexFloatType>) - Constructor for class net.imglib2.algorithm.fft.InverseFourierConvolution
Deprecated.
 
InverseFourierConvolution(Img<T>, Img<S>, ImgFactory<ComplexFloatType>) - Constructor for class net.imglib2.algorithm.fft.InverseFourierConvolution
Deprecated.
 
InverseFourierConvolution(Img<T>, Img<S>) - Constructor for class net.imglib2.algorithm.fft.InverseFourierConvolution
Deprecated.
 
InverseFourierTransform<T extends RealType<T>,S extends ComplexType<S>> - Class in net.imglib2.algorithm.fft
Deprecated.
use FFT instead
InverseFourierTransform(RandomAccessibleInterval<S>, ImgFactory<T>, T, FourierTransform.Rearrangement, boolean, boolean, int[], int[]) - Constructor for class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
InverseFourierTransform(RandomAccessibleInterval<S>, ImgFactory<T>, FourierTransform<T, ?>) - Constructor for class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
This inverse FFT is computed in place, i.e.
InverseFourierTransform(RandomAccessibleInterval<S>, ImgFactory<T>, FourierTransform<?, ?>, T) - Constructor for class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
This inverse FFT can be only done in place, i.e.
InverseFourierTransform(RandomAccessibleInterval<S>, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
This inverse FFT can be only done in place, i.e.
InverseFourierTransform(Img<S>, FourierTransform<T, ?>) - Constructor for class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
This inverse FFT can be only done in place, if desired.
InverseFourierTransform(Img<S>, FourierTransform<?, ?>, T) - Constructor for class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
This inverse FFT can be only done in place, if desired.
InverseFourierTransform(Img<S>, T) - Constructor for class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
This inverse FFT can be only done in place, if desired.
inverseLut - Variable in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
InversePerspective3D - Class in net.imglib2.realtransform
3d inverse perspective transformation.
InverseRealTransform - Class in net.imglib2.realtransform
Final implementation of the inverse of an InvertibleRealTransform that simply replaces apply by applyInverse and conversely.
InverseRealTransform(InvertibleRealTransform) - Constructor for class net.imglib2.realtransform.InverseRealTransform
 
InverseRealTransformGradientDescent - Class in net.imglib2.realtransform.inverse
 
InverseRealTransformGradientDescent(int, DifferentiableRealTransform) - Constructor for class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
InverseShearTransform - Class in net.imglib2.transform.integer.shear
Backward implementation of the most simple case of a shear transform: coordinate[ shearDimension ] -= coordinate[ referenceDimension ]
InverseShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.InverseShearTransform
 
InverseShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.InverseShearTransform
Protected constructor for passing an inverse to avoid construction of unnecessary objects.
inverseTol(double[], double[], double, int) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
inverseTransform - Variable in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
InverseTransform - Class in net.imglib2.transform
Final implementation of the inverse of an InvertibleTransform that simply replaces apply by applyInverse and conversely.
InverseTransform(InvertibleTransform) - Constructor for class net.imglib2.transform.InverseTransform
 
invert() - Method in class net.imglib2.realtransform.AffineTransform
 
invert() - Method in class net.imglib2.realtransform.AffineTransform2D
 
invert() - Method in class net.imglib2.realtransform.AffineTransform3D
 
invert - Variable in class net.imglib2.transform.integer.MixedTransform
for each component of the target vector (before translation).
invert() - Method in class net.imglib2.util.Fraction
Inverts this fraction by exchanging numerator and denominator
invert3x3(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
Invert a 3x3 matrix given as row major double[] in place.
invert3x3(double, double, double, double, double, double, double, double, double) - Static method in class net.imglib2.util.LinAlgHelpers
Invert a 3x3 matrix given as elements in row major order.
invertAxis(Interval, int) - Static method in class net.imglib2.util.Intervals
Invert the bounds on the d-axis of the given interval
invertAxis(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Invert the d-axis.
invertAxis(RandomAccessibleInterval<T>, int) - Static method in class net.imglib2.view.Views
Invert the d-axis.
invertAxis(int, int) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.invertAxis(RandomAccessible, int).
InvertibleDeformationFieldTransform<T extends RealType<T>> - Class in net.imglib2.realtransform
 
InvertibleDeformationFieldTransform(DeformationFieldTransform<T>) - Constructor for class net.imglib2.realtransform.InvertibleDeformationFieldTransform
 
InvertibleRealTransform - Interface in net.imglib2.realtransform
Invertible transformation from Rn to Rm .
InvertibleRealTransformSequence - Class in net.imglib2.realtransform
InvertibleRealTransformSequence() - Constructor for class net.imglib2.realtransform.InvertibleRealTransformSequence
 
InvertibleTransform - Interface in net.imglib2.transform
Invertible transformation from Zn to Zm .
InvertibleTransformByGradientDescent - Class in net.imglib2.realtransform.inverse
Use gradient descent to iteratively estimate the inverse of a differentiable forward transformation.
InvertibleTransformByGradientDescent(DifferentiableRealTransform) - Constructor for class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
InvertibleTransformByGradientDescent(DifferentiableRealTransform, boolean) - Constructor for class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
InvertibleTransformByGradientDescent(DifferentiableRealTransform, BacktrackingLineSearch, boolean) - Constructor for class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
invertSymmetric2x2(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
Inverts a (invertible) symmetric 2x2 matrix.
invertSymmetric3x3(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
Inverts a (invertible) symmetric 3x3 matrix.
invertT() - Method in class net.imglib2.realtransform.AffineTransform
 
invMap(int) - Method in interface net.imglib2.algorithm.stats.HistogramBinMapper
Maps a given histogram bin index to a Type containing the bin center value.
invMap(int) - Method in class net.imglib2.algorithm.stats.IntBinMapper
 
invMap(int) - Method in class net.imglib2.algorithm.stats.RealBinMapper
 
invokeAll(Collection<? extends Callable<T>>) - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
invokeAll(Collection<? extends Callable<T>>, long, TimeUnit) - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
IoStatistics - Class in net.imglib2.cache.iotiming
 
IoStatistics() - Constructor for class net.imglib2.cache.iotiming.IoStatistics
 
IoSync<K,V,D> - Class in net.imglib2.cache
Handle concurrent loading and saving of cache entries.
IoSync(T) - Constructor for class net.imglib2.cache.IoSync
Create a new IoSync that asynchronously forwards to the specified CacheRemover.
IoSync(T, int, int) - Constructor for class net.imglib2.cache.IoSync
Create a new IoSync that asynchronously forwards to the specified CacheRemover.
IoSync(CacheLoader<K, V>, CacheRemover<K, V, D>, int, int) - Constructor for class net.imglib2.cache.IoSync
Create a new IoSync that asynchronously forwards to the specified CacheRemover.
IoTimeBudget - Class in net.imglib2.cache.iotiming
Budget of time that can be spent in blocking IO.
IoTimeBudget() - Constructor for class net.imglib2.cache.iotiming.IoTimeBudget
 
isAll() - Method in interface net.imglib2.roi.MaskPredicate
Returns true if Predicate.test(T) is known to always return true.
isApproxEqual(float, float, float) - Static method in class net.imglib2.util.Util
 
isApproxEqual(double, double, double) - Static method in class net.imglib2.util.Util
 
isArray - Variable in class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
 
isArray() - Method in class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
 
isArray - Variable in class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
 
isArray() - Method in class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
 
isArray - Variable in class net.imglib2.algorithm.gauss.GaussNativeType
Deprecated.
 
isArray() - Method in class net.imglib2.algorithm.gauss.GaussNativeType
Deprecated.
 
isComponentMapping(Mixed) - Static method in class net.imglib2.view.TransformBuilder
 
isComposite(int) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Gets whether the given position index is included in composite values.
isComposite() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Gets whether composite mode is enabled for all positions.
isComposite(int) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Gets whether the given position index is included in composite values.
isComposite() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Gets whether composite mode is enabled for all positions.
isContinuous(RealTransform) - Static method in class net.imglib2.roi.Operators.RealTransformMaskOperator
Checks if the given transform is a continuous transform.
isDirty() - Method in interface net.imglib2.Dirty
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyBooleanArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileBooleanArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
isDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
isEmpty() - Method in class net.imglib2.algorithm.labeling.AllConnectedComponents.PositionStack
Deprecated.
 
isEmpty() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
isEmpty() - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
 
isEmpty() - Method in class net.imglib2.roi.labeling.LabelingType
 
isEmpty() - Method in interface net.imglib2.roi.MaskInterval
Returns true if Predicate.test(T) is known to always return false.
isEmpty() - Method in interface net.imglib2.roi.MaskPredicate
Returns true if Predicate.test(T) is known to always return false.
isEmpty() - Method in interface net.imglib2.roi.RealMaskRealInterval
Returns true if Predicate.test(T) is known to always return false.
isEmpty(Interval) - Static method in class net.imglib2.util.Intervals
Check whether the given interval is empty, that is, the maximum is smaller than the minimum in some dimension.
isEmpty(RealInterval) - Static method in class net.imglib2.util.Intervals
Check whether the given interval is empty, that is, the maximum is smaller than the minimum in some dimension.
isEnqueuToFront() - Method in class net.imglib2.cache.volatiles.CacheHints
Return true if cell requests should be enqueued to the front (most recent requests are handled first) of the respective priority level.
isExclusiveScale(AffineGet) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils
 
isExclusiveScaleAndTranslation(AffineGet) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils
 
isExlusiveTranslation(AffineGet) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils
 
IsGreaterThan<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
IsGreaterThan(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.IsGreaterThan
 
isHorizontal(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Determine whether the given edge is horizontal.
isHSB() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
isIdentity() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
Returns true if either the sequence is empty, or if every transform in the sequence returns true for isIdentity.
isIdentity() - Method in class net.imglib2.realtransform.AffineTransform
 
isIdentity() - Method in class net.imglib2.realtransform.AffineTransform2D
 
isIdentity() - Method in class net.imglib2.realtransform.AffineTransform3D
 
isIdentity() - Method in interface net.imglib2.realtransform.RealTransform
Check if the RealTransform is identity.
isIdentity(AffineGet) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils
 
isIdentity() - Method in class net.imglib2.realtransform.Scale
 
isIdentity() - Method in class net.imglib2.realtransform.Scale2D
 
isIdentity() - Method in class net.imglib2.realtransform.Scale3D
 
isIdentity() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
isIdentity() - Method in class net.imglib2.realtransform.Translation
 
isIdentity() - Method in class net.imglib2.realtransform.Translation2D
 
isIdentity() - Method in class net.imglib2.realtransform.Translation3D
 
isIdentity(Mixed) - Static method in class net.imglib2.view.TransformBuilder
 
isInLowerTail(T) - Method in class net.imglib2.histogram.Histogram1d
Returns true if a given value is mapped to the lower tail of the distribution.
isInLowerTail(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given set of values are mapped to the lower tail of the distribution.
isInLowerTail(int, T) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given value for a given dimension is mapped to the lower tail of the distribution.
isInMiddle(T) - Method in class net.imglib2.histogram.Histogram1d
Returns true if a given value is mapped to the middle of the distribution.
isInMiddle(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given set of values are mapped to the middle of the distribution.
isInMiddle(int, T) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given value for a given dimension is mapped to the middle of the distribution.
isIntegerDivision(RandomAccessibleInterval<?>, RandomAccessibleInterval<?>) - Static method in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
The dimensions of the integral image are always +1 from the integrated image.
isInUpperTail(T) - Method in class net.imglib2.histogram.Histogram1d
Returns true if a given value is mapped to the upper tail of the distribution.
isInUpperTail(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given set of values are mapped to the upper tail of the distribution.
isInUpperTail(int, T) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given value for a given dimension is mapped to the upper tail of the distribution.
isLab() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
IsLessThan<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
IsLessThan(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.IsLessThan
 
isMember(long[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Test to see if an integer position is inside the ellipse.
isNotLastCell - Variable in class net.imglib2.img.cell.CellCursor
Caches cursorOnCells.hasNext().
isNotLastCell - Variable in class net.imglib2.img.cell.CellLocalizingCursor
Caches cursorOnCells.hasNext().
isOne() - Method in interface net.imglib2.algorithm.math.abstractions.OFunction
 
isOne() - Method in class net.imglib2.algorithm.math.execution.NumericSource
 
IsotropicDiffusionTensor<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
IsotropicDiffusionTensor(long[], float) - Constructor for class net.imglib2.algorithm.pde.IsotropicDiffusionTensor
 
isOutOfBounds() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
isOutOfBounds - Variable in class net.imglib2.img.cell.CellRandomAccess
 
isOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
isOutOfBounds - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
isOutOfBounds() - Method in interface net.imglib2.outofbounds.Bounded
True if located out of image bounds.
isOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
isOutOfBounds - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
isOutOfBounds() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
isOutside(T) - Method in class net.imglib2.histogram.Histogram1d
Returns true if a given value is outside the distribution.
isOutside(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given set of values are outside the distribution.
isOutside(int, T) - Method in class net.imglib2.histogram.HistogramNd
Returns true if a given value for a given dimension is outside the distribution.
isPadded - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
isRandomAccessOnly() - Method in interface net.imglib2.algorithm.math.abstractions.RandomAccessOnly
 
isRGB() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
isShutdown() - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
isShutdown() - Method in class net.imglib2.parallel.SequentialExecutorService
 
isSkippingCenter() - Method in class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
 
isSkippingCenter() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
isSkippingCenter() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape
 
isSlicing(Mixed) - Static method in class net.imglib2.view.TransformBuilder
 
isSupported(ImgPlus<?>) - Static method in class net.imglib2.img.display.imagej.ArrayImgToVirtualStack
Indicates if ArrayImgToVirtualStack.wrap(ImgPlus) wrap} supports the image.
isSupported(ImgPlus<?>) - Static method in class net.imglib2.img.display.imagej.CellImgToVirtualStack
Returns true if CellImgToVirtualStack.wrap(ImgPlus) supports the given image.
isSupported(Type<?>) - Static method in class net.imglib2.img.display.imagej.ImageProcessorUtils
Returns true if the given ImgLib2 pixel type is also supported by ImageJ1.
isSupported(ImgPlus<?>) - Static method in class net.imglib2.img.display.imagej.PlanarImgToVirtualStack
Returns true, if PlanarImgToVirtualStack.wrap(ImgPlus) supports the given image.
isTerminated() - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
isTerminated() - Method in class net.imglib2.parallel.SequentialExecutorService
 
isTranslation(Mixed) - Static method in class net.imglib2.view.TransformBuilder
 
isUnbounded() - Method in class net.imglib2.roi.Bounds
 
isValid() - Method in class net.imglib2.algorithm.localextrema.RefinedPeak
 
isValid() - Method in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileBooleanArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
isValid - Variable in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
isValid() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
isValid() - Method in interface net.imglib2.img.basictypeaccess.volatiles.VolatileAccess
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.AbstractStridedUnsafeLongAccess
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
isValid() - Method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil.OwningUnsafe
 
isValid() - Method in class net.imglib2.Volatile
 
isVirtual() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
isWritable() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
isWritable() - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
True if the image is writable.
isZero() - Method in interface net.imglib2.algorithm.math.abstractions.OFunction
 
isZero() - Method in class net.imglib2.algorithm.math.execution.NumericSource
 
isZeroMin(Interval) - Static method in class net.imglib2.view.Views
test whether the source interval starts at (0,0,...,0)
iterable - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
iterable - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
iterable(RandomAccessibleInterval<B>) - Static method in class net.imglib2.roi.Regions
Obtains an IterableRegion whose iteration consists of only the true pixels of a region (instead of all pixels in bounding box).
iterable(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Return an IterableInterval.
IterableInterval<T> - Interface in net.imglib2
An IterableRealInterval whose elements are located at integer coordinates.
IterableIntervalProjector2D<A,B> - Class in net.imglib2.display.projector
A general 2D Projector that uses two dimensions as input to create the 2D result.
IterableIntervalProjector2D(int, int, RandomAccessible<A>, IterableInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.IterableIntervalProjector2D
creates a new 2D projector that samples a plain in the dimensions dimX, dimY.
IterableLine - Class in net.imglib2.roi.geom.integer
An immutable line sampled on integer position.
IterableLine(Localizable, Localizable) - Constructor for class net.imglib2.roi.geom.integer.IterableLine
Instantiates a new line that goes from start to end points.
IterablePair<A,B> - Class in net.imglib2.util
An Iterable which is backed by two other Iterables, whose iteration produces a Pair of objects corresponding to those given by the two respective iterations of the backing Iterables.
IterablePair(Iterable<A>, Iterable<B>) - Constructor for class net.imglib2.util.IterablePair
 
IterableRandomAccessibleFunction<C extends RealType<C>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
A View of the computation defined by an IFunction.
IterableRandomAccessibleFunction(IFunction, Converter<RealType<?>, C>, C, O, Converter<C, O>) - Constructor for class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
IterableRandomAccessibleFunction(IFunction, O) - Constructor for class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
Use a default Converter as defined by Util.genericRealTypeConverter().
IterableRandomAccessibleFunction(IFunction, O, Converter<C, O>) - Constructor for class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
Use a default Converter as defined by Util.genericRealTypeConverter().
IterableRandomAccessibleFunction(IFunction) - Constructor for class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
Use a the same RealType as the first input RandomAccessibleInterval found, and a default Converter as defined by Util.genericRealTypeConverter().
IterableRandomAccessibleFunctionDouble<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
IterableRandomAccessibleFunctionDouble(IFunction, O, Converter<RealType<?>, O>) - Constructor for class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunctionDouble
 
IterableRandomAccessibleFunctionDouble(IFunction, O) - Constructor for class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunctionDouble
Use a default Converter as defined by Util.genericRealTypeConverter().
IterableRandomAccessibleFunctionDouble(IFunction) - Constructor for class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunctionDouble
 
IterableRandomAccessibleInterval<T> - Class in net.imglib2.view
Generates Cursors that iterate a RandomAccessibleInterval in flat order, that is: row by row, plane by plane, cube by cube, ...
IterableRandomAccessibleInterval(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.view.IterableRandomAccessibleInterval
 
IterableRandomAccessibleRegion<T extends BooleanType<T>> - Class in net.imglib2.roi.util
Deprecated.
IterableRandomAccessibleRegion(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
IterableRealInterval<T> - Interface in net.imglib2
f:Rn∈[0,s]→T
IterableRegion<T extends BooleanType<T>> - Interface in net.imglib2.roi
A region that allows to iterate only the pixels contained in the region (instead of all pixels in bounding box).
IterableRegionOfInterest - Interface in net.imglib2.roi
Deprecated.
IterableRegionOnBooleanRAI<T extends BooleanType<T>> - Class in net.imglib2.roi.util
IterableRegionOnBooleanRAI(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
IterableRegionOnBooleanRAI(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
IterableTransformBuilder<T> - Class in net.imglib2.view.iteration
Simplifies View cascades to provide the most efficient Cursor.
IterableTransformBuilder(Interval, RandomAccessible<T>) - Constructor for class net.imglib2.view.iteration.IterableTransformBuilder
Create a new IterableTransformBuilder.
iteratePath(GeneralPathSegmentHandler) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
IterationCode - Interface in net.imglib2.roi.util.iterationcode
Iteration code encodes a bitmask as a set of intervals along dimension 0.
IterationCodeBuilder - Class in net.imglib2.roi.util.iterationcode
Create an IterationCode by accumulating coordinates.
IterationCodeBuilder(int, long) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
IterationCodeCursor - Class in net.imglib2.roi.util.iterationcode
A Cursor<Void> that visits all positions in the bitmask encoded by a given IterationCode.
IterationCodeCursor(IterationCode, long[]) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
IterationCodeCursor(TIntArrayList, long[]) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
IterationCodeCursor(IterationCodeCursor) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
IterationCodeIterator<P extends Positionable & Localizable> - Class in net.imglib2.roi.util.iterationcode
Iterates all positions in the bitmask encoded by a given IterationCode.
IterationCodeIterator(IterationCode, long[], P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeIterator
 
IterationCodeIterator(TIntArrayList, long[], P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeIterator
 
IterationCodeIterator(IterationCodeIterator<?>, P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeIterator
 
IterationCodeListCursor - Class in net.imglib2.roi.util.iterationcode
A Cursor<Void> that visits all positions in the bitmask encoded by a given list of IterationCodes.
IterationCodeListCursor(ArrayList<TIntArrayList>, long[]) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
IterationCodeListCursor(IterationCodeListCursor) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
IterationCodeListIterator<P extends Positionable & Localizable> - Class in net.imglib2.roi.util.iterationcode
Iterates a bitmask that is encoded by a list of IterationCodes.
IterationCodeListIterator(List<TIntArrayList>, long[], P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
 
IterationCodeListIterator(IterationCodeListIterator<?>, P) - Constructor for class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
 
iterationOrder() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsIterableInterval
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsIterableInterval
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsIterableInterval
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsIterableInterval
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsIterableInterval
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsIterableInterval
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
iterationOrder() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsIterableInterval
 
iterationOrder() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
iterationOrder() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
iterationOrder() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
iterationOrder() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
iterationOrder() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
iterationOrder() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
iterationOrder() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
iterationOrder() - Method in class net.imglib2.converter.AbstractConvertedIterableRealInterval
 
iterationOrder() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
iterationOrder() - Method in class net.imglib2.histogram.Histogram1d
 
iterationOrder() - Method in class net.imglib2.histogram.HistogramNd
 
iterationOrder() - Method in class net.imglib2.img.array.ArrayImg
 
iterationOrder() - Method in class net.imglib2.img.cell.AbstractCellImg
 
iterationOrder() - Method in class net.imglib2.img.list.AbstractListImg
 
iterationOrder() - Method in class net.imglib2.img.list.AbstractLongListImg
 
iterationOrder() - Method in class net.imglib2.img.planar.PlanarImg
 
iterationOrder() - Method in class net.imglib2.img.sparse.NtreeImg
 
iterationOrder() - Method in class net.imglib2.img.unsafe.UnsafeImg
 
iterationOrder() - Method in interface net.imglib2.IterableRealInterval
Returns the iteration order of this IterableRealInterval.
iterationOrder() - Method in class net.imglib2.KDTree
 
iterationOrder() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
iterationOrder() - Method in class net.imglib2.PointSampleList
 
iterationOrder() - Method in class net.imglib2.RealPointSampleList
 
iterationOrder() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
iterationOrder() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
iterationOrder() - Method in class net.imglib2.roi.boundary.Boundary
 
iterationOrder() - Method in class net.imglib2.roi.geom.integer.IterableLine
 
iterationOrder() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
iterationOrder() - Method in class net.imglib2.roi.labeling.LabelRegion
 
iterationOrder() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
iterationOrder() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
iterationOrder() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
iterationOrder() - Method in class net.imglib2.roi.util.SamplingIterableInterval
 
iterationOrder() - Method in class net.imglib2.view.IntervalView
 
iterationOrder() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
iterativeInverse(double[], double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
Find the source point that, when pushed through the forward transform, results in the given destination point.
iterator() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
Get an iterator over the pixel locations (Localizable) in this connected component.
iterator() - Method in class net.imglib2.algorithm.componenttree.mser.MserTree
Returns an iterator over all MSERs in the tree.
iterator() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
 
iterator() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponent
Get an iterator over the pixel locations (Localizable) in this connected component.
iterator() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Returns an iterator over all connected components in the tree.
iterator() - Method in class net.imglib2.algorithm.kdtree.KDTreeNodeIterable
 
iterator() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsIterableInterval
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsIterableInterval
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsIterableInterval
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsIterableInterval
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsIterableInterval
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsIterableInterval
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
iterator() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsIterableInterval
 
iterator() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
iterator() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
iterator() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
iterator() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
iterator() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
iterator() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
 
iterator() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
iterator() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
iterator() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
iterator() - Method in class net.imglib2.converter.AbstractConvertedIterableRealInterval
 
iterator() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
iterator() - Method in class net.imglib2.histogram.Histogram1d
 
iterator() - Method in class net.imglib2.histogram.HistogramNd
 
iterator() - Method in class net.imglib2.img.AbstractImg
 
Iterator - Interface in net.imglib2
The Iterator interface provides basic functionality for iterating over a set of elements.
iterator() - Method in class net.imglib2.KDTree
 
iterator() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
iterator() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
iterator() - Method in class net.imglib2.PointSampleList
 
iterator() - Method in class net.imglib2.RealPointSampleList
 
iterator() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
iterator() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
iterator() - Method in class net.imglib2.roi.boundary.Boundary
 
iterator() - Method in class net.imglib2.roi.geom.integer.IterableLine
 
iterator() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
iterator() - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
 
iterator() - Method in class net.imglib2.roi.labeling.LabelingType
Note: the returned iterator reflects the label set at the time this method was called.
iterator() - Method in class net.imglib2.roi.labeling.LabelRegion
 
iterator() - Method in class net.imglib2.roi.labeling.LabelRegions
 
iterator() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
iterator() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
iterator() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
iterator() - Method in class net.imglib2.roi.util.SamplingIterableInterval
 
iterator() - Method in class net.imglib2.util.IterablePair
 
iterator - Variable in class net.imglib2.view.composite.AbstractNumericComposite
 
iterator() - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
iterator() - Method in class net.imglib2.view.IntervalView
 
iterator() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
ITrinaryFunction - Interface in net.imglib2.algorithm.math.abstractions
 
IUnaryFunction - Interface in net.imglib2.algorithm.math.abstractions
 
IVar - Interface in net.imglib2.algorithm.math.abstractions
 

J

jacobian(double[]) - Method in class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform
Returns the jacobian matrix of this transform at the point x.
jacobian(double[]) - Method in interface net.imglib2.realtransform.inverse.DifferentiableRealTransform
Returns the jacobian matrix of this transform at the point x.
jacobian - Variable in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
jacobian(double[]) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
Estimates the jacobian matrix at x of the wrapped RealTransform.
jacobian(double[]) - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
Returns the jacobian matrix of this transform at the point x.
jacobian(double[]) - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
join(int, int) - Method in class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
Join two sets.
join(long, long) - Method in class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
 
join(int, int) - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
Join two sets.
join(long, long) - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
join(long, long) - Method in class net.imglib2.algorithm.util.unionfind.LongHashMapUnionFind
 
join(long, long) - Method in interface net.imglib2.algorithm.util.unionfind.UnionFind
Join two sets represented by root1 and root2
join(List<T>) - Static method in class net.imglib2.concatenate.ConcatenateUtils
Reduce a list of objects by iteratively pre/concatenating neighboring objects if they support it.
jumpFwd(long) - Method in class net.imglib2.AbstractCursor
Highly recommended to override this with a more efficient version.
jumpFwd(long) - Method in class net.imglib2.AbstractCursorInt
Highly recommended to override this with a more efficient version.
jumpFwd(long) - Method in class net.imglib2.AbstractLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.AbstractLocalizingCursorInt
 
jumpFwd(long) - Method in class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
jumpFwd(long) - Method in class net.imglib2.algorithm.region.CircleCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
This dummy method just calls Iterator.fwd() multiple times.
jumpFwd(long) - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
jumpFwd(long) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
jumpFwd(long) - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
This simply turns to multiple calls to RectangleCursor.fwd().
jumpFwd(long) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
jumpFwd(long) - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
jumpFwd(long) - Method in class net.imglib2.converter.read.BiConvertedCursor
 
jumpFwd(long) - Method in class net.imglib2.converter.read.BiConvertedRealCursor
 
jumpFwd(long) - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
jumpFwd(long) - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
jumpFwd(long) - Method in class net.imglib2.img.array.AbstractArrayCursor
 
jumpFwd(long) - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.img.cell.CellCursor
 
jumpFwd(long) - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
jumpFwd(long) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.img.list.ListCursor
 
jumpFwd(long) - Method in class net.imglib2.img.list.ListLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarCursor
 
jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Highly recommended to override this with a more efficient version.
jumpFwd(long) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
jumpFwd(long) - Method in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.iterator.IntervalIterator
 
jumpFwd(long) - Method in interface net.imglib2.Iterator
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
jumpFwd(long) - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
jumpFwd(long) - Method in class net.imglib2.KDTree.KDTreeCursor
 
jumpFwd(long) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
jumpFwd(long) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
jumpFwd(long) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
jumpFwd(long, long[], long[], Interval) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
Jump forward a certain number of steps from the given position.
jumpFwd(long) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
jumpFwd(long) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeIterator
 
jumpFwd(long) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
jumpFwd(long) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
 
jumpFwd(long) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
jumpFwd(long) - Method in class net.imglib2.view.iteration.SlicingCursor
Move steps × forward.
jumpFwd(long) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 

K

k - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
k - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
KDTree<T> - Class in net.imglib2
KDTree to access values at RealLocalizable positions.
KDTree(List<T>, List<L>) - Constructor for class net.imglib2.KDTree
Construct a KDTree from the elements in the given list.
KDTree(IterableRealInterval<T>) - Constructor for class net.imglib2.KDTree
Construct a KDTree from the elements of the given IterableRealInterval.
KDTree.DimComparator<L extends RealLocalizable> - Class in net.imglib2
Compare RealLocalizables by comparing their coordinates in dimension d.
KDTree.KDTreeCursor - Class in net.imglib2
 
KDTree.SamplerNode<T> - Class in net.imglib2
A KDTreeNode that stores it's value as a Sampler.
KDTree.ValueNode<T> - Class in net.imglib2
A KDTreeNode that stores it's value as a reference.
KDTreeCursor(KDTree<T>) - Constructor for class net.imglib2.KDTree.KDTreeCursor
 
KDTreeCursor(KDTree<T>.KDTreeCursor) - Constructor for class net.imglib2.KDTree.KDTreeCursor
 
KDTreeNode<T> - Class in net.imglib2
Abstract base class for nodes in a KDTree.
KDTreeNode(RealLocalizable, int, KDTreeNode<T>, KDTreeNode<T>) - Constructor for class net.imglib2.KDTreeNode
 
KDTreeNode(KDTreeNode<T>) - Constructor for class net.imglib2.KDTreeNode
 
KDTreeNodeIterable<T> - Class in net.imglib2.algorithm.kdtree
 
KDTreeNodeIterable(ArrayList<KDTreeNode<T>>, ArrayList<KDTreeNode<T>>) - Constructor for class net.imglib2.algorithm.kdtree.KDTreeNodeIterable
 
KDTreeRadiusSource<I extends RealType<I>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
KDTreeRadiusSource(O, Converter<RealType<?>, O>, KDTree<I>, double, I, Interval) - Constructor for class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
kDTreeRealPointCollection(KDTree<L>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a RealPointCollection from a KDTree.
kDTreeRealPointCollection(Collection<L>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a KDTree-based RealPointCollection from a collection of points.
KDTreeRealPointCollection<L extends RealLocalizable> - Class in net.imglib2.roi.geom.real
A RealPointCollection which checks if points are contained in the collection by performing a NearestNeighborSearch on the provided KDTree.
KDTreeRealPointCollection(Collection<L>) - Constructor for class net.imglib2.roi.geom.real.KDTreeRealPointCollection
Creates a RealPointCollection with the points in the Collection.
KDTreeRealPointCollection(KDTree<L>) - Constructor for class net.imglib2.roi.geom.real.KDTreeRealPointCollection
Creates a RealPointCollection with the points in the KDTree.
KDTreeSource<I extends RealType<I>> - Class in net.imglib2.algorithm.math
 
KDTreeSource(List<Point>, I, double) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
KDTreeSource(List<Point>, I, double, Object) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
KDTreeSource(List<Point>, I, double, Object, Interval) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
KDTreeSource(List<Point>, List<I>, double) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
KDTreeSource(List<Point>, List<I>, double, Object) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
KDTreeSource(List<Point>, List<I>, double, Object, Interval) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
KDTreeSource(KDTree<I>, double) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
KDTreeSource(KDTree<I>, double, Object) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
KDTreeSource(KDTree<I>, double, Object, Interval) - Constructor for class net.imglib2.algorithm.math.KDTreeSource
 
keepDoGImg - Variable in class net.imglib2.algorithm.dog.DogDetection
 
keepImgFFT() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
Kernel1D - Class in net.imglib2.algorithm.convolution.kernel
Kernel for a one dimensional convolution.
KernelConvolverFactory - Class in net.imglib2.algorithm.convolution.kernel
KernelConvolverFactory(Kernel1D) - Constructor for class net.imglib2.algorithm.convolution.kernel.KernelConvolverFactory
 
kernelFFT() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
KeyBimap<S,T> - Interface in net.imglib2.cache.util
A bidirectional map between key types S and T (source and target).
keymap - Variable in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
KNearestNeighborSearch<T> - Interface in net.imglib2.neighborsearch
k-nearest-neighbor search in an Euclidean space.
KNearestNeighborSearchOnIterableRealInterval<T> - Class in net.imglib2.neighborsearch
k-nearest-neighbor search on IterableRealInterval implemented as linear search.
KNearestNeighborSearchOnIterableRealInterval(IterableRealInterval<T>, int) - Constructor for class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
KNearestNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
Implementation of KNearestNeighborSearch search for kd-trees.
KNearestNeighborSearchOnKDTree(KDTree<T>, int) - Constructor for class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
knownConstant() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
knownConstant() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
knownConstant() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
knownConstant() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
knownConstant() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
knownConstant() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
knownConstant() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
knownConstant() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
knownConstant() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
knownConstant() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
KnownConstant - Enum in net.imglib2.roi
 
knownConstant() - Method in class net.imglib2.roi.mask.integer.DefaultMask
 
knownConstant() - Method in class net.imglib2.roi.mask.integer.DefaultMaskInterval
 
knownConstant() - Method in class net.imglib2.roi.mask.real.DefaultRealMask
 
knownConstant() - Method in class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
 
knownConstant() - Method in interface net.imglib2.roi.MaskPredicate
 
KthElement - Class in net.imglib2.util
TODO
KthElement() - Constructor for class net.imglib2.util.KthElement
 
kthElement(int, int, int, byte[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, byte[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, short[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, short[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, int[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, long[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, long[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, float[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, float[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, double[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, double[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, char[]) - Static method in class net.imglib2.util.KthElement
Partition a subarray of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, char[]) - Static method in class net.imglib2.util.KthElement
Partition an array of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a list of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, List<T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, List<T>) - Static method in class net.imglib2.util.KthElement
Partition a list of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(ListIterator<T>, ListIterator<T>, int, Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist such that the k-th smallest value is at position k, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal.
kthElement(ListIterator<T>, ListIterator<T>, int) - Static method in class net.imglib2.util.KthElement
Partition a sublist such that the k-th smallest value is at position k, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal.
kthElement(int, int, int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a list of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, int, int, List<T>, int[]) - Static method in class net.imglib2.util.KthElement
Partition a sublist of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(int, List<T>, int[]) - Static method in class net.imglib2.util.KthElement
Partition a list of values such that the k-th smallest value is at position k, elements before the k-th are smaller or equal and elements after the k-th are larger or equal.
kthElement(ListIterator<T>, ListIterator<T>, int, int[], Comparator<? super T>) - Static method in class net.imglib2.util.KthElement
Partition a sublist such that the k-th smallest value is at position k, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal.
kthElement(ListIterator<T>, ListIterator<T>, int, int[]) - Static method in class net.imglib2.util.KthElement
Partition a sublist such that the k-th smallest value is at position k, elements before the k-th are smaller or equal, and elements after the k-th are larger or equal.

L

labelAllConnectedComponents(Labeling<T>, RandomAccessibleInterval<BitType>, Iterator<T>) - Static method in class net.imglib2.algorithm.labeling.AllConnectedComponents
Deprecated.
Label all connected components in the given image using an 8-connected structuring element or it's N-dimensional analog (connect if touching along diagonals as well as +/- one element in any direction).
labelAllConnectedComponents(Labeling<T>, RandomAccessibleInterval<BitType>, Iterator<T>, long[][]) - Static method in class net.imglib2.algorithm.labeling.AllConnectedComponents
Deprecated.
Label all connected components in the given image using an arbitrary structuring element.
labelAllConnectedComponents(RandomAccessible<T>, ImgLabeling<L, I>, Iterator<L>, ConnectedComponents.StructuringElement) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponents
Label all connected components in the given input image.
labelAllConnectedComponents(RandomAccessible<T>, ImgLabeling<L, I>, Iterator<L>, ConnectedComponents.StructuringElement, ExecutorService) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponents
Label all connected components in the given input image.
labelAllConnectedComponents(RandomAccessible<T>, RandomAccessibleInterval<L>, ConnectedComponents.StructuringElement) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponents
"Label" all connected components in the given input image.
labelAllConnectedComponents(RandomAccessible<T>, RandomAccessibleInterval<L>, ConnectedComponents.StructuringElement, ExecutorService) - Static method in class net.imglib2.algorithm.labeling.ConnectedComponents
"Label" all connected components in the given input image.
labeling - Variable in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
labeling - Variable in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
Labeling<T extends Comparable<T>> - Interface in net.imglib2.labeling
Deprecated.
LabelingConvertedCursor<I extends IntegerType<I>,T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
LabelingConvertedCursor(Cursor<I>, long[], LabelingMapping<T>) - Constructor for class net.imglib2.labeling.LabelingConvertedCursor
Deprecated.
 
LabelingConvertedRandomAccess<I extends IntegerType<I>,T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
LabelingConvertedRandomAccess(RandomAccess<I>, long[], LabelingMapping<T>) - Constructor for class net.imglib2.labeling.LabelingConvertedRandomAccess
Deprecated.
 
LabelingFactory<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
LabelingFactory() - Constructor for class net.imglib2.labeling.LabelingFactory
Deprecated.
 
LabelingMapping<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
LabelingMapping(IntegerType<?>) - Constructor for class net.imglib2.labeling.LabelingMapping
Deprecated.
 
LabelingMapping<T> - Class in net.imglib2.roi.labeling
The LabelingMapping maps a set of labelings of a pixel to an index value which can be more compactly stored than the set of labelings.
LabelingMapping(IntegerType<?>) - Constructor for class net.imglib2.roi.labeling.LabelingMapping
Create a new LabelingMapping that maps label sets to the given integral indexType.
LabelingMapping.InternedList<T1 extends Comparable<T1>> - Class in net.imglib2.labeling
Deprecated.
 
LabelingMapping.InternedSet<T> - Class in net.imglib2.roi.labeling
Canonical representative for a label set.
LabelingMapping.SerialisationAccess<T> - Class in net.imglib2.roi.labeling
Deprecated.
Use LabelingMapping.getLabelSets() or LabelingMapping.setLabelSets(List) instead.

Internals. Can be derived for implementing de/serialisation of the LabelingMapping.

LabelingOutOfBoundsRandomAccess<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
LabelingOutOfBoundsRandomAccess(I) - Constructor for class net.imglib2.labeling.LabelingOutOfBoundsRandomAccess
Deprecated.
 
LabelingOutOfBoundsRandomAccessFactory<T extends Comparable<T>,F extends Labeling<T>> - Class in net.imglib2.labeling
Deprecated.
LabelingOutOfBoundsRandomAccessFactory() - Constructor for class net.imglib2.labeling.LabelingOutOfBoundsRandomAccessFactory
Deprecated.
 
LabelingROIStrategy<T extends Comparable<T>,L extends Labeling<T>> - Interface in net.imglib2.labeling
Deprecated.
LabelingROIStrategyFactory<T extends Comparable<T>> - Interface in net.imglib2.labeling
Deprecated.
Labelings - Class in net.imglib2.roi.labeling
Utility class for labeling tasks.
Labelings() - Constructor for class net.imglib2.roi.labeling.Labelings
 
LabelingType<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
LabelingType(IntegerType<?>, LabelingMapping<T>, long[]) - Constructor for class net.imglib2.labeling.LabelingType
Deprecated.
Constructor for mirroring state with another labeling
LabelingType(IntegerType<?>, LabelingMapping<T>) - Constructor for class net.imglib2.labeling.LabelingType
Deprecated.
 
LabelingType(List<T>) - Constructor for class net.imglib2.labeling.LabelingType
Deprecated.
 
LabelingType(T) - Constructor for class net.imglib2.labeling.LabelingType
Deprecated.
 
LabelingType() - Constructor for class net.imglib2.labeling.LabelingType
Deprecated.
 
LabelingType<T> - Class in net.imglib2.roi.labeling
The LabelingType represents a labeling of a pixel with zero or more labels of type T.
LabelingType(IntegerType<?>, LabelingMapping<T>, LabelingType.ModCount) - Constructor for class net.imglib2.roi.labeling.LabelingType
Constructor for mirroring state with another labeling
LabelingType.ModCount - Class in net.imglib2.roi.labeling
 
LabelingView<L extends Comparable<L>> - Class in net.imglib2.labeling
Deprecated.
LabelingView(RandomAccessibleInterval<LabelingType<L>>, LabelingFactory<L>) - Constructor for class net.imglib2.labeling.LabelingView
Deprecated.
 
LabelRegion<T> - Class in net.imglib2.roi.labeling
Present pixels of a given label in a ImgLabeling as a PositionableIterableRegion.
LabelRegion(LabelRegions<T>, LabelRegions.LabelRegionProperties, T) - Constructor for class net.imglib2.roi.labeling.LabelRegion
 
LabelRegion(LabelRegion<T>) - Constructor for class net.imglib2.roi.labeling.LabelRegion
Copy constructor.
LabelRegionCursor - Class in net.imglib2.roi.labeling
 
LabelRegionCursor(ArrayList<TIntArrayList>, long[]) - Constructor for class net.imglib2.roi.labeling.LabelRegionCursor
 
LabelRegionCursor(LabelRegionCursor) - Constructor for class net.imglib2.roi.labeling.LabelRegionCursor
 
LabelRegionRandomAccess<T> - Class in net.imglib2.roi.labeling
 
LabelRegionRandomAccess(LabelRegion<T>, long[]) - Constructor for class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
LabelRegionRandomAccess(LabelRegion<T>, Interval, long[]) - Constructor for class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
LabelRegionRandomAccess(LabelRegionRandomAccess<T>) - Constructor for class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
LabelRegions<T> - Class in net.imglib2.roi.labeling
Provides LabelRegions for all labels of a labeling.
LabelRegions(RandomAccessibleInterval<LabelingType<T>>) - Constructor for class net.imglib2.roi.labeling.LabelRegions
 
labelsAtIndex(int) - Method in class net.imglib2.roi.labeling.LabelingMapping
Returns the (unmodifiable) set of labels for the given index value.
LanczosInterpolator<T extends RealType<T>> - Class in net.imglib2.interpolation.randomaccess
n-dimensional double-based Lanczos Interpolation
LanczosInterpolator(RandomAccessible<T>, int, boolean, double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolator
Creates a new Lanczos-interpolation
LanczosInterpolator(LanczosInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
LanczosInterpolatorFactory<T extends RealType<T>> - Class in net.imglib2.interpolation.randomaccess
TODO
LanczosInterpolatorFactory(int, boolean) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Creates a new LanczosInterpolatorFactory using the Lanczos (sinc) interpolation in a certain window
LanczosInterpolatorFactory(int, double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Creates a new LanczosInterpolatorFactory using the Lanczos (sinc) interpolation in a certain window
LanczosInterpolatorFactory(double, double) - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Creates a new LanczosInterpolatorFactory using the Lanczos (sinc) interpolation in a certain window
LanczosInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Creates a new LanczosInterpolatorFactory with standard parameters (do clipping, alpha=3)
largestContainedInterval(RealInterval) - Static method in class net.imglib2.util.Intervals
Compute the largest Interval that is contained in the specified RealInterval.
lastIndex - Variable in class net.imglib2.img.array.AbstractArrayCursor
Last index
lastIndex - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Last index.
lastIndex - Variable in class net.imglib2.img.planar.PlanarCursor
 
lastIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
lastIndex - Variable in class net.imglib2.img.unsafe.AbstractUnsafeCursor
Last index
lastIndex - Variable in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
Last index.
lastIndex - Variable in class net.imglib2.iterator.IntervalIterator
 
lastIndex - Variable in class net.imglib2.PointSampleList
 
lastIndex - Variable in class net.imglib2.RealPointSampleList
 
lastIndexInCell - Variable in class net.imglib2.img.cell.CellCursor
 
lastIndexInCell - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
lastIndexOf(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
lastSliceIndex - Variable in class net.imglib2.img.planar.PlanarCursor
 
lastSliceIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
lastSliceIndex - Variable in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
Lazy - Class in net.imglib2.algorithm.lazy
Convenience methods to create lazy evaluated cached cell images with consumers.
LazyCellImg<T extends NativeType<T>,A> - Class in net.imglib2.img.cell
A AbstractCellImg that obtains its Cells lazily when they are accessed.
LazyCellImg(CellGrid, T, LazyCellImg.Get<Cell<A>>) - Constructor for class net.imglib2.img.cell.LazyCellImg
 
LazyCellImg(CellGrid, Fraction, LazyCellImg.Get<Cell<A>>) - Constructor for class net.imglib2.img.cell.LazyCellImg
 
LazyCellImg.Get<T> - Interface in net.imglib2.img.cell
 
LazyCellImg.LazyCells<T> - Class in net.imglib2.img.cell
 
LazyCellImgFactory(int, RandomAccessibleInterval<T>, int[], S) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory.LazyCellImgFactory
 
LazyCellImgFactory(BSplineDecomposition<T, S>, Interval, int[], S) - Constructor for class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory.LazyCellImgFactory
 
LazyCells(long[], LazyCellImg.Get<T>) - Constructor for class net.imglib2.img.cell.LazyCellImg.LazyCells
 
lazyStack(List<String>, CacheLoader<String, Img<T>>) - Static method in class net.imglib2.img.io.Load
Return a CachedCellImg representation of the ordered list of file paths, with each file path pointing to an image that can be loaded with the CacheLoader.
lazyStack(String[]) - Static method in class net.imglib2.img.io.Load
Convenient method that invokes Load.lazyStack(List, CacheLoader) with a cache-enabled IJLoader.
lazyStack(List<String>) - Static method in class net.imglib2.img.io.Load
Convenient method that invokes Load.lazyStack(List, CacheLoader) with a cache-enabled IJLoader.
ldu(int) - Static method in class net.imglib2.util.Util
(Hopefully) fast floor log2 of an unsigned(!) integer value.
left - Variable in class net.imglib2.KDTreeNode
Left child of this node.
length - Variable in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
length(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
get the length of a.
length - Variable in class net.imglib2.view.composite.AbstractNumericComposite
 
lerp(double[], double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = ( 1 - t ) * a + t * b, where a, b are vectors and t is scalar.
lessThan(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
LessThan - Class in net.imglib2.algorithm.math
 
LessThan(Object, Object) - Constructor for class net.imglib2.algorithm.math.LessThan
 
let(String, Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
let(Object[], Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
let(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Let - Class in net.imglib2.algorithm.math
 
Let(String, Object, Object) - Constructor for class net.imglib2.algorithm.math.Let
 
Let(Object[], Object) - Constructor for class net.imglib2.algorithm.math.Let
 
Let(Object...) - Constructor for class net.imglib2.algorithm.math.Let
 
LetBinding<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LetBinding(O, String, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LetBinding
 
LetBinding(O, String, Map<String, LetBinding<O>>, IFunction, IFunction, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Constructor for class net.imglib2.algorithm.math.execution.LetBinding
 
LevenbergMarquardtSolver - Class in net.imglib2.algorithm.localization
A plain implementation of Levenberg-Marquardt least-square curve fitting algorithm.
LevenbergMarquardtSolver(int, double, double) - Constructor for class net.imglib2.algorithm.localization.LevenbergMarquardtSolver
Creates a new Levenberg-Marquardt solver for least-square curve fitting problems.
LevenbergMarquardtSolver() - Constructor for class net.imglib2.algorithm.localization.LevenbergMarquardtSolver
Creates a new Levenberg-Marquardt solver for least-square curve fitting problems, with default parameters set to: lambda = 1e-3 epsilon = 1e-1 maxIter = 300
Life - Class in net.imglib2.algorithm.morphology.table2d
Applies the interaction rules from the Game of Life, an example of a cellular automaton.
Life() - Constructor for class net.imglib2.algorithm.morphology.table2d.Life
 
life(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Life
 
life(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Life
 
LinAlgHelpers - Class in net.imglib2.util
Basic vector and matrix operations implemented on double[] and double[][].
LinAlgHelpers() - Constructor for class net.imglib2.util.LinAlgHelpers
 
line(RealLocalizable, RealLocalizable) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritableLine from two RealLocalizable points.
line(double[], double[], boolean) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritableLine from two double[] points.
Line - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines a line defined in n-d space.
LinearRange - Interface in net.imglib2.display
 
LinearRealRandomAccessibleStackInterpolator<T extends NumericType<T>> - Class in net.imglib2.interpolation.stack
A linear interpolator for stacks of RealRandomAccessibles.
LinearRealRandomAccessibleStackInterpolator(RealRandomAccessible<T>[]) - Constructor for class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
LinearRealRandomAccessibleStackInterpolator(List<RealRandomAccessible<T>>) - Constructor for class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
LinearRealRandomAccessibleStackInterpolator(LinearRealRandomAccessibleStackInterpolator<T>) - Constructor for class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
LinearRealRandomAccessibleStackInterpolatorFactory<T extends NumericType<T>,F extends List<RealRandomAccessible<T>>> - Class in net.imglib2.interpolation.stack
 
LinearRealRandomAccessibleStackInterpolatorFactory() - Constructor for class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolatorFactory
 
lineContains(double[], double[], RealLocalizable, int) - Static method in class net.imglib2.roi.geom.GeomMaths
Tests if the point given point is on a line.
LineConvolution<T> - Class in net.imglib2.algorithm.convolution
This class can be used to implement a separable convolution.
LineConvolution(LineConvolverFactory<? super T>, int) - Constructor for class net.imglib2.algorithm.convolution.LineConvolution
 
LineConvolverFactory<T> - Interface in net.imglib2.algorithm.convolution
The interesting part of a separable convolution is how one line of the image is convolved.
LineProcessor(Runnable, Positionable, long, int) - Constructor for class net.imglib2.loops.LoopUtils.LineProcessor
 
LineRegionOfInterest - Class in net.imglib2.roi
Deprecated.
LineRegionOfInterest(double[], double[]) - Constructor for class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
lineTo(double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
lineTo(double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler
Deprecated.
 
linkedType - Variable in class net.imglib2.img.AbstractNativeImg
 
linkedType - Variable in class net.imglib2.img.AbstractNativeLongAccessImg
 
list(RandomAccessibleInterval<T>, Function<T, E>) - Static method in class net.imglib2.util.FlatCollections
listAtIndex(int) - Method in class net.imglib2.labeling.LabelingMapping
Deprecated.
 
ListCursor<T> - Class in net.imglib2.img.list
ListCursor(ListCursor<T>) - Constructor for class net.imglib2.img.list.ListCursor
 
ListCursor(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListCursor
 
ListImg<T> - Class in net.imglib2.img.list
This Img stores an image in a single linear ArrayList.
ListImg(long[], T) - Constructor for class net.imglib2.img.list.ListImg
 
ListImg(Collection<T>, long...) - Constructor for class net.imglib2.img.list.ListImg
 
ListImgFactory<T> - Class in net.imglib2.img.list
ImgFactory for ListImg of any type T.
ListImgFactory(T) - Constructor for class net.imglib2.img.list.ListImgFactory
 
ListImgFactory() - Constructor for class net.imglib2.img.list.ListImgFactory
Deprecated.
listIterator() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
listIterator(int) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
ListLocalizingCursor<T> - Class in net.imglib2.img.list
Localizing Cursor on a ListImg.
ListLocalizingCursor(ListLocalizingCursor<T>) - Constructor for class net.imglib2.img.list.ListLocalizingCursor
 
ListLocalizingCursor(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListLocalizingCursor
 
ListRandomAccess<T> - Class in net.imglib2.img.list
ListRandomAccess(ListRandomAccess<T>) - Constructor for class net.imglib2.img.list.ListRandomAccess
 
ListRandomAccess(AbstractListImg<T>) - Constructor for class net.imglib2.img.list.ListRandomAccess
 
listsByIndex - Variable in class net.imglib2.labeling.LabelingMapping
Deprecated.
 
ListUtils - Class in net.imglib2.loops
 
ListUtils() - Constructor for class net.imglib2.loops.ListUtils
 
load(SingleCellArrayImg<T, ?>) - Method in class net.imglib2.algorithm.lazy.Caches.RandomAccessibleLoader
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.ByteArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.CharArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyByteArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyCharArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyDoubleArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyFloatArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyIntArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyLongArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyShortArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyVolatileByteArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyVolatileCharArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyVolatileDoubleArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyVolatileFloatArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyVolatileIntArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyVolatileLongArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DirtyVolatileShortArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.DoubleArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.FloatArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.IntArrayType
 
load(ByteBuffer, int) - Method in interface net.imglib2.cache.img.AccessIo
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.LongArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.ShortArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.VolatileByteArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.VolatileCharArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.VolatileDoubleArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.VolatileFloatArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.VolatileIntArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.VolatileLongArrayType
 
load(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.VolatileShortArrayType
 
load(SingleCellArrayImg<T, ?>) - Method in interface net.imglib2.cache.img.CellLoader
Fill the specified cell with data.
Load - Class in net.imglib2.img.io
 
Load() - Constructor for class net.imglib2.img.io.Load
 
loadData(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractByteArrayIo
 
loadData(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractCharArrayIo
 
loadData(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractDoubleArrayIo
 
loadData(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractFloatArrayIo
 
loadData(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractIntArrayIo
 
loadData(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractLongArrayIo
 
loadData(ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractShortArrayIo
 
LoadedCellCacheLoader<T extends NativeType<T>,A extends ArrayDataAccess<A>> - Class in net.imglib2.cache.img
A CacheLoader that produces cells of ArrayDataAccess type A and uses a CellLoader to populate them with data.
LoadedCellCacheLoader(CellGrid, T, A, LoadedCellCacheLoader.ArrayDataAccessWrapper<A, ?>, CellLoader<T>) - Constructor for class net.imglib2.cache.img.LoadedCellCacheLoader
 
LoadedCellCacheLoader.ArrayDataAccessWrapper<A extends ArrayDataAccess<A>,W extends ArrayDataAccess<W>> - Interface in net.imglib2.cache.img
Wraps an ArrayDataAccess of type A as another ArrayDataAccess.
LoaderCache<K,V> - Interface in net.imglib2.cache
 
LoaderCacheAsCacheAdapter<K,V> - Class in net.imglib2.cache.util
Wraps a LoaderCache<K,V> as a Cache<K,V>.
LoaderCacheAsCacheAdapter(LoaderCache<K, V>, CacheLoader<K, V>) - Constructor for class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
LoaderCacheKeyAdapter<K,L,V,C extends LoaderCache<L,V>> - Class in net.imglib2.cache.util
 
LoaderCacheKeyAdapter(C, KeyBimap<K, L>) - Constructor for class net.imglib2.cache.util.LoaderCacheKeyAdapter
 
LoaderRemoverCache<K,V,D> - Interface in net.imglib2.cache
 
LoaderRemoverCacheAsLoaderCacheAdapter<K,V,D> - Class in net.imglib2.cache.util
Wraps a LoaderRemoverCache<K,V> as a LoaderCache<K,V>.
LoaderRemoverCacheAsLoaderCacheAdapter(LoaderRemoverCache<K, V, D>, CacheRemover<K, V, D>) - Constructor for class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
LoaderRemoverCacheAsRemoverCacheAdapter<K,V,D> - Class in net.imglib2.cache.util
Wraps a LoaderRemoverCache<K,V> as a RemoverCache<K,V>.
LoaderRemoverCacheAsRemoverCacheAdapter(LoaderRemoverCache<K, V, D>, CacheLoader<K, V>) - Constructor for class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
LoaderRemoverCacheKeyAdapter<K,L,V,D,C extends LoaderRemoverCache<L,V,D>> - Class in net.imglib2.cache.util
 
LoaderRemoverCacheKeyAdapter(C, KeyBimap<K, L>) - Constructor for class net.imglib2.cache.util.LoaderRemoverCacheKeyAdapter
 
LoadingStrategy - Enum in net.imglib2.cache.volatiles
Describes how the cache processes requests for entries with missing data.
LocalCursor(RandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
LocalCursor(DiamondNeighborhood<T>.LocalCursor) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
LocalCursor(RandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
LocalCursor(DiamondTipsNeighborhood<T>.LocalCursor) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
LocalCursor(RandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
LocalCursor(HorizontalLineNeighborhood<T>.LocalCursor) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
LocalCursor(RandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
LocalCursor(HyperSphereNeighborhood<T>.LocalCursor) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
LocalCursor(RandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
LocalCursor(RectangleNeighborhood<T>.LocalCursor) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
LocalCursor(RandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
LocalCursor(RectangleNeighborhoodSkipCenter<T>.LocalCursor) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
LocalExtrema - Class in net.imglib2.algorithm.localextrema
LocalExtrema() - Constructor for class net.imglib2.algorithm.localextrema.LocalExtrema
 
LocalExtrema.LocalNeighborhoodCheck<P,T> - Interface in net.imglib2.algorithm.localextrema
A local extremum check.
LocalExtrema.MaximumCheck<T extends Comparable<T>> - Class in net.imglib2.algorithm.localextrema
A LocalExtrema.LocalNeighborhoodCheck to test whether a pixel is a local maximum.
LocalExtrema.MinimumCheck<T extends Comparable<T>> - Class in net.imglib2.algorithm.localextrema
A LocalExtrema.LocalNeighborhoodCheck to test whether a pixel is a local minimum.
Localizable - Interface in net.imglib2
The Localizable interface can localize itself in an n-dimensional discrete space.
Localizables - Class in net.imglib2.util
 
Localizables() - Constructor for class net.imglib2.util.Localizables
 
LocalizationUtils - Class in net.imglib2.algorithm.localization
A collection of utility methods for localization algorithms.
LocalizationUtils() - Constructor for class net.imglib2.algorithm.localization.LocalizationUtils
 
localize(float[]) - Method in class net.imglib2.AbstractCursor
 
localize(double[]) - Method in class net.imglib2.AbstractCursor
 
localize(int[]) - Method in class net.imglib2.AbstractCursor
 
localize(float[]) - Method in class net.imglib2.AbstractCursorInt
 
localize(double[]) - Method in class net.imglib2.AbstractCursorInt
 
localize(long[]) - Method in class net.imglib2.AbstractCursorInt
 
localize(float[]) - Method in class net.imglib2.AbstractLocalizable
 
localize(double[]) - Method in class net.imglib2.AbstractLocalizable
 
localize(int[]) - Method in class net.imglib2.AbstractLocalizable
 
localize(long[]) - Method in class net.imglib2.AbstractLocalizable
 
localize(float[]) - Method in class net.imglib2.AbstractLocalizableInt
 
localize(double[]) - Method in class net.imglib2.AbstractLocalizableInt
 
localize(int[]) - Method in class net.imglib2.AbstractLocalizableInt
 
localize(long[]) - Method in class net.imglib2.AbstractLocalizableInt
 
localize(float[]) - Method in class net.imglib2.AbstractRealLocalizable
 
localize(double[]) - Method in class net.imglib2.AbstractRealLocalizable
 
localize(int[]) - Method in class net.imglib2.AbstractWrappedLocalizable
 
localize(long[]) - Method in class net.imglib2.AbstractWrappedLocalizable
 
localize(float[]) - Method in class net.imglib2.AbstractWrappedLocalizable
 
localize(double[]) - Method in class net.imglib2.AbstractWrappedLocalizable
 
localize(int[]) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
localize(long[]) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
localize(long[]) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
localize(int[]) - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
localize(long[]) - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
localize(long[]) - Method in class net.imglib2.algorithm.math.execution.FunctionCursor
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
localize(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
localize(long[]) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
localize(float[]) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
localize(double[]) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
localize(int[]) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
localize(float[]) - Method in class net.imglib2.algorithm.region.CircleCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.region.CircleCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.region.CircleCursor
 
localize(long[]) - Method in class net.imglib2.algorithm.region.CircleCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
localize(long[]) - Method in class net.imglib2.algorithm.region.EllipseCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
localize(long[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
localize(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
localize(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
localize(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
localize(int[]) - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
localize(float[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
localize(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
localize(int[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
localize(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
localize(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
localize(float[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
localize(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
localize(int[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
localize(int[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
localize(long[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedCursor
 
localize(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
localize(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
localize(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
localize(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
localize(int[]) - Method in class net.imglib2.img.array.AbstractArrayCursor
 
localize(long[]) - Method in class net.imglib2.img.cell.CellCursor
 
localize(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
localize(int[]) - Method in class net.imglib2.img.list.ListCursor
 
localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor
 
localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor1D
 
localize(int[]) - Method in class net.imglib2.img.planar.PlanarCursor2D
 
localize(int[]) - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Write the current position into the passed array.
localize(float[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
localize(double[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
localize(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
localize(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
localize(int[]) - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
localize(long[]) - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
localize(float[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
localize(double[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
localize(long[]) - Method in class net.imglib2.iterator.IntervalIterator
 
localize(int[]) - Method in class net.imglib2.iterator.IntervalIterator
 
localize(float[]) - Method in class net.imglib2.iterator.IntervalIterator
 
localize(double[]) - Method in class net.imglib2.iterator.IntervalIterator
 
localize(float[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
localize(double[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
localize(int[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
localize(long[]) - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
localize(long[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
localize(int[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
localize(double[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
localize(float[]) - Method in class net.imglib2.iterator.ZeroMinIntervalIterator
 
localize(float[]) - Method in class net.imglib2.KDTree.KDTreeCursor
 
localize(double[]) - Method in class net.imglib2.KDTree.KDTreeCursor
 
localize(float[]) - Method in class net.imglib2.KDTreeNode
 
localize(double[]) - Method in class net.imglib2.KDTreeNode
 
localize(int[]) - Method in interface net.imglib2.Localizable
Write the current position into the passed array.
localize(long[]) - Method in interface net.imglib2.Localizable
Write the current position into the passed array.
localize(Positionable) - Method in interface net.imglib2.Localizable
Write the current position into the passed Positionable.
localize(float[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
localize(double[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
localize(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
localize(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
localize(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
localize(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
localize(float[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
localize(double[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
localize(int[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
localize(long[]) - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
localize(float[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
localize(double[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
localize(float[]) - Method in interface net.imglib2.RealLocalizable
Write the current position into the passed array.
localize(double[]) - Method in interface net.imglib2.RealLocalizable
Write the current position into the passed array.
localize(RealPositionable) - Method in interface net.imglib2.RealLocalizable
Write the current position into the passed RealPositionable.
localize(float[]) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
localize(double[]) - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
localize(float[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
localize(double[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
localize(float[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
localize(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
localize(int[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
localize(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
localize(float[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
localize(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
localize(long[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
localize(int[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
localize(long[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
localize(float[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
localize(double[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
localize(float[]) - Method in class net.imglib2.roi.util.OffsetLocalizable
 
localize(double[]) - Method in class net.imglib2.roi.util.OffsetLocalizable
 
localize(int[]) - Method in class net.imglib2.roi.util.OffsetLocalizable
 
localize(long[]) - Method in class net.imglib2.roi.util.OffsetLocalizable
 
localize(float[]) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
localize(double[]) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
localize(int[]) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
localize(long[]) - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
localize(float[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
localize(double[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
localize(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.iteration.SlicingCursor
Write the current position into the passed array.
localize(long[]) - Method in class net.imglib2.view.iteration.SlicingCursor
Write the current position into the passed array.
localize(float[]) - Method in class net.imglib2.view.iteration.SlicingCursor
Write the current position into the passed array.
localize(double[]) - Method in class net.imglib2.view.iteration.SlicingCursor
Write the current position into the passed array.
localize(float[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
localize(double[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
localize(int[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
localize(long[]) - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
localize(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
localize(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
localize(float[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
localize(double[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
localize(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
localize(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
localize(float[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
localize(double[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
localize(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
localize(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
localize(float[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
localize(double[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
localize(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
localize(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
localize(float[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
localize(double[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
localize(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
localize(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
localize(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
localize(float[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
localize(double[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
localizingCursor() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsIterableInterval
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsIterableInterval
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsIterableInterval
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsIterableInterval
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsIterableInterval
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsIterableInterval
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
localizingCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsIterableInterval
 
localizingCursor() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
localizingCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
localizingCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
localizingCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
localizingCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
localizingCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
 
localizingCursor() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
localizingCursor() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
localizingCursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
localizingCursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRealInterval
 
localizingCursor() - Method in class net.imglib2.converter.read.BiConvertedIterableInterval
Creates a localizing Cursor for sourceA only because this will be used for localization.
localizingCursor() - Method in class net.imglib2.converter.read.BiConvertedIterableRealInterval
 
localizingCursor() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
 
localizingCursor() - Method in class net.imglib2.converter.read.ConvertedIterableRealInterval
 
localizingCursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
 
localizingCursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
localizingCursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRealInterval
 
localizingCursor() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
localizingCursor() - Method in class net.imglib2.histogram.Histogram1d
 
localizingCursor() - Method in class net.imglib2.histogram.HistogramNd
 
localizingCursor() - Method in class net.imglib2.img.array.ArrayImg
 
localizingCursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
Create a Cursor to iterate over the given Interval.
localizingCursor() - Method in class net.imglib2.img.cell.AbstractCellImg
 
localizingCursor() - Method in class net.imglib2.img.ImgView
 
localizingCursor(Interval) - Method in class net.imglib2.img.ImgView
 
localizingCursor() - Method in class net.imglib2.img.list.AbstractListImg
 
localizingCursor() - Method in class net.imglib2.img.list.AbstractLongListImg
 
localizingCursor() - Method in class net.imglib2.img.planar.PlanarImg
 
localizingCursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Create a Cursor to iterate over the given Interval.
localizingCursor() - Method in class net.imglib2.img.sparse.NtreeImg
 
localizingCursor() - Method in class net.imglib2.img.unsafe.UnsafeImg
 
localizingCursor(Interval) - Method in class net.imglib2.img.unsafe.UnsafeImg
Create a Cursor to iterate over the given Interval.
localizingCursor() - Method in interface net.imglib2.IterableInterval
 
localizingCursor() - Method in interface net.imglib2.IterableRealInterval
Returns a RealLocalizable Iterator that calculates its location at each iteration step.
localizingCursor() - Method in class net.imglib2.KDTree
 
localizingCursor() - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
localizingCursor(Interval) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
localizingCursor() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
localizingCursor(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
localizingCursor() - Method in class net.imglib2.PointSampleList
 
localizingCursor() - Method in class net.imglib2.RealPointSampleList
 
localizingCursor() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
localizingCursor() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
localizingCursor() - Method in class net.imglib2.roi.boundary.Boundary
 
localizingCursor() - Method in class net.imglib2.roi.geom.integer.IterableLine
 
localizingCursor() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
localizingCursor(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
 
localizingCursor() - Method in class net.imglib2.roi.labeling.LabelRegion
 
localizingCursor() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
localizingCursor() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
localizingCursor() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
localizingCursor() - Method in class net.imglib2.roi.util.SamplingIterableInterval
 
localizingCursor() - Method in class net.imglib2.view.IntervalView
 
localizingCursor() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
localizingCursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Create a Cursor to iterate over the given Interval.
LocalizingIntervalIterator - Class in net.imglib2.iterator
Use this class to iterate a virtual Interval in flat order, that is: row by row, plane by plane, cube by cube, ...
LocalizingIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.LocalizingIntervalIterator
 
LocalizingZeroMinIntervalIterator - Class in net.imglib2.iterator
Use this class to iterate a virtual rectangular Interval whose min coordinates are at 0n in flat order, that is: row by row, plane by plane, cube by cube, ...
LocalizingZeroMinIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
LocalizingZeroMinIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
LocalizingZeroMinIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
LocalNeighborhood<T> - Class in net.imglib2.algorithm.region.localneighborhood.old
Deprecated.
LocalNeighborhood(RandomAccessible<T>, Localizable) - Constructor for class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
LocalNeighborhood2<T> - Class in net.imglib2.algorithm.region.localneighborhood.old
Deprecated.
LocalNeighborhood2(RandomAccessible<T>, Localizable) - Constructor for class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
LocalNeighborhoodCursor<T> - Class in net.imglib2.algorithm.fft
Deprecated. 
LocalNeighborhoodCursor(RandomAccess<T>, long) - Constructor for class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
LocalNeighborhoodCursor<T> - Class in net.imglib2.algorithm.region.localneighborhood.old
Deprecated.
LocalNeighborhoodCursor(RandomAccessible<T>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
Create new LocalNeighborhoodCursor on a RandomAccessible at a certain location.
LocalNeighborhoodCursor(RandomAccessible<T>, Localizable) - Constructor for class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
Create new LocalNeighborhoodCursor on a RandomAccessible at a certain location.
LocalNeighborhoodCursor(LocalNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
LocalNeighborhoodCursor2<T> - Class in net.imglib2.algorithm.region.localneighborhood.old
Deprecated.
LocalNeighborhoodCursor2(RandomAccess<T>, long[], long) - Constructor for class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
LocalNeighborhoodCursor2(RandomAccess<T>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
LocalNeighborhoodCursor2(LocalNeighborhoodCursor2<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
locationsEqual(Localizable, Localizable) - Static method in class net.imglib2.util.Util
Determines whether the two Localizable objects have the same position, with long precision.
locationsEqual(RealLocalizable, RealLocalizable) - Static method in class net.imglib2.util.Util
Determines whether the two RealLocalizable objects have the same position, with double precision.
log(Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Log - Class in net.imglib2.algorithm.math
 
Log(Object) - Constructor for class net.imglib2.algorithm.math.Log
 
log2(double) - Static method in class net.imglib2.util.Util
 
Logarithm<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
Doesn't use NumericType math because it lacks the log function.
Logarithm(O, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Logarithm
 
logarithm(Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
logger - Static variable in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
logger - Static variable in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
LogicalAnd<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LogicalAnd(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LogicalAnd
 
LogicalAndBoolean<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LogicalAndBoolean(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LogicalAndBoolean
 
LogicalNot<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LogicalNot(O, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LogicalNot
 
LogicalNotBoolean<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LogicalNotBoolean(O, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LogicalNotBoolean
 
LogicalOr<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LogicalOr(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LogicalOr
 
LogicalOrBoolean<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LogicalOrBoolean(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LogicalOrBoolean
 
LogicalXor<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LogicalXor(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LogicalXor
 
LogicalXorBoolean<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
LogicalXorBoolean(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.LogicalXorBoolean
 
LONG(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
LONG(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
long2int(long[]) - Static method in class net.imglib2.util.Util
 
LongAccess - Interface in net.imglib2.img.basictypeaccess
TODO
LongAccessProxy<T extends GenericLongType<T>> - Class in net.imglib2.img.io.proxyaccess
Proxy access over any GenericLongType container.
LongAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.LongAccessProxy
 
LongArray - Class in net.imglib2.img.basictypeaccess.array
 
LongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.LongArray
 
LongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.LongArray
 
longArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
LongArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.LongArrayType
 
longCollection(IterableInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps an IntegerType iterable image as a collection.
LongHashMapUnionFind - Class in net.imglib2.algorithm.util.unionfind
 
LongHashMapUnionFind() - Constructor for class net.imglib2.algorithm.util.unionfind.LongHashMapUnionFind
 
LongHashMapUnionFind(TLongLongHashMap, int, LongBinaryOperator) - Constructor for class net.imglib2.algorithm.util.unionfind.LongHashMapUnionFind
 
longList(RandomAccessibleInterval<? extends IntegerType<?>>) - Static method in class net.imglib2.util.FlatCollections
Wraps an IntegerType random-accessible image as a list.
LongListCursor(AbstractLongListImg<T>.LongListCursor) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
LongListCursor() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
LongListLocalizingCursor(AbstractLongListImg<T>.LongListLocalizingCursor) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
LongListLocalizingCursor() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
LongListRandomAccess(AbstractLongListImg<T>.LongListRandomAccess) - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
LongListRandomAccess() - Constructor for class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
LongLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
LongLongAccessType - Class in net.imglib2.type.numeric.integer
 
LongLongAccessType(NativeLongAccessImg<?, ? extends LongLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.LongLongAccessType
 
LongLongAccessType(LongLongAccess) - Constructor for class net.imglib2.type.numeric.integer.LongLongAccessType
 
LongLongAccessType(long) - Constructor for class net.imglib2.type.numeric.integer.LongLongAccessType
 
LongLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.LongLongAccessType
 
LongLongAccessTypeLongTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
LongLongAccessTypeLongTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.LongLongAccessTypeLongTypeConverter
 
LongLongAccessTypeLongTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
LongNtree - Class in net.imglib2.img.sparse
LongAccess based on a Ntree.
LongNtree(long[], long[], long) - Constructor for class net.imglib2.img.sparse.LongNtree
Standard constructor called by factory
LongNtree(Ntree<Long>, long[]) - Constructor for class net.imglib2.img.sparse.LongNtree
 
longs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
longs(long[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<LongType, LongArray> reusing a passed long[] array.
longs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<LongType, LongAccess> using a LongAccess passed as argument.
longs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
longs(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
longs(LongLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<LongType, LongArray> reusing a passed long[] array.
LongType - Class in net.imglib2.type.numeric.integer
TODO
LongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.LongType
 
LongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.LongType
 
LongType(long) - Constructor for class net.imglib2.type.numeric.integer.LongType
 
LongType() - Constructor for class net.imglib2.type.numeric.integer.LongType
 
LongUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
LongUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
LongUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
LongUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
LongUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
lookupARGB(double, double, double) - Method in class net.imglib2.display.AbstractArrayColorTable
 
lookupARGB(double, double, double) - Method in interface net.imglib2.display.ColorTable
 
LoopBuilder<T> - Class in net.imglib2.loops
LoopBuilder provides an easy way to write fast loops on RandomAccessibleIntervals.
LoopBuilder.Chunk<T> - Interface in net.imglib2.loops
 
LoopBuilder.FiveConsumer<A,B,C,D,E> - Interface in net.imglib2.loops
 
LoopBuilder.FourConsumer<A,B,C,D> - Interface in net.imglib2.loops
 
LoopBuilder.SixConsumer<A,B,C,D,E,F> - Interface in net.imglib2.loops
 
LoopBuilder.TriConsumer<A,B,C> - Interface in net.imglib2.loops
 
loopSize - Variable in class net.imglib2.multithreading.Chunk
Deprecated.
 
LoopUtils - Class in net.imglib2.loops
LoopUtils contains methods to simplify writing a loop over an image line or image interval.
LoopUtils.LineProcessor - Class in net.imglib2.loops
 
lowerTailCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of values in the lower tail bin (if any).
lowerTailCount(int) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values in the lower tail bin (if any) for the given dimension.
lowerTailCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values in all lower tail bins (if any).
LT(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
lut - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
lut - Variable in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
lutScale - Static variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 

M

m00 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
m00 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m00 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m01 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
m01 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m01 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m02 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
m02 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m02 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m03 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m10 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
m10 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m10 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m11 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
m11 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m11 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m12 - Variable in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
m12 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m12 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m13 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m20 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m20 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m21 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m21 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m22 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m22 - Variable in class net.imglib2.realtransform.HomographyTransform2D
 
m23 - Variable in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
m_strategy - Variable in class net.imglib2.labeling.LabelingView
Deprecated.
 
main(String[]) - Static method in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil
 
Majority - Class in net.imglib2.algorithm.morphology.table2d
Each pixel takes on the value of the majority that surround it (keep pixel value to break ties).
Majority() - Constructor for class net.imglib2.algorithm.morphology.table2d.Majority
 
majority(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Majority
 
majority(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Majority
 
makeKernel(int) - Static method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction
 
makeNode(List<L>, int, int, int, List<T>, int[]) - Method in class net.imglib2.KDTree
Construct the tree by recursively adding nodes.
makeNode(ListIterator<L>, ListIterator<L>, int, List<T>, int[]) - Method in class net.imglib2.KDTree
Construct the tree by recursively adding nodes.
makeNode(List<L>, int, int, int) - Method in class net.imglib2.KDTree
makeNode(ListIterator<L>, ListIterator<L>, int) - Method in class net.imglib2.KDTree
makeRoom(int, int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D.VertexList
 
makeSamplerNode(List<RealCursor<T>>, int, int, int) - Method in class net.imglib2.KDTree
Construct the tree by recursively adding nodes.
map(T) - Method in interface net.imglib2.algorithm.stats.HistogramBinMapper
Maps a given Type to its histogram bin.
map(T) - Method in class net.imglib2.algorithm.stats.IntBinMapper
 
map(T) - Method in class net.imglib2.algorithm.stats.RealBinMapper
 
map() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
 
map() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
map() - Method in class net.imglib2.display.projector.IterableIntervalProjector2D
projects data from the source to the target and applies the former specified Converter e.g.
map() - Method in class net.imglib2.display.projector.MultithreadedIterableIntervalProjector2D
 
map() - Method in interface net.imglib2.display.projector.Projector
 
map() - Method in class net.imglib2.display.projector.RandomAccessibleProjector2D
projects data from the source to the target and applies the former specified Converter e.g.
map() - Method in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
map() - Method in class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector
 
map() - Method in class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector
 
map() - Method in class net.imglib2.display.projector.specialized.PlanarImgXYByteProjector
 
map() - Method in class net.imglib2.display.projector.specialized.PlanarImgXYShortProjector
 
map() - Method in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
projects data from the source to the target and applies the former specified Converter e.g.
map(T) - Method in interface net.imglib2.histogram.BinMapper1d
Converts a data value to a long index within the bin distribution.
map(T) - Method in class net.imglib2.histogram.Histogram1d
Returns a bin position by mapping from a representative value.
map(List<T>, long[]) - Method in class net.imglib2.histogram.HistogramNd
Fills a bin position by mapping from a set of representative values.
map(T) - Method in class net.imglib2.histogram.Integer1dBinMapper
 
map(T) - Method in class net.imglib2.histogram.Real1dBinMapper
 
map(Function<T, R>, List<T>) - Static method in class net.imglib2.loops.ListUtils
 
map(Function<T, R>, T[]) - Static method in class net.imglib2.loops.ListUtils
 
mapKeys(KeyBimap<T, K>) - Method in interface net.imglib2.cache.Cache
 
mapKeys(KeyBimap<T, K>) - Method in interface net.imglib2.cache.LoaderCache
 
mapKeys(KeyBimap<T, K>) - Method in interface net.imglib2.cache.LoaderRemoverCache
 
mapKeys(KeyBimap<T, K>) - Method in interface net.imglib2.cache.RemoverCache
 
mapKeys(LoaderCache<L, V>, KeyBimap<K, L>) - Static method in class net.imglib2.cache.util.Caches
 
mapKeys(LoaderRemoverCache<L, V, D>, KeyBimap<K, L>) - Static method in class net.imglib2.cache.util.Caches
 
mapKeys(Cache<L, V>, KeyBimap<K, L>) - Static method in class net.imglib2.cache.util.Caches
 
mapKeys(RemoverCache<L, V, D>, KeyBimap<K, L>) - Static method in class net.imglib2.cache.util.Caches
 
mapping - Variable in class net.imglib2.labeling.AbstractNativeLabeling
Deprecated.
Mapping from Label
mapping - Variable in class net.imglib2.labeling.LabelingType
Deprecated.
 
mapping - Variable in class net.imglib2.roi.labeling.LabelingType
 
mapSingle(RandomAccess<A>, Converter<A, ARGBType>) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
 
mapSingle(RandomAccess<A>, Converter<A, ARGBType>) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
Mask - Interface in net.imglib2.roi
A MaskPredicate for integral Localizable.
MaskAsRandomAccessible<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.integer
This class takes a Mask of Localizable and wraps it as a RandomAccessible.
MaskAsRandomAccessible(Mask, B) - Constructor for class net.imglib2.roi.mask.integer.MaskAsRandomAccessible
Wraps a Mask as a RandomAccessible.
MaskInterval - Interface in net.imglib2.roi
A bounded Mask, that is, the mask predicate evaluates to false outside the bounds interval.
MaskIntervalAsRandomAccessibleInterval<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.integer
This class takes a MaskInterval and wraps it as a RandomAccessibleInterval.
MaskIntervalAsRandomAccessibleInterval(MaskInterval, B) - Constructor for class net.imglib2.roi.mask.integer.MaskIntervalAsRandomAccessibleInterval
MaskPredicate<T> - Interface in net.imglib2.roi
Base interface for all things that divide an N-space into two parts.
MaskPredicateRandomAccess<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.integer
RandomAccess based on Mask with Localizables.
MaskPredicateRandomAccess(Mask, B) - Constructor for class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
 
MaskPredicateRandomAccess(MaskPredicateRandomAccess<B>) - Constructor for class net.imglib2.roi.mask.integer.MaskPredicateRandomAccess
 
MaskPredicateRealRandomAccess<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.real
MaskPredicateRealRandomAccess(MaskPredicate<? super RealLocalizable>, B) - Constructor for class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
 
MaskPredicateRealRandomAccess(MaskPredicateRealRandomAccess<B>) - Constructor for class net.imglib2.roi.mask.real.MaskPredicateRealRandomAccess
 
Masks - Class in net.imglib2.roi
Utility class for working with Masks and RealMasks.
Masks() - Constructor for class net.imglib2.roi.Masks
 
maskType() - Method in interface net.imglib2.roi.composite.CompositeMaskPredicate
 
maskType() - Method in interface net.imglib2.roi.geom.real.Box
 
maskType() - Method in interface net.imglib2.roi.geom.real.Line
 
maskType() - Method in interface net.imglib2.roi.geom.real.PointMask
 
maskType() - Method in interface net.imglib2.roi.geom.real.Polygon2D
 
maskType() - Method in interface net.imglib2.roi.geom.real.Polyline
 
maskType() - Method in interface net.imglib2.roi.geom.real.RealPointCollection
 
maskType() - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid
 
maskType() - Method in interface net.imglib2.roi.MaskPredicate
Returns the type of the mask.
matches(Object...) - Method in class net.imglib2.loops.ClassCopyProvider
Returns true if the given list of objects, matches the constructor signature provided to ClassCopyProvider(Class, Class, Class[]).
matrixTranspose(AffineTransform) - Static method in class net.imglib2.realtransform.inverse.AbstractDifferentiableRealTransform
 
max - Variable in class net.imglib2.AbstractInterval
 
max(int) - Method in class net.imglib2.AbstractInterval
 
max(long[]) - Method in class net.imglib2.AbstractInterval
 
max(Positionable) - Method in class net.imglib2.AbstractInterval
 
max - Variable in class net.imglib2.AbstractRealInterval
 
max(int) - Method in class net.imglib2.AbstractWrappedInterval
 
max(long[]) - Method in class net.imglib2.AbstractWrappedInterval
 
max(Positionable) - Method in class net.imglib2.AbstractWrappedInterval
 
max() - Method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
 
max(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
max(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Max - Class in net.imglib2.algorithm.math
 
Max(Object, Object) - Constructor for class net.imglib2.algorithm.math.Max
 
Max(Object...) - Constructor for class net.imglib2.algorithm.math.Max
 
max(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
max(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
max(Positionable) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
max(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
max(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
max(Positionable) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
max(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
max(long[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
max(Positionable) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
max(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
max(long[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
max(Positionable) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
max(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
max(long[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
max(Positionable) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
max(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
max(long[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
max(Positionable) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
max(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
max(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
max(Positionable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
max(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
max(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
max(Positionable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
max(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
max(long[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
max(Positionable) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
max(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
max(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
max(Positionable) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
max(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
max(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
max(Positionable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
max(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
max(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
max(Positionable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
Max - Class in net.imglib2.algorithm.stats
Find the maximum value and its position in an IterableInterval.
Max() - Constructor for class net.imglib2.algorithm.stats.Max
 
max - Variable in class net.imglib2.display.AbstractLinearRange
 
max - Variable in class net.imglib2.display.projector.AbstractProjector2D
 
max(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
max(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
max(Positionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
max() - Method in class net.imglib2.histogram.Histogram1d
 
max(int) - Method in class net.imglib2.histogram.Histogram1d
 
max(long[]) - Method in class net.imglib2.histogram.Histogram1d
 
max(Positionable) - Method in class net.imglib2.histogram.Histogram1d
 
max(int) - Method in class net.imglib2.histogram.HistogramNd
 
max(long[]) - Method in class net.imglib2.histogram.HistogramNd
 
max(Positionable) - Method in class net.imglib2.histogram.HistogramNd
 
max - Variable in class net.imglib2.img.AbstractImg
 
max(int) - Method in class net.imglib2.img.AbstractImg
 
max(long[]) - Method in class net.imglib2.img.AbstractImg
 
max(Positionable) - Method in class net.imglib2.img.AbstractImg
 
max - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Maximum of the ArrayImg in every dimension.
max - Variable in class net.imglib2.img.cell.Cell
 
max(int) - Method in class net.imglib2.img.cell.Cell
Get the maximum in dimension d.
max - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
Maximum of the PlanarImg in every dimension.
max - Variable in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
Maximum of the UnsafeImg in every dimension.
max - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
max(int) - Method in interface net.imglib2.Interval
Get the maximum in dimension d.
max(long[]) - Method in interface net.imglib2.Interval
Write the maximum of each dimension into long[].
max(Positionable) - Method in interface net.imglib2.Interval
Sets a Positionable to the maximum of this Interval
max - Variable in class net.imglib2.KDTree
maximum of each dimension.
max - Variable in class net.imglib2.labeling.BoundingBox
Deprecated.
 
max - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
max - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
Maximum of the wrapped RandomAccessible.
max - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
max - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
Maximum of the wrapped RandomAccessible.
max - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
max - Variable in class net.imglib2.RealPointSampleList
 
max(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
max(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
max(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
max(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
max(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
max(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
max(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
max(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
max(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
max(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
max(long[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
max(Positionable) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
max(long[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
max(Positionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
max(int) - Method in class net.imglib2.roi.Bounds.IntersectionInterval
 
max(int) - Method in class net.imglib2.roi.Bounds.SmallestContainingInterval
 
max(int) - Method in class net.imglib2.roi.Bounds.UnionInterval
 
max(int) - Method in class net.imglib2.roi.labeling.LabelRegion
 
max(long[]) - Method in class net.imglib2.roi.labeling.LabelRegion
 
max(Positionable) - Method in class net.imglib2.roi.labeling.LabelRegion
 
max(int) - Method in class net.imglib2.roi.util.PositionableInterval
 
max(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
max(Positionable) - Method in class net.imglib2.roi.util.PositionableInterval
 
max(List<Float>) - Static method in class net.imglib2.util.Util
 
max(double[]) - Static method in class net.imglib2.util.Util
 
max(T, T) - Static method in class net.imglib2.util.Util
 
max(double[], double[]) - Static method in class net.imglib2.util.Util
Writes max(a,b) into a
max(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
max(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
max(Positionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
max - Variable in class net.imglib2.view.SubsampleIntervalView
 
max(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
max(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
max(Positionable) - Method in class net.imglib2.view.SubsampleIntervalView
 
maxAsDoubleArray() - Method in interface net.imglib2.RealInterval
Allocates a new double array with the maximum of this RealInterval.
maxAsDoubleArray(RealInterval) - Static method in class net.imglib2.util.Intervals
Create a double[] with the maximum of a RealInterval .
maxAsIntArray(Interval) - Static method in class net.imglib2.util.Intervals
Create a int[] with the maximum of an Interval.
maxAsLongArray() - Method in interface net.imglib2.Interval
Allocates a new long array with the maximum of this Interval.
maxAsLongArray(Interval) - Static method in class net.imglib2.util.Intervals
Create a long[] with the maximum of an Interval.
maxAsPoint() - Method in interface net.imglib2.Interval
Allocates a new Point with the maximum of this Interval.
maxAsRealPoint() - Method in interface net.imglib2.RealInterval
Allocates a new RealPoint with the maximum of this RealInterval.
maxCacheSize(long) - Method in interface net.imglib2.cache.img.optional.CacheOptions
Set the maximum number of values (cells) to keep in the cache.
maxCacheSize() - Method in interface net.imglib2.cache.img.optional.CacheOptions.Val
 
maximaTolerance - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
Maximum<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Maximum(OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Maximum
 
maximum(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
maximum(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
MaximumCheck(T) - Constructor for class net.imglib2.algorithm.localextrema.LocalExtrema.MaximumCheck
 
maxIoQueueSize(int) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions
Set the maximum size of the disk write queue.
maxIoQueueSize() - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
maxNumMoves - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
maxSourceDimension - Variable in class net.imglib2.transform.integer.SequentializeTransform
 
maxTargetDimension - Variable in class net.imglib2.transform.integer.SequentializeTransform
 
maxValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
maxValue - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
mean() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
Mean of the pixel positions in the region.
median(long[]) - Static method in class net.imglib2.util.Util
 
median(double[]) - Static method in class net.imglib2.util.Util
 
median(float[]) - Static method in class net.imglib2.util.Util
 
merge(C) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent
Merge other component (of the same concrete type) into this component.
merge(PixelList) - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
Append another PixelList to this one.
mergeARGB(RandomAccessible<UnsignedByteType>, ColorChannelOrder) - Static method in class net.imglib2.converter.Converters
Create an n-dimensional color image from an (n+1)-dimensional image of UnsignedByteType.
mergeARGB(RandomAccessibleInterval<UnsignedByteType>, ColorChannelOrder) - Static method in class net.imglib2.converter.Converters
Create an n-dimensional color image from an (n+1)-dimensional image of UnsignedByteType.
min - Variable in class net.imglib2.AbstractInterval
 
min(int) - Method in class net.imglib2.AbstractInterval
 
min(long[]) - Method in class net.imglib2.AbstractInterval
 
min(Positionable) - Method in class net.imglib2.AbstractInterval
 
min - Variable in class net.imglib2.AbstractRealInterval
 
min(int) - Method in class net.imglib2.AbstractWrappedInterval
 
min(long[]) - Method in class net.imglib2.AbstractWrappedInterval
 
min(Positionable) - Method in class net.imglib2.AbstractWrappedInterval
 
min() - Method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
 
min(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
min(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Min - Class in net.imglib2.algorithm.math
 
Min(Object, Object) - Constructor for class net.imglib2.algorithm.math.Min
 
Min(Object...) - Constructor for class net.imglib2.algorithm.math.Min
 
min(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
min(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
min(Positionable) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
min(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
min(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
min(Positionable) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
min(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
min(long[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
min(Positionable) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
min(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
min(long[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
min(Positionable) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
min(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
min(long[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
min(Positionable) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
min(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
min(long[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
min(Positionable) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
min(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
min(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
min(Positionable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
min(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
min(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
min(Positionable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
min(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
min(long[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
min(Positionable) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
min(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
min(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
min(Positionable) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
min(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
min(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
min(Positionable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
min(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
min(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
min(Positionable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
Min - Class in net.imglib2.algorithm.stats
Find the minimum value and its position in an IterableInterval.
Min() - Constructor for class net.imglib2.algorithm.stats.Min
 
min - Variable in class net.imglib2.display.AbstractLinearRange
 
min - Variable in class net.imglib2.display.projector.AbstractProjector2D
 
min(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
min(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
min(Positionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
min() - Method in class net.imglib2.histogram.Histogram1d
 
min(int) - Method in class net.imglib2.histogram.Histogram1d
 
min(long[]) - Method in class net.imglib2.histogram.Histogram1d
 
min(Positionable) - Method in class net.imglib2.histogram.Histogram1d
 
min(int) - Method in class net.imglib2.histogram.HistogramNd
 
min(long[]) - Method in class net.imglib2.histogram.HistogramNd
 
min(Positionable) - Method in class net.imglib2.histogram.HistogramNd
 
min(long[]) - Method in class net.imglib2.img.AbstractImg
 
min(int) - Method in class net.imglib2.img.AbstractImg
 
min(Positionable) - Method in class net.imglib2.img.AbstractImg
 
min - Variable in class net.imglib2.img.cell.Cell
 
min(int) - Method in class net.imglib2.img.cell.Cell
Get the minimum in dimension d.
min(int) - Method in interface net.imglib2.Interval
Get the minimum in dimension d.
min(long[]) - Method in interface net.imglib2.Interval
Write the minimum of each dimension into long[].
min(Positionable) - Method in interface net.imglib2.Interval
Sets a Positionable to the minimum of this Interval
min - Variable in class net.imglib2.KDTree
minimum of each dimension.
min - Variable in class net.imglib2.labeling.BoundingBox
Deprecated.
 
min - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Minimum of the wrapped RandomAccessible.
min - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
min - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
Minimum of the wrapped RandomAccessible.
min - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
Minimum of the wrapped RandomAccessible.
min - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
min - Variable in class net.imglib2.RealPointSampleList
 
min(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
min(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
min(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
min(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
min(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
min(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
min(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
min(Positionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
min(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
min(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
min(long[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
min(Positionable) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
min(long[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
min(Positionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
min(int) - Method in class net.imglib2.roi.Bounds.IntersectionInterval
 
min(int) - Method in class net.imglib2.roi.Bounds.SmallestContainingInterval
 
min(int) - Method in class net.imglib2.roi.Bounds.UnionInterval
 
min(int) - Method in class net.imglib2.roi.labeling.LabelRegion
 
min(long[]) - Method in class net.imglib2.roi.labeling.LabelRegion
 
min(Positionable) - Method in class net.imglib2.roi.labeling.LabelRegion
 
min(int) - Method in class net.imglib2.roi.util.PositionableInterval
 
min(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
min(Positionable) - Method in class net.imglib2.roi.util.PositionableInterval
 
min(List<Float>) - Static method in class net.imglib2.util.Util
 
min(double[]) - Static method in class net.imglib2.util.Util
 
min(T, T) - Static method in class net.imglib2.util.Util
 
min(double[], double[]) - Static method in class net.imglib2.util.Util
Writes min(a,b) into a
min(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
min(long[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
min(Positionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
min(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
min(long[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
min(Positionable) - Method in class net.imglib2.view.SubsampleIntervalView
 
minAsDoubleArray() - Method in interface net.imglib2.RealInterval
Allocates a new double array with the minimum of this RealInterval.
minAsDoubleArray(RealInterval) - Static method in class net.imglib2.util.Intervals
Create a double[] with the minimum of a RealInterval .
minAsIntArray(Interval) - Static method in class net.imglib2.util.Intervals
Create a int[] with the minimum of an Interval.
minAsLongArray() - Method in interface net.imglib2.Interval
Allocates a new long array with the minimum of this Interval.
minAsLongArray(Interval) - Static method in class net.imglib2.util.Intervals
Create a long[] with the minimum of an Interval.
minAsPoint() - Method in interface net.imglib2.Interval
Allocates a new Point with the maximum of this Interval.
minAsRealPoint() - Method in interface net.imglib2.RealInterval
Allocates a new RealPoint with the minimum of this RealInterval.
minf - Variable in class net.imglib2.algorithm.dog.DogDetection
 
Minimum<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Minimum(OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Minimum
 
minimum(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
minimum(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
MinimumCheck(T) - Constructor for class net.imglib2.algorithm.localextrema.LocalExtrema.MinimumCheck
 
minPeakValue - Variable in class net.imglib2.algorithm.dog.DogDetection
 
minThreshold - Static variable in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
minus(Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Minus - Class in net.imglib2.algorithm.math
 
Minus(Object) - Constructor for class net.imglib2.algorithm.math.Minus
 
minus(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
 
MINUS - Static variable in class net.imglib2.roi.Bounds
 
minus(B) - Method in class net.imglib2.roi.Bounds
 
minus(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
 
minus(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.MaskInterval
 
minus(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
 
minus(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
 
minus(MaskInterval, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
 
minus(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
 
minus(RealMaskRealInterval, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
 
MINUS - Static variable in class net.imglib2.roi.Operators
 
minus(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
 
minus(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
minValue - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
minValue - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
mirror - Variable in class net.imglib2.img.planar.PlanarImg
 
Mixed - Interface in net.imglib2.transform.integer
Mixed transform allows to express common integer view transformations such as translation, rotation, rotoinversion, and projection.
MixedRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a Mixed transformToSource.
MixedRandomAccess(MixedRandomAccess<T>) - Constructor for class net.imglib2.view.MixedRandomAccess
 
MixedTransform - Class in net.imglib2.transform.integer
Mixed transform allows to express common integer view transformations such as translation, rotation, rotoinversion, and projection.
MixedTransform(int, int) - Constructor for class net.imglib2.transform.integer.MixedTransform
 
MixedTransformView<T> - Class in net.imglib2.view
TODO
MixedTransformView(RandomAccessible<T>, Mixed) - Constructor for class net.imglib2.view.MixedTransformView
 
MLEllipticGaussianEstimator - Class in net.imglib2.algorithm.localization
An fit initializer suitable for the fitting of elliptic orthogonal gaussians (EllipticGaussianOrtho, ellipse axes must be parallel to image axes) functions on n-dimensional image data.
MLEllipticGaussianEstimator(double[]) - Constructor for class net.imglib2.algorithm.localization.MLEllipticGaussianEstimator
Instantiates a new elliptic gaussian estimator.
MLGaussianEstimator - Class in net.imglib2.algorithm.localization
An fit initializer suitable for the fitting of gaussian peaks ( Gaussian, on n-dimensional image data.
MLGaussianEstimator(double, int) - Constructor for class net.imglib2.algorithm.localization.MLGaussianEstimator
Instantiates a new elliptic gaussian estimator.
ModCount() - Constructor for class net.imglib2.roi.labeling.LabelingType.ModCount
 
modeCount() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns the highest frequency count found within the bins.
modePositions() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns a list of bin positions of the highest frequency bins.
MomentOfInertiaTensor2D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
A class to compute a diffusion tensor for anisotropic diffusion, based on moment of inertia.
MomentOfInertiaTensor2D(Img<T>, int, double, double) - Constructor for class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
Deprecated.
MomentOfInertiaTensor2D(Img<T>, int) - Constructor for class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
Deprecated.
Use MomentOfInertiaTensor2D(RandomAccessibleInterval, ImgFactory, int) and specify the ImgFactory<Float> for the output.
MomentOfInertiaTensor2D(RandomAccessibleInterval<T>, ImgFactory<FloatType>, int) - Constructor for class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
 
MomentOfInertiaTensor2D(RandomAccessibleInterval<T>, ImgFactory<FloatType>, int, double, double) - Constructor for class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
 
MomentOfInertiaTensor3D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
A class to compute a diffusion tensor for anisotropic diffusion, based on moment of inertia.
MomentOfInertiaTensor3D(Img<T>, int, double, double) - Constructor for class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
Deprecated.
Use MomentOfInertiaTensor3D(RandomAccessibleInterval, ImgFactory, int, double, double) instead and define the ArrayImg<FloatType> for the output.
MomentOfInertiaTensor3D(Img<T>, int) - Constructor for class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
Deprecated.
Use MomentOfInertiaTensor3D(RandomAccessibleInterval, ImgFactory, int, double, double) instead and define the ArrayImg<FloatType> for the output.
MomentOfInertiaTensor3D(RandomAccessibleInterval<T>, ImgFactory<FloatType>, int, double, double) - Constructor for class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
 
MomentOfInertiaTensor3D(RandomAccessibleInterval<T>, ImgFactory<FloatType>, int) - Constructor for class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
 
MorphologyUtils - Class in net.imglib2.algorithm.morphology
 
MorphologyUtils() - Constructor for class net.imglib2.algorithm.morphology.MorphologyUtils
 
move(int, int) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
move(long, int) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
move(Localizable) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
move(int[]) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
move(long[]) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
move(int, int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
move(long, int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
move(Localizable) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
move(int[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
move(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
move(int, int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
move(long, int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
move(Localizable) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
move(int[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
move(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
move(int, int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
move(long, int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
move(Localizable) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
move(int[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
move(long[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
move(int, int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
move(long, int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
move(Localizable) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
move(int[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
move(long[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
move(int, int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
move(long, int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
move(Localizable) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
move(int[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
move(long[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
move(int, int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
move(long, int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
move(Localizable) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
move(int[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
move(long[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
move(int, int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
move(long, int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
move(Localizable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
move(int[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
move(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
move(int, int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
move(long, int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
move(Localizable) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
move(int[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
move(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
move(long, int) - Method in interface net.imglib2.algorithm.util.Grids.MoveForDimension
 
move(int, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(long, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
move(int, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(long, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(int[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(long[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(float, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(double, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(RealLocalizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
move(int, int) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
move(long, int) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
move(Localizable) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
move(int[]) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
move(long[]) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
move(int, int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(long, int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(Localizable) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(int[]) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(long[]) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(float, int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(double, int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(RealLocalizable) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(float[]) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(double[]) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
move(int, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(long, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(int[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(long[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
move(long) - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves n steps in dimension 0
move(int, int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(long, int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(int[]) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(long[]) - Method in class net.imglib2.img.cell.CellRandomAccess
 
move(int, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(long, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(int[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
move(int, int) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(long, int) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(int[]) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(long[]) - Method in class net.imglib2.img.list.ListRandomAccess
 
move(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(long, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
move(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
move(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
move(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
move(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
move(long, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(int, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
move(int, int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
move(long, int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
move(Localizable) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
move(int[]) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
move(long[]) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
move(long) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
Moves n steps in dimension 0
move(double, int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
move(RealLocalizable) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
move(Localizable) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
move(int[]) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
move(long[]) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
move(double[]) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
move(float[]) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
move(int, int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(long, int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(float, int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(double, int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(RealLocalizable) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(Localizable) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(int[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(long[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(double[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(float[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
move(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Override with a more efficient version.
move(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
move(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
move(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
move(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
move(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
move(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
move(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
move(float, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(double, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(RealLocalizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(int, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(long, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(Localizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(int[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(long[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
move(int, int) - Method in class net.imglib2.Point
 
move(long, int) - Method in class net.imglib2.Point
 
move(Localizable) - Method in class net.imglib2.Point
 
move(int[]) - Method in class net.imglib2.Point
 
move(long[]) - Method in class net.imglib2.Point
 
move(int, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(long, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(Localizable) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(int[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(long[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
move(float, int) - Method in class net.imglib2.position.transform.Floor
 
move(double, int) - Method in class net.imglib2.position.transform.Floor
 
move(RealLocalizable) - Method in class net.imglib2.position.transform.Floor
 
move(float[]) - Method in class net.imglib2.position.transform.Floor
 
move(double[]) - Method in class net.imglib2.position.transform.Floor
 
move(float, int) - Method in class net.imglib2.position.transform.FloorOffset
 
move(double, int) - Method in class net.imglib2.position.transform.FloorOffset
 
move(RealLocalizable) - Method in class net.imglib2.position.transform.FloorOffset
 
move(float[]) - Method in class net.imglib2.position.transform.FloorOffset
 
move(double[]) - Method in class net.imglib2.position.transform.FloorOffset
 
move(float, int) - Method in class net.imglib2.position.transform.Round
 
move(double, int) - Method in class net.imglib2.position.transform.Round
 
move(RealLocalizable) - Method in class net.imglib2.position.transform.Round
 
move(float[]) - Method in class net.imglib2.position.transform.Round
 
move(double[]) - Method in class net.imglib2.position.transform.Round
 
move(int, int) - Method in interface net.imglib2.Positionable
Move the element in one dimension for some distance.
move(long, int) - Method in interface net.imglib2.Positionable
Move the element in one dimension for some distance.
move(Localizable) - Method in interface net.imglib2.Positionable
Move the element relative to its current location using an Localizable as distance vector.
move(int[]) - Method in interface net.imglib2.Positionable
Move the element relative to its current location using an int[] as distance vector.
move(long[]) - Method in interface net.imglib2.Positionable
Move the element relative to its current location using a long[] as distance vector.
move(int, int) - Method in class net.imglib2.RealPoint
 
move(long, int) - Method in class net.imglib2.RealPoint
 
move(Localizable) - Method in class net.imglib2.RealPoint
 
move(int[]) - Method in class net.imglib2.RealPoint
 
move(long[]) - Method in class net.imglib2.RealPoint
 
move(float, int) - Method in class net.imglib2.RealPoint
 
move(double, int) - Method in class net.imglib2.RealPoint
 
move(RealLocalizable) - Method in class net.imglib2.RealPoint
 
move(float[]) - Method in class net.imglib2.RealPoint
 
move(double[]) - Method in class net.imglib2.RealPoint
 
move(float, int) - Method in interface net.imglib2.RealPositionable
Move the element in one dimension for some distance.
move(double, int) - Method in interface net.imglib2.RealPositionable
Move the element in one dimension for some distance.
move(RealLocalizable) - Method in interface net.imglib2.RealPositionable
Move the element relative to its current location using a RealLocalizable as distance vector.
move(float[]) - Method in interface net.imglib2.RealPositionable
Move the element relative to its current location using a float[] as distance vector.
move(double[]) - Method in interface net.imglib2.RealPositionable
Move the element relative to its current location using a float[] as distance vector.
move(long, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
move(int, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
move(Localizable) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
move(int[]) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
move(long[]) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
move(float, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(double, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(RealLocalizable) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(float[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(double[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(int, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(long, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(Localizable) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(int[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(long[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
move(float, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(double, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(RealLocalizable) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(float[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(double[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(int, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(long, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(Localizable) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(int[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(long[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
move(float, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(double, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(int, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(long, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(RealLocalizable) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(Localizable) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(float[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(int[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(long[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
move(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
move(double, int) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
move(double, int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
move(double, int) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
 
move(RealLocalizable) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Move the origin of the ellipse by the given displacement
move(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
move(double, int) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
move(double, int) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
move(double[]) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
move(int, int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
move(long, int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
move(Localizable) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
move(int[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
move(long[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
move(double, int) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
move(double, int) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
move(double, int) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
move(double, int) - Method in interface net.imglib2.roi.RegionOfInterest
Deprecated.
 
move(double[]) - Method in interface net.imglib2.roi.RegionOfInterest
Deprecated.
 
move(float, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(double, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(RealLocalizable) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(float[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(double[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(int, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(long, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(Localizable) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(int[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(long[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
move(int, int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
move(long, int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
move(Localizable) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
move(int[]) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
move(long[]) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
move(int, int) - Method in class net.imglib2.roi.util.PositionableInterval
 
move(long, int) - Method in class net.imglib2.roi.util.PositionableInterval
 
move(Localizable) - Method in class net.imglib2.roi.util.PositionableInterval
 
move(int[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
move(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
move(float, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(double, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(RealLocalizable) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(float[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(double[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(int, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(long, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(Localizable) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(int[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(long[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
move(int, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(long, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
move(int, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(long, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
move(int, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(long, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
move(int, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(long, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
move(int, int) - Method in class net.imglib2.view.MixedRandomAccess
 
move(long, int) - Method in class net.imglib2.view.MixedRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.MixedRandomAccess
 
move(int[]) - Method in class net.imglib2.view.MixedRandomAccess
 
move(long[]) - Method in class net.imglib2.view.MixedRandomAccess
 
move(int, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(long, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(Localizable) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
move(int, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(long, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(Localizable) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
move(int, int) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(long, int) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(int[]) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(long[]) - Method in class net.imglib2.view.SlicingRandomAccess
 
move(int, int) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(long, int) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(Localizable) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
move(int, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(long, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(Localizable) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
move(int, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(long, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
move(int, int) - Method in class net.imglib2.view.TransformRandomAccess
 
move(long, int) - Method in class net.imglib2.view.TransformRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.TransformRandomAccess
 
move(int[]) - Method in class net.imglib2.view.TransformRandomAccess
 
move(long[]) - Method in class net.imglib2.view.TransformRandomAccess
 
move(int, int) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(long, int) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(Localizable) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
move(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
MoveAllSlicesRA(RandomAccessibleInterval<T>[]) - Constructor for class net.imglib2.view.StackView.MoveAllSlicesRA
 
MoveAllSlicesRA(RandomAccessibleInterval<T>[], Interval) - Constructor for class net.imglib2.view.StackView.MoveAllSlicesRA
 
moveAxis(ImgPlus<T>, int, int) - Static method in class net.imglib2.img.display.imagej.ImgPlusViews
Permutes the axes of the image.
moveAxis(Interval, int, int) - Static method in class net.imglib2.util.Intervals
Create an interval with permuted axes.
moveAxis(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Create view with permuted axes.
moveAxis(RandomAccessibleInterval<T>, int, int) - Static method in class net.imglib2.view.Views
Create view with permuted axes.
moveAxis(int, int, int) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.moveAxis(RandomAccessible, int, int).
moveDim0(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves n steps in dimension 0
moveDim0(int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
Moves n steps in dimension 0
moves - Variable in class net.imglib2.algorithm.math.execution.BlockReadingSource
First move is relative to the location, rest of moves are relative to prior move.
moveTo(double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
moveTo(double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler
Deprecated.
 
Mser<T extends Type<T>> - Class in net.imglib2.algorithm.componenttree.mser
A maximally stable extremal region (MSER) of the image thresholded at Mser.value().
MserTree<T extends Type<T>> - Class in net.imglib2.algorithm.componenttree.mser
MSER tree of an image stored as a tree of PixelListComponents.
mul(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
mul(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Mul - Class in net.imglib2.algorithm.math
 
Mul(Object, Object) - Constructor for class net.imglib2.algorithm.math.Mul
 
Mul(Object...) - Constructor for class net.imglib2.algorithm.math.Mul
 
mul(BitType) - Method in class net.imglib2.type.logic.BitType
 
mul(float) - Method in class net.imglib2.type.logic.BitType
 
mul(double) - Method in class net.imglib2.type.logic.BitType
 
mul(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
mul(float) - Method in class net.imglib2.type.logic.NativeBoolType
 
mul(double) - Method in class net.imglib2.type.logic.NativeBoolType
 
mul(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
mul(float) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
mul(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
mul(float) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
mul(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.ARGBType
 
mul(double) - Method in class net.imglib2.type.numeric.ARGBType
 
mul(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
mul(float) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
mul(double) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
mul(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
mul(ComplexFloatLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
mul(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
mul(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
mul(double) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
mul(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
mul(UnsignedByteLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
mul(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
mul(UnsignedIntLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
mul(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
mul(UnsignedLongLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
mul(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
mul(UnsignedShortLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
mul(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
mul(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
mul(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
mul(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
mul(float) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
mul(double) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
mul(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
mul(float) - Method in class net.imglib2.type.numeric.real.FloatType
 
mul(double) - Method in class net.imglib2.type.numeric.real.FloatType
 
mul(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
Mul<T> - Interface in net.imglib2.type.operators
 
mul(T) - Method in interface net.imglib2.type.operators.Mul
 
mul(float) - Method in interface net.imglib2.type.operators.MulFloatingPoint
 
mul(double) - Method in interface net.imglib2.type.operators.MulFloatingPoint
 
mul(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
mul(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
mul(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
mul(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
mul(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
mul(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
mul(Fraction) - Method in class net.imglib2.util.Fraction
 
mul(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
mul(float) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
mul(double) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
mulCeil(long) - Method in class net.imglib2.util.Fraction
Multiply the value with this fraction.
MulFloatingPoint - Interface in net.imglib2.type.operators
 
mult(double[][], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = A * b.
mult(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A * B.
multABT(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A * B^T.
multATB(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A^T * B.
MultiDimensionConvolution<T> - Class in net.imglib2.algorithm.convolution
It's useful if there are multi Convolutions, each of which only works for a particular dimensionality.
MultiDimensionConvolution(IntFunction<Convolution<T>>) - Constructor for class net.imglib2.algorithm.convolution.MultiDimensionConvolution
Constructor
Multiplication<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Multiplication(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Multiplication
 
multiply(RandomAccessibleInterval<ComplexFloatType>, RandomAccessibleInterval<ComplexFloatType>) - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
Multiply in Fourier Space
multiply(RandomAccessibleInterval<ComplexFloatType>, RandomAccessibleInterval<ComplexFloatType>) - Method in class net.imglib2.algorithm.fft.InverseFourierConvolution
Deprecated.
Divide in Fourier Space
multiplyDivideComplex(Img<ComplexFloatType>, Img<ComplexFloatType>, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
MultiThreaded - Interface in net.imglib2.algorithm
TODO
multiThreaded() - Method in class net.imglib2.loops.LoopBuilder
By default LoopBuilder runs the loop without multi-threading.
multiThreaded(boolean) - Method in class net.imglib2.loops.LoopBuilder
 
multiThreaded(TaskExecutor) - Method in class net.imglib2.loops.LoopBuilder
By default LoopBuilder runs the loop without multi-threading.
multiThreaded() - Static method in class net.imglib2.parallel.TaskExecutors
TaskExecutor for multi-threaded execution.
MultiThreadedAlgorithm - Class in net.imglib2.algorithm
This is a convenience implementation of an algorithm that implements MultiThreaded and Algorithm so that less code has to be re-implemented.
MultiThreadedAlgorithm() - Constructor for class net.imglib2.algorithm.MultiThreadedAlgorithm
 
MultiThreadedBenchmarkAlgorithm - Class in net.imglib2.algorithm
This is a convenience implementation of an algorithm that implements MultiThreaded, Benchmark and Algorithm so that less code has to be re-implemented.
MultiThreadedBenchmarkAlgorithm() - Constructor for class net.imglib2.algorithm.MultiThreadedBenchmarkAlgorithm
 
MultithreadedIterableIntervalProjector2D<A,B> - Class in net.imglib2.display.projector
Multithreaded version of IterableIntervalProjector2D by
MultithreadedIterableIntervalProjector2D(int, int, RandomAccessible<A>, IterableInterval<B>, Converter<? super A, B>, ExecutorService, int) - Constructor for class net.imglib2.display.projector.MultithreadedIterableIntervalProjector2D
 
MultithreadedIterableIntervalProjector2D(int, int, RandomAccessible<A>, IterableInterval<B>, Converter<? super A, B>, ExecutorService) - Constructor for class net.imglib2.display.projector.MultithreadedIterableIntervalProjector2D
 
multT(double[][], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = A^T * b.
must_run_as_RandomAccess - Variable in class net.imglib2.algorithm.math.Compute.Parameters
 
MyConvolver(int, FastGaussCalculator.Parameters, RandomAccess<? extends RealType<?>>, RandomAccess<? extends RealType<?>>, long) - Constructor for class net.imglib2.algorithm.convolution.fast_gauss.FastGaussConvolverRealType.MyConvolver
 

N

n - Variable in class net.imglib2.AbstractEuclideanSpace
the number of dimensions.
N - Variable in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussCalculator.Parameters
the width of the filter
n - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
n - Variable in class net.imglib2.img.AbstractImg
 
n - Variable in class net.imglib2.img.cell.Cell
 
n - Variable in class net.imglib2.interpolation.Interpolant
 
n - Variable in class net.imglib2.KDTree
the number of dimensions.
n - Variable in class net.imglib2.KDTreeNode
number of dimensions of the space (that is, k).
n - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
n - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
n - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
n - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
n - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
n - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
n - Variable in class net.imglib2.position.AbstractFunctionEuclideanSpace
 
n - Variable in class net.imglib2.RealPointSampleList
 
n - Variable in class net.imglib2.realtransform.AbstractAffineTransform
 
n - Variable in class net.imglib2.transform.integer.BoundingBox
 
n - Variable in class net.imglib2.view.composite.CompositeView
 
n - Variable in class net.imglib2.view.MixedTransformView
 
n - Variable in class net.imglib2.view.TransformView
 
nanoTime() - Method in class net.imglib2.util.StopWatch
Get the total time the clock was running, in nano-seconds.
NativeARGBDoubleType - Class in net.imglib2.type.numeric
 
NativeARGBDoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
 
NativeARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
 
NativeARGBDoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
 
NativeARGBDoubleType() - Constructor for class net.imglib2.type.numeric.NativeARGBDoubleType
 
NativeBoolType - Class in net.imglib2.type.logic
NativeType backed by boolean.
NativeBoolType(NativeImg<?, ? extends BooleanAccess>) - Constructor for class net.imglib2.type.logic.NativeBoolType
 
NativeBoolType(boolean) - Constructor for class net.imglib2.type.logic.NativeBoolType
 
NativeBoolType(BooleanAccess) - Constructor for class net.imglib2.type.logic.NativeBoolType
 
NativeBoolType() - Constructor for class net.imglib2.type.logic.NativeBoolType
 
NativeImg<T extends Type<T>,A> - Interface in net.imglib2.img
TODO
NativeImgFactory<T extends NativeType<T>> - Class in net.imglib2.img
TODO: get rid of NativeImgFactory???
NativeImgFactory(T) - Constructor for class net.imglib2.img.NativeImgFactory
 
NativeImgFactory() - Constructor for class net.imglib2.img.NativeImgFactory
Deprecated.
NativeImgLabeling<T extends Comparable<T>,I extends IntegerType<I>> - Class in net.imglib2.labeling
Deprecated.
NativeImgLabeling(Img<I>) - Constructor for class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
NativeImgLabeling(LabelingROIStrategyFactory<T>, Img<I>) - Constructor for class net.imglib2.labeling.NativeImgLabeling
Deprecated.
Create a labeling backed by a native image with custom strategy and image factory
NativeLabeling<T extends Comparable<T>> - Interface in net.imglib2.labeling
Deprecated.
NativeLongAccessImg<T extends Type<T>,A> - Interface in net.imglib2.img
TODO
NativeLongAccessImgFactory<T extends NativeLongAccessType<T>> - Class in net.imglib2.img
TODO
NativeLongAccessImgFactory(T) - Constructor for class net.imglib2.img.NativeLongAccessImgFactory
 
NativeLongAccessType<T extends NativeLongAccessType<T>> - Interface in net.imglib2.type
A NativeLongAccessType is a Type that that provides access to data stored in Java primitive arrays.
NativeLongAccessTypeFactory<T extends NativeLongAccessType<T>,A> - Class in net.imglib2.type
NativeLongAccessTypeFactory is used to create a linked type T for a matching NativeLongAccessImg.
NativeType<T extends NativeType<T>> - Interface in net.imglib2.type
A NativeType is a Type that that provides access to data stored in Java primitive arrays.
NativeTypeFactory<T extends NativeType<T>,A> - Class in net.imglib2.type
NativeTypeFactory is used to create a linked type T for a matching NativeImg.
nBits - Variable in class net.imglib2.type.AbstractBitType
 
nCols - Variable in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
nDim - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
nDimensions - Variable in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
NearestNeighborInterpolator<T> - Class in net.imglib2.interpolation.randomaccess
RealRandomAccess to a RandomAccess by nearest neighbor interpolation.
NearestNeighborInterpolator(NearestNeighborInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
NearestNeighborInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
NearestNeighborInterpolatorFactory<T> - Class in net.imglib2.interpolation.randomaccess
 
NearestNeighborInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
 
NearestNeighborRealRandomAccessibleStackInterpolator<T> - Class in net.imglib2.interpolation.stack
A nearest neighbor interpolator for stacks of RealRandomAccessibles.
NearestNeighborRealRandomAccessibleStackInterpolator(RealRandomAccessible<T>[]) - Constructor for class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
NearestNeighborRealRandomAccessibleStackInterpolator(List<RealRandomAccessible<T>>) - Constructor for class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
NearestNeighborRealRandomAccessibleStackInterpolator(NearestNeighborRealRandomAccessibleStackInterpolator<T>) - Constructor for class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
NearestNeighborRealRandomAccessibleStackInterpolatorFactory<T,F extends List<RealRandomAccessible<T>>> - Class in net.imglib2.interpolation.stack
 
NearestNeighborRealRandomAccessibleStackInterpolatorFactory() - Constructor for class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolatorFactory
 
NearestNeighborSearch<T> - Interface in net.imglib2.neighborsearch
Nearest-neighbor search in an Euclidean space.
NearestNeighborSearchInterpolator<T> - Class in net.imglib2.interpolation.neighborsearch
Nearest-neighbor interpolation implemented by NearestNeighborSearch.
NearestNeighborSearchInterpolator(NearestNeighborSearch<T>) - Constructor for class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
NearestNeighborSearchInterpolatorFactory<T> - Class in net.imglib2.interpolation.neighborsearch
Factory for NearestNeighborSearchInterpolator instances that work on a NearestNeighborSearch.
NearestNeighborSearchInterpolatorFactory() - Constructor for class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
 
NearestNeighborSearchOnIterableRealInterval<T> - Class in net.imglib2.neighborsearch
k-nearest-neighbor search on IterableRealInterval implemented as linear search.
NearestNeighborSearchOnIterableRealInterval(IterableRealInterval<T>) - Constructor for class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
NearestNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
Implementation of NearestNeighborSearch search for kd-trees.
NearestNeighborSearchOnKDTree(KDTree<T>) - Constructor for class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
negate() - Method in enum net.imglib2.roi.BoundaryType
 
NEGATE - Static variable in class net.imglib2.roi.Bounds
 
negate() - Method in class net.imglib2.roi.Bounds
 
negate() - Method in interface net.imglib2.roi.Mask
 
negate() - Method in interface net.imglib2.roi.MaskPredicate
 
negate(Mask) - Static method in class net.imglib2.roi.Masks
 
negate(RealMask) - Static method in class net.imglib2.roi.Masks
 
NEGATE - Static variable in class net.imglib2.roi.Operators
 
negate() - Method in interface net.imglib2.roi.RealMask
 
Neighborhood<T> - Interface in net.imglib2.algorithm.neighborhood
 
neighborhood - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
neighborhoodFactory - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
neighborhoodFactory - Variable in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
neighborhoodFactory - Variable in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
neighborhoodFactory - Variable in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
neighborhoodFactory - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.DiamondShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.RectangleShape
 
neighborhoods(RandomAccessibleInterval<T>) - Method in interface net.imglib2.algorithm.neighborhood.Shape
Get an IterableInterval that contains all Neighborhoods of the source image.
NeighborhoodsAccessible(RandomAccessible<T>, long, DiamondNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsAccessible
 
NeighborhoodsAccessible(RandomAccessible<T>, long, DiamondTipsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsAccessible
 
NeighborhoodsAccessible(RandomAccessible<T>, long, int, boolean, HorizontalLineNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsAccessible
 
NeighborhoodsAccessible(RandomAccessible<T>, long, HyperSphereNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsAccessible
 
NeighborhoodsAccessible(RandomAccessible<T>, long[], PairOfPointsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsAccessible
 
NeighborhoodsAccessible(RandomAccessible<T>, long, int[], PeriodicLineNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsAccessible
 
NeighborhoodsAccessible(RandomAccessible<T>, Interval, RectangleNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsAccessible
 
NeighborhoodsIterableInterval(RandomAccessibleInterval<T>, long, DiamondNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsIterableInterval
 
NeighborhoodsIterableInterval(RandomAccessibleInterval<T>, long, DiamondTipsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsIterableInterval
 
NeighborhoodsIterableInterval(RandomAccessibleInterval<T>, long, int, boolean, HorizontalLineNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsIterableInterval
 
NeighborhoodsIterableInterval(RandomAccessibleInterval<T>, long, HyperSphereNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsIterableInterval
 
NeighborhoodsIterableInterval(RandomAccessibleInterval<T>, long[], PairOfPointsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsIterableInterval
 
NeighborhoodsIterableInterval(RandomAccessibleInterval<T>, long, int[], PeriodicLineNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsIterableInterval
 
NeighborhoodsIterableInterval(RandomAccessibleInterval<T>, Interval, RectangleNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsIterableInterval
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.DiamondShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.RectangleShape
 
neighborhoodsRandomAccessible(RandomAccessible<T>) - Method in interface net.imglib2.algorithm.neighborhood.Shape
Get an RandomAccessibleInterval that contains all Neighborhoods of the source image.
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.DiamondShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in class net.imglib2.algorithm.neighborhood.RectangleShape
 
neighborhoodsRandomAccessibleSafe(RandomAccessible<T>) - Method in interface net.imglib2.algorithm.neighborhood.Shape
Get an RandomAccessibleInterval that contains all Neighborhoods of the source image.
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.DiamondShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.neighborhood.RectangleShape
 
neighborhoodsSafe(RandomAccessibleInterval<T>) - Method in interface net.imglib2.algorithm.neighborhood.Shape
Get an IterableInterval that contains all Neighborhoods of the source image.
NEQ(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
nestedFixedThreadPool(int, int) - Static method in class net.imglib2.parallel.TaskExecutors
Returns a TaskExecutor that uses a fixed thread pool with the given number of threads.
net.imglib2 - package net.imglib2
 
net.imglib2.algorithm - package net.imglib2.algorithm
 
net.imglib2.algorithm.binary - package net.imglib2.algorithm.binary
 
net.imglib2.algorithm.bspline - package net.imglib2.algorithm.bspline
 
net.imglib2.algorithm.componenttree - package net.imglib2.algorithm.componenttree
 
net.imglib2.algorithm.componenttree.mser - package net.imglib2.algorithm.componenttree.mser
 
net.imglib2.algorithm.componenttree.pixellist - package net.imglib2.algorithm.componenttree.pixellist
 
net.imglib2.algorithm.convolution - package net.imglib2.algorithm.convolution
 
net.imglib2.algorithm.convolution.fast_gauss - package net.imglib2.algorithm.convolution.fast_gauss
 
net.imglib2.algorithm.convolution.kernel - package net.imglib2.algorithm.convolution.kernel
 
net.imglib2.algorithm.dog - package net.imglib2.algorithm.dog
 
net.imglib2.algorithm.edge - package net.imglib2.algorithm.edge
 
net.imglib2.algorithm.fft - package net.imglib2.algorithm.fft
 
net.imglib2.algorithm.fft2 - package net.imglib2.algorithm.fft2
 
net.imglib2.algorithm.fill - package net.imglib2.algorithm.fill
 
net.imglib2.algorithm.floydsteinberg - package net.imglib2.algorithm.floydsteinberg
 
net.imglib2.algorithm.function - package net.imglib2.algorithm.function
 
net.imglib2.algorithm.gauss - package net.imglib2.algorithm.gauss
 
net.imglib2.algorithm.gauss3 - package net.imglib2.algorithm.gauss3
 
net.imglib2.algorithm.gradient - package net.imglib2.algorithm.gradient
 
net.imglib2.algorithm.hough - package net.imglib2.algorithm.hough
 
net.imglib2.algorithm.integral - package net.imglib2.algorithm.integral
 
net.imglib2.algorithm.interpolation.randomaccess - package net.imglib2.algorithm.interpolation.randomaccess
 
net.imglib2.algorithm.kdtree - package net.imglib2.algorithm.kdtree
 
net.imglib2.algorithm.labeling - package net.imglib2.algorithm.labeling
 
net.imglib2.algorithm.lazy - package net.imglib2.algorithm.lazy
 
net.imglib2.algorithm.linalg.eigen - package net.imglib2.algorithm.linalg.eigen
 
net.imglib2.algorithm.linalg.matrix - package net.imglib2.algorithm.linalg.matrix
 
net.imglib2.algorithm.localextrema - package net.imglib2.algorithm.localextrema
 
net.imglib2.algorithm.localization - package net.imglib2.algorithm.localization
An imglib2 package dedicated to various techniques enabling the precise localization of objects in image, possible with sub-pixel accuracy.
net.imglib2.algorithm.math - package net.imglib2.algorithm.math
 
net.imglib2.algorithm.math.abstractions - package net.imglib2.algorithm.math.abstractions
 
net.imglib2.algorithm.math.execution - package net.imglib2.algorithm.math.execution
 
net.imglib2.algorithm.morphology - package net.imglib2.algorithm.morphology
 
net.imglib2.algorithm.morphology.distance - package net.imglib2.algorithm.morphology.distance
 
net.imglib2.algorithm.morphology.table2d - package net.imglib2.algorithm.morphology.table2d
 
net.imglib2.algorithm.neighborhood - package net.imglib2.algorithm.neighborhood
 
net.imglib2.algorithm.pde - package net.imglib2.algorithm.pde
 
net.imglib2.algorithm.region - package net.imglib2.algorithm.region
 
net.imglib2.algorithm.region.hypersphere - package net.imglib2.algorithm.region.hypersphere
 
net.imglib2.algorithm.region.localneighborhood - package net.imglib2.algorithm.region.localneighborhood
 
net.imglib2.algorithm.region.localneighborhood.old - package net.imglib2.algorithm.region.localneighborhood.old
 
net.imglib2.algorithm.stats - package net.imglib2.algorithm.stats
 
net.imglib2.algorithm.transformation - package net.imglib2.algorithm.transformation
 
net.imglib2.algorithm.tree - package net.imglib2.algorithm.tree
 
net.imglib2.algorithm.util - package net.imglib2.algorithm.util
 
net.imglib2.algorithm.util.unionfind - package net.imglib2.algorithm.util.unionfind
 
net.imglib2.cache - package net.imglib2.cache
 
net.imglib2.cache.img - package net.imglib2.cache.img
 
net.imglib2.cache.img.optional - package net.imglib2.cache.img.optional
 
net.imglib2.cache.iotiming - package net.imglib2.cache.iotiming
 
net.imglib2.cache.queue - package net.imglib2.cache.queue
 
net.imglib2.cache.ref - package net.imglib2.cache.ref
 
net.imglib2.cache.util - package net.imglib2.cache.util
 
net.imglib2.cache.volatiles - package net.imglib2.cache.volatiles
 
net.imglib2.concatenate - package net.imglib2.concatenate
 
net.imglib2.converter - package net.imglib2.converter
 
net.imglib2.converter.longaccess - package net.imglib2.converter.longaccess
 
net.imglib2.converter.read - package net.imglib2.converter.read
 
net.imglib2.converter.readwrite - package net.imglib2.converter.readwrite
 
net.imglib2.converter.readwrite.longaccess - package net.imglib2.converter.readwrite.longaccess
 
net.imglib2.display - package net.imglib2.display
 
net.imglib2.display.awt - package net.imglib2.display.awt
 
net.imglib2.display.projector - package net.imglib2.display.projector
 
net.imglib2.display.projector.composite - package net.imglib2.display.projector.composite
 
net.imglib2.display.projector.sampler - package net.imglib2.display.projector.sampler
 
net.imglib2.display.projector.specialized - package net.imglib2.display.projector.specialized
 
net.imglib2.display.projector.volatiles - package net.imglib2.display.projector.volatiles
 
net.imglib2.display.screenimage - package net.imglib2.display.screenimage
 
net.imglib2.display.screenimage.awt - package net.imglib2.display.screenimage.awt
 
net.imglib2.exception - package net.imglib2.exception
 
net.imglib2.histogram - package net.imglib2.histogram
 
net.imglib2.img - package net.imglib2.img
 
net.imglib2.img.array - package net.imglib2.img.array
 
net.imglib2.img.basictypeaccess - package net.imglib2.img.basictypeaccess
 
net.imglib2.img.basictypeaccess.array - package net.imglib2.img.basictypeaccess.array
 
net.imglib2.img.basictypeaccess.volatiles - package net.imglib2.img.basictypeaccess.volatiles
 
net.imglib2.img.basictypeaccess.volatiles.array - package net.imglib2.img.basictypeaccess.volatiles.array
 
net.imglib2.img.basictypelongaccess - package net.imglib2.img.basictypelongaccess
 
net.imglib2.img.basictypelongaccess.unsafe - package net.imglib2.img.basictypelongaccess.unsafe
 
net.imglib2.img.basictypelongaccess.unsafe.owning - package net.imglib2.img.basictypelongaccess.unsafe.owning
 
net.imglib2.img.basictypelongaccess.wrapped - package net.imglib2.img.basictypelongaccess.wrapped
 
net.imglib2.img.cell - package net.imglib2.img.cell
 
net.imglib2.img.display.imagej - package net.imglib2.img.display.imagej
 
net.imglib2.img.imageplus - package net.imglib2.img.imageplus
 
net.imglib2.img.io - package net.imglib2.img.io
 
net.imglib2.img.io.proxyaccess - package net.imglib2.img.io.proxyaccess
 
net.imglib2.img.list - package net.imglib2.img.list
 
net.imglib2.img.planar - package net.imglib2.img.planar
 
net.imglib2.img.sparse - package net.imglib2.img.sparse
 
net.imglib2.img.unsafe - package net.imglib2.img.unsafe
 
net.imglib2.interpolation - package net.imglib2.interpolation
 
net.imglib2.interpolation.neighborsearch - package net.imglib2.interpolation.neighborsearch
 
net.imglib2.interpolation.randomaccess - package net.imglib2.interpolation.randomaccess
 
net.imglib2.interpolation.stack - package net.imglib2.interpolation.stack
 
net.imglib2.iterator - package net.imglib2.iterator
 
net.imglib2.labeling - package net.imglib2.labeling
 
net.imglib2.loops - package net.imglib2.loops
 
net.imglib2.multithreading - package net.imglib2.multithreading
 
net.imglib2.neighborsearch - package net.imglib2.neighborsearch
 
net.imglib2.outofbounds - package net.imglib2.outofbounds
 
net.imglib2.parallel - package net.imglib2.parallel
 
net.imglib2.position - package net.imglib2.position
 
net.imglib2.position.transform - package net.imglib2.position.transform
 
net.imglib2.realtransform - package net.imglib2.realtransform
 
net.imglib2.realtransform.inverse - package net.imglib2.realtransform.inverse
 
net.imglib2.roi - package net.imglib2.roi
 
net.imglib2.roi.boundary - package net.imglib2.roi.boundary
 
net.imglib2.roi.composite - package net.imglib2.roi.composite
 
net.imglib2.roi.geom - package net.imglib2.roi.geom
 
net.imglib2.roi.geom.integer - package net.imglib2.roi.geom.integer
 
net.imglib2.roi.geom.real - package net.imglib2.roi.geom.real
 
net.imglib2.roi.labeling - package net.imglib2.roi.labeling
 
net.imglib2.roi.mask.integer - package net.imglib2.roi.mask.integer
 
net.imglib2.roi.mask.real - package net.imglib2.roi.mask.real
 
net.imglib2.roi.util - package net.imglib2.roi.util
 
net.imglib2.roi.util.iterationcode - package net.imglib2.roi.util.iterationcode
 
net.imglib2.test - package net.imglib2.test
 
net.imglib2.transform - package net.imglib2.transform
 
net.imglib2.transform.integer - package net.imglib2.transform.integer
 
net.imglib2.transform.integer.permutation - package net.imglib2.transform.integer.permutation
 
net.imglib2.transform.integer.shear - package net.imglib2.transform.integer.shear
 
net.imglib2.type - package net.imglib2.type
 
net.imglib2.type.label - package net.imglib2.type.label
 
net.imglib2.type.logic - package net.imglib2.type.logic
 
net.imglib2.type.numeric - package net.imglib2.type.numeric
 
net.imglib2.type.numeric.complex - package net.imglib2.type.numeric.complex
 
net.imglib2.type.numeric.integer - package net.imglib2.type.numeric.integer
 
net.imglib2.type.numeric.real - package net.imglib2.type.numeric.real
 
net.imglib2.type.operators - package net.imglib2.type.operators
 
net.imglib2.type.volatiles - package net.imglib2.type.volatiles
 
net.imglib2.util - package net.imglib2.util
 
net.imglib2.view - package net.imglib2.view
 
net.imglib2.view.composite - package net.imglib2.view.composite
 
net.imglib2.view.iteration - package net.imglib2.view.iteration
 
newInstanceForKey(Object, Object...) - Method in class net.imglib2.loops.ClassCopyProvider
Returns an instance of a copy of the original class, that has been provided to the constructor.
newThreads() - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
newThreads(int) - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
next() - Method in class net.imglib2.AbstractCursor
 
next() - Method in class net.imglib2.AbstractCursorInt
 
next() - Method in class net.imglib2.AbstractLocalizingCursor
 
next() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
next() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList.PixelListIterator
 
next() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
next() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
next() - Method in class net.imglib2.algorithm.region.CircleCursor
 
next() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
next() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
next() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
next() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
next() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
next() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
next() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
next() - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
next() - Method in class net.imglib2.img.sparse.NtreeCursor
 
next() - Method in class net.imglib2.KDTree.KDTreeCursor
 
next() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
next() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
next() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
next() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
next() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
next() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
next() - Method in class net.imglib2.view.iteration.SlicingCursor
next() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
nextImage(T, Interval) - Method in class net.imglib2.test.RandomImgs
Creates an image with randomized content.
nextImage(T, long...) - Method in class net.imglib2.test.RandomImgs
Creates an image with randomized content
nextRaster(long[], long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
Advance the position to the next raster.
nextRaster(long[], long[], Interval) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
Advance the position to the next raster, taking care that the raster is wholly within the given interval.
nextRaster(long[], long[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
nextRaster(long[], long[]) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
nextRaster(long[], long[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
nextRaster(long[], long[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
nextState - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
The state of the cursor.
NLinearInterpolator<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
Performs multi-linear interpolation.
NLinearInterpolator(NLinearInterpolator<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
NLinearInterpolator(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
NLinearInterpolator(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
NLinearInterpolator1D<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolator1D(NLinearInterpolator1D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
NLinearInterpolator1D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
NLinearInterpolator1D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
NLinearInterpolator2D<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolator2D(NLinearInterpolator2D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
NLinearInterpolator2D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
NLinearInterpolator2D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
NLinearInterpolator3D<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolator3D(NLinearInterpolator3D<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
NLinearInterpolator3D(RandomAccessible<T>, T) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
NLinearInterpolator3D(RandomAccessible<T>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
NLinearInterpolatorARGB - Class in net.imglib2.interpolation.randomaccess
N-linear interpolator for ARGB values with overflow check.
NLinearInterpolatorARGB(NLinearInterpolatorARGB) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
NLinearInterpolatorARGB(RandomAccessible<ARGBType>, ARGBType) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
NLinearInterpolatorARGB(RandomAccessible<ARGBType>) - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
NLinearInterpolatorARGBFactory - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolatorARGBFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
 
NLinearInterpolatorFactory<T extends NumericType<T>> - Class in net.imglib2.interpolation.randomaccess
 
NLinearInterpolatorFactory() - Constructor for class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
 
NNSRealPointCollection<L extends RealLocalizable> - Class in net.imglib2.roi.geom.real
A RealPointCollection which checks if points are in the collection by performing a NearestNeighborSearch on the provided IterableRealInterval.
NNSRealPointCollection(IterableRealInterval<L>) - Constructor for class net.imglib2.roi.geom.real.NNSRealPointCollection
NNSRealPointCollection(IterableRealInterval<L>, NearestNeighborSearch<L>) - Constructor for class net.imglib2.roi.geom.real.NNSRealPointCollection
NonNegativityDiffusionScheme2D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
NonNegativityDiffusionScheme2D(Img<T>, Img<FloatType>, float) - Constructor for class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme2D
 
NonNegativityDiffusionScheme2D(Img<T>, Img<FloatType>) - Constructor for class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme2D
 
NonNegativityDiffusionScheme2D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>, float) - Constructor for class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme2D
 
NonNegativityDiffusionScheme2D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>) - Constructor for class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme2D
 
NonNegativityDiffusionScheme3D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
NonNegativityDiffusionScheme3D(Img<T>, Img<FloatType>) - Constructor for class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme3D
 
NonNegativityDiffusionScheme3D(Img<T>, Img<FloatType>, float) - Constructor for class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme3D
 
NonNegativityDiffusionScheme3D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>) - Constructor for class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme3D
 
NonNegativityDiffusionScheme3D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>, float) - Constructor for class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme3D
 
Normalize - Class in net.imglib2.algorithm.stats
 
Normalize() - Constructor for class net.imglib2.algorithm.stats.Normalize
 
normalize(IterableInterval<T>, T, T) - Static method in class net.imglib2.algorithm.stats.Normalize
Normalize values of an IterableInterval to the range [min, max].
normalize(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
normalize a, i.e., scale to unit length.
normalizeMinPeakValue - Variable in class net.imglib2.algorithm.dog.DogDetection
 
NormMinMax<A extends RealType<A>> - Class in net.imglib2.algorithm.function
TODO
NormMinMax(double, double) - Constructor for class net.imglib2.algorithm.function.NormMinMax
 
NOT(Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
not(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Remove this region from the composite region of interest
not() - Method in interface net.imglib2.type.BooleanType
 
not() - Method in class net.imglib2.type.logic.BitType
 
not() - Method in class net.imglib2.type.logic.BoolType
 
not() - Method in class net.imglib2.type.logic.NativeBoolType
 
notEqual(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
NotEqual - Class in net.imglib2.algorithm.math
 
NotEqual(Object, Object) - Constructor for class net.imglib2.algorithm.math.NotEqual
 
NotEquality<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
NotEquality(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.NotEquality
 
NotLogical - Class in net.imglib2.algorithm.math
 
NotLogical(Object) - Constructor for class net.imglib2.algorithm.math.NotLogical
 
nRows - Variable in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
nSource - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence
 
nTarget - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence
 
Ntree<T extends Comparable<T>> - Class in net.imglib2.img.sparse
N-dimensional equivalent of a quad/oct-tree.
Ntree(long[], T) - Constructor for class net.imglib2.img.sparse.Ntree
Create a ntree structure capable of representing an array of the given dimensions.
Ntree.NtreeNode<T> - Class in net.imglib2.img.sparse
 
NtreeAccess<L extends Comparable<L>,A extends NtreeAccess<L,A>> - Interface in net.imglib2.img.sparse
 
NtreeCursor<T extends NativeType<T>> - Class in net.imglib2.img.sparse
 
NtreeCursor(NtreeImg<T, ?>) - Constructor for class net.imglib2.img.sparse.NtreeCursor
 
NtreeImg<T extends NativeType<T>,A extends NtreeAccess<?,A>> - Class in net.imglib2.img.sparse
 
NtreeImg(A, long[], Fraction) - Constructor for class net.imglib2.img.sparse.NtreeImg
 
NtreeImg.PositionProvider - Interface in net.imglib2.img.sparse
 
NtreeImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.sparse
 
NtreeImgFactory(T) - Constructor for class net.imglib2.img.sparse.NtreeImgFactory
 
NtreeImgFactory() - Constructor for class net.imglib2.img.sparse.NtreeImgFactory
Deprecated.
NtreeNode(Ntree.NtreeNode<T>, T) - Constructor for class net.imglib2.img.sparse.Ntree.NtreeNode
 
NtreeRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.sparse
 
NtreeRandomAccess(NtreeImg<T, ?>) - Constructor for class net.imglib2.img.sparse.NtreeRandomAccess
 
number(Number) - Static method in class net.imglib2.algorithm.math.ImgMath
 
numberOfPoles - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
numberOfSlices(long[]) - Static method in class net.imglib2.img.planar.PlanarImg
How many slices has a PlanarImg with the given dimensions?
NumberSource - Class in net.imglib2.algorithm.math
 
NumberSource(Number) - Constructor for class net.imglib2.algorithm.math.NumberSource
 
numChannels - Variable in class net.imglib2.view.composite.NumericComposite.Factory
 
numChannels - Variable in class net.imglib2.view.composite.RealComposite.Factory
 
numDimensions() - Method in class net.imglib2.AbstractEuclideanSpace
 
numDimensions() - Method in class net.imglib2.AbstractWrappedLocalizable
 
numDimensions() - Method in class net.imglib2.AbstractWrappedRealInterval
 
numDimensions() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
numDimensions() - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
numDimensions() - Method in class net.imglib2.algorithm.kdtree.SplitHyperPlaneKDTree
 
numDimensions() - Method in class net.imglib2.algorithm.kdtree.VolumetricSearch
 
numDimensions() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsAccessible
 
numDimensions() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsAccessible
 
numDimensions() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsAccessible
 
numDimensions() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsAccessible
 
numDimensions() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsAccessible
 
numDimensions() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
numDimensions() - Method in class net.imglib2.algorithm.region.CircleCursor
 
numDimensions() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
numDimensions() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
numDimensions() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
numDimensions() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
numDimensions() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
numDimensions() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
numDimensions() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
numDimensions() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
numDimensions() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
numDimensions() - Method in interface net.imglib2.EuclideanSpace
Gets the space's number of dimensions.
numDimensions() - Method in class net.imglib2.FinalDimensions
 
numDimensions() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
numDimensions() - Method in class net.imglib2.histogram.Histogram1d
Return the number of dimensions of the frequency distribution of this histogram.
numDimensions() - Method in class net.imglib2.histogram.HistogramNd
Return the number of dimensions of the frequency distribution of this histogram.
numDimensions() - Method in class net.imglib2.img.AbstractImg
 
numDimensions() - Method in class net.imglib2.img.cell.Cell
 
numDimensions() - Method in class net.imglib2.img.cell.CellGrid
 
numDimensions() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
numDimensions() - Method in class net.imglib2.interpolation.Interpolant
 
numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
numDimensions() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
numDimensions() - Method in class net.imglib2.KDTree.KDTreeCursor
 
numDimensions() - Method in class net.imglib2.KDTree
 
numDimensions() - Method in class net.imglib2.KDTreeNode
 
numDimensions() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
numDimensions() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
numDimensions() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
numDimensions() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
numDimensions() - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
numDimensions() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
numDimensions() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
numDimensions() - Method in class net.imglib2.position.AbstractFunctionEuclideanSpace
 
numDimensions() - Method in class net.imglib2.position.PositionRandomAccessible
 
numDimensions() - Method in class net.imglib2.position.RealPositionRealRandomAccessible
 
numDimensions() - Method in class net.imglib2.RealPointSampleList
 
numDimensions() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
numDimensions() - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
numDimensions() - Method in class net.imglib2.realtransform.AbstractScale
 
numDimensions() - Method in class net.imglib2.realtransform.AbstractTranslation
 
numDimensions() - Method in class net.imglib2.realtransform.AffineTransform2D
 
numDimensions() - Method in class net.imglib2.realtransform.AffineTransform3D
 
numDimensions() - Method in class net.imglib2.realtransform.InversePerspective3D
 
numDimensions() - Method in class net.imglib2.realtransform.Perspective3D
 
numDimensions() - Method in class net.imglib2.realtransform.PositionRandomAccessible
 
numDimensions() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible
 
numDimensions() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible
 
numDimensions() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
numDimensions - Variable in class net.imglib2.realtransform.StackingRealRandomAccessible
 
numDimensions() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible
 
numDimensions() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
numDimensions() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
numDimensions() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
numDimensions() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
numDimensions() - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
numDimensions() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
numDimensions() - Method in interface net.imglib2.roi.geom.real.Polygon2D
 
numDimensions() - Method in class net.imglib2.transform.integer.BoundingBox
 
numDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
numDimensions() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
numDimensions() - Method in class net.imglib2.view.composite.CompositeView
 
numDimensions() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
numDimensions() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
numDimensions() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
numDimensions - Variable in class net.imglib2.view.HyperSlice
 
numDimensions() - Method in class net.imglib2.view.HyperSlice
 
numDimensions - Variable in class net.imglib2.view.HyperSlicesView
 
numDimensions() - Method in class net.imglib2.view.HyperSlicesView
 
numDimensions() - Method in class net.imglib2.view.MixedTransformView
 
numDimensions() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
numDimensions() - Method in class net.imglib2.view.RandomAccessiblePair
 
numDimensions() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
numDimensions() - Method in class net.imglib2.view.StackView.DefaultRA
 
numDimensions() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
numDimensions() - Method in class net.imglib2.view.SubsampleView
 
numDimensions() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
numDimensions() - Method in class net.imglib2.view.TransformView
 
numElements(long[]) - Static method in class net.imglib2.img.AbstractImg
 
numElements(Dimensions) - Static method in class net.imglib2.util.Intervals
Compute the number of elements contained in an (integer) Interval .
numElements(int...) - Static method in class net.imglib2.util.Intervals
Compute the number of elements contained in an (integer) interval.
numElements(long...) - Static method in class net.imglib2.util.Intervals
Compute the number of elements contained in an (integer) interval.
numEntities - Variable in class net.imglib2.img.AbstractNativeImg
 
numEntities - Variable in class net.imglib2.img.AbstractNativeLongAccessImg
 
numEntities(Fraction) - Method in class net.imglib2.img.imageplus.ImagePlusImg
 
numEntities(long[], Fraction) - Static method in class net.imglib2.img.unsafe.UnsafeImgFactory
 
numEntitiesRangeCheck(long[], Fraction) - Static method in class net.imglib2.img.array.ArrayImgFactory
 
NumericComposite<T extends NumericType<T>> - Class in net.imglib2.view.composite
A vector of NumericType scalars.
NumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.NumericComposite
 
NumericComposite.Factory<T extends NumericType<T>> - Class in net.imglib2.view.composite
 
NumericSource<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
NumericSource(O, Number) - Constructor for class net.imglib2.algorithm.math.execution.NumericSource
 
NumericType<T extends NumericType<T>> - Interface in net.imglib2.type.numeric
TODO
numIoThreads(int) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions
The specified number of threads is started to handle asynchronous writing of values that are evicted from the memory cache.
numIoThreads() - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
numLists() - Method in class net.imglib2.labeling.LabelingMapping
Deprecated.
Returns the number of indexed labeling lists
numNeighbors() - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Get the number of points found within radius after a RadiusNeighborSearch.search(RealLocalizable, double, boolean).
numNeighbors() - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
numPixels - Variable in class net.imglib2.img.AbstractImg
 
numPolTerms(int) - Static method in class net.imglib2.realtransform.PolynomialTransform2D
Calculate the number of polynomial terms for a 2d polynomial transform of given order.
numSets() - Method in class net.imglib2.roi.labeling.LabelingMapping
Returns the number of indexed labeling sets
numSlices - Variable in class net.imglib2.img.planar.PlanarImg
 
numSlices() - Method in class net.imglib2.img.planar.PlanarImg
 
numSourceDimensions() - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
numSourceDimensions() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
numSourceDimensions() - Method in class net.imglib2.realtransform.AbstractScale
 
numSourceDimensions() - Method in class net.imglib2.realtransform.AbstractTranslation
 
numSourceDimensions() - Method in class net.imglib2.realtransform.AffineTransform2D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.AffineTransform3D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
numSourceDimensions() - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
numSourceDimensions() - Method in class net.imglib2.realtransform.HomographyTransform2D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
numSourceDimensions() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
numSourceDimensions() - Method in class net.imglib2.realtransform.InversePerspective3D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.InverseRealTransform
 
numSourceDimensions() - Method in class net.imglib2.realtransform.Perspective3D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.PositionFieldTransform
 
numSourceDimensions() - Method in interface net.imglib2.realtransform.RealTransform
Returns n, the minimal number of dimension of the source vector.
numSourceDimensions() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
numSourceDimensions() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
numSourceDimensions() - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
numSourceDimensions - Variable in class net.imglib2.transform.integer.MixedTransform
dimension of source vector.
numSourceDimensions() - Method in class net.imglib2.transform.integer.MixedTransform
 
numSourceDimensions - Variable in class net.imglib2.transform.integer.permutation.PermutationTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
numSourceDimensions - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
numSourceDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
dimension of source vector.
numSourceDimensions() - Method in class net.imglib2.transform.integer.SequentializeTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
numSourceDimensions - Variable in class net.imglib2.transform.integer.SlicingTransform
dimension of source vector.
numSourceDimensions() - Method in class net.imglib2.transform.integer.SlicingTransform
 
numSourceDimensions() - Method in class net.imglib2.transform.InverseTransform
 
numSourceDimensions() - Method in interface net.imglib2.transform.Transform
Returns n, the dimension of the source vector.
numTargetDimensions() - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
numTargetDimensions() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
numTargetDimensions() - Method in class net.imglib2.realtransform.AbstractScale
 
numTargetDimensions() - Method in class net.imglib2.realtransform.AbstractTranslation
 
numTargetDimensions() - Method in class net.imglib2.realtransform.AffineTransform2D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.AffineTransform3D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.ClippedTransitionRealTransform
 
numTargetDimensions() - Method in class net.imglib2.realtransform.ExplicitInvertibleRealTransform
 
numTargetDimensions() - Method in class net.imglib2.realtransform.HomographyTransform2D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.InvertibleTransformByGradientDescent
 
numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
numTargetDimensions() - Method in class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
numTargetDimensions() - Method in class net.imglib2.realtransform.InversePerspective3D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.InverseRealTransform
 
numTargetDimensions() - Method in class net.imglib2.realtransform.Perspective3D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.PositionFieldTransform
 
numTargetDimensions() - Method in interface net.imglib2.realtransform.RealTransform
Returns m, the minimal dimension of the target vector.
numTargetDimensions() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
numTargetDimensions() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
numTargetDimensions() - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
numTargetDimensions - Variable in class net.imglib2.transform.integer.AbstractMixedTransform
dimension of target vector.
numTargetDimensions() - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
numTargetDimensions - Variable in class net.imglib2.transform.integer.permutation.PermutationTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
numTargetDimensions - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
numTargetDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
dimension of target vector.
numTargetDimensions() - Method in class net.imglib2.transform.integer.SequentializeTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
numTargetDimensions() - Method in class net.imglib2.transform.InverseTransform
 
numTargetDimensions() - Method in interface net.imglib2.transform.Transform
Returns m, the dimension of the target vector.
numThreads - Variable in class net.imglib2.algorithm.dog.DogDetection
 
numThreads - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
numThreads - Variable in class net.imglib2.algorithm.MultiThreadedAlgorithm
 
numThreads(int) - Static method in class net.imglib2.parallel.TaskExecutors
TaskExecutor that uses the given number or threads.
numVertices() - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
 
numVertices() - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
numVertices() - Method in interface net.imglib2.roi.geom.real.Polyshape
Returns the number of vertices in the shape.

O

Observation - Class in net.imglib2.algorithm.localization
A general-use class that can store the observations as a double array, and their coordinates as a 2D double array.
Observation() - Constructor for class net.imglib2.algorithm.localization.Observation
 
of(Predicate<?>) - Static method in enum net.imglib2.roi.BoundaryType
 
of(Predicate<?>) - Static method in class net.imglib2.roi.Bounds.IntBounds
 
of(Interval) - Static method in class net.imglib2.roi.Bounds.IntBounds
 
of(Predicate<?>) - Static method in class net.imglib2.roi.Bounds.RealBounds
 
of(RealInterval) - Static method in class net.imglib2.roi.Bounds.RealBounds
 
of(Predicate<?>) - Static method in enum net.imglib2.roi.KnownConstant
 
ofAccess(Object) - Static method in enum net.imglib2.img.basictypeaccess.AccessFlags
 
ofConsumer(Consumer<T>) - Static method in class net.imglib2.algorithm.util.ParallelizeOverBlocks
Utility method to turn a Consumer into a Function.
offset(RandomAccessible<T>, long[]) - Static method in class net.imglib2.algorithm.math.ImgMath
 
offset(IFunction, long[]) - Static method in class net.imglib2.algorithm.math.ImgMath
 
offset - Variable in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
offset - Variable in class net.imglib2.img.array.AbstractArrayCursor
Offset of this cursor
offset - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Offset of this cursor.
offset - Variable in class net.imglib2.img.unsafe.AbstractUnsafeCursor
Offset of this cursor
offset - Variable in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
Offset of this cursor.
offset - Variable in class net.imglib2.position.transform.FloorOffset
 
offset - Variable in class net.imglib2.roi.util.OffsetLocalizable
 
offset(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
Deprecated.
offset(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
OffsetableIntervalIterator - Class in net.imglib2.iterator
A IntervalIterator that has an adjustable offset
OffsetableIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.OffsetableIntervalIterator
 
OffsetableLocalizingIntervalIterator - Class in net.imglib2.iterator
A LocalizingIntervalIterator that has an adjustable offset
OffsetableLocalizingIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
OffsetableLocalizingIntervalIterator(int[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
OffsetableLocalizingIntervalIterator(long[], long[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
OffsetableLocalizingIntervalIterator(int[], int[]) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
OffsetableLocalizingIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
 
offsetInterval(RandomAccessible<T>, long[], long[]) - Static method in class net.imglib2.view.Views
Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.
offsetInterval(RandomAccessible<T>, Interval) - Static method in class net.imglib2.view.Views
Define an interval on a RandomAccessible and translate it such that the min corner is at the origin.
OffsetLocalizable<L extends Localizable> - Class in net.imglib2.roi.util
A Localizable that is the location of another Localizable plus an offset.
OffsetLocalizable(L, long[]) - Constructor for class net.imglib2.roi.util.OffsetLocalizable
 
OffsetPositionableLocalizable<P extends Positionable & Localizable> - Class in net.imglib2.roi.util
A Localizable Positionable that is the position of another Localizable Positionable with an offset.
OffsetPositionableLocalizable(P, long[]) - Constructor for class net.imglib2.roi.util.OffsetPositionableLocalizable
 
OffsetSource<I extends RealType<I>> - Class in net.imglib2.algorithm.math
 
OffsetSource(IFunction, long[]) - Constructor for class net.imglib2.algorithm.math.OffsetSource
 
OFunction<O extends RealType<O>> - Interface in net.imglib2.algorithm.math.abstractions
 
one - Variable in class net.imglib2.algorithm.math.abstractions.ABooleanFunction
 
OneCursorLoop(Consumer<A>, Cursor<A>) - Constructor for class net.imglib2.loops.FastCursorLoops.OneCursorLoop
 
oneDimensional() - Static method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
ONESIXTH - Static variable in class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
ONESIXTH - Static variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
onRemoval(K, D) - Method in interface net.imglib2.cache.CacheRemover
Called when an entry is evicted from the cache.
onRemoval(Long, A) - Method in class net.imglib2.cache.img.DirtyDiskCellCache
 
onRemoval(Long, A) - Method in class net.imglib2.cache.img.DiskCellCache
 
onRemoval(K, D) - Method in class net.imglib2.cache.IoSync
 
oobCellMax - Variable in class net.imglib2.img.cell.CellRandomAccess
 
oobCellMin - Variable in class net.imglib2.img.cell.CellRandomAccess
 
oobFactory - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
oobFactory - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
open(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the morphological opening operation on a RealType Img, using a list of Shapes as a structuring element.
open(Img<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the morphological opening operation on an Img of Comparable , using a list of Shapes as a structuring element.
open(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the morphological opening operation on a RealType Img, using a Shape as a structuring element.
open(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the morphological opening operation on an Img of Comparable , using a Shape as a structuring element.
open(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the morphological opening operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
open(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the morphological opening operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
open(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the morphological opening operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
open(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the morphological opening operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
openBox(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritableBox with open boundaries.
openEllipsoid(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Opening - Class in net.imglib2.algorithm.morphology
Morphological opening for ImgLib2.
openInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the opening morphological operation, on a source RandomAccessibleInterval using a list of Shapes as a flat structuring element.
openInPlace(RandomAccessibleInterval<T>, Interval, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the opening morphological operation, on a RandomAccessibleInterval using a list of Shapes as a flat structuring element.
openInPlace(RandomAccessibleInterval<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the opening morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
openInPlace(RandomAccessibleInterval<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Opening
Performs the opening morphological operation, on a RandomAccessibleInterval using a Shape as a flat structuring element.
openPolygon2D(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolygon2D from a list of vertices, with open boundaries.
openPolygon2D(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolygon2D from a list of (x, y) coordinates, with open boundaries.
openSphere(double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks
openSuperEllipsoid(double[], double[], double) - Static method in class net.imglib2.roi.geom.GeomMasks
OpenWritableBox - Class in net.imglib2.roi.geom.real
A Box which contains no edge points defined by the min and max values in each dimension.
OpenWritableBox(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.OpenWritableBox
Creates an n-d rectangular RealMaskRealInterval in real space.
OpenWritableEllipsoid - Class in net.imglib2.roi.geom.real
A Ellipsoid which does not contain any edge points, defined by a center and semi-axis lengths.
OpenWritableEllipsoid(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.OpenWritableEllipsoid
Creates an n-d ellipsoid, where n is determined by the length of the smaller array.
OpenWritablePolygon2D - Class in net.imglib2.roi.geom.real
A Polygon2D which contains no boundary points, and is defined by the provided vertices.
OpenWritablePolygon2D(List<? extends RealLocalizable>) - Constructor for class net.imglib2.roi.geom.real.OpenWritablePolygon2D
 
OpenWritablePolygon2D(double[], double[]) - Constructor for class net.imglib2.roi.geom.real.OpenWritablePolygon2D
 
OpenWritableSphere - Class in net.imglib2.roi.geom.real
A Sphere which does not contain any boundary points.
OpenWritableSphere(double[], double) - Constructor for class net.imglib2.roi.geom.real.OpenWritableSphere
Creates an n-d sphere.
OpenWritableSuperEllipsoid - Class in net.imglib2.roi.geom.real
A SuperEllipsoid which does not contain any edge points.
OpenWritableSuperEllipsoid(double[], double[], double) - Constructor for class net.imglib2.roi.geom.real.OpenWritableSuperEllipsoid
Creates an n-d super ellipsoid, where n is determined by the length of the smaller array
operand(int) - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
 
operand(int) - Method in interface net.imglib2.roi.composite.CompositeMaskPredicate
 
operand(int) - Method in interface net.imglib2.roi.composite.UnaryCompositeMaskPredicate
 
operands() - Method in interface net.imglib2.roi.composite.BinaryCompositeMaskPredicate
 
operands() - Method in interface net.imglib2.roi.composite.CompositeMaskPredicate
Returns the list of operands, which were used to compute this Mask.
operands() - Method in interface net.imglib2.roi.composite.UnaryCompositeMaskPredicate
 
operation - Variable in class net.imglib2.algorithm.math.execution.FunctionCursor
 
operation - Variable in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
operator() - Method in interface net.imglib2.roi.composite.CompositeMaskPredicate
Returns the operation which lead to this mask.
operator() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
operator() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
operator() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
operator() - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
operator() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
operator() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
operator() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
operator() - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
operator() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
operator() - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
Operators - Class in net.imglib2.roi
MaskOperator interfaces and instances.
Operators() - Constructor for class net.imglib2.roi.Operators
 
Operators.BinaryMaskOperator - Class in net.imglib2.roi
 
Operators.MaskOperator - Interface in net.imglib2.roi
 
Operators.RealTransformMaskOperator - Class in net.imglib2.roi
Operators.MaskOperator for transforming RealMasks.
Operators.UnaryMaskOperator - Class in net.imglib2.roi
 
options() - Static method in class net.imglib2.cache.img.DiskCachedCellImgOptions
Create default DiskCachedCellImgOptions.
options() - Static method in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions
OR(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
OR(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
or(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
 
OR - Static variable in class net.imglib2.roi.Bounds
 
or(B) - Method in class net.imglib2.roi.Bounds
 
or(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Make the region of interest a combination of the new rest and all previous
or(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
 
or(MaskInterval) - Method in interface net.imglib2.roi.MaskInterval
 
or(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
 
or(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
 
or(MaskInterval, MaskInterval) - Static method in class net.imglib2.roi.Masks
 
or(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
 
or(RealMaskRealInterval, RealMaskRealInterval) - Static method in class net.imglib2.roi.Masks
 
OR - Static variable in class net.imglib2.roi.Operators
 
or(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
 
or(RealMaskRealInterval) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
or(T) - Method in interface net.imglib2.type.BooleanType
 
or(BitType) - Method in class net.imglib2.type.logic.BitType
 
or(boolean) - Method in class net.imglib2.type.logic.BoolType
 
or(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
or(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
order - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
order - Variable in class net.imglib2.algorithm.bspline.BSplineLazyCoefficientsInterpolatorFactory
 
order - Variable in class net.imglib2.algorithm.integral.IntegralImg
 
order - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineCoefficientsInterpolatorFactory
 
order - Variable in class net.imglib2.realtransform.PolynomialTransform2D
order of the polynomial transform
orderMinMax() - Method in class net.imglib2.transform.integer.BoundingBox
flip coordinates between corner1 and corner2 such that corner1 is the min of the bounding box and corner2 is the max.
orderOf(int) - Static method in class net.imglib2.realtransform.PolynomialTransform2D
Calculate the maximum order of a polynom whose number of polyynomial terms is smaller or equal a given number.
origin() - Method in class net.imglib2.roi.labeling.LabelRegion
 
origin() - Method in interface net.imglib2.roi.PositionableIterableInterval
Get the Positionable, Localizable origin of this interval.
origin() - Method in class net.imglib2.roi.util.PositionableInterval
Get the Positionable, Localizable origin of this interval.
originalInterval - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
originalPeak - Variable in class net.imglib2.algorithm.localextrema.RefinedPeak
 
OrLogical - Class in net.imglib2.algorithm.math
 
OrLogical(Object, Object) - Constructor for class net.imglib2.algorithm.math.OrLogical
 
OrLogical(Object...) - Constructor for class net.imglib2.algorithm.math.OrLogical
 
outConverter - Variable in class net.imglib2.algorithm.math.execution.FunctionCursor
 
outConverter - Variable in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
outer(double[], double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
compute outer product, set C = a * b^T.
outOfBounds - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
OutOfBounds<T> - Interface in net.imglib2.outofbounds
 
outOfBounds - Variable in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
performs the actual moves and generates/queries a Type
OutOfBoundsBorder<T> - Class in net.imglib2.outofbounds
Repeat the boundary pixels.
OutOfBoundsBorder(OutOfBoundsBorder<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorder
 
OutOfBoundsBorder(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorder
 
OutOfBoundsBorderFactory<T,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
Strategy to repeat the boundary pixels (creates OutOfBoundsBorder).
OutOfBoundsBorderFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsBorderFactory
 
OutOfBoundsConstantValue<T> - Class in net.imglib2.outofbounds
 
OutOfBoundsConstantValue(OutOfBoundsConstantValue<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
OutOfBoundsConstantValue(F, T) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
OutOfBoundsConstantValueFactory<T,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
 
OutOfBoundsConstantValueFactory(T) - Constructor for class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
OutOfBoundsFactory<T,F> - Interface in net.imglib2.outofbounds
 
OutOfBoundsMirrorDoubleBoundary<T> - Class in net.imglib2.outofbounds
Coordinates out of image bounds are mirrored between boundary coordinates.
OutOfBoundsMirrorDoubleBoundary(OutOfBoundsMirrorDoubleBoundary<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
OutOfBoundsMirrorDoubleBoundary(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
OutOfBoundsMirrorExpWindowing<T extends NumericType<T>> - Class in net.imglib2.outofbounds
Adds a exponential windowing to the mirrored content outside the Interval boundaries
OutOfBoundsMirrorExpWindowing(OutOfBoundsMirrorExpWindowing<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
OutOfBoundsMirrorExpWindowing(F, int[], float) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
OutOfBoundsMirrorExpWindowingFactory<T extends NumericType<T>,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
TODO
OutOfBoundsMirrorExpWindowingFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
OutOfBoundsMirrorExpWindowingFactory(float) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
OutOfBoundsMirrorExpWindowingFactory(int) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
OutOfBoundsMirrorExpWindowingFactory(int[]) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
OutOfBoundsMirrorFactory<T,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
Create appropriate strategies that virtually mirror a RandomAccessible at its boundaries.
OutOfBoundsMirrorFactory(OutOfBoundsMirrorFactory.Boundary) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
OutOfBoundsMirrorFactory.Boundary - Enum in net.imglib2.outofbounds
 
OutOfBoundsMirrorSingleBoundary<T> - Class in net.imglib2.outofbounds
Coordinates out of image bounds are mirrored at boundary coordinates.
OutOfBoundsMirrorSingleBoundary(OutOfBoundsMirrorSingleBoundary<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
OutOfBoundsMirrorSingleBoundary(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
OutOfBoundsPeriodic<T> - Class in net.imglib2.outofbounds
Coordinates out of image bounds are periodically repeated.
OutOfBoundsPeriodic(OutOfBoundsPeriodic<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
OutOfBoundsPeriodic(F) - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
OutOfBoundsPeriodicFactory<T,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
Create appropriate strategies that virtually extend a RandomAccessibleInterval periodically.
OutOfBoundsPeriodicFactory() - Constructor for class net.imglib2.outofbounds.OutOfBoundsPeriodicFactory
 
outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
outOfBoundsRandomAccess - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
OutOfBoundsRandomValue<T extends RealType<T>> - Class in net.imglib2.outofbounds
Return a random value in a certain range when outside of the Interval
OutOfBoundsRandomValue(OutOfBoundsRandomValue<T>) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
OutOfBoundsRandomValue(F, T, Random, double, double) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
OutOfBoundsRandomValueFactory<T extends RealType<T>,F extends Interval & RandomAccessible<T>> - Class in net.imglib2.outofbounds
 
OutOfBoundsRandomValueFactory(T, double, double) - Constructor for class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
output - Variable in class net.imglib2.algorithm.labeling.Watershed
 
OutputAlgorithm<F> - Interface in net.imglib2.algorithm
TODO This interface should be empty and extend Callable<F>, Algorithm.
outputType - Variable in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
OverlappingLabels<T extends Comparable<T>> - Class in net.imglib2.roi.labeling
 
OverlappingLabels(RandomAccessibleInterval<LabelingType<T>>) - Constructor for class net.imglib2.roi.labeling.OverlappingLabels
 
owner - Variable in class net.imglib2.img.basictypelongaccess.unsafe.owning.AbstractOwningUnsafe
 
OwningByteUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
OwningByteUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
OwningByteUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
OwningCharUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
OwningCharUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
OwningCharUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
OwningDoubleUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
OwningDoubleUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
OwningDoubleUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
OwningFloatUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
OwningFloatUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
OwningFloatUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
OwningIntUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
OwningIntUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
OwningIntUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
OwningLongUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
OwningLongUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
OwningLongUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
OwningShortUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe.owning
 
OwningShortUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
OwningShortUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
OwningUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil.OwningUnsafe
 

P

p - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Period of the extended interval.
padding - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
paddingIntervalCentered(Interval, Dimensions) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes the padding interval required to perform an FFT when the padding dimensions are known.
paddingWidth - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
Pair<A,B> - Interface in net.imglib2.util
 
pair(RandomAccessible<A>, RandomAccessible<B>) - Static method in class net.imglib2.view.Views
Compose two RandomAccessible sources into a RandomAccessible of Pair.
PairOfPointsNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
 
PairOfPointsNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
PairOfPointsNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
PairOfPointsNeighborhoodCursor(RandomAccessibleInterval<T>, long[], PairOfPointsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
PairOfPointsNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
 
PairOfPointsNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
PairOfPointsNeighborhoodLocalizableSampler(RandomAccessible<T>, long[], PairOfPointsNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
PairOfPointsNeighborhoodLocalizableSampler(PairOfPointsNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
PairOfPointsNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
PairOfPointsNeighborhoodRandomAccess(RandomAccessible<T>, long[], PairOfPointsNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
PairOfPointsNeighborhoodRandomAccess(RandomAccessible<T>, long[], PairOfPointsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
PairOfPointsNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
PairOfPointsShape - Class in net.imglib2.algorithm.neighborhood
A Shape representing a pair of points.
PairOfPointsShape(long[]) - Constructor for class net.imglib2.algorithm.neighborhood.PairOfPointsShape
Create a new pair of points shape.
PairOfPointsShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
PairOfPointsShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 
parallelInto(RandomAccessibleInterval<O>) - Method in class net.imglib2.algorithm.math.Compute
Compute the result multithreaded into an ArrayImg of the given Type.
parallelInto(Converter<RealType<?>, C>, C, O, Converter<C, O>, RandomAccessibleInterval<O>) - Method in class net.imglib2.algorithm.math.Compute
Compute the result multithreaded into an ArrayImg of the given Type.
parallelIntoArrayImg() - Method in class net.imglib2.algorithm.math.Compute
Compute the result multithreaded into an ArrayImg of the same Type as the first image found, with mathematical operations using that same Type.
parallelIntoArrayImg(O) - Method in class net.imglib2.algorithm.math.Compute
Compute the result multithreaded into an ArrayImg of the given Type.
parallelIntoArrayImg(C, O) - Method in class net.imglib2.algorithm.math.Compute
Compute the result multithreaded into an ArrayImg of the given Type.
parallelIntoArrayImg(Converter<RealType<?>, C>, C, O, Converter<C, O>) - Method in class net.imglib2.algorithm.math.Compute
Compute the result multithreaded into an ArrayImg of the given Type.
Parallelization - Class in net.imglib2.parallel
This class allows to configure an algorithm for parallelization.
parallelize(Function<Interval, T>, Interval, int[], ExecutorService, int) - Static method in class net.imglib2.algorithm.util.ParallelizeOverBlocks
Submit blocked tasks and wait for execution.
parallelize(Function<Interval, T>, long[], long[], int[], ExecutorService, int) - Static method in class net.imglib2.algorithm.util.ParallelizeOverBlocks
Submit blocked tasks and wait for execution.
parallelize(Function<Interval, T>, List<Interval>, ExecutorService, int) - Static method in class net.imglib2.algorithm.util.ParallelizeOverBlocks
Submit blocked tasks and wait for execution.
parallelizeAndWait(Function<Interval, T>, Interval, int[], ExecutorService, int) - Static method in class net.imglib2.algorithm.util.ParallelizeOverBlocks
Submit blocked tasks and wait for execution.
parallelizeAndWait(Function<Interval, T>, long[], long[], int[], ExecutorService, int) - Static method in class net.imglib2.algorithm.util.ParallelizeOverBlocks
Submit blocked tasks and wait for execution.
parallelizeAndWait(Function<Interval, T>, List<Interval>, ExecutorService, int) - Static method in class net.imglib2.algorithm.util.ParallelizeOverBlocks
Submit blocked tasks and wait for execution.
ParallelizeOverBlocks - Class in net.imglib2.algorithm.util
 
ParallelizeOverBlocks() - Constructor for class net.imglib2.algorithm.util.ParallelizeOverBlocks
 
Parameters() - Constructor for class net.imglib2.algorithm.math.Compute.Parameters
 
parent - Variable in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
PartialComponent<T,C extends PartialComponent<T,C>> - Interface in net.imglib2.algorithm.componenttree
This interface is used by BuildComponentTree to build the component tree of an image.
PartialComponent.Generator<T,C extends PartialComponent<T,C>> - Interface in net.imglib2.algorithm.componenttree
Create new components.
PartialComponent.Handler<C> - Interface in net.imglib2.algorithm.componenttree
Handle completed components that are output by BuildComponentTree .
PartialDerivative - Class in net.imglib2.algorithm.gradient
 
PartialDerivative() - Constructor for class net.imglib2.algorithm.gradient.PartialDerivative
 
Partition - Class in net.imglib2.util
TODO
Partition() - Constructor for class net.imglib2.util.Partition
 
partitionSubList(int, int, byte[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, short[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, int[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, long[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, float[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, double[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, char[]) - Static method in class net.imglib2.util.Partition
Partition a subarray of values.
partitionSubList(int, int, List<T>, Comparator<? super T>) - Static method in class net.imglib2.util.Partition
Partition a sublist of values.
partitionSubList(int, int, List<T>) - Static method in class net.imglib2.util.Partition
Partition a sublist of values.
partitionSubList(ListIterator<T>, ListIterator<T>, Comparator<? super T>) - Static method in class net.imglib2.util.Partition
Partition a sublist.
partitionSubList(ListIterator<T>, ListIterator<T>) - Static method in class net.imglib2.util.Partition
Partition a sublist.
partitionSubList(int, int, List<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.Partition
Partition a sublist of values.
partitionSubList(int, int, List<T>, int[]) - Static method in class net.imglib2.util.Partition
Partition a sublist of values.
partitionSubList(ListIterator<T>, ListIterator<T>, int[], Comparator<? super T>) - Static method in class net.imglib2.util.Partition
Partition a sublist.
partitionSubList(ListIterator<T>, ListIterator<T>, int[]) - Static method in class net.imglib2.util.Partition
Partition a sublist.
PassThrough - Class in net.imglib2.algorithm.math.abstractions
Does nothing: the reInit method returns a copy of the encapsulated IFunction
PassThrough(Object) - Constructor for class net.imglib2.algorithm.math.abstractions.PassThrough
 
pastMax - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
pastMax - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
pause() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
Pause the queue.
pauseFor(long) - Method in class net.imglib2.cache.queue.FetcherThreads
Pause all Fetcher threads for the specified number of milliseconds.
pauseUntil(long) - Method in class net.imglib2.cache.queue.FetcherThreads
pause all Fetcher threads until the given time (see System.currentTimeMillis()).
PdeUtil - Class in net.imglib2.algorithm.pde
A collection of util static methods related to partial differential equations.
PdeUtil() - Constructor for class net.imglib2.algorithm.pde.PdeUtil
 
PeakFitter<T extends RealType<T>> - Class in net.imglib2.algorithm.localization
 
PeakFitter(RandomAccessibleInterval<T>, Collection<Localizable>, FunctionFitter, FitFunction, StartPointEstimator) - Constructor for class net.imglib2.algorithm.localization.PeakFitter
 
percentile(double[], double) - Static method in class net.imglib2.util.Util
Computes the percentile of a collection of doubles (percentile 0.5 roughly corresponds to median)
periodicLine(long, int[]) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Creates a new periodic line structuring element, that will iterate over 2 × span + 1 pixels as follow:
PeriodicLineNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
A neighborhood that iterates over what is termed "Periodic lines", and best explained in Ronald Jones and Pierre Soilles publication:
PeriodicLineNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
PeriodicLineNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
PeriodicLineNeighborhoodCursor(RandomAccessibleInterval<T>, long, int[], PeriodicLineNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
PeriodicLineNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
 
PeriodicLineNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
PeriodicLineNeighborhoodLocalizableSampler(RandomAccessible<T>, long, int[], PeriodicLineNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
PeriodicLineNeighborhoodLocalizableSampler(PeriodicLineNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
PeriodicLineNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
PeriodicLineNeighborhoodRandomAccess(RandomAccessible<T>, long, int[], PeriodicLineNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
PeriodicLineNeighborhoodRandomAccess(RandomAccessible<T>, long, int[], PeriodicLineNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
PeriodicLineNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
PeriodicLineShape - Class in net.imglib2.algorithm.neighborhood
A factory for Accessibles on PeriodicLineNeighborhoods, that iterate over what is termed "Periodic lines", and is best explained in Ronald Jones and Pierre Soilles publication:
PeriodicLineShape(long, int[]) - Constructor for class net.imglib2.algorithm.neighborhood.PeriodicLineShape
Creates a new periodic line shape, that will iterate over 2 × span + 1 pixels as follow:
PeriodicLineShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
PeriodicLineShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 
PermutationTransform - Class in net.imglib2.transform.integer.permutation
Bijective integer transform mapping between integer coordinates in [0,n-1].
PermutationTransform(int[], int, int) - Constructor for class net.imglib2.transform.integer.permutation.PermutationTransform
 
permute(ImgPlus<T>, int, int) - Static method in class net.imglib2.img.display.imagej.ImgPlusViews
permute(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Create view with permuted axes.
permute(RandomAccessibleInterval<T>, int, int) - Static method in class net.imglib2.view.Views
Create view with permuted axes.
permute(int, int, int) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.permute(RandomAccessible, int, int).
permuteAxes(Interval, int, int) - Static method in class net.imglib2.util.Intervals
Create an interval with permuted axes.
permuteCoordinateInverse(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
permuteCoordinates(RandomAccessibleInterval<T>, int[]) - Static method in class net.imglib2.view.Views
Bijective permutation of the integer coordinates in each dimension of a RandomAccessibleInterval.
permuteCoordinates(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
Bijective permutation of the integer coordinates of one dimension of a RandomAccessibleInterval.
permuteCoordinatesInverse(RandomAccessibleInterval<T>, int[]) - Static method in class net.imglib2.view.Views
Inverse Bijective permutation of the integer coordinates in each dimension of a RandomAccessibleInterval.
permuteCoordinatesInverse(RandomAccessibleInterval<T>, int[], int) - Static method in class net.imglib2.view.Views
Inverse bijective permutation of the integer coordinates of one dimension of a RandomAccessibleInterval.
PeronaMalikAnisotropicDiffusion<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
Perona & Malik Anisotropic diffusion
PeronaMalikAnisotropicDiffusion(Img<T>, double, PeronaMalikAnisotropicDiffusion.DiffusionFunction) - Constructor for class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Instantiate the Perona & Malik anisotropic diffusion process, with a custom diffusion function.
PeronaMalikAnisotropicDiffusion(RandomAccessibleInterval<T>, ImgFactory<FloatType>, double, PeronaMalikAnisotropicDiffusion.DiffusionFunction) - Constructor for class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Instantiate the Perona & Malik anisotropic diffusion process, with a custom diffusion function.
PeronaMalikAnisotropicDiffusion(Img<T>, double, double) - Constructor for class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Instantiate the Perona & Malik anisotropic diffusion process, with the default strong-edge diffusion function.
PeronaMalikAnisotropicDiffusion(RandomAccessibleInterval<T>, ImgFactory<FloatType>, double, double) - Constructor for class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Instantiate the Perona & Malik anisotropic diffusion process, with the default strong-edge diffusion function.
PeronaMalikAnisotropicDiffusion.DiffusionFunction - Interface in net.imglib2.algorithm.pde
The interface that function suitable to be diffusion function must implement.
PeronaMalikAnisotropicDiffusion.StrongEdgeEnhancer - Class in net.imglib2.algorithm.pde
The first diffusion function proposed by Perona & Malik.
PeronaMalikAnisotropicDiffusion.WideRegionEnhancer - Class in net.imglib2.algorithm.pde
The second diffusion function proposed by Perona & Malik.
persist(K) - Method in interface net.imglib2.cache.AbstractCache
TODO Persist entry through any backing cache end eventually a CacheRemover.
persist(K, D) - Method in interface net.imglib2.cache.CacheRemover
TODO
persist(Long, A) - Method in class net.imglib2.cache.img.DirtyDiskCellCache
 
persist(Long, A) - Method in class net.imglib2.cache.img.DiskCellCache
 
persist(K, D) - Method in class net.imglib2.cache.IoSync
 
persist(K) - Method in class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
persist(K) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
persist(K) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 
persist(K) - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
 
persist(K) - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
persist(K) - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
 
persist(K) - Method in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
persist(K) - Method in class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
persist(K) - Method in class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
persist(K) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
persist(K) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
persist(K) - Method in class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
persistAll() - Method in interface net.imglib2.cache.AbstractCache
TODO
persistAll() - Method in class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
persistAll() - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
persistAll() - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 
persistAll() - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
 
persistAll() - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
persistAll() - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
 
persistAll() - Method in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
persistAll() - Method in class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
persistAll() - Method in class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
persistAll() - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
persistAll() - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
persistAll() - Method in class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
persistIf(Predicate<K>) - Method in interface net.imglib2.cache.AbstractCache
TODO
persistIf(Predicate<K>) - Method in class net.imglib2.cache.ref.BoundedSoftRefLoaderCache
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderCache
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.ref.GuardedStrongRefLoaderRemoverCache
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.ref.SoftRefLoaderCache
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.ref.WeakRefLoaderCache
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.util.AbstractCacheKeyAdapter
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.util.CacheAsUncheckedCacheAdapter
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.util.LoaderCacheAsCacheAdapter
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsLoaderCacheAdapter
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.util.LoaderRemoverCacheAsRemoverCacheAdapter
 
persistIf(Predicate<K>) - Method in class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
Perspective3D - Class in net.imglib2.realtransform
3d perspective transformation.
Perspective3D() - Constructor for class net.imglib2.realtransform.Perspective3D
 
PickImagePeaks<T extends RealType<T>> - Class in net.imglib2.algorithm.math
This class implements a very simple peak-picker, with optional ellipsoidal peak suppression.
PickImagePeaks(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.math.PickImagePeaks
 
pickLinePeaks(RandomAccessibleInterval<T>, long) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Pick vote space peaks with a LocalExtrema.
pickLinePeaks(RandomAccessibleInterval<T>, T) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Pick vote space peaks with a LocalExtrema.
piSquare - Static variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
PixelIntensity(long[], long[], double, long, List<U>) - Constructor for class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
PixelList - Class in net.imglib2.algorithm.componenttree.pixellist
A singly-linked list of pixel locations stored in a RandomAccessible.
PixelList(RandomAccess<LongType>, long[]) - Constructor for class net.imglib2.algorithm.componenttree.pixellist.PixelList
 
PixelList(PixelList) - Constructor for class net.imglib2.algorithm.componenttree.pixellist.PixelList
 
PixelList.PixelListIterator - Class in net.imglib2.algorithm.componenttree.pixellist
 
PixelListComponent<T extends Type<T>> - Class in net.imglib2.algorithm.componenttree.pixellist
A connected component of the image thresholded at PixelListComponent.value().
PixelListComponentTree<T extends Type<T>> - Class in net.imglib2.algorithm.componenttree.pixellist
Component tree of an image stored as a tree of PixelListComponents.
PixelListIterator() - Constructor for class net.imglib2.algorithm.componenttree.pixellist.PixelList.PixelListIterator
 
pixelSize - Variable in class net.imglib2.algorithm.dog.DogDetection
 
PlanarAccess<A> - Interface in net.imglib2.img.basictypeaccess
Interface allowing access to data on a plane-by-plane basis.
PlanarCursor<T extends NativeType<T>> - Class in net.imglib2.img.planar
Basic Iterator for PlanarContainers
PlanarCursor(PlanarCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarCursor
 
PlanarCursor(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor
 
PlanarCursor1D<T extends NativeType<T>> - Class in net.imglib2.img.planar
Basic Iterator for 1d PlanarContainers
PlanarCursor1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor1D
 
PlanarCursor2D<T extends NativeType<T>> - Class in net.imglib2.img.planar
Basic Iterator for 2d PlanarContainers
PlanarCursor2D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarCursor2D
 
PlanarImg<T extends NativeType<T>,A extends ArrayDataAccess<A>> - Class in net.imglib2.img.planar
A NativeImg that stores data in an list of primitive arrays, one per image plane.
PlanarImg(List<A>, long[], Fraction) - Constructor for class net.imglib2.img.planar.PlanarImg
 
PlanarImg(long[], Fraction) - Constructor for class net.imglib2.img.planar.PlanarImg
Deprecated.
PlanarImg.PlanarContainerSampler - Interface in net.imglib2.img.planar
This interface is implemented by all samplers on the PlanarImg.
PlanarImgContainerSamplerImpl - Class in net.imglib2.display.projector.specialized
Helps to sample a planar image by keeping track of the current slice.
PlanarImgContainerSamplerImpl(int) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
 
PlanarImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.planar
Factory that creates an appropriate PlanarImg.
PlanarImgFactory(T) - Constructor for class net.imglib2.img.planar.PlanarImgFactory
 
PlanarImgFactory() - Constructor for class net.imglib2.img.planar.PlanarImgFactory
Deprecated.
PlanarImgs - Class in net.imglib2.img.planar
Convenience factory methods for creation of PlanarImg instances with the most common pixel Type variants.
PlanarImgToVirtualStack - Class in net.imglib2.img.display.imagej
Utility class to convert a PlanarImg to an ImagePlus without copying data.
PlanarImgXYByteProjector<A extends GenericByteType<A>> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from a ByteType PlanarImg.
PlanarImgXYByteProjector(PlanarImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgXYByteProjector
Normalizes a PlanarImg and writes the result into target.
PlanarImgXYShortProjector<A extends GenericShortType<A>> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ShortType PlanarImg.
PlanarImgXYShortProjector(PlanarImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.PlanarImgXYShortProjector
Normalizes a PlanarImg and writes the result into target.
PlanarLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.planar
Localizing Iterator for a PlanarContainers
PlanarLocalizingCursor(PlanarLocalizingCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor
 
PlanarLocalizingCursor(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor
 
PlanarLocalizingCursor1D<T extends NativeType<T>> - Class in net.imglib2.img.planar
TODO
PlanarLocalizingCursor1D(PlanarLocalizingCursor1D<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
PlanarLocalizingCursor1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
PlanarLocalizingCursor2D<T extends NativeType<T>> - Class in net.imglib2.img.planar
TODO
PlanarLocalizingCursor2D(PlanarLocalizingCursor2D<T>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
PlanarLocalizingCursor2D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
PlanarPlaneSubsetCursor<T extends NativeType<T>> - Class in net.imglib2.img.planar
Basic Iterator for PlanarContainers
PlanarPlaneSubsetCursor(PlanarPlaneSubsetCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Copy Constructor
PlanarPlaneSubsetCursor(PlanarImg<T, ?>, Interval) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetCursor
Constructor
PlanarPlaneSubsetLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.planar
Cursor optimized for one plane in an PlanarImg.
PlanarPlaneSubsetLocalizingCursor(PlanarPlaneSubsetLocalizingCursor<T>) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Copy Constructor
PlanarPlaneSubsetLocalizingCursor(PlanarImg<T, ?>, Interval) - Constructor for class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
Constructor
PlanarRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.planar
PlanarRandomAccess(PlanarRandomAccess<T>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess
 
PlanarRandomAccess(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess
 
PlanarRandomAccess1D<T extends NativeType<T>> - Class in net.imglib2.img.planar
RandomAccess for a 1-dimensional PlanarImg.
PlanarRandomAccess1D(PlanarImg<T, ?>) - Constructor for class net.imglib2.img.planar.PlanarRandomAccess1D
 
pnpoly(TDoubleArrayList, TDoubleArrayList, RealLocalizable) - Static method in class net.imglib2.roi.geom.GeomMaths
Return true if the given point is contained inside the boundary.
Point - Class in net.imglib2
A Point is a position in Euclidean space specified in integer coordinates.
Point(long[], boolean) - Constructor for class net.imglib2.Point
Protected constructor that can re-use the passed position array.
Point(int) - Constructor for class net.imglib2.Point
Create a point in nDimensional space initialized to 0,0,...
Point(long...) - Constructor for class net.imglib2.Point
Create a point at a definite location in a space of the dimensionality of the position.
Point(int...) - Constructor for class net.imglib2.Point
Create a point at a definite location in a space of the dimensionality of the position.
Point(Localizable) - Constructor for class net.imglib2.Point
Create a point using the position and dimensionality of a Localizable
pointMask(double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePointMask from double[] coordinates.
pointMask(RealLocalizable) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePointMask from a RealLocalizable point.
PointMask - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval representing a single point in n-d real space.
points() - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
 
points() - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
points() - Method in interface net.imglib2.roi.geom.real.RealPointCollection
Returns the points in the collection.
points - Variable in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
PointSampleList<T> - Class in net.imglib2
A list of data samples at explicit integer coordinates.
PointSampleList(int) - Constructor for class net.imglib2.PointSampleList
 
PointSampleList.PointSampleListCursor - Class in net.imglib2
 
PointSampleListCursor() - Constructor for class net.imglib2.PointSampleList.PointSampleListCursor
 
PolarToCartesianTransform2D - Class in net.imglib2.realtransform
Transforms 2D polar to cartesian coordinates.
PolarToCartesianTransform2D() - Constructor for class net.imglib2.realtransform.PolarToCartesianTransform2D
 
poles - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
poles(int) - Static method in class net.imglib2.algorithm.bspline.BSplineDecomposition
Returns the poles for the filter for a spline of a given order.
polesCi(double[]) - Static method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
polTerms - Variable in class net.imglib2.realtransform.PolynomialTransform2D
register to hold all polynomial terms during applyInPlace following the order specified at http://bishopw.loni.ucla.edu/AIR5/2Dnonlinear.html#polylist excluding 1 because we want to avoid repeated multiplication with 1
polygon2D(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolygon2D from a list of vertices, with unspecified boundaries.
polygon2D(double[], double[]) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolygon2D from a list of (x, y) coordinates, with unspecified boundaries.
Polygon2D - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines a real space 2D polygon.
PolygonRegionOfInterest - Class in net.imglib2.roi
Deprecated.
PolygonRegionOfInterest() - Constructor for class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
PolygonRegionOfInterest.Stripe - Class in net.imglib2.roi
Deprecated.
We decompose the polygon into stripes from yMin to yMin which have arrays of xTop and xBottom describing the polygon boundary between yMin and yMax.
polyline(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritablePolyline from a list of vertices.
Polyline - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines a polyline in n-d space.
PolynomialTransform2D - Class in net.imglib2.realtransform
A 2D polynomial transform of n-th order.
PolynomialTransform2D() - Constructor for class net.imglib2.realtransform.PolynomialTransform2D
 
Polyshape - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines a polygonal shape in n-d space.
pop(long[]) - Method in class net.imglib2.algorithm.labeling.AllConnectedComponents.PositionStack
Deprecated.
 
populateTerms(double, double) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
pos - Variable in class net.imglib2.KDTreeNode
coordinates of the node.
pos - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
pos - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
pos - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
position - Variable in class net.imglib2.AbstractLocalizable
The Localizable interface is implemented using the position stored here.
position - Variable in class net.imglib2.AbstractLocalizableInt
The Localizable interface is implemented using the position stored here.
position - Variable in class net.imglib2.AbstractRealLocalizable
The RealLocalizable interface is implemented using the position stored here.
position - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
Store current relative position with respect to the ellipse center.
position - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
Current relative position of the cursor, with respect to the ellipsoid center.
position - Variable in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
position - Variable in class net.imglib2.img.io.proxyaccess.AbstractAccessProxy
 
position - Variable in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
position - Variable in class net.imglib2.iterator.LocalizingIntervalIterator
 
position - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
 
position - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
 
position - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
position - Variable in class net.imglib2.view.HyperSlice
 
Positionable - Interface in net.imglib2
An element that can be positioned in n-dimensional discrete space.
positionable(RandomAccessibleInterval<B>) - Static method in class net.imglib2.roi.Regions
Make any RandomAccessibleInterval<BooleanType> into an PositionableIterableRegion.
PositionableInterval - Class in net.imglib2.roi.util
An interval that can be moved around.
PositionableInterval(Interval) - Constructor for class net.imglib2.roi.util.PositionableInterval
 
PositionableInterval(PositionableInterval) - Constructor for class net.imglib2.roi.util.PositionableInterval
Copy constructor.
PositionableIterableInterval<T> - Interface in net.imglib2.roi
An IterableInterval that can be moved around.
PositionableIterableRegion<T extends BooleanType<T>> - Interface in net.imglib2.roi
An IterableRegion that can be moved around.
PositionableLocalizable - Interface in net.imglib2.roi.util
Something that is Positionable and Localizable.
PositionableWrappedIterableInterval<T,S extends IterableInterval<T>> - Class in net.imglib2.roi.util
Makes a IterableInterval Positionable by wrapping its cursors with an offset.
PositionableWrappedIterableInterval(S) - Constructor for class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
PositionableWrappedIterableInterval(PositionableWrappedIterableInterval<T, S>) - Constructor for class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
PositionableWrappedIterableRegion<T extends BooleanType<T>> - Class in net.imglib2.roi.util
Makes a IterableRegion Positionable by wrapping its accessors with an offset.
PositionableWrappedIterableRegion(IterableRegion<T>) - Constructor for class net.imglib2.roi.util.PositionableWrappedIterableRegion
 
positionAccesses - Variable in class net.imglib2.realtransform.PositionFieldTransform
 
positionAsDoubleArray() - Method in interface net.imglib2.RealLocalizable
Allocate and return a double array with the position.
positionAsLongArray() - Method in interface net.imglib2.Localizable
Allocate and return a long array containing the localizable's position.
positionAsPoint() - Method in interface net.imglib2.Localizable
Allocate and return a Point containing the localizable's position.
positionAsRealPoint() - Method in interface net.imglib2.RealLocalizable
Allocate and return a RealPoint with the current position.
PositionFieldTransform<T extends RealType<T>> - Class in net.imglib2.realtransform
A RealTransform by continuous coordinate lookup.
PositionFieldTransform(RealRandomAccess<T>...) - Constructor for class net.imglib2.realtransform.PositionFieldTransform
 
PositionFieldTransform(RealRandomAccessible<T>...) - Constructor for class net.imglib2.realtransform.PositionFieldTransform
 
PositionFieldTransform(RandomAccessibleInterval<T>...) - Constructor for class net.imglib2.realtransform.PositionFieldTransform
 
PositionFieldTransform(OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, InterpolatorFactory<T, RandomAccessible<T>>, RandomAccessibleInterval<T>...) - Constructor for class net.imglib2.realtransform.PositionFieldTransform
 
PositionRandomAccess() - Constructor for class net.imglib2.position.PositionRandomAccessible.PositionRandomAccess
 
PositionRandomAccess() - Constructor for class net.imglib2.realtransform.PositionRandomAccessible.PositionRandomAccess
 
PositionRandomAccessible - Class in net.imglib2.position
A RandomAccessible over the d-th position of discrete coordinate space.
PositionRandomAccessible(int, int) - Constructor for class net.imglib2.position.PositionRandomAccessible
 
PositionRandomAccessible - Class in net.imglib2.realtransform
A RandomAccessible over the d-th position of discrete coordinate space.
PositionRandomAccessible(int, int) - Constructor for class net.imglib2.realtransform.PositionRandomAccessible
 
PositionRandomAccessible.PositionRandomAccess - Class in net.imglib2.position
 
PositionRandomAccessible.PositionRandomAccess - Class in net.imglib2.realtransform
 
positions(Interval) - Static method in class net.imglib2.util.Intervals
Returns an image, where each pixel value is the position of the pixel represented as Localizable.
PositionStack(int) - Constructor for class net.imglib2.algorithm.labeling.AllConnectedComponents.PositionStack
Deprecated.
 
positionToIndex(int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionToIndex(long[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionToIndex(long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionToIndex(Localizable, Dimensions) - Static method in class net.imglib2.util.IntervalIndexer
 
positionToIndexForInterval(Localizable, Interval) - Static method in class net.imglib2.util.IntervalIndexer
 
positionWithOffsetToIndex(long[], long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionWithOffsetToIndex(long[], int[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
 
positionWithOffsetToIndex(int[], int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
 
pow(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Pow - Class in net.imglib2.algorithm.math
 
Pow(Object, Object) - Constructor for class net.imglib2.algorithm.math.Pow
 
pow(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
pow(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
pow(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
pow(double) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
pow(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
pow(double) - Method in class net.imglib2.type.numeric.ARGBType
 
pow(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
pow(double) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
pow(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
pow(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
pow(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
pow(double) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
pow(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
pow(double) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
pow(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
pow(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
pow(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
pow(double) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
Pow<T> - Interface in net.imglib2.type.operators
 
pow(T) - Method in interface net.imglib2.type.operators.Pow
 
pow(double) - Method in interface net.imglib2.type.operators.PowFloatingPoint
 
pow(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
pow(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
pow(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
pow(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
pow(int, int) - Static method in class net.imglib2.util.Util
 
pow(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
pow(double) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
Power<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Power(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Power
 
power(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
PowFloatingPoint - Interface in net.imglib2.type.operators
 
powIntPositive(double, int) - Static method in class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
preComputeWeights(int, int[], float) - Static method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
PreConcatenable<A> - Interface in net.imglib2.concatenate
If T implements PreConcatenable that means you can pre-concatenate it with an A, usually resulting in another T.
preConcatenate(A) - Method in interface net.imglib2.concatenate.PreConcatenable
Pre-concatenate this object with a.
preConcatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform
 
preConcatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform2D
 
preConcatenate(AffineTransform2D) - Method in class net.imglib2.realtransform.AffineTransform2D
 
preConcatenate(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
preConcatenate(AffineTransform3D.AffineMatrix3D) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
preConcatenate(double...) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
preConcatenate(AffineTransform3D) - Method in class net.imglib2.realtransform.AffineTransform3D
 
preConcatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform3D
 
preConcatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale
 
preConcatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale2D
 
preConcatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale3D
 
preConcatenate(ScaleAndTranslationGet) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
preConcatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation
 
preConcatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation2D
 
preConcatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation3D
 
preConcatenate(ComponentMapping) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
preConcatenate(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
 
preConcatenate(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
 
preConcatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
preConcatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
 
predicate(Predicate<? super T>, Predicate<? super T>) - Method in class net.imglib2.roi.Operators.BinaryMaskOperator
 
predicate(Predicate<? super RealLocalizable>) - Method in class net.imglib2.roi.Operators.RealTransformMaskOperator
 
predicate(Predicate<? super T>) - Method in class net.imglib2.roi.Operators.UnaryMaskOperator
 
preferredSourceType(T) - Method in interface net.imglib2.algorithm.convolution.Convolution
What's the preferred type for the source image, when target should have the specified type?
preferredSourceType(RealType<?>) - Method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussConvolverRealType
 
preferredSourceType(NumericType<?>) - Method in class net.imglib2.algorithm.convolution.kernel.KernelConvolverFactory
 
preferredSourceType(T) - Method in class net.imglib2.algorithm.convolution.LineConvolution
 
preferredSourceType(T) - Method in interface net.imglib2.algorithm.convolution.LineConvolverFactory
 
preferredSourceType(T) - Method in class net.imglib2.algorithm.convolution.MultiDimensionConvolution
 
preFetch(RandomAccessible<T>, Interval, long[], ExecutorService) - Static method in interface net.imglib2.algorithm.lazy.Caches
Trigger pre-fetching of an Interval in a RandomAccessible by concurrent sampling of values at a sparse grid.
prependTransform(Transform) - Method in class net.imglib2.view.TransformBuilder
Prepend a transform to the TransformBuilder.transforms list.
prev - Variable in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
PrimitiveType - Enum in net.imglib2.type
Enumeration of Java primitive types which can back NativeTypes.
Print - Class in net.imglib2.algorithm.math
 
Print(String, Object) - Constructor for class net.imglib2.algorithm.math.Print
 
print(List<?>) - Static method in class net.imglib2.concatenate.ConcatenateUtils
 
printCoordinates(float[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(double[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(RealLocalizable) - Static method in class net.imglib2.util.Util
 
printCoordinates(int[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(long[]) - Static method in class net.imglib2.util.Util
 
printCoordinates(boolean[]) - Static method in class net.imglib2.util.Util
 
Printing<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Printing(String, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Printing
 
printInterval(Interval) - Static method in class net.imglib2.util.Util
 
printNeighborhood(Shape, int) - Static method in class net.imglib2.algorithm.morphology.MorphologyUtils
Returns a string representation of the specified flat structuring element (given as a Shape), cast over the dimensionality specified by an EuclideanSpace.
printTerms() - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
process() - Method in interface net.imglib2.algorithm.Algorithm
 
process(RandomAccessible<? extends T>, RandomAccessibleInterval<? extends T>, ExecutorService, int) - Method in class net.imglib2.algorithm.convolution.AbstractMultiThreadedConvolution
Deprecated.
 
process(RandomAccessible<? extends T>, RandomAccessibleInterval<? extends T>) - Method in class net.imglib2.algorithm.convolution.AbstractMultiThreadedConvolution
Deprecated.
 
process(RandomAccessible<? extends T>, RandomAccessibleInterval<? extends T>) - Method in interface net.imglib2.algorithm.convolution.Convolution
Fills the target image, with the convolution result.
process(RandomAccessible<? extends T>, RandomAccessibleInterval<? extends T>) - Method in class net.imglib2.algorithm.convolution.LineConvolution
 
process(RandomAccessible<? extends T>, RandomAccessibleInterval<? extends T>) - Method in class net.imglib2.algorithm.convolution.MultiDimensionConvolution
 
process() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
process() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
process() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
process() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
process() - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
process() - Method in class net.imglib2.algorithm.integral.IntegralImg
 
process() - Method in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
process() - Method in class net.imglib2.algorithm.labeling.Watershed
The seeded watershed uses a pre-existing labeling of the space where the labels act as seeds for the output watershed.
process(List<P>, RandomAccessible<T>, Interval) - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
Refine a set of peaks to subpixel coordinates.
process() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
process() - Method in class net.imglib2.algorithm.math.PickImagePeaks
 
process() - Method in class net.imglib2.algorithm.pde.CoherenceEnhancingDiffusionTensor2D
 
process() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
Execute one iteration of explicit scheme of the diffusion equation.
process() - Method in class net.imglib2.algorithm.pde.Gradient
 
process() - Method in class net.imglib2.algorithm.pde.IsotropicDiffusionTensor
 
process() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
 
process() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
 
process() - Method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Execute one step of the numerical integration scheme.
process() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
process() - Method in class net.imglib2.algorithm.stats.Histogram
 
process() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
processingTime - Variable in class net.imglib2.algorithm.BenchmarkAlgorithm
 
processingTime - Variable in class net.imglib2.algorithm.MultiThreadedBenchmarkAlgorithm
 
processLine(SamplingLineIterator<T>, double[]) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
Compute the current line.
processLine(SamplingLineIterator<DoubleType>, double[]) - Method in class net.imglib2.algorithm.gauss.GaussDouble
Deprecated.
Compute the current line.
processLine(SamplingLineIterator<FloatType>, double[]) - Method in class net.imglib2.algorithm.gauss.GaussFloat
Deprecated.
Compute the current line.
processLine(SamplingLineIterator<T>, double[]) - Method in class net.imglib2.algorithm.gauss.GaussNativeType
Deprecated.
Compute the current line.
products - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
ProjectedSampler<T> - Interface in net.imglib2.display.projector.sampler
provides samples from a projected (SamplingProjector2D) dimension.
Projector - Interface in net.imglib2.display.projector
 
ptmp - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence
 
push(long[]) - Method in class net.imglib2.algorithm.labeling.AllConnectedComponents.PositionStack
Deprecated.
 
put(E, int, boolean) - Method in class net.imglib2.cache.queue.BlockingFetchQueues
Add element to the queue of the specified priority.
put_unsafe(E, int, boolean) - Method in class net.imglib2.cache.queue.BlockingFetchQueues
Equivalent to BlockingFetchQueues.put(Object, int, boolean), but priorities are not clamped to the allowed range.

Q

quadraticFitOffset(Localizable, RandomAccess<T>, Matrix, Matrix, RealPositionable) - Static method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
Estimate subpixel offset of extremum of quadratic function fitted at p.
quadTo(double, double, double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
quadTo(double, double, double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler
Deprecated.
 
quaternionApply(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
Apply quaternion rotation q to 3D point p, set qp = q * p.
quaternionFromAngleAxis(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute a quaternion from rotation axis and angle.
quaternionFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute a unit quaternion from a rotation matrix.
quaternionInvert(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
invert quaternion, set q = p^{-1}.
quaternionMultiply(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the quaternion product pq = p * q.
quaternionPower(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the power of a quaternion q raised to the exponent a.
quaternionToR(double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
compute a rotation matrix from a unit quaternion.
quicksort(long[]) - Static method in class net.imglib2.util.Util
 
quicksort(long[], int, int) - Static method in class net.imglib2.util.Util
 
quicksort(double[]) - Static method in class net.imglib2.util.Util
 
quicksort(double[], int, int) - Static method in class net.imglib2.util.Util
 
quicksort(float[]) - Static method in class net.imglib2.util.Util
 
quicksort(float[], int, int) - Static method in class net.imglib2.util.Util
 
quicksort(double[], int[], int, int) - Static method in class net.imglib2.util.Util
 

R

r - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
ra - Variable in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
ra - Variable in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
ra - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
ra - Variable in class net.imglib2.img.io.proxyaccess.AbstractAccessProxy
 
radius - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
radius - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
radius - Variable in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
radius - Variable in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
radius - Variable in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
radius - Variable in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
radius() - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
radius() - Method in interface net.imglib2.roi.geom.real.Sphere
Returns the radius of this sphere.
RadiusNeighborSearch<T> - Interface in net.imglib2.neighborsearch
Radius neighbor search in an Euclidean space.
RadiusNeighborSearchOnKDTree<T> - Class in net.imglib2.neighborsearch
Implementation of RadiusNeighborSearch search for kd-trees.
RadiusNeighborSearchOnKDTree(KDTree<T>) - Constructor for class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
randomAccess() - Method in class net.imglib2.algorithm.gradient.ScaleAsFunctionOfPosition
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.gradient.ScaleAsFunctionOfPosition
 
randomAccess() - Method in class net.imglib2.algorithm.kdtree.VolumetricSearch
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.kdtree.VolumetricSearch
 
randomAccess(Converter<RealType<?>, C>, C, O, Converter<C, O>) - Method in class net.imglib2.algorithm.math.Compute
 
randomAccess(C, O, Converter<C, O>) - Method in class net.imglib2.algorithm.math.Compute
 
randomAccess(O) - Method in class net.imglib2.algorithm.math.Compute
 
randomAccess() - Method in class net.imglib2.algorithm.math.Compute
Returns a RandomAccess with the same type as the first input image found.
randomAccess() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
randomAccess() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunctionDouble
 
randomAccess() - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.math.execution.KDTreeRadiusSource
 
randomAccess() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsAccessible
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsAccessible
 
randomAccess() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsAccessible
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsAccessible
 
randomAccess() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsAccessible
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsAccessible
 
randomAccess() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsAccessible
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsAccessible
 
randomAccess() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsAccessible
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsAccessible
 
randomAccess() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsAccessible
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsAccessible
 
randomAccess() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsAccessible
 
randomAccess(Interval) - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsAccessible
 
randomAccess - Variable in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
randomAccess - Variable in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
randomAccess() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
randomAccess(Interval) - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
randomAccess() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
randomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.read.BiConvertedRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.converter.read.BiConvertedRandomAccessible
 
randomAccess() - Method in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.converter.read.ConvertedRandomAccessible
 
randomAccess() - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
 
randomAccess() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
randomAccess(Interval) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
randomAccess() - Method in class net.imglib2.histogram.Histogram1d
 
randomAccess(Interval) - Method in class net.imglib2.histogram.Histogram1d
 
randomAccess() - Method in class net.imglib2.histogram.HistogramNd
 
randomAccess(Interval) - Method in class net.imglib2.histogram.HistogramNd
 
randomAccess(Interval) - Method in class net.imglib2.img.AbstractImg
 
randomAccess() - Method in class net.imglib2.img.array.ArrayImg
 
randomAccess(Interval) - Method in class net.imglib2.img.array.ArrayImg
 
randomAccess() - Method in class net.imglib2.img.cell.AbstractCellImg
 
randomAccess() - Method in class net.imglib2.img.list.AbstractListImg
 
randomAccess() - Method in class net.imglib2.img.list.AbstractLongListImg
 
randomAccess() - Method in class net.imglib2.img.planar.PlanarImg
 
randomAccess() - Method in class net.imglib2.img.sparse.NtreeImg
 
randomAccess() - Method in class net.imglib2.img.unsafe.UnsafeImg
 
randomAccess(Interval) - Method in class net.imglib2.img.unsafe.UnsafeImg
 
randomAccess() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
randomAccess(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
randomAccess() - Method in class net.imglib2.position.FunctionRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.position.FunctionRandomAccessible
 
randomAccess() - Method in class net.imglib2.position.PositionRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.position.PositionRandomAccessible
 
RandomAccess<T> - Interface in net.imglib2
 
randomAccess() - Method in interface net.imglib2.RandomAccessible
Create a random access sampler for integer coordinates.
randomAccess(Interval) - Method in interface net.imglib2.RandomAccessible
Create a random access sampler for integer coordinates.
randomAccess() - Method in class net.imglib2.realtransform.AffineRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.realtransform.AffineRandomAccessible
To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.
randomAccess() - Method in class net.imglib2.realtransform.PositionRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.realtransform.PositionRandomAccessible
 
randomAccess() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.realtransform.RealTransformRandomAccessible
To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.
randomAccess() - Method in class net.imglib2.roi.boundary.Boundary
 
randomAccess(Interval) - Method in class net.imglib2.roi.boundary.Boundary
 
randomAccess() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
randomAccess(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
 
randomAccess() - Method in class net.imglib2.roi.labeling.LabelRegion
 
randomAccess(Interval) - Method in class net.imglib2.roi.labeling.LabelRegion
 
randomAccess() - Method in class net.imglib2.roi.mask.integer.MaskAsRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.roi.mask.integer.MaskAsRandomAccessible
 
randomAccess() - Method in class net.imglib2.roi.mask.integer.MaskIntervalAsRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.roi.mask.integer.MaskIntervalAsRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
randomAccess(Interval) - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
randomAccess() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
randomAccess(Interval) - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
randomAccess() - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
 
randomAccess(Interval) - Method in class net.imglib2.roi.util.PositionableWrappedIterableRegion
 
randomAccess() - Method in class net.imglib2.view.composite.CompositeView
 
randomAccess(Interval) - Method in class net.imglib2.view.composite.CompositeView
 
randomAccess() - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
randomAccess() - Method in class net.imglib2.view.HyperSlice
 
randomAccess(Interval) - Method in class net.imglib2.view.HyperSlice
 
randomAccess() - Method in class net.imglib2.view.HyperSlicesView
 
randomAccess(Interval) - Method in class net.imglib2.view.HyperSlicesView
 
randomAccess(Interval) - Method in class net.imglib2.view.IntervalView
 
randomAccess() - Method in class net.imglib2.view.IntervalView
 
randomAccess() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
randomAccess(Interval) - Method in class net.imglib2.view.MixedTransformView
 
randomAccess() - Method in class net.imglib2.view.MixedTransformView
 
randomAccess() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
randomAccess(Interval) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
randomAccess() - Method in class net.imglib2.view.RandomAccessiblePair
 
randomAccess(Interval) - Method in class net.imglib2.view.RandomAccessiblePair
 
RandomAccess() - Constructor for class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
randomAccess() - Method in class net.imglib2.view.StackView
 
randomAccess(Interval) - Method in class net.imglib2.view.StackView
 
randomAccess() - Method in class net.imglib2.view.SubsampleView
 
randomAccess(Interval) - Method in class net.imglib2.view.SubsampleView
 
randomAccess(Interval) - Method in class net.imglib2.view.TransformView
 
randomAccess() - Method in class net.imglib2.view.TransformView
 
randomAccessDouble(O, Converter<RealType<?>, O>) - Method in class net.imglib2.algorithm.math.Compute
 
randomAccessDouble(O) - Method in class net.imglib2.algorithm.math.Compute
 
randomAccessDouble() - Method in class net.imglib2.algorithm.math.Compute
Returns a RandomAccess with the same type as the first input image found.
RandomAccessible<T> - Interface in net.imglib2
f:Zn→T
randomAccessible(int) - Static method in class net.imglib2.util.Localizables
 
RandomAccessibleAsMask<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.integer
Wraps a RandomAccessible as a Mask.
RandomAccessibleAsMask(RandomAccessible<B>) - Constructor for class net.imglib2.roi.mask.integer.RandomAccessibleAsMask
The given RandomAccessible is expected to be defined everywhere.
RandomAccessibleCacheLoader<T extends NativeType<T>,A extends ArrayDataAccess<A>,CA extends ArrayDataAccess<CA>> - Class in net.imglib2.cache.img
A CacheLoader that produces cells from a given source RandomAccessible.
RandomAccessibleCacheLoader(CellGrid, RandomAccessible<T>, T, A, Function<A, CA>) - Constructor for class net.imglib2.cache.img.RandomAccessibleCacheLoader
 
RandomAccessibleInterval<T> - Interface in net.imglib2
f:{x∈Zn|[min,max]→T}
randomAccessibleInterval(Interval) - Static method in class net.imglib2.util.Localizables
 
RandomAccessibleIntervalAsMaskInterval<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.integer
RandomAccessibleIntervalAsMaskInterval(RandomAccessibleInterval<B>) - Constructor for class net.imglib2.roi.mask.integer.RandomAccessibleIntervalAsMaskInterval
 
RandomAccessibleIntervalCursor<T> - Class in net.imglib2.view
A Cursor that iterates any RandomAccessibleInterval by moving a RandomAccess in flat iteration order.
RandomAccessibleIntervalCursor(I) - Constructor for class net.imglib2.view.RandomAccessibleIntervalCursor
 
RandomAccessibleIntervalCursor(RandomAccessibleIntervalCursor<T>) - Constructor for class net.imglib2.view.RandomAccessibleIntervalCursor
 
RandomAccessibleLoader(RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.lazy.Caches.RandomAccessibleLoader
 
RandomAccessibleOffsetSource<I extends RealType<I>,O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
RandomAccessibleOffsetSource(O, Converter<RealType<?>, O>, RandomAccessible<I>, long[]) - Constructor for class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
RandomAccessibleOffsetSourceDirect<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
RandomAccessibleOffsetSourceDirect(O, RandomAccessible<O>, long[]) - Constructor for class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSourceDirect
 
RandomAccessibleOnRealRandomAccessible<T> - Class in net.imglib2.view
RandomAccessibleOnRealRandomAccessible(RealRandomAccessible<T>) - Constructor for class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible - Class in net.imglib2.view
 
RandomAccessiblePair<A,B> - Class in net.imglib2.view
A RandomAccessible over two independent RandomAccessibles whose type is the Pair of corresponding values at the same coordinates in either of the two sources.
RandomAccessiblePair(RandomAccessible<A>, RandomAccessible<B>) - Constructor for class net.imglib2.view.RandomAccessiblePair
 
RandomAccessiblePair.RandomAccess - Class in net.imglib2.view
 
RandomAccessibleProjector2D<A,B> - Class in net.imglib2.display.projector
A general 2D Projector that uses two dimensions as input to create the 2D result.
RandomAccessibleProjector2D(int, int, RandomAccessible<A>, RandomAccessibleInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.RandomAccessibleProjector2D
creates a new 2D projector that samples a plain in the dimensions dimX, dimY.
RandomAccessibleRegionCursor<T extends BooleanType<T>> - Class in net.imglib2.roi.util
Deprecated.
RandomAccessibleRegionCursor(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
RandomAccessibleRegionCursor(RandomAccessibleRegionCursor<T>) - Constructor for class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
RandomAccessibleSource<I extends RealType<I>> - Class in net.imglib2.algorithm.math
 
RandomAccessibleSource(RandomAccessible<I>) - Constructor for class net.imglib2.algorithm.math.RandomAccessibleSource
 
RandomAccessibleSource(RandomAccessible<I>, long[]) - Constructor for class net.imglib2.algorithm.math.RandomAccessibleSource
 
randomAccessOnCells - Variable in class net.imglib2.img.cell.CellRandomAccess
 
RandomAccessOnly<I> - Interface in net.imglib2.algorithm.math.abstractions
 
RandomAccessOnRealRandomAccessible(RealRandomAccess<T>) - Constructor for class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
RandomImgs - Class in net.imglib2.test
 
randomize(I) - Method in class net.imglib2.test.RandomImgs
Randomizes the content of the given image.
range - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
raster(RealRandomAccessible<T>) - Static method in class net.imglib2.view.Views
Turns a RealRandomAccessible into a RandomAccessible, providing RandomAccess at integer coordinates.
ReadOnlyCachedCellImgFactory - Class in net.imglib2.cache.img
Factory for creating read-only CachedCellImgs that are backed by either a CellLoader or a CacheLoader.
ReadOnlyCachedCellImgFactory() - Constructor for class net.imglib2.cache.img.ReadOnlyCachedCellImgFactory
Create a new ReadOnlyCachedCellImgFactory with default configuration.
ReadOnlyCachedCellImgFactory(ReadOnlyCachedCellImgOptions) - Constructor for class net.imglib2.cache.img.ReadOnlyCachedCellImgFactory
Create a new ReadOnlyCachedCellImgFactory with the specified configuration.
ReadOnlyCachedCellImgOptions - Class in net.imglib2.cache.img
Optional parameters for constructing a ReadOnlyCachedCellImgFactory.
ReadOnlyCachedCellImgOptions() - Constructor for class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions
 
ReadOnlyCachedCellImgOptions.Values - Class in net.imglib2.cache.img
 
Real1dBinMapper<T extends RealType<T>> - Class in net.imglib2.histogram
Maps real values into a 1-d set of bins.
Real1dBinMapper(double, double, long, boolean) - Constructor for class net.imglib2.histogram.Real1dBinMapper
Specify a mapping of real data from a user defined range into a specified number of bins.
RealARGBConverter<R extends RealType<?>> - Class in net.imglib2.converter
 
RealARGBConverter() - Constructor for class net.imglib2.converter.RealARGBConverter
 
RealARGBConverter(double, double) - Constructor for class net.imglib2.converter.RealARGBConverter
 
RealBinMapper<T extends RealType<T>> - Class in net.imglib2.algorithm.stats
A HistogramBinMapper over RealType, using arbitrary-width histogram bins.
RealBinMapper(T, T, int) - Constructor for class net.imglib2.algorithm.stats.RealBinMapper
Creates a RealBinMapper for a histogram with the given minimum bin center, maximum bin center, and number of bins.
RealBounds(RealInterval) - Constructor for class net.imglib2.roi.Bounds.RealBounds
 
RealComposite<T extends RealType<T>> - Class in net.imglib2.view.composite
A vector of RealType scalars.
RealComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.RealComposite
 
RealComposite.Factory<T extends RealType<T>> - Class in net.imglib2.view.composite
 
RealCompositeMatrix<T extends RealType<T>> - Class in net.imglib2.algorithm.linalg.matrix
 
RealCompositeMatrix(Composite<T>, int, int) - Constructor for class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
RealCompositeMatrix(Composite<T>, int, int, int) - Constructor for class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
RealCompositeSquareMatrix<T extends RealType<T>> - Class in net.imglib2.algorithm.linalg.matrix
 
RealCompositeSquareMatrix(Composite<T>, int) - Constructor for class net.imglib2.algorithm.linalg.matrix.RealCompositeSquareMatrix
 
RealCompositeSquareMatrix(Composite<T>, int, int) - Constructor for class net.imglib2.algorithm.linalg.matrix.RealCompositeSquareMatrix
 
RealCompositeSymmetricMatrix<T extends RealType<T>> - Class in net.imglib2.algorithm.linalg.matrix
 
RealCompositeSymmetricMatrix(Composite<T>, int) - Constructor for class net.imglib2.algorithm.linalg.matrix.RealCompositeSymmetricMatrix
 
RealCompositeSymmetricMatrix(Composite<T>, int, int) - Constructor for class net.imglib2.algorithm.linalg.matrix.RealCompositeSymmetricMatrix
 
RealCursor<T> - Interface in net.imglib2
A RealCursor iterates over a set of RealLocalizable elements, for example intensity values sampled at a finite set of arbitrary real positions.
RealDoubleConverter<R extends RealType<R>> - Class in net.imglib2.converter
Converts any RealType to a DoubleType.
RealDoubleConverter() - Constructor for class net.imglib2.converter.RealDoubleConverter
 
RealDoubleSamplerConverter<R extends RealType<R>> - Class in net.imglib2.converter.readwrite
TODO
RealDoubleSamplerConverter() - Constructor for class net.imglib2.converter.readwrite.RealDoubleSamplerConverter
 
RealFloatConverter<R extends RealType<R>> - Class in net.imglib2.converter
 
RealFloatConverter() - Constructor for class net.imglib2.converter.RealFloatConverter
 
RealFloatSamplerConverter<R extends RealType<R>> - Class in net.imglib2.converter.readwrite
TODO
RealFloatSamplerConverter() - Constructor for class net.imglib2.converter.readwrite.RealFloatSamplerConverter
 
RealFunctionRealRandomAccess() - Constructor for class net.imglib2.position.FunctionRealRandomAccessible.RealFunctionRealRandomAccess
 
RealInterval - Interface in net.imglib2
{x∈Rn|mindxdmaxd;d∈{0… n-1}}
RealLocalizable - Interface in net.imglib2
The RealLocalizable interface can localize itself in an n-dimensional real space.
RealLocalizableRealPositionable - Interface in net.imglib2.roi.util
An element which can be localized and positioned in n-dimensional real space.
RealLocalizableRealPositionableWrapper<T extends RealLocalizable & RealPositionable> - Class in net.imglib2.roi.util
RealLocalizableRealPositionableWrapper(T) - Constructor for class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
RealLUTConverter<R extends RealType<R>> - Class in net.imglib2.converter
RealLUTConverter contains a ColorTable8, through which samples are filtered.
RealLUTConverter() - Constructor for class net.imglib2.converter.RealLUTConverter
 
RealLUTConverter(double, double, ColorTable) - Constructor for class net.imglib2.converter.RealLUTConverter
 
RealMask - Interface in net.imglib2.roi
RealMaskAsRealRandomAccessible<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.real
This class takes a RealMask and wraps it as a RealRandomAccessible.
RealMaskAsRealRandomAccessible(RealMask, B) - Constructor for class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
 
RealMaskRealInterval - Interface in net.imglib2.roi
A bounded RealMask, that is, the mask predicate evaluates to false outside the bounds interval.
RealMaskRealIntervalAsRealRandomAccessibleRealInterval<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.real
RealMaskRealIntervalAsRealRandomAccessibleRealInterval(RealMaskRealInterval, B) - Constructor for class net.imglib2.roi.mask.real.RealMaskRealIntervalAsRealRandomAccessibleRealInterval
 
realMax(int) - Method in class net.imglib2.AbstractInterval
 
realMax(double[]) - Method in class net.imglib2.AbstractInterval
 
realMax(RealPositionable) - Method in class net.imglib2.AbstractInterval
 
realMax(int) - Method in class net.imglib2.AbstractRealInterval
 
realMax(double[]) - Method in class net.imglib2.AbstractRealInterval
 
realMax(RealPositionable) - Method in class net.imglib2.AbstractRealInterval
 
realMax(int) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMax(double[]) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMax(RealPositionable) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMax(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
realMax(double[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
realMax(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
realMax(double[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
realMax(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
realMax(double[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
realMax(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
realMax(double[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
realMax(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
realMax(double[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
realMax(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
realMax(double[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
realMax(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
realMax(double[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
realMax(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
realMax(double[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
realMax(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
realMax(double[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
realMax(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
realMax(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
realMax(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
realMax(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
realMax(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
realMax(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
realMax(RealPositionable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
realMax(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMax(double[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMax(RealPositionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMax() - Method in class net.imglib2.histogram.Histogram1d
 
realMax(int) - Method in class net.imglib2.histogram.Histogram1d
 
realMax(double[]) - Method in class net.imglib2.histogram.Histogram1d
 
realMax(RealPositionable) - Method in class net.imglib2.histogram.Histogram1d
 
realMax(int) - Method in class net.imglib2.histogram.HistogramNd
 
realMax(double[]) - Method in class net.imglib2.histogram.HistogramNd
 
realMax(RealPositionable) - Method in class net.imglib2.histogram.HistogramNd
 
realMax(int) - Method in class net.imglib2.img.AbstractImg
 
realMax(double[]) - Method in class net.imglib2.img.AbstractImg
 
realMax(RealPositionable) - Method in class net.imglib2.img.AbstractImg
 
realMax(int) - Method in interface net.imglib2.Interval
Default implementation of RealInterval.realMax(int).
realMax(int) - Method in class net.imglib2.KDTree
 
realMax(double[]) - Method in class net.imglib2.KDTree
 
realMax(RealPositionable) - Method in class net.imglib2.KDTree
 
realMax(int) - Method in interface net.imglib2.RealInterval
Get the maximum in dimension d.
realMax(double[]) - Method in interface net.imglib2.RealInterval
Write the maximum of each dimension into double[].
realMax(RealPositionable) - Method in interface net.imglib2.RealInterval
Sets a RealPositionable to the maximum of this Interval
realMax(int) - Method in class net.imglib2.RealPointSampleList
 
realMax(double[]) - Method in class net.imglib2.RealPointSampleList
 
realMax(RealPositionable) - Method in class net.imglib2.RealPointSampleList
 
realMax(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
realMax(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
realMax(RealPositionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
realMax(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
realMax(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
realMax(RealPositionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
realMax(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
realMax(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
realMax(RealPositionable) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
realMax(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
realMax(double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
realMax(RealPositionable) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
realMax(int) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
realMax(double[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
realMax(RealPositionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
realMax(double[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
 
realMax(RealPositionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
 
realMax(int) - Method in class net.imglib2.roi.Bounds.IntersectionRealInterval
 
realMax(int) - Method in class net.imglib2.roi.Bounds.RealTransformRealInterval
 
realMax(int) - Method in class net.imglib2.roi.Bounds.UnionRealInterval
 
realMax(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
realMax(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
realMax(int) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
realMax(double[]) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
realMax(RealPositionable) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
realMax(int) - Method in interface net.imglib2.roi.geom.real.PointMask
 
realMax(int) - Method in class net.imglib2.roi.labeling.LabelRegion
 
realMax(double[]) - Method in class net.imglib2.roi.labeling.LabelRegion
 
realMax(RealPositionable) - Method in class net.imglib2.roi.labeling.LabelRegion
 
realMax(double[]) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
realMax(RealPositionable) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
realMax(int) - Method in class net.imglib2.roi.util.PositionableInterval
 
realMax(double[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
realMax(RealPositionable) - Method in class net.imglib2.roi.util.PositionableInterval
 
realMax(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMax(double[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMax(RealPositionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMax(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMax(double[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMax(RealPositionable) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMin(int) - Method in class net.imglib2.AbstractInterval
 
realMin(double[]) - Method in class net.imglib2.AbstractInterval
 
realMin(RealPositionable) - Method in class net.imglib2.AbstractInterval
 
realMin(int) - Method in class net.imglib2.AbstractRealInterval
 
realMin(double[]) - Method in class net.imglib2.AbstractRealInterval
 
realMin(RealPositionable) - Method in class net.imglib2.AbstractRealInterval
 
realMin(int) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMin(double[]) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMin(RealPositionable) - Method in class net.imglib2.AbstractWrappedRealInterval
 
realMin(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
realMin(double[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
realMin(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
realMin(double[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
realMin(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
realMin(double[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
realMin(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
realMin(double[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
realMin(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
realMin(double[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
realMin(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
realMin(double[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
realMin(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
realMin(double[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
realMin(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
realMin(double[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
realMin(int) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
realMin(double[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
realMin(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
realMin(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
realMin(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
realMin(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
realMin(int) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
realMin(double[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
realMin(RealPositionable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
realMin(int) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMin(double[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMin(RealPositionable) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
realMin() - Method in class net.imglib2.histogram.Histogram1d
 
realMin(int) - Method in class net.imglib2.histogram.Histogram1d
 
realMin(double[]) - Method in class net.imglib2.histogram.Histogram1d
 
realMin(RealPositionable) - Method in class net.imglib2.histogram.Histogram1d
 
realMin(int) - Method in class net.imglib2.histogram.HistogramNd
 
realMin(double[]) - Method in class net.imglib2.histogram.HistogramNd
 
realMin(RealPositionable) - Method in class net.imglib2.histogram.HistogramNd
 
realMin(int) - Method in class net.imglib2.img.AbstractImg
 
realMin(double[]) - Method in class net.imglib2.img.AbstractImg
 
realMin(RealPositionable) - Method in class net.imglib2.img.AbstractImg
 
realMin(int) - Method in interface net.imglib2.Interval
Default implementation of RealInterval.realMin(int).
realMin(int) - Method in class net.imglib2.KDTree
 
realMin(double[]) - Method in class net.imglib2.KDTree
 
realMin(RealPositionable) - Method in class net.imglib2.KDTree
 
realMin(int) - Method in interface net.imglib2.RealInterval
Get the minimum in dimension d.
realMin(double[]) - Method in interface net.imglib2.RealInterval
Write the minimum of each dimension into double[].
realMin(RealPositionable) - Method in interface net.imglib2.RealInterval
Sets a RealPositionable to the minimum of this Interval
realMin(int) - Method in class net.imglib2.RealPointSampleList
 
realMin(double[]) - Method in class net.imglib2.RealPointSampleList
 
realMin(RealPositionable) - Method in class net.imglib2.RealPointSampleList
 
realMin(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
realMin(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
realMin(RealPositionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
realMin(int) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
realMin(double[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
realMin(RealPositionable) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
realMin(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
realMin(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
realMin(RealPositionable) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
realMin(int) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
realMin(double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
realMin(RealPositionable) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
realMin(int) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
realMin(double[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
realMin(RealPositionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingInterval
 
realMin(double[]) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
 
realMin(RealPositionable) - Method in class net.imglib2.roi.Bounds.AbstractAdaptingRealInterval
 
realMin(int) - Method in class net.imglib2.roi.Bounds.IntersectionRealInterval
 
realMin(int) - Method in class net.imglib2.roi.Bounds.RealTransformRealInterval
 
realMin(int) - Method in class net.imglib2.roi.Bounds.UnionRealInterval
 
realMin(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
realMin(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
realMin(int) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
realMin(double[]) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
realMin(RealPositionable) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
realMin(int) - Method in interface net.imglib2.roi.geom.real.PointMask
 
realMin(int) - Method in class net.imglib2.roi.labeling.LabelRegion
 
realMin(double[]) - Method in class net.imglib2.roi.labeling.LabelRegion
 
realMin(RealPositionable) - Method in class net.imglib2.roi.labeling.LabelRegion
 
realMin(double[]) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
realMin(RealPositionable) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
realMin(int) - Method in class net.imglib2.roi.util.PositionableInterval
 
realMin(double[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
realMin(RealPositionable) - Method in class net.imglib2.roi.util.PositionableInterval
 
realMin(int) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMin(double[]) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMin(RealPositionable) - Method in class net.imglib2.view.composite.CompositeIntervalView
 
realMin(int) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMin(double[]) - Method in class net.imglib2.view.SubsampleIntervalView
 
realMin(RealPositionable) - Method in class net.imglib2.view.SubsampleIntervalView
 
RealOutOfBounds<T> - Interface in net.imglib2.outofbounds
 
RealOutOfBoundsFactory<T,F> - Interface in net.imglib2.outofbounds
 
RealOutOfBoundsRealRandomAccess<T> - Class in net.imglib2.outofbounds
 
RealOutOfBoundsRealRandomAccess(RealOutOfBoundsRealRandomAccess<T>) - Constructor for class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
RealOutOfBoundsRealRandomAccess(int, RealOutOfBounds<T>) - Constructor for class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
RealPoint - Class in net.imglib2
A point is a location in EuclideanSpace.
RealPoint(double[], boolean) - Constructor for class net.imglib2.RealPoint
Protected constructor that can re-use the passed position array.
RealPoint(int) - Constructor for class net.imglib2.RealPoint
Create a point in nDimensional space initialized to 0,0,...
RealPoint(double...) - Constructor for class net.imglib2.RealPoint
Create a point at a definite location in a space of the dimensionality of the position.
RealPoint(float...) - Constructor for class net.imglib2.RealPoint
Create a point at a definite location in a space of the dimensionality of the position.
RealPoint(RealLocalizable) - Constructor for class net.imglib2.RealPoint
Create a point using the position and dimensionality of a RealLocalizable
realPointCollection(HashMap<TDoubleArrayList, L>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritableRealPointCollection from a map of points.
realPointCollection(Collection<L>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a WritableRealPointCollection from a collection of points.
RealPointCollection<L extends RealLocalizable> - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines a collection of real space points in n-d space.
RealPointSampleList<T> - Class in net.imglib2
A list of data samples at explicit real coordinates.
RealPointSampleList(int) - Constructor for class net.imglib2.RealPointSampleList
 
RealPointSampleList.RealPointSampleListCursor - Class in net.imglib2
 
RealPointSampleListCursor() - Constructor for class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
realPointSampleListRealPointCollection(RealPointSampleList<L>) - Static method in class net.imglib2.roi.geom.GeomMasks
realPointSampleListRealPointCollection(Collection<L>) - Static method in class net.imglib2.roi.geom.GeomMasks
Creates a RealPointSampleList-based WritableRealPointCollection from a collection of points.
RealPointSampleListWritableRealPointCollection<L extends RealLocalizable> - Class in net.imglib2.roi.geom.real
A WritableRealPointCollection which checks if points are contained in the collection by performing a NearestNeighborSearch on the provided RealPointSampleList.
RealPointSampleListWritableRealPointCollection(Collection<L>) - Constructor for class net.imglib2.roi.geom.real.RealPointSampleListWritableRealPointCollection
Creates a RealPointCollection with the points in the Collection.
RealPointSampleListWritableRealPointCollection(RealPointSampleList<L>) - Constructor for class net.imglib2.roi.geom.real.RealPointSampleListWritableRealPointCollection
Creates a RealPointCollection with the points in the RealPointSampleList.
RealPositionable - Interface in net.imglib2
An element that can be positioned in n-dimensional real space.
RealPositionRealRandomAccess() - Constructor for class net.imglib2.position.RealPositionRealRandomAccessible.RealPositionRealRandomAccess
 
RealPositionRealRandomAccess() - Constructor for class net.imglib2.realtransform.RealPositionRealRandomAccessible.RealPositionRealRandomAccess
 
RealPositionRealRandomAccessible - Class in net.imglib2.position
A RealRandomAccessible over the d-th position of real coordinate space.
RealPositionRealRandomAccessible(int, int) - Constructor for class net.imglib2.position.RealPositionRealRandomAccessible
 
RealPositionRealRandomAccessible - Class in net.imglib2.realtransform
A RealRandomAccessible over the d-th position of real coordinate space.
RealPositionRealRandomAccessible(int, int) - Constructor for class net.imglib2.realtransform.RealPositionRealRandomAccessible
 
RealPositionRealRandomAccessible.RealPositionRealRandomAccess - Class in net.imglib2.position
 
RealPositionRealRandomAccessible.RealPositionRealRandomAccess - Class in net.imglib2.realtransform
 
realRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
realRandomAccess(RealInterval) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
realRandomAccess() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
realRandomAccess(RealInterval) - Method in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
realRandomAccess() - Method in class net.imglib2.interpolation.Interpolant
 
realRandomAccess(RealInterval) - Method in class net.imglib2.interpolation.Interpolant
 
realRandomAccess() - Method in class net.imglib2.position.FunctionRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.position.FunctionRealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.position.RealPositionRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.position.RealPositionRealRandomAccessible
 
RealRandomAccess<T> - Interface in net.imglib2
 
realRandomAccess() - Method in interface net.imglib2.RealRandomAccessible
Create a random access sampler for real coordinates.
realRandomAccess(RealInterval) - Method in interface net.imglib2.RealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible
To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.
realRandomAccess() - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.realtransform.RealPositionRealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible
To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.
realRandomAccess() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible
To be overridden for RealTransform that can estimate the boundaries of a transferred RealInterval.
realRandomAccess() - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
realRandomAccess(RealInterval) - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
TODO Check if constraining real random access to an interval could be exploited for a more efficient solution.
realRandomAccess() - Method in class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
 
realRandomAccess(RealInterval) - Method in class net.imglib2.roi.mask.real.RealMaskAsRealRandomAccessible
 
realRandomAccess() - Method in class net.imglib2.roi.mask.real.RealMaskRealIntervalAsRealRandomAccessibleRealInterval
 
realRandomAccess(RealInterval) - Method in class net.imglib2.roi.mask.real.RealMaskRealIntervalAsRealRandomAccessibleRealInterval
 
realRandomAccess() - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
realRandomAccess(RealInterval) - Method in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
RealRandomAccessible<T> - Interface in net.imglib2
f:Rn→T
RealRandomAccessibleAsRealMask<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.real
RealRandomAccessibleAsRealMask(RealRandomAccessible<B>) - Constructor for class net.imglib2.roi.mask.real.RealRandomAccessibleAsRealMask
The given RealRandomAccessible is expected to be defined everywhere.
RealRandomAccessibleRealInterval<T> - Interface in net.imglib2
f:{x∈Rn|[min,max]→T}
RealRandomAccessibleRealIntervalAsRealMaskRealInterval<B extends BooleanType<B>> - Class in net.imglib2.roi.mask.real
RealRandomAccessibleRealIntervalAsRealMaskRealInterval(RealRandomAccessibleRealInterval<B>) - Constructor for class net.imglib2.roi.mask.real.RealRandomAccessibleRealIntervalAsRealMaskRealInterval
 
RealSum - Class in net.imglib2.util
RealSum implements a method to reduce numerical instabilities when summing up a very large number of double precision numbers.
RealSum() - Constructor for class net.imglib2.util.RealSum
Create a new RealSum.
RealSum(int) - Constructor for class net.imglib2.util.RealSum
Create a new RealSum.
realSymetricMatrix2x2(double, double, double) - Static method in class net.imglib2.algorithm.pde.PdeUtil
Return the eigenvalues and the eigenvectors of a 2x2 real symetric matrix:
realToComplex(RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessibleInterval<R>, OutOfBoundsFactory<R, RandomAccessibleInterval<R>>, ImgFactory<ComplexFloatType>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessibleInterval<R>, OutOfBoundsFactory<R, RandomAccessibleInterval<R>>, ImgFactory<ComplexFloatType>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessibleInterval<R>, OutOfBoundsFactory<R, RandomAccessibleInterval<R>>, ImgFactory<ComplexFloatType>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessible<R>, Interval, ImgFactory<C>, C) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessible<R>, Interval, ImgFactory<C>, C, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessible<R>, Interval, ImgFactory<C>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
realToComplex(RandomAccessible<R>, Interval, ImgFactory<C>, C, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a real-to-complex forward FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, Interval, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a real-to-complex forward FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, int, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a real-to-complex forward FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, Interval, int, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a real-to-complex forward FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, int, boolean, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a real-to-complex forward FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, Interval, int, boolean, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a real-to-complex forward FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, int, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a real-to-complex forward FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
realToComplex(RandomAccessibleInterval<R>, RandomAccessibleInterval<C>, Interval, int, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a real-to-complex forward FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
RealTransform - Interface in net.imglib2.realtransform
Transformation from Rn to Rm.
RealTransformFiniteDerivatives - Class in net.imglib2.realtransform.inverse
Use finite differences to estimate the jacobian of an arbitrary RealTransform.
RealTransformFiniteDerivatives(RealTransform) - Constructor for class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
RealTransformMaskOperator(RealTransform) - Constructor for class net.imglib2.roi.Operators.RealTransformMaskOperator
 
RealTransformRandomAccess() - Constructor for class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
RealTransformRandomAccess(RealTransformRandomAccessible<T, R>.RealTransformRandomAccess) - Constructor for class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
RealTransformRandomAccessible<T,R extends RealTransform> - Class in net.imglib2.realtransform
A RandomAccessible whose samples are generated by rasterizing a RealRandomAccessible transformed by a RealTransform.
RealTransformRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.RealTransformRandomAccessible
 
RealTransformRandomAccessible.RealTransformRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.
RealTransformRealInterval(RealInterval, InvertibleRealTransform) - Constructor for class net.imglib2.roi.Bounds.RealTransformRealInterval
Creates Bounds for a transformed source interval.
RealTransformRealRandomAccess() - Constructor for class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
RealTransformRealRandomAccessible<T,R extends RealTransform> - Class in net.imglib2.realtransform
A RealRandomAccessible whose samples are generated from a RealRandomAccessible transformed by an RealTransform.
RealTransformRealRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.RealTransformRealRandomAccessible
 
RealTransformRealRandomAccessible.RealTransformRealRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.
RealTransformSequence - Class in net.imglib2.realtransform
A sequence of RealTransforms.
RealTransformSequence() - Constructor for class net.imglib2.realtransform.RealTransformSequence
 
RealTransformUnaryCompositeRealMask - Class in net.imglib2.roi.composite
A RealMask which is the result of a transform operation on a Predicate.
RealTransformUnaryCompositeRealMask(Operators.RealTransformMaskOperator, Predicate<? super RealLocalizable>, int, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
RealTransformUnaryCompositeRealMaskRealInterval - Class in net.imglib2.roi.composite
A RealMaskRealInterval which is the result of a transform operation on a RealMaskRealInterval.
RealTransformUnaryCompositeRealMaskRealInterval(Operators.RealTransformMaskOperator, Predicate<? super RealLocalizable>, RealInterval, BoundaryType, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
RealType<T extends RealType<T>> - Interface in net.imglib2.type.numeric
TODO
RealTypeConverters - Class in net.imglib2.converter
 
RealUnsignedByteConverter<R extends RealType<R>> - Class in net.imglib2.converter
 
RealUnsignedByteConverter() - Constructor for class net.imglib2.converter.RealUnsignedByteConverter
 
RealUnsignedByteConverter(double, double) - Constructor for class net.imglib2.converter.RealUnsignedByteConverter
 
RealUnsignedShortConverter<R extends RealType<R>> - Class in net.imglib2.converter
 
RealUnsignedShortConverter() - Constructor for class net.imglib2.converter.RealUnsignedShortConverter
 
RealUnsignedShortConverter(double, double) - Constructor for class net.imglib2.converter.RealUnsignedShortConverter
 
RealViews - Class in net.imglib2.realtransform
Convenience factory methods for RealRandomAccessibles transformed in real coordinate space by InvertibleRealTransforms.
RealViews() - Constructor for class net.imglib2.realtransform.RealViews
 
RealViewsSimplifyUtils - Class in net.imglib2.realtransform
 
RealViewsSimplifyUtils() - Constructor for class net.imglib2.realtransform.RealViewsSimplifyUtils
 
rearrangeFFTQuadrants(RandomAccessibleInterval<T>, boolean, int) - Static method in class net.imglib2.algorithm.fft.FFTFunctions
Deprecated.
 
reconstruct(K, D) - Method in interface net.imglib2.cache.CacheRemover
Construct a value from its key and valueData.
reconstruct(Long, A) - Method in class net.imglib2.cache.img.DiskCellCache
 
reconstruct(K, D) - Method in class net.imglib2.cache.IoSync
 
rectangle(int[], boolean) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a symmetric, centered, rectangular flat structuring element for morphological operations.
rectangle(int[]) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a symmetric, centered, rectangular flat structuring element for morphological operations.
RectangleCursor<T> - Class in net.imglib2.algorithm.region.localneighborhood
A Cursor that iterates over a RectangleNeighborhoodGPL.
RectangleCursor(AbstractNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
RectangleNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhoodCursor(RandomAccessibleInterval<T>, Interval, RectangleNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
RectangleNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhoodGPL<T> - Class in net.imglib2.algorithm.region.localneighborhood
A Positionable IterableInterval that serves as a local neighborhood, e.g.
RectangleNeighborhoodGPL(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
Instantiate a new rectangular neighborhood, on the given image, with the given factory to return out of bounds values.
RectangleNeighborhoodGPL(RandomAccessibleInterval<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
Instantiate a new rectangular neighborhood, on the given image, with the given factory to return out of bounds values.
RectangleNeighborhoodGPL(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
Instantiate a rectangular neighborhood, with a OutOfBoundsPeriodicFactory
RectangleNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhoodLocalizableSampler(RandomAccessible<T>, Interval, RectangleNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
RectangleNeighborhoodLocalizableSampler(RectangleNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
RectangleNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhoodRandomAccess(RandomAccessible<T>, Interval, RectangleNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
RectangleNeighborhoodRandomAccess(RandomAccessible<T>, Interval, RectangleNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
RectangleNeighborhoodSkipCenter<T> - Class in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhoodSkipCenter.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhoodSkipCenterUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
RectangleNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
RectangleRegionOfInterest - Class in net.imglib2.roi
Deprecated.
RectangleRegionOfInterest(double[], double[]) - Constructor for class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
RectangleShape - Class in net.imglib2.algorithm.neighborhood
A factory for Accessibles on rectangular neighboorhoods.
RectangleShape(int, boolean) - Constructor for class net.imglib2.algorithm.neighborhood.RectangleShape
 
RectangleShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
RectangleShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 
recursion1d(RandomAccess<T>, RandomAccess<S>, double, double, S, long, int) - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition
Compute a 1d forward-backward recursion to compute bspline coefficients.
recursion1dUnpadded(RandomAccess<T>, RandomAccess<S>, S, long, int, double, int, double[], double[]) - Static method in class net.imglib2.algorithm.bspline.BSplineDecomposition
Compute a 1d forward-backward recursion to compute bspline coefficients.
RED - Static variable in interface net.imglib2.display.ColorTable
 
red(int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
red(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
reduceDimensions(ImagePlus) - Static method in class net.imglib2.img.imageplus.ImagePlusImg
Compute the minimal required number of dimensions for a given ImagePlus, whereas width and height are always first.
reduceDimensions(long[]) - Static method in class net.imglib2.img.imageplus.ImagePlusImg
 
referenceDimension - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
referenceLocation - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
referenceLocation - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
RefinedPeak<P extends Localizable> - Class in net.imglib2.algorithm.localextrema
A RealPoint representing a sub-pixel-localized peak.
RefinedPeak(P, RealLocalizable, double, boolean) - Constructor for class net.imglib2.algorithm.localextrema.RefinedPeak
 
refinePeaks(List<P>, RandomAccessible<T>, Interval, boolean, int, boolean, float, boolean[], int) - Static method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
Refine a set of peaks to subpixel coordinates.
refinePeaks(List<P>, RandomAccessible<T>, Interval, boolean, int, boolean, float, boolean[]) - Static method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
Refine a set of peaks to subpixel coordinates.
RegionOfInterest - Interface in net.imglib2.roi
Deprecated.
Regions - Class in net.imglib2.roi
 
Regions() - Constructor for class net.imglib2.roi.Regions
 
RegularizedDifferentiableRealTransform - Class in net.imglib2.realtransform.inverse
Wraps and regularizes a DifferentiableRealTransform.
RegularizedDifferentiableRealTransform(DifferentiableRealTransform, double) - Constructor for class net.imglib2.realtransform.inverse.RegularizedDifferentiableRealTransform
 
regularizeJacobian() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
Changes jacobian (J) to be: ( 1-eps ) * J + ( eps ) * I note jacRegMatrix = eps * I
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in interface net.imglib2.algorithm.math.abstractions.IFunction
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.abstractions.PassThrough
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Add
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.AndLogical
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.BlockReadSource
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Div
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Equal
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Exp
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.GreaterThan
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.If
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.ImgSource
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.KDTreeSource
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.LessThan
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Let
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Log
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Max
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Min
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Minus
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Mul
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.NotEqual
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.NotLogical
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.NumberSource
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.OffsetSource
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.OrLogical
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Pow
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Print
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.RandomAccessibleSource
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Sub
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.Var
 
reInit(O, Map<String, LetBinding<O>>, Converter<RealType<?>, O>, Map<Variable<O>, OFunction<O>>) - Method in class net.imglib2.algorithm.math.XorLogical
 
relabel(RandomAccessibleInterval<B>, RandomAccessibleInterval<L>, UnionFind, ToLongBiFunction<Localizable, L>, LongUnaryOperator) - Static method in interface net.imglib2.algorithm.util.unionfind.UnionFind
Relabel all mask pixels into the representative id of their containing sets as defined by unionFind.
relabel(RandomAccessibleInterval<L>, ToLongBiFunction<Localizable, L>, LongUnaryOperator) - Method in interface net.imglib2.algorithm.util.unionfind.UnionFind
Relabel all pixels into the representative id of their containing sets as defined by unionFind.
relabel(RandomAccessibleInterval<L>) - Method in interface net.imglib2.algorithm.util.unionfind.UnionFind
Relabel all pixels into the representative id of their containing sets as defined by unionFind.
relativeFrequency(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns the relative frequency (0 <= f <= 1) associated with a given bin.
relativeFrequency(T, boolean) - Method in class net.imglib2.histogram.Histogram1d
Returns the relative frequency of values within a bin using a representative value.
relativeFrequency(long, boolean) - Method in class net.imglib2.histogram.Histogram1d
Returns the relative frequency of values within a bin.
relativeFrequency(List<T>, boolean) - Method in class net.imglib2.histogram.HistogramNd
Returns the relative frequency of values within a bin using a set of representative values.
relativeFrequency(long[], boolean) - Method in class net.imglib2.histogram.HistogramNd
Returns the relative frequency of values within a bin.
remapLabels(ImgLabeling<T, I>, Function<T, U>) - Static method in class net.imglib2.roi.labeling.Labelings
Create a new ImgLabeling from an input labeling, with the labels transformed according to the provided Function.
remapLabels(ImgLabeling<T, I>, Map<T, U>) - Static method in class net.imglib2.roi.labeling.Labelings
Create a new ImgLabeling from an input labeling, with the labels transformed according to the provided Map.
remove() - Method in class net.imglib2.AbstractCursor
 
remove() - Method in class net.imglib2.AbstractCursorInt
 
remove() - Method in class net.imglib2.AbstractLocalizingCursor
 
remove() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
remove() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList.PixelListIterator
 
Remove - Class in net.imglib2.algorithm.morphology.table2d
Removes pixels that are otherwise surrounded by others (4 connected).
Remove() - Constructor for class net.imglib2.algorithm.morphology.table2d.Remove
 
remove(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Remove
 
remove(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Remove
 
remove() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
remove() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
remove() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
remove() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
remove() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
remove() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
remove(String) - Static method in class net.imglib2.algorithm.util.Singleton
Remove and retrieve a named singleton instance.
remove() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
remove() - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
remove() - Method in class net.imglib2.converter.read.BiConvertedCursor
 
remove() - Method in class net.imglib2.converter.read.BiConvertedRealCursor
 
remove() - Method in class net.imglib2.img.sparse.NtreeCursor
 
remove() - Method in class net.imglib2.KDTree.KDTreeCursor
 
remove(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
remove(int) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
remove() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
remove() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
remove() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
remove(long[]) - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
Remove a pixel from a ROI if possible.
remove(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Remove the region from the composite
remove(Object) - Method in class net.imglib2.roi.labeling.LabelingType
 
remove() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
remove() - Method in class net.imglib2.view.iteration.SlicingCursor
remove() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
removeAll(Collection<?>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
removeAll(Collection<?>) - Method in class net.imglib2.roi.labeling.LabelingType
 
removePoint(L) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
Removes the given point from the set, if the point is found in the set.
removePoint(L) - Method in interface net.imglib2.roi.geom.real.WritableRealPointCollection
Optional operation.
RemoverCache<K,V,D> - Interface in net.imglib2.cache
 
RemoverCacheAsCacheAdapter<K,V,D> - Class in net.imglib2.cache.util
Wraps a RemoverCache<K,V> as a Cache<K,V>.
RemoverCacheAsCacheAdapter(RemoverCache<K, V, D>, CacheRemover<K, V, D>) - Constructor for class net.imglib2.cache.util.RemoverCacheAsCacheAdapter
 
RemoverCacheKeyAdapter<K,L,V,D,C extends RemoverCache<L,V,D>> - Class in net.imglib2.cache.util
 
RemoverCacheKeyAdapter(C, KeyBimap<K, L>) - Constructor for class net.imglib2.cache.util.RemoverCacheKeyAdapter
 
removeVertex(int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
 
removeVertex(int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
removeVertex(int) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape
Removes the vertex at the given index.
removeVertex(int) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Remove a vertex from the polygon
replaceInput(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
replaceKernel(RandomAccessibleInterval<S>) - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
requiredSourceInterval(Interval) - Method in interface net.imglib2.algorithm.convolution.Convolution
Returns the required size for source image, to calculate the given target interval.
requiredSourceInterval(Interval) - Method in class net.imglib2.algorithm.convolution.LineConvolution
 
requiredSourceInterval(Interval) - Method in class net.imglib2.algorithm.convolution.MultiDimensionConvolution
 
reset() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
reset(long[]) - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
reset() - Method in class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
 
reset() - Method in class net.imglib2.algorithm.math.execution.FunctionCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
reset() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
reset(Localizable, Localizable) - Method in class net.imglib2.algorithm.region.BresenhamLine
 
reset() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
reset() - Method in class net.imglib2.algorithm.region.CircleCursor
 
reset() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
reset() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
reset() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
reset() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
reset() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
reset() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
reset() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
reset() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
reset() - Method in class net.imglib2.algorithm.stats.Histogram
Resets the histogram array and the Cursor.
reset(long[]) - Method in class net.imglib2.cache.iotiming.IoTimeBudget
(Re-)initialize the IO time budget, that is, the time that can be spent in blocking IO.
reset() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
reset() - Method in class net.imglib2.converter.AbstractConvertedRealCursor
 
reset() - Method in class net.imglib2.converter.read.BiConvertedCursor
 
reset() - Method in class net.imglib2.converter.read.BiConvertedRealCursor
 
reset() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
reset() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
reset() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
reset() - Method in class net.imglib2.img.array.AbstractArrayLocalizingCursor
reset() - Method in class net.imglib2.img.cell.CellCursor
 
reset() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
reset() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
reset() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
reset() - Method in class net.imglib2.img.list.ListCursor
 
reset() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
reset() - Method in class net.imglib2.img.planar.PlanarCursor
 
reset() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
reset() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
reset() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
reset() - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
reset() - Method in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
reset() - Method in class net.imglib2.iterator.IntervalIterator
 
reset() - Method in class net.imglib2.iterator.LocalizingIntervalIterator
 
reset() - Method in class net.imglib2.iterator.LocalizingZeroMinIntervalIterator
 
reset() - Method in interface net.imglib2.Iterator
Reset the Iterator, that is put it to where it would be if newly created.
reset() - Method in class net.imglib2.KDTree.KDTreeCursor
 
reset() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
reset() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
reset() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
reset() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
reset() - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
reset() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeCursor
 
reset() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeIterator
 
reset() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListCursor
 
reset() - Method in class net.imglib2.roi.util.iterationcode.IterationCodeListIterator
 
reset() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
Deprecated.
 
reset() - Method in class net.imglib2.view.iteration.SlicingCursor
Reset the Iterator, that is put it to where it would be if newly created.
reset() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
resetCounters() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Resets all frequency counts to zero.
resetCounters() - Method in class net.imglib2.histogram.Histogram1d
Resets all data counts to 0.
resetCounters() - Method in class net.imglib2.histogram.HistogramNd
Resets all data counts to 0.
resetKernel() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
resultPoints - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
resume() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
 
retainAll(Collection<?>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
retainAll(Collection<?>) - Method in class net.imglib2.roi.labeling.LabelingType
 
returnInvalidPeaks - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
rgba(int, int, int, int) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
rgba(float, float, float, float) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
rgba(double, double, double, double) - Static method in class net.imglib2.type.numeric.ARGBLongAccessType
 
rgba(int, int, int, int) - Static method in class net.imglib2.type.numeric.ARGBType
 
rgba(float, float, float, float) - Static method in class net.imglib2.type.numeric.ARGBType
 
rgba(double, double, double, double) - Static method in class net.imglib2.type.numeric.ARGBType
 
ri - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
The current radius in each dimension we are at.
right - Variable in class net.imglib2.KDTreeNode
Right child of this node.
rnd - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
rnd - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
root() - Method in interface net.imglib2.algorithm.componenttree.ComponentTree
Get the root component.
root() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Get the root component.
root() - Method in interface net.imglib2.algorithm.tree.Tree
Get the root component.
root - Variable in class net.imglib2.KDTree
 
roots() - Method in interface net.imglib2.algorithm.componenttree.ComponentForest
Get the set of root nodes of this component forest.
roots() - Method in class net.imglib2.algorithm.componenttree.mser.MserTree
Get the set of roots of the MSER tree (respectively forest...).
roots() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Get the root component.
roots() - Method in interface net.imglib2.algorithm.tree.Forest
Get the set of root nodes of this component forest.
rotate(double) - Method in class net.imglib2.realtransform.AffineTransform2D
Rotate
rotate(int, double) - Method in class net.imglib2.realtransform.AffineTransform3D
Rotate
rotate(Interval, int, int) - Static method in class net.imglib2.util.Intervals
Create an interval that is rotated by 90 degrees.
rotate(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Create view that is rotated by 90 degrees.
rotate(RandomAccessibleInterval<T>, int, int) - Static method in class net.imglib2.view.Views
Create view that is rotated by 90 degrees.
rotate(int, int, int) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.rotate(RandomAccessible, int, int).
rotateX(double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
rotateY(double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
rotateZ(double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
Round<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to its round discrete coordinates: f = r < 0 ? (long)( r - 0.5 ) : (long)( r + 0.5 )
Round(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Round
 
Round(RealLocalizable, LocalizablePositionable) - Constructor for class net.imglib2.position.transform.Round
 
round(double) - Static method in class net.imglib2.position.transform.Round
 
round(float) - Static method in class net.imglib2.position.transform.Round
 
round(double[], long[]) - Static method in class net.imglib2.position.transform.Round
 
round(float[], long[]) - Static method in class net.imglib2.position.transform.Round
 
round(RealLocalizable, long[]) - Static method in class net.imglib2.position.transform.Round
 
round(float) - Static method in class net.imglib2.util.Util
 
round(double) - Static method in class net.imglib2.util.Util
 
roundPositive(double) - Static method in class net.imglib2.display.AbstractLinearRange
 
roundToInt(float) - Static method in class net.imglib2.util.Util
 
roundToInt(double) - Static method in class net.imglib2.util.Util
 
roundToLong(float) - Static method in class net.imglib2.util.Util
 
roundToLong(double) - Static method in class net.imglib2.util.Util
 
rowAndColumnToLinear(long, long) - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
rowAndColumnToLinear(long, long) - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeSymmetricMatrix
 
rows(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
 
rows(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
 
run() - Method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussConvolverRealType.MyConvolver
 
run() - Method in class net.imglib2.algorithm.convolution.kernel.ConvolverNativeType
 
run() - Method in class net.imglib2.algorithm.convolution.kernel.ConvolverNumericType
 
run() - Method in class net.imglib2.algorithm.convolution.kernel.DoubleConvolverRealType
 
run() - Method in class net.imglib2.algorithm.convolution.kernel.FloatConvolverRealType
 
run() - Method in class net.imglib2.algorithm.gauss3.ConvolverNativeType
Deprecated.
 
run() - Method in class net.imglib2.algorithm.gauss3.ConvolverNativeTypeBuffered
Deprecated.
 
run() - Method in class net.imglib2.algorithm.gauss3.ConvolverNumericType
Deprecated.
 
run() - Method in class net.imglib2.algorithm.gauss3.DoubleConvolverRealType
Deprecated.
 
run() - Method in class net.imglib2.algorithm.gauss3.DoubleConvolverRealTypeBuffered
Deprecated.
 
run() - Method in class net.imglib2.algorithm.gauss3.FloatConvolverRealType
Deprecated.
 
run() - Method in class net.imglib2.algorithm.gauss3.FloatConvolverRealTypeBuffered
Deprecated.
 
run() - Method in class net.imglib2.loops.LoopUtils.LineProcessor
 
runAll(List<Runnable>) - Method in class net.imglib2.parallel.DefaultTaskExecutor
 
runAll(List<Runnable>) - Method in interface net.imglib2.parallel.TaskExecutor
This method will execute the given list of tasks.
runMultiThreaded(Runnable) - Static method in class net.imglib2.parallel.Parallelization
To run an algorithm multi-threaded use:
runMultiThreaded(Callable<T>) - Static method in class net.imglib2.parallel.Parallelization
To run an algorithm multi-threaded use:
runSingleThreaded(Runnable) - Static method in class net.imglib2.parallel.Parallelization
To run an algorithm single-threaded use:
runSingleThreaded(Callable<T>) - Static method in class net.imglib2.parallel.Parallelization
To run an algorithm single-threaded use:
runWithExecutor(ExecutorService, Runnable) - Static method in class net.imglib2.parallel.Parallelization
Executes the given Runnable with the given ExecutorService, and waits for the execution to finish.
runWithExecutor(ExecutorService, Callable<R>) - Static method in class net.imglib2.parallel.Parallelization
Executes the given Callable with the given ExecutorService, waits for the execution to finish and returns the result.
runWithExecutor(TaskExecutor, Runnable) - Static method in class net.imglib2.parallel.Parallelization
Executes the given Runnable with the given TaskExecutor, and waits for the execution to finish.
runWithExecutor(TaskExecutor, Callable<T>) - Static method in class net.imglib2.parallel.Parallelization
Executes the given Callable with the given TaskExecutor, waits for the execution to finish and returns the result.
runWithNumThreads(int, Runnable) - Static method in class net.imglib2.parallel.Parallelization
To run an algorithm a given number of threads use:
runWithNumThreads(int, Callable<R>) - Static method in class net.imglib2.parallel.Parallelization
To run an algorithm a given number of threads use:
rx - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
When drawing a line, the line length.
rxs - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
Store X line bounds for all Y

S

s - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
The remaining number of steps in each dimension we still have to go.
s - Variable in class net.imglib2.realtransform.AbstractScale
 
sameTypesAndDimensions(M, M) - Static method in class net.imglib2.roi.Masks
Returns true iff the two masks have the same mask type, boundary type and dimensionality.
sample - Variable in class net.imglib2.PointSampleList.PointSampleListCursor
 
sample - Variable in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
sample(IterableInterval<Void>, RandomAccessible<T>) - Static method in class net.imglib2.roi.Regions
Given a region and an image, return an IterableInterval over the pixels of the image inside the mask.
sample(MaskInterval, RandomAccessible<T>) - Static method in class net.imglib2.roi.Regions
Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
sample(RealMaskRealInterval, RandomAccessible<T>) - Static method in class net.imglib2.roi.Regions
Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
sampler - Variable in class net.imglib2.algorithm.math.execution.FunctionCursor
 
sampler - Variable in class net.imglib2.KDTree.SamplerNode
 
sampler - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
Sampler<T> - Interface in net.imglib2
The Sampler interface provides access to a value whose type is specified by the generic parameter T.
SamplerConverter<A,B> - Interface in net.imglib2.converter.readwrite
TODO
SamplerNode(Sampler<T>, RealLocalizable, int, KDTree.SamplerNode<T>, KDTree.SamplerNode<T>) - Constructor for class net.imglib2.KDTree.SamplerNode
 
SamplerNode(KDTree.SamplerNode<T>) - Constructor for class net.imglib2.KDTree.SamplerNode
 
samples - Variable in class net.imglib2.PointSampleList
 
samples - Variable in class net.imglib2.RealPointSampleList
 
sampleWithMask(Mask, RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.Regions
Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
sampleWithRandomAccessible(RandomAccessible<B>, RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.Regions
Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
sampleWithRealMask(RealMask, RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.Regions
Given a mask and an image, return an IterableInterval over the pixels of the image inside the mask.
SamplingCursor<T> - Class in net.imglib2.roi.util
 
SamplingCursor(Cursor<Void>, RandomAccess<T>) - Constructor for class net.imglib2.roi.util.SamplingCursor
 
SamplingIterableInterval<T> - Class in net.imglib2.roi.util
 
SamplingIterableInterval(IterableInterval<Void>, RandomAccessible<T>) - Constructor for class net.imglib2.roi.util.SamplingIterableInterval
 
SamplingLineIterator<T> - Class in net.imglib2.algorithm.gauss
Deprecated.
SamplingLineIterator(int, long, RandomAccess<T>, Img<T>, T, T) - Constructor for class net.imglib2.algorithm.gauss.SamplingLineIterator
Deprecated.
Make a new SamplingLineIterator which iterates a 1d line of a certain length and is used as the input for the convolution operation
SamplingProjector2D<A,B> - Class in net.imglib2.display.projector.sampler
A general 2D Projector that uses three dimensions as input to create the 2D result.
SamplingProjector2D(int, int, RandomAccessible<A>, IterableInterval<B>, Converter<ProjectedSampler<A>, B>, int, long[]) - Constructor for class net.imglib2.display.projector.sampler.SamplingProjector2D
 
SamplingProjector2D(int, int, RandomAccessibleInterval<A>, IterableInterval<B>, Converter<ProjectedSampler<A>, B>, int) - Constructor for class net.imglib2.display.projector.sampler.SamplingProjector2D
 
save(A, ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractByteArrayIo
 
save(A, ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractCharArrayIo
 
save(A, ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractDoubleArrayIo
 
save(A, ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractFloatArrayIo
 
save(A, ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractIntArrayIo
 
save(A, ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractLongArrayIo
 
save(A, ByteBuffer, int) - Method in class net.imglib2.cache.img.AccessIo.AbstractShortArrayIo
 
save(A, ByteBuffer, int) - Method in interface net.imglib2.cache.img.AccessIo
 
saveChanges(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
Currently not implemented
scale - Static variable in class net.imglib2.converter.ARGBARGBDoubleConverter
 
scale - Variable in class net.imglib2.display.AbstractLinearRange
 
scale(double) - Method in class net.imglib2.realtransform.AffineTransform2D
Scale
scale(double, double) - Method in class net.imglib2.realtransform.AffineTransform2D
Scale
scale(double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
scale(double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
scale(double) - Method in class net.imglib2.realtransform.AffineTransform3D
Scale
scale(double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D
Scale
Scale - Class in net.imglib2.realtransform
n-d arbitrary scaling.
Scale(double[], Scale, RealPoint[]) - Constructor for class net.imglib2.realtransform.Scale
 
Scale(double...) - Constructor for class net.imglib2.realtransform.Scale
 
scale(RealInterval, double) - Static method in class net.imglib2.util.Intervals
Return an RealInterval that is scaled by the given factor.
scale(double[], double, double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = a * b, where a is a vector and b is scalar.
scale(double[][], double, double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A * b, where A is a matrix and b is scalar.
Scale2D - Class in net.imglib2.realtransform
2-d arbitrary scaling.
Scale2D(double[], Scale2D, RealPoint[]) - Constructor for class net.imglib2.realtransform.Scale2D
 
Scale2D(double, double) - Constructor for class net.imglib2.realtransform.Scale2D
 
Scale2D(double...) - Constructor for class net.imglib2.realtransform.Scale2D
 
Scale3D - Class in net.imglib2.realtransform
3-d arbitrary scaling.
Scale3D(double[], Scale3D, RealPoint[]) - Constructor for class net.imglib2.realtransform.Scale3D
 
Scale3D(double, double, double) - Constructor for class net.imglib2.realtransform.Scale3D
 
Scale3D(double...) - Constructor for class net.imglib2.realtransform.Scale3D
 
ScaleAndTranslation - Class in net.imglib2.realtransform
An n transform that applies a scaling first and then shifts coordinates.
ScaleAndTranslation(double[], double[]) - Constructor for class net.imglib2.realtransform.ScaleAndTranslation
 
ScaleAndTranslationGet - Interface in net.imglib2.realtransform
An n transform that applies a scaling first and then shifts coordinates.
ScaleAreaAveraging2d<T extends RealType<T>,R extends RealType<R>> - Class in net.imglib2.algorithm.integral
TODO
ScaleAreaAveraging2d(Img<T>, R, long[]) - Constructor for class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
Deprecated.
ScaleAreaAveraging2d(RandomAccessibleInterval<T>, R, long[], ImgFactory<R>) - Constructor for class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
ScaleAreaAveraging2d(Img<T>, R, Converter<T, R>, long[]) - Constructor for class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
Deprecated.
ScaleAreaAveraging2d(RandomAccessibleInterval<T>, R, Converter<T, R>, long[], ImgFactory<R>) - Constructor for class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
ScaleAsFunctionOfPosition<T extends Type<T> & MulFloatingPoint> - Class in net.imglib2.algorithm.gradient
 
ScaleAsFunctionOfPosition(RandomAccessibleInterval<T>, ToDoubleFunction<Localizable>) - Constructor for class net.imglib2.algorithm.gradient.ScaleAsFunctionOfPosition
 
ScaleAsFunctionOfPosition.ScaledRandomAccess<T extends Type<T> & MulFloatingPoint> - Class in net.imglib2.algorithm.gradient
 
scaled - Variable in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
ScaledPolarToTranslatedCartesianTransform2D - Class in net.imglib2.realtransform
Transforms scaled polar to translated cartesian coordinates.
ScaledPolarToTranslatedCartesianTransform2D(double, double, double, double) - Constructor for class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
ScaledRandomAccess(RandomAccess<T>, ToDoubleFunction<Localizable>) - Constructor for class net.imglib2.algorithm.gradient.ScaleAsFunctionOfPosition.ScaledRandomAccess
 
ScaleGet - Interface in net.imglib2.realtransform
An n-dimensional scale whose fields can be accessed through their dimension index or as a double array.
scaleHessianMatrix(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
scaleMove(double, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
score() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
The MSER score is computed as |R_i - R_{i-\Delta}| / |R_i|.
scrap - Variable in class net.imglib2.algorithm.math.abstractions.AUnaryFunction
 
scrap - Variable in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
scrap - Variable in class net.imglib2.algorithm.math.execution.RandomAccessibleOffsetSource
 
scrapC - Variable in class net.imglib2.algorithm.math.execution.FunctionCursor
 
scrapO - Variable in class net.imglib2.algorithm.math.execution.FunctionCursor
 
ScreenImage<T> - Interface in net.imglib2.display.screenimage
Toplevel interface for screen images.
sd - Variable in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
search - Variable in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
search - Variable in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
search(RealLocalizable) - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Perform k-nearest-neighbor search for a reference coordinate.
search(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
search(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
search(RealLocalizable) - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Perform nearest-neighbor search for a reference coordinate.
search(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
search(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
search(RealLocalizable, double, boolean) - Method in interface net.imglib2.neighborsearch.RadiusNeighborSearch
Perform neighbor search within a radius about a reference coordinate.
search(RealLocalizable, double, boolean) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
search - Variable in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
searchNode(KDTreeNode<T>) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
searchNode(KDTreeNode<T>) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
searchNode(KDTreeNode<T>, double) - Method in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
seconds() - Method in class net.imglib2.util.StopWatch
Get the total time the clock was running in seconds.
secondsToString(double) - Static method in class net.imglib2.util.StopWatch
 
seed(int) - Static method in class net.imglib2.test.RandomImgs
 
seeds - Variable in class net.imglib2.algorithm.labeling.Watershed
 
SelectiveSampler<T> - Class in net.imglib2.display.projector.sampler
Provides access to a set of predefined positions of a projected dimension
SelectiveSampler(int, long[]) - Constructor for class net.imglib2.display.projector.sampler.SelectiveSampler
 
semiAxisLength(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
semiAxisLength(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
semiAxisLength(int) - Method in interface net.imglib2.roi.geom.real.SuperEllipsoid
Returns the semi-axis length of the superellipsoid in a given dimension d
semiAxisLengths - Variable in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
SeparableKernelConvolution - Class in net.imglib2.algorithm.convolution.kernel
Convolution with a customizable separable kernel.
SeparableKernelConvolution() - Constructor for class net.imglib2.algorithm.convolution.kernel.SeparableKernelConvolution
 
SeparableSymmetricConvolution - Class in net.imglib2.algorithm.gauss3
Deprecated.
Use SeparableKernelConvolution instead. Convolution with a separable symmetric kernel.
SeparableSymmetricConvolution() - Constructor for class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
Deprecated.
 
seqDimensions - Variable in class net.imglib2.transform.integer.SequentializeTransform
 
SequentialExecutorService - Class in net.imglib2.parallel
A ExecutorService that is single-threaded, it never uses threads.
SequentialExecutorService() - Constructor for class net.imglib2.parallel.SequentialExecutorService
 
SequentializeTransform - Class in net.imglib2.transform.integer
Transform n-dimensional to m-dimensional coordinates (m<n) by flattening dimensions >m.
SequentializeTransform(long[], int) - Constructor for class net.imglib2.transform.integer.SequentializeTransform
 
SerialisationAccess(LabelingMapping<T>) - Constructor for class net.imglib2.roi.labeling.LabelingMapping.SerialisationAccess
Deprecated.
 
service - Variable in class net.imglib2.img.display.imagej.ImageJVirtualStack
 
set(T) - Method in class net.imglib2.algorithm.gauss.WritableLineIterator
Deprecated.
Sets the possibly converted value at the current location
set(RandomAccessible<T>, Localizable, long, T) - Static method in class net.imglib2.algorithm.region.Circles
Writes a circle in the target RandomAccessible.
set(RandomAccessible<T>, Localizable, long, int, int, T) - Static method in class net.imglib2.algorithm.region.Circles
Writes a circle in the target RandomAccessible.
set(RandomAccessible<T>, Localizable, long, long, T) - Static method in class net.imglib2.algorithm.region.Ellipses
Writes an ellipse in the target RandomAccessible.
set(RandomAccessible<T>, Localizable, long, long, int, int, T) - Static method in class net.imglib2.algorithm.region.Ellipses
Writes an ellipse in the target RandomAccessible.
set(long, int) - Method in interface net.imglib2.algorithm.util.Grids.SetForDimension
 
set(long, T) - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
set(int, T) - Method in class net.imglib2.img.list.AbstractListImg
 
set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
set(T) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
set(long, T) - Method in class net.imglib2.img.list.AbstractLongListImg
 
set(T) - Method in class net.imglib2.img.list.ListCursor
 
set(int, T) - Method in class net.imglib2.img.list.ListImg
 
set(T) - Method in class net.imglib2.img.list.ListLocalizingCursor
 
set(T) - Method in class net.imglib2.img.list.ListRandomAccess
 
set(int, T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
set(LabelingType<T>) - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
set(double...) - Method in class net.imglib2.realtransform.AbstractScale
Set the scale vector.
set(double...) - Method in class net.imglib2.realtransform.AbstractTranslation
Set the translation vector.
set(double, int) - Method in class net.imglib2.realtransform.AbstractTranslation
Set one value of the translation vector.
set(double, int, int) - Method in interface net.imglib2.realtransform.AffineSet
Set a field of the n×(n+1) affine transformation matrix.
set(double...) - Method in interface net.imglib2.realtransform.AffineSet
Set the n×(n+1) affine transformation matrix with row packed double values.
set(double[][]) - Method in interface net.imglib2.realtransform.AffineSet
Set the n×(n+1) affine transformation matrix with double values from a [row][column] addressed array.
set(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform
 
set(double[][]) - Method in class net.imglib2.realtransform.AffineTransform
 
set(double, int, int) - Method in class net.imglib2.realtransform.AffineTransform
 
set(double...) - Method in class net.imglib2.realtransform.AffineTransform
 
set(AffineTransform2D) - Method in class net.imglib2.realtransform.AffineTransform2D
 
set(double, int, int) - Method in class net.imglib2.realtransform.AffineTransform2D
 
set(double...) - Method in class net.imglib2.realtransform.AffineTransform2D
 
set(double[][]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
set(AffineTransform3D) - Method in class net.imglib2.realtransform.AffineTransform3D
 
set(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D
Set the affine matrix to:
set(double, int, int) - Method in class net.imglib2.realtransform.AffineTransform3D
 
set(double...) - Method in class net.imglib2.realtransform.AffineTransform3D
 
set(double[][]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
set(double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
set(HomographyTransform2D) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
set(double...) - Method in class net.imglib2.realtransform.PolynomialTransform2D
Set the coefficients.
set(double...) - Method in class net.imglib2.realtransform.Scale
 
set(double, double) - Method in class net.imglib2.realtransform.Scale2D
 
set(double...) - Method in class net.imglib2.realtransform.Scale2D
 
set(double, double, double) - Method in class net.imglib2.realtransform.Scale3D
 
set(double...) - Method in class net.imglib2.realtransform.Scale3D
 
set(double...) - Method in class net.imglib2.realtransform.Translation
Set the translation vector.
set(double, int) - Method in class net.imglib2.realtransform.Translation
Set one value of the translation vector.
set(double, double) - Method in class net.imglib2.realtransform.Translation2D
 
set(double...) - Method in class net.imglib2.realtransform.Translation2D
Set the translation vector.
set(double, int) - Method in class net.imglib2.realtransform.Translation2D
 
set(double, double, double) - Method in class net.imglib2.realtransform.Translation3D
 
set(double...) - Method in class net.imglib2.realtransform.Translation3D
Set the translation vector.
set(double, int) - Method in class net.imglib2.realtransform.Translation3D
 
set(LabelingType<T>) - Method in class net.imglib2.roi.labeling.LabelingType
 
set(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
set parameters to transform.
set(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
set parameters to transform.
set(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
set parameters to transform.
set(BasePairBitType.Base) - Method in interface net.imglib2.type.BasePairType
 
set(boolean) - Method in interface net.imglib2.type.BooleanType
 
set(int) - Method in class net.imglib2.type.Index
Set the index to index.
set(BasePairBitType.Base) - Method in class net.imglib2.type.label.BasePairBitType
 
set(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
 
set(BasePairBitType.Base) - Method in class net.imglib2.type.label.BasePairCharType
 
set(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
 
set(boolean) - Method in class net.imglib2.type.logic.BitType
 
set(BitType) - Method in class net.imglib2.type.logic.BitType
 
set(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
set(boolean) - Method in class net.imglib2.type.logic.BoolType
 
set(boolean) - Method in class net.imglib2.type.logic.NativeBoolType
Sets the primitive boolean value that is used to store this type.
set(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
set(double, double, double, double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
set(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
set(double, double, double, double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
set(NativeARGBDoubleType) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
set(int) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
set(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
set(int) - Method in class net.imglib2.type.numeric.ARGBType
 
set(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
set(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
set(double, double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
set(ComplexDoubleLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
set(double, double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
set(ComplexDoubleType) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
set(float, float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
set(ComplexFloatLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
set(float, float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
set(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
set(long) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
set(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
set(byte) - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
set(byte) - Method in class net.imglib2.type.numeric.integer.ByteType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
set(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
set(int) - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
set(int) - Method in class net.imglib2.type.numeric.integer.IntType
 
set(long) - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
set(long) - Method in class net.imglib2.type.numeric.integer.LongType
 
set(short) - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
set(short) - Method in class net.imglib2.type.numeric.integer.ShortType
 
set(byte[]) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
The first byte is the most significant byte, like in BigInteger.toByteArray().
set(BigInteger) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
set(long, long) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
set(long) - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
set(int) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
set(int) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
set(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
set(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
set(int) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
set(int) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
set(long) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
set(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
set(double, double, double, double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
set(ARGBDoubleType) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
set(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
set(double) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
set(double) - Method in class net.imglib2.type.numeric.real.DoubleType
 
set(float) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
set(double) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
set(float) - Method in class net.imglib2.type.numeric.real.FloatType
 
set(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
set(T) - Method in interface net.imglib2.type.Type
Sets the value of another Type.
set(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
set(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
set(int) - Method in class net.imglib2.type.volatiles.VolatileARGBType
 
set(byte) - Method in class net.imglib2.type.volatiles.VolatileByteType
 
set(double) - Method in class net.imglib2.type.volatiles.VolatileDoubleType
 
set(float) - Method in class net.imglib2.type.volatiles.VolatileFloatType
 
set(int) - Method in class net.imglib2.type.volatiles.VolatileIntType
 
set(long) - Method in class net.imglib2.type.volatiles.VolatileLongType
 
set(short) - Method in class net.imglib2.type.volatiles.VolatileShortType
 
set(int) - Method in class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
set(int) - Method in class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
set(long) - Method in class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
set(int) - Method in class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
set(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
setA(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setA(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
setA(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
setAdditionalNormalization(float) - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
setAllowBorderPeak(boolean) - Method in class net.imglib2.algorithm.math.PickImagePeaks
Set the behavior for finding peak at the image boundaries.
setAllowedToMoveInDim(boolean[]) - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
setAllowMaximaTolerance(boolean) - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
setAlpha(int) - Method in class net.imglib2.converter.RealARGBConverter
 
setAlpha(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
Set the rectangular radius of the window for perfoming the lanczos interpolation
setAxesFromImagePlus(ImgPlus<T>, ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
setB(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setB(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
setB(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
setBandPass(boolean) - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
setBandPassRadius(int, int) - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
setBeta(double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setBeta(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.logic.BitType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.logic.BoolType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.logic.NativeBoolType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.ByteType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.IntType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.LongType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.ShortType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
setBigInteger(BigInteger) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setBigInteger(BigInteger) - Method in interface net.imglib2.type.numeric.IntegerType
 
setBitDepth(int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setBits(long) - Method in class net.imglib2.type.AbstractBit64Type
Sets the lower nBits bits of the long value into the current "subLong" location of the LongAccess Note that "long value" does not refer to math, it is just a way to help to set arbitrary values.
setByte(byte) - Method in class net.imglib2.type.numeric.integer.GenericByteType
Sets the primitive byte value that is used to store this type.
setC(double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setC(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setCanMoveOutside(boolean) - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
setCenter(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
setCenter(double, int) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
setChar(char) - Method in class net.imglib2.type.label.BasePairCharType
 
setChildren(Ntree.NtreeNode<T>[]) - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
 
setClipping(boolean) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
The lanczos-interpolation can create values that are bigger or smaller than the original values, so they can be clipped to the range of the RealType if wanted
setCol(int, double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set column c of B to vector a.
setColorModel(ColorModel) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setCommonFadeOutDistance(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setCommonRelativeFadeOutDistance(float) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
setComplexNumber(float, float) - Method in interface net.imglib2.type.numeric.ComplexType
 
setComplexNumber(double, double) - Method in interface net.imglib2.type.numeric.ComplexType
 
setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setComplexNumber(float, float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setComplexNumber(double, double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setComplexNumber(float, float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setComplexNumber(double, double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setComponentInversion(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
Set for each target component, whether the source component it is taken from should be inverted.
setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
Set for each target dimensions from which source dimension it is taken.
setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.MixedTransform
Set for each target dimensions from which source dimension it is taken.
setComponentMapping(int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
Set for each target dimensions from which source dimension it is taken.
setComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.MixedTransform
Set which target dimensions are _not_ taken from source dimensions.
setComponentZero(boolean[]) - Method in class net.imglib2.transform.integer.SlicingTransform
Set which target dimensions are _not_ taken from source dimensions.
setComposite(int, boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Toggles the given position index's inclusion in composite values.
setComposite(boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Toggles composite mode globally.
setComposite(int, boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Toggles the given position index's inclusion in composite values.
setComposite(boolean) - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Toggles composite mode globally.
setComputeComplexConjugate(boolean) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setCount() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
 
setCount() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
setCount() - Method in class net.imglib2.algorithm.util.unionfind.LongHashMapUnionFind
 
setCount() - Method in interface net.imglib2.algorithm.util.unionfind.UnionFind
 
setCropBackToOriginalSize(boolean) - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
setCurrentSlice(int) - Method in class net.imglib2.display.projector.specialized.PlanarImgContainerSamplerImpl
 
setCustomOutOfBoundsStrategy(OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setData(Composite<T>) - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
setDeltaT(float) - Method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Set the integration constant value for the numerical integration scheme.
setDiffusionFunction(PeronaMalikAnisotropicDiffusion.DiffusionFunction) - Method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Set the diffusion function used to compute conduction coefficients.
setDiffusionTensor(RandomAccessibleInterval<FloatType>) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
Set the diffusion tensor that will be used for the diffusion process.
setDirection(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setDirty() - Method in class net.imglib2.cache.img.SingleCellArrayImg
If the cell is backed by a Dirty-capable access, flag it as dirty.
setDirty() - Method in interface net.imglib2.Dirty
 
setDirty(boolean) - Method in interface net.imglib2.Dirty
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyBooleanArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyBooleanArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileBooleanArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileBooleanArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
setDirty() - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
setDirty(boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
setDiv(boolean) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setDoScaling(boolean) - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
setElem(int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
setElem(int, int, int) - Method in class net.imglib2.display.awt.SignedByteDataBuffer
 
setElem(int, int, int) - Method in class net.imglib2.display.awt.SignedShortDataBuffer
 
setElem(int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElem(int, int, int) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElemDouble(int, double) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElemDouble(int, int, double) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElemFloat(int, float) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setElemFloat(int, int, float) - Method in class net.imglib2.display.awt.UnsignedIntDataBuffer
 
setEpsilon(double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setEstimate(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setEstimate(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setEstimateXfm(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setExecutor(ExecutorService) - Method in class net.imglib2.algorithm.convolution.AbstractMultiThreadedConvolution
Deprecated.
setExecutor(ExecutorService) - Method in interface net.imglib2.algorithm.convolution.Convolution
Deprecated.
setExecutor(ExecutorService) - Method in class net.imglib2.algorithm.convolution.LineConvolution
Deprecated.
setExecutor(ExecutorService) - Method in class net.imglib2.algorithm.convolution.MultiDimensionConvolution
Deprecated.
setExecutorService(ExecutorService) - Method in class net.imglib2.algorithm.dog.DogDetection
 
setExecutorService(ExecutorService) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
Set the executor service to use.
setExecutorService(ExecutorService) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
 
setExponent(float) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setExponent(double) - Method in class net.imglib2.roi.geom.real.AbstractWritableEllipsoid
Ellipsoids have exponents of 2.
setExponent(double) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
setExponent(double) - Method in interface net.imglib2.roi.geom.real.WritableEllipsoid
Ellipsoids have exponents of 2.
setExponent(double) - Method in interface net.imglib2.roi.geom.real.WritableSuperEllipsoid
Sets the exponent.
setExtendedOriginalImageSize(int[]) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setExtent(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Set the extent of the rectangle.
setExtent(double, int) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Set the extent for a single dimension
setFadeOutDistance(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setFFTImgFactory(ImgFactory<ComplexFloatType>) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setFFTOptimization(FourierTransform.FFTOptimization) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setFixZ(boolean) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setForwardTransform(DifferentiableRealTransform) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setFrequency(long[], long) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Sets the frequency count associated with a given bin.
setG(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setG(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
setG(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
setGeneralPath(GeneralPath) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
setGuess(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setImage(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
setImageExtension(int[]) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setImages(RandomAccessibleInterval<A>) - Static method in class net.imglib2.loops.LoopBuilder
 
setImages(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>) - Static method in class net.imglib2.loops.LoopBuilder
 
setImages(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, RandomAccessibleInterval<C>) - Static method in class net.imglib2.loops.LoopBuilder
 
setImages(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, RandomAccessibleInterval<C>, RandomAccessibleInterval<D>) - Static method in class net.imglib2.loops.LoopBuilder
 
setImages(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, RandomAccessibleInterval<C>, RandomAccessibleInterval<D>, RandomAccessibleInterval<E>) - Static method in class net.imglib2.loops.LoopBuilder
 
setImages(RandomAccessibleInterval<A>, RandomAccessibleInterval<B>, RandomAccessibleInterval<C>, RandomAccessibleInterval<D>, RandomAccessibleInterval<E>, RandomAccessibleInterval<F>) - Static method in class net.imglib2.loops.LoopBuilder
 
setImageSigma(double) - Method in class net.imglib2.algorithm.dog.DogDetection
 
setImaginary(float) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
setImaginary(float) - Method in interface net.imglib2.type.numeric.ComplexType
 
setImaginary(double) - Method in interface net.imglib2.type.numeric.ComplexType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setImaginary(float) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
setImaginary(double) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
setImaginary(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setImaginary(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setImg(RandomAccessibleInterval<R>) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setImg(RandomAccessible<R>, Interval) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setImgFFT(Img<ComplexFloatType>) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
Sets the FFT image as computed, be very careful with this method, if any parameters of the FFT are wrong, this will fail WARNING: if you do not set keepImgFFT, this image will be modified during convolution
setInitStep(double) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setInPlace(boolean) - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
setInt(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
Sets the primitive int value that is used to store this type.
setInteger(int) - Method in class net.imglib2.type.logic.BitType
 
setInteger(long) - Method in class net.imglib2.type.logic.BitType
 
setInteger(int) - Method in class net.imglib2.type.logic.BoolType
 
setInteger(long) - Method in class net.imglib2.type.logic.BoolType
 
setInteger(int) - Method in class net.imglib2.type.logic.NativeBoolType
 
setInteger(long) - Method in class net.imglib2.type.logic.NativeBoolType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.ByteLongAccessType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.ByteType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.ByteType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.IntLongAccessType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.IntType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.IntType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.LongLongAccessType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.LongType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.LongType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.ShortLongAccessType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.ShortType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.ShortType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
setInteger(int) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setInteger(long) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setInteger(int) - Method in interface net.imglib2.type.numeric.IntegerType
 
setInteger(long) - Method in interface net.imglib2.type.numeric.IntegerType
 
setIntensityImage(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.labeling.Watershed
Provide the intensity image to be watershedded.
setInverseTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
setJacobianEstimateStep(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setJacobianRegularizationEps(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setKeepDoGImg(boolean) - Method in class net.imglib2.algorithm.dog.DogDetection
 
setKeepImgFFT(boolean) - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
By default, he will not do the computation in-place and keep the imgFFT
setKeepImgFFT(boolean) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setKernel(RandomAccessibleInterval<R>) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setKernel(RandomAccessible<R>, Interval) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setKernelFFT(Img<ComplexFloatType>) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
Sets the FFT kernel as computed, be very careful with this method, if any parameters of the FFT are wrong, this will fail
setLabel(T) - Method in class net.imglib2.labeling.LabelingType
Deprecated.
Assign a pixel a single label
setLabeling(List<T>) - Method in class net.imglib2.labeling.LabelingType
Deprecated.
Set the labeling at the current pixel
setLabeling(T[]) - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
setLabelingCursorStrategy(LabelingROIStrategy<T, ? extends Labeling<T>>) - Method in class net.imglib2.labeling.AbstractLabeling
Deprecated.
Use an alternative strategy for making labeling cursors.
setLabelSets(List<Set<T>>) - Method in class net.imglib2.roi.labeling.LabelingMapping.SerialisationAccess
Deprecated.
setLabelSets(List<Set<T>>) - Method in class net.imglib2.roi.labeling.LabelingMapping
Replaces the current label mapping, with the mapping given as list of sets.
setLambda(double) - Method in class net.imglib2.realtransform.InterpolatedRealTransform
 
setLinkedType(T) - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
setLinkedType(T) - Method in class net.imglib2.img.AbstractNativeImg
 
setLinkedType(T) - Method in class net.imglib2.img.AbstractNativeLongAccessImg
 
setLinkedType(T) - Method in interface net.imglib2.img.NativeImg
 
setLinkedType(T) - Method in interface net.imglib2.img.NativeLongAccessImg
 
setLong(long) - Method in class net.imglib2.type.numeric.integer.GenericLongType
Sets the primitive long value that is used to store this type.
setLUT(ColorTable) - Method in class net.imglib2.converter.RealLUTConverter
 
setMax(double) - Method in class net.imglib2.display.AbstractLinearRange
 
setMax(double) - Method in interface net.imglib2.display.LinearRange
 
setMaximaTolerance(float) - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
setMaxIterations(int) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setMaxIters(int) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setMaxLineSearchTries(int) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setMaxNumMoves(int) - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
setMaxStep(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setMin(double) - Method in class net.imglib2.display.AbstractLinearRange
 
setMin(double) - Method in interface net.imglib2.display.LinearRange
 
setMin(int[]) - Method in class net.imglib2.iterator.OffsetableIntervalIterator
Adjust the offset and reset the iterator
setMin(long[]) - Method in class net.imglib2.iterator.OffsetableIntervalIterator
Adjust the offset and reset the iterator
setMin(int[]) - Method in class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
Adjust the offset and reset the iterator
setMin(long[]) - Method in class net.imglib2.iterator.OffsetableLocalizingIntervalIterator
Adjust the offset and reset the iterator
setMinAndMax(double, double) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setMinExtension(int) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setMinf(double) - Method in class net.imglib2.algorithm.dog.DogDetection
 
setMinFadeOutDistance(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
setMinMax(RandomAccessibleInterval<S>, Converter<S, FloatType>) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStackFloat
 
setMinMax(double, double) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
setMinPeakValue(double) - Method in class net.imglib2.algorithm.dog.DogDetection
 
setMinStep(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setNewImageSize(long[]) - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
setNormalizeMinPeakValue(boolean) - Method in class net.imglib2.algorithm.dog.DogDetection
 
setNumThreads(int) - Method in class net.imglib2.algorithm.dog.DogDetection
 
setNumThreads() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
setNumThreads(int) - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
setNumThreads() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setNumThreads(int) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setNumThreads() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
setNumThreads(int) - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
setNumThreads(int) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
setNumThreads(int) - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
setNumThreads() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
setNumThreads(int) - Method in class net.imglib2.algorithm.localization.PeakFitter
 
setNumThreads() - Method in interface net.imglib2.algorithm.MultiThreaded
Sets the number of threads to the amount of processors available
setNumThreads(int) - Method in interface net.imglib2.algorithm.MultiThreaded
Sets the number of threads
setNumThreads() - Method in class net.imglib2.algorithm.MultiThreadedAlgorithm
 
setNumThreads(int) - Method in class net.imglib2.algorithm.MultiThreadedAlgorithm
 
setNumThreads() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
setNumThreads(int) - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
setOf() - Static method in enum net.imglib2.img.basictypeaccess.AccessFlags
 
setOf(AccessFlags) - Static method in enum net.imglib2.img.basictypeaccess.AccessFlags
 
setOf(AccessFlags, AccessFlags) - Static method in enum net.imglib2.img.basictypeaccess.AccessFlags
 
setOf(AccessFlags...) - Static method in enum net.imglib2.img.basictypeaccess.AccessFlags
 
setOffset(double[]) - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
setOne() - Method in class net.imglib2.type.logic.BitType
 
setOne() - Method in class net.imglib2.type.logic.NativeBoolType
 
setOne() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setOne() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
setOne() - Method in class net.imglib2.type.numeric.ARGBType
 
setOne() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
setOne() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setOne() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
setOne() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
setOne() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setOne() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setOne() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
setOne() - Method in class net.imglib2.type.numeric.real.FloatType
 
SetOne - Interface in net.imglib2.type.operators
 
setOne() - Method in interface net.imglib2.type.operators.SetOne
 
setOne() - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
setOne() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setOne() - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
setOrigin(long[]) - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
setOrigin(RealLocalizable) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Change the origin of the ellipse.
setOrigin(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Set the origin of the ellipse to the given coordinates
setOrigin(double, int) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Set the origin of the ellipse along the given dimension
setOrigin(RealLocalizable) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Set the origin using a point.
setOrigin(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Set the origin using a double array of coordinates.
setOrigin(double, int) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
Set the origin for a particular coordinate
setOriginalOffset(int[]) - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
setOriginalSize(int[]) - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
setOutput(RandomAccessibleInterval<R>) - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setOutputContainerFactory(ImgFactory<T>) - Method in class net.imglib2.algorithm.transformation.ImageTransform
setOutputDimensions(long, long) - Method in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
Set the desired dimensions of the scaled image obtainable after invoking ScaleAreaAveraging2d.process() via ScaleAreaAveraging2d.getResult().
setOutputImgFactory(ImgFactory<T>) - Method in class net.imglib2.algorithm.transformation.ImageTransform
Set the image factory which will be used for output.
setOutputLabeling(Labeling<L>) - Method in class net.imglib2.algorithm.labeling.Watershed
Set the output labeling where the results will be stored.
setPadded(boolean) - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
setPixels(Object, int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setPixelsZeroBasedIndex(int, Object) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
This method is used internally by AbstractVirtualStack to implement AbstractVirtualStack.setPixels(java.lang.Object, int).
setPixelsZeroBasedIndex(int, Object) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
 
setPixelsZeroBasedIndex(int, Object) - Method in class net.imglib2.img.display.imagej.PlanarImgToVirtualStack
 
setPlane(int, A) - Method in interface net.imglib2.img.basictypeaccess.PlanarAccess
 
setPlane(int, ByteArray) - Method in class net.imglib2.img.imageplus.ByteImagePlus
This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)
setPlane(int, FloatArray) - Method in class net.imglib2.img.imageplus.FloatImagePlus
This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)
setPlane(int, IntArray) - Method in class net.imglib2.img.imageplus.IntImagePlus
This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)
setPlane(int, ShortArray) - Method in class net.imglib2.img.imageplus.ShortImagePlus
This has to be overwritten, otherwise two different instances exist (one in the imageplus, one in the mirror)
setPlane(int, A) - Method in class net.imglib2.img.planar.PlanarImg
 
setPoint1(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
setPoint1(double, int) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
setPoint1(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
setPoint1(double, int) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
setPoint2(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
setPoint2(double, int) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
setPoint2(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
setPoint2(double, int) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
setPosition(Localizable) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
setPosition(int[]) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
setPosition(long[]) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
setPosition(int, int) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
setPosition(long, int) - Method in class net.imglib2.AbstractWrappedPositionableLocalizable
 
setPosition(Localizable) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
setPosition(int[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
setPosition(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
setPosition(int, int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
setPosition(long, int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
setPosition(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(float[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(double[]) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(float, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(double, int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.converter.read.BiConvertedRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(float[]) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(double[]) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(float, int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(double, int) - Method in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.cell.CellRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.list.ListRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
setPosition(Localizable) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
setPosition(int[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
setPosition(long[]) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
setPosition(int[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(RealLocalizable) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(int[]) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(long[]) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(double[]) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(float[]) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(int, int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(long, int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(float, int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(double, int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setPosition(Localizable) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(RealLocalizable) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(int[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(long[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(double[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(float[]) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(int, int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(long, int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(float, int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(double, int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
setPosition(RealLocalizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(float[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(double[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(float, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(double, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.Point
 
setPosition(int[]) - Method in class net.imglib2.Point
 
setPosition(long[]) - Method in class net.imglib2.Point
 
setPosition(int, int) - Method in class net.imglib2.Point
 
setPosition(long, int) - Method in class net.imglib2.Point
 
setPosition(Localizable) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(int[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(long[]) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(int, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(long, int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.Floor
 
setPosition(float[]) - Method in class net.imglib2.position.transform.Floor
 
setPosition(double[]) - Method in class net.imglib2.position.transform.Floor
 
setPosition(float, int) - Method in class net.imglib2.position.transform.Floor
 
setPosition(double, int) - Method in class net.imglib2.position.transform.Floor
 
setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(float[]) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(double[]) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(float, int) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(double, int) - Method in class net.imglib2.position.transform.FloorOffset
 
setPosition(RealLocalizable) - Method in class net.imglib2.position.transform.Round
 
setPosition(float[]) - Method in class net.imglib2.position.transform.Round
 
setPosition(double[]) - Method in class net.imglib2.position.transform.Round
 
setPosition(float, int) - Method in class net.imglib2.position.transform.Round
 
setPosition(double, int) - Method in class net.imglib2.position.transform.Round
 
setPosition(Localizable) - Method in interface net.imglib2.Positionable
Place the element at the same location as a given Localizable
setPosition(int[]) - Method in interface net.imglib2.Positionable
Set the position of the element.
setPosition(long[]) - Method in interface net.imglib2.Positionable
Set the position of the element.
setPosition(int, int) - Method in interface net.imglib2.Positionable
Set the position of the element for one dimension.
setPosition(long, int) - Method in interface net.imglib2.Positionable
Set the position of the element for one dimension.
setPosition(Localizable) - Method in class net.imglib2.RealPoint
 
setPosition(int[]) - Method in class net.imglib2.RealPoint
 
setPosition(long[]) - Method in class net.imglib2.RealPoint
 
setPosition(int, int) - Method in class net.imglib2.RealPoint
 
setPosition(long, int) - Method in class net.imglib2.RealPoint
 
setPosition(RealLocalizable) - Method in class net.imglib2.RealPoint
 
setPosition(float[]) - Method in class net.imglib2.RealPoint
 
setPosition(double[]) - Method in class net.imglib2.RealPoint
 
setPosition(float, int) - Method in class net.imglib2.RealPoint
 
setPosition(double, int) - Method in class net.imglib2.RealPoint
 
setPosition(RealLocalizable) - Method in interface net.imglib2.RealPositionable
Place the element at the same location as a given RealLocalizable
setPosition(float[]) - Method in interface net.imglib2.RealPositionable
Set the position of the element.
setPosition(double[]) - Method in interface net.imglib2.RealPositionable
Set the position of the element.
setPosition(float, int) - Method in interface net.imglib2.RealPositionable
Set the position of the element for one dimension.
setPosition(double, int) - Method in interface net.imglib2.RealPositionable
Set the position of the element for one dimension.
setPosition(int[]) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(float[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(double[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(float, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(double, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(float[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(double[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(float, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(double, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(Localizable) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(float[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(double[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(int[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(long[]) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(float, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(double, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(int, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(long, int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
setPosition(Localizable) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
setPosition(RealLocalizable) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(float[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(double[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(float, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(double, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(Localizable) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(int[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(long[]) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(int, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(long, int) - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
setPosition(Localizable) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
setPosition(int[]) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
setPosition(long[]) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
setPosition(int, int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
setPosition(long, int) - Method in class net.imglib2.roi.util.OffsetPositionableLocalizable
 
setPosition(Localizable) - Method in class net.imglib2.roi.util.PositionableInterval
 
setPosition(int[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
setPosition(long[]) - Method in class net.imglib2.roi.util.PositionableInterval
 
setPosition(int, int) - Method in class net.imglib2.roi.util.PositionableInterval
 
setPosition(long, int) - Method in class net.imglib2.roi.util.PositionableInterval
 
setPosition(RealLocalizable) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(float[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(double[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(float, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(double, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(Localizable) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(int[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(long[]) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(int, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(long, int) - Method in class net.imglib2.roi.util.RealLocalizableRealPositionableWrapper
 
setPosition(Localizable) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.MixedRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(int[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(long[]) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(int, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(long, int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
setPosition(Localizable) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.SlicingRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(int[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(long[]) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(int, int) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(long, int) - Method in class net.imglib2.view.StackView.DefaultRA
 
setPosition(Localizable) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(int[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(long[]) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(int, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(long, int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
setPosition(Localizable) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.TransformRandomAccess
 
setPosition(Localizable) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(int[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(long[]) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(int, int) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPosition(long, int) - Method in class net.imglib2.view.TranslationRandomAccess
 
setPositionAndGet(long...) - Method in interface net.imglib2.RandomAccess
Convenience method that moves the RealRandomAccess to the given position and gets the value at that position.
setPositionAndGet(int...) - Method in interface net.imglib2.RandomAccess
Convenience method that moves the RealRandomAccess to the given position and gets the value at that position.
setPositionAndGet(Localizable) - Method in interface net.imglib2.RandomAccess
Convenience method that moves the RealRandomAccess to the given position and gets the value at that position.
setPositionAndGet(double...) - Method in interface net.imglib2.RealRandomAccess
Convenience method that moves the RealRandomAccess to the given position and gets the value at that position.
setPositionAndGet(float...) - Method in interface net.imglib2.RealRandomAccess
Convenience method that moves the RealRandomAccess to the given position and gets the value at that position.
setPositionAndGet(RealLocalizable) - Method in interface net.imglib2.RealRandomAccess
Convenience method that moves the RealRandomAccess to the given position and gets the value at that position.
setPositionDim0(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
Sets the ArrayRandomAccess to a certain position in dimension 0 Careful: it assumes that it is only a one-dimensional image, all other dimensions would be set to zero (this saves one subtraction)
setPositionDim0(long) - Method in class net.imglib2.img.array.ArrayRandomAccess
Sets the ArrayRandomAccess to a certain position in dimension 0 Careful: it assumes that it is only a one-dimensional image, all other dimensions would be set to zero (this saves one subtraction)
setPositionDim0(int) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
Sets the UnsafeRandomAccess to a certain position in dimension 0 Careful: it assumes that it is only a one-dimensional image, all other dimensions would be set to zero (this saves one subtraction)
setPositionDim0(long) - Method in class net.imglib2.img.unsafe.UnsafeRandomAccess
Sets the UnsafeRandomAccess to a certain position in dimension 0 Careful: it assumes that it is only a one-dimensional image, all other dimensions would be set to zero (this saves one subtraction)
setPreProcessing(FourierTransform.PreProcessing) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setProcessor(ImageProcessor, int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setR(double) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setR(double) - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
setR(double) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
setRadii(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Set all of the radii
setRadius(double) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Set all radii similarly so that the ellipse is really a circle
setRadius(double, int) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
Set the radius along the given dimension
setRadius(double) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
 
setRadius(double) - Method in interface net.imglib2.roi.geom.real.WritableSphere
Sets the radius.
setRandom(Random) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
setRandomAccess(RandomAccess<T>) - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
setRandomAccess(RandomAccess<T>) - Method in interface net.imglib2.display.projector.sampler.ProjectedSampler
 
setRandomAccess(RandomAccess<T>) - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
setReal(float) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
setReal(double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
setReal(float) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
setReal(double) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
setReal(float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
setReal(double) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
setReal(float) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
setReal(double) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
setReal(float) - Method in interface net.imglib2.type.numeric.ComplexType
 
setReal(double) - Method in interface net.imglib2.type.numeric.ComplexType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setReal(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
setReal(double) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.LongType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setReal(double) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setReal(double) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setReal(float) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setReal(double) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setReal(float) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
setReal(double) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
setReal(float) - Method in class net.imglib2.type.numeric.real.DoubleType
 
setReal(double) - Method in class net.imglib2.type.numeric.real.DoubleType
 
setReal(float) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
setReal(double) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
setReal(float) - Method in class net.imglib2.type.numeric.real.FloatType
 
setReal(double) - Method in class net.imglib2.type.numeric.real.FloatType
 
setReal(float) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setReal(double) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setRearrangement(FourierTransform.Rearrangement) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setRearrangement(FourierTransform.Rearrangement) - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
setRelativeFadeOutDistance(float) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setRelativeImageExtension(float) - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
setReturnInvalidPeaks(boolean) - Method in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
setRoi(Rectangle) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setRow(int, double[], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set row r of B to vector a.
setSeeds(Labeling<L>) - Method in class net.imglib2.algorithm.labeling.Watershed
Provide the seeds that mark the watersheds.
setSemiAxisLength(int, double) - Method in class net.imglib2.roi.geom.real.AbstractWritableSphere
Sets the radius of this sphere.
setSemiAxisLength(int, double) - Method in class net.imglib2.roi.geom.real.AbstractWritableSuperEllipsoid
 
setSemiAxisLength(int, double) - Method in interface net.imglib2.roi.geom.real.WritableSuperEllipsoid
Sets the semi-axis length in dimension d.
setShort(short) - Method in class net.imglib2.type.numeric.integer.GenericShortType
Sets the primitive short value that is used to store this type.
setSideLength(int, double) - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
 
setSideLength(int, double) - Method in interface net.imglib2.roi.geom.real.WritableBox
Updates the length of the side in dimension d.
setSlice(int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
setSlice(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
setSliceLabel(String, int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setSpan(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
Set the span of this neighborhood.
setStep(double) - Method in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
setStepSize(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setStepSizeMaxTries(int) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setStructuringElement(long[][]) - Method in class net.imglib2.algorithm.labeling.Watershed
Set the structuring element that defines the connectivity
setSuppression(double) - Method in class net.imglib2.algorithm.math.PickImagePeaks
Sets the peak suppression region to a spheroid of radius r.
setSuppression(double[]) - Method in class net.imglib2.algorithm.math.PickImagePeaks
Sets the peak suppression region to an ellipsoid with dimensional axes corresponding to the elements in r.
setTarget(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
 
setTarget(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setTolerance(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
setTranslation(double...) - Method in class net.imglib2.realtransform.AffineTransform3D
Initialize the translation with a given vector
setTranslation(long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
setTranslation(long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
setTranslation(long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
setupFFTs(Interval, Interval, long[], long[]) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
setValid(boolean) - Method in class net.imglib2.Volatile
 
setValue(T) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent
Set the threshold value (e.g., grey-level) for this component.
setValue(int, int) - Method in class net.imglib2.converter.readwrite.longaccess.ARGBLongAccessTypeARGBTypeConverter.ConvertedAccess
 
setValue(int, byte) - Method in class net.imglib2.converter.readwrite.longaccess.ByteLongAccessTypeByteTypeConverter.ConvertedAccess
 
setValue(int, double) - Method in class net.imglib2.converter.readwrite.longaccess.ComplexDoubleLongAccessTypeComplexDoubleTypeConverter.ConvertedAccess
 
setValue(int, float) - Method in class net.imglib2.converter.readwrite.longaccess.ComplexFloatLongAccessTypeComplexFloatTypeConverter.ConvertedAccess
 
setValue(int, double) - Method in class net.imglib2.converter.readwrite.longaccess.DoubleLongAccessTypeDoubleTypeConverter.ConvertedAccess
 
setValue(int, float) - Method in class net.imglib2.converter.readwrite.longaccess.FloatLongAccessTypeFloatTypeConverter.ConvertedAccess
 
setValue(int, int) - Method in class net.imglib2.converter.readwrite.longaccess.IntLongAccessTypeIntTypeConverter.ConvertedAccess
 
setValue(int, long) - Method in class net.imglib2.converter.readwrite.longaccess.LongLongAccessTypeLongTypeConverter.ConvertedAccess
 
setValue(int, short) - Method in class net.imglib2.converter.readwrite.longaccess.ShortLongAccessTypeShortTypeConverter.ConvertedAccess
 
setValue(int, byte) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedByteLongAccessTypeUnsignedByteTypeConverter.ConvertedAccess
 
setValue(int, int) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedIntLongAccessTypeUnsignedIntTypeConverter.ConvertedAccess
 
setValue(int, long) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedLongLongAccessTypeUnsignedLongTypeConverter.ConvertedAccess
 
setValue(int, short) - Method in class net.imglib2.converter.readwrite.longaccess.UnsignedShortLongAccessTypeUnsignedShortTypeConverter.ConvertedAccess
 
setValue(int, boolean) - Method in class net.imglib2.img.basictypeaccess.array.AbstractBooleanArray
 
setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
setValue(int, boolean) - Method in class net.imglib2.img.basictypeaccess.array.DirtyBooleanArray
 
setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
setValue(int, boolean) - Method in interface net.imglib2.img.basictypeaccess.BooleanAccess
 
setValue(int, byte) - Method in interface net.imglib2.img.basictypeaccess.ByteAccess
 
setValue(int, char) - Method in interface net.imglib2.img.basictypeaccess.CharAccess
 
setValue(int, double) - Method in interface net.imglib2.img.basictypeaccess.DoubleAccess
 
setValue(int, float) - Method in interface net.imglib2.img.basictypeaccess.FloatAccess
 
setValue(int, int) - Method in interface net.imglib2.img.basictypeaccess.IntAccess
 
setValue(int, long) - Method in interface net.imglib2.img.basictypeaccess.LongAccess
 
setValue(int, short) - Method in interface net.imglib2.img.basictypeaccess.ShortAccess
 
setValue(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileBooleanArray
 
setValue(int, byte) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
setValue(int, char) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
setValue(int, double) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
setValue(int, float) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
setValue(int, int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
setValue(int, long) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
setValue(int, short) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
setValue(long, byte) - Method in interface net.imglib2.img.basictypelongaccess.ByteLongAccess
 
setValue(long, char) - Method in interface net.imglib2.img.basictypelongaccess.CharLongAccess
 
setValue(long, double) - Method in interface net.imglib2.img.basictypelongaccess.DoubleLongAccess
 
setValue(long, float) - Method in interface net.imglib2.img.basictypelongaccess.FloatLongAccess
 
setValue(long, int) - Method in interface net.imglib2.img.basictypelongaccess.IntLongAccess
 
setValue(long, long) - Method in interface net.imglib2.img.basictypelongaccess.LongLongAccess
 
setValue(long, short) - Method in interface net.imglib2.img.basictypelongaccess.ShortLongAccess
 
setValue(int, byte) - Method in class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
setValue(long, byte) - Method in class net.imglib2.img.basictypelongaccess.unsafe.ByteUnsafe
 
setValue(int, char) - Method in class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
setValue(long, char) - Method in class net.imglib2.img.basictypelongaccess.unsafe.CharUnsafe
 
setValue(int, double) - Method in class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
setValue(long, double) - Method in class net.imglib2.img.basictypelongaccess.unsafe.DoubleUnsafe
 
setValue(int, float) - Method in class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
setValue(long, float) - Method in class net.imglib2.img.basictypelongaccess.unsafe.FloatUnsafe
 
setValue(int, int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
setValue(long, int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.IntUnsafe
 
setValue(int, long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
setValue(long, long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.LongUnsafe
 
setValue(int, byte) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
setValue(long, byte) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningByteUnsafe
 
setValue(int, char) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
setValue(long, char) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningCharUnsafe
 
setValue(int, double) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
setValue(long, double) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningDoubleUnsafe
 
setValue(int, float) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
setValue(long, float) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningFloatUnsafe
 
setValue(int, int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
setValue(long, int) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningIntUnsafe
 
setValue(int, long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
setValue(long, long) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningLongUnsafe
 
setValue(int, short) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
setValue(long, short) - Method in class net.imglib2.img.basictypelongaccess.unsafe.owning.OwningShortUnsafe
 
setValue(int, short) - Method in class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
setValue(long, short) - Method in class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
setValue(long, byte) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedByteLongAccess
 
setValue(int, byte) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedByteLongAccess
 
setValue(long, char) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedCharLongAccess
 
setValue(int, char) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedCharLongAccess
 
setValue(long, double) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedDoubleLongAccess
 
setValue(int, double) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedDoubleLongAccess
 
setValue(long, float) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedFloatLongAccess
 
setValue(int, float) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedFloatLongAccess
 
setValue(long, int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedIntLongAccess
 
setValue(int, int) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedIntLongAccess
 
setValue(long, long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedLongLongAccess
 
setValue(int, long) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedLongLongAccess
 
setValue(long, short) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedShortLongAccess
 
setValue(int, short) - Method in class net.imglib2.img.basictypelongaccess.wrapped.WrappedShortLongAccess
 
setValue(int, byte) - Method in class net.imglib2.img.io.proxyaccess.ByteAccessProxy
 
setValue(int, float) - Method in class net.imglib2.img.io.proxyaccess.FloatAccessProxy
 
setValue(int, int) - Method in class net.imglib2.img.io.proxyaccess.IntAccessProxy
 
setValue(int, long) - Method in class net.imglib2.img.io.proxyaccess.LongAccessProxy
 
setValue(int, short) - Method in class net.imglib2.img.io.proxyaccess.ShortAccessProxy
 
setValue(int, boolean) - Method in class net.imglib2.img.sparse.BooleanNtree
 
setValue(int, byte) - Method in class net.imglib2.img.sparse.ByteNtree
 
setValue(int, char) - Method in class net.imglib2.img.sparse.CharNtree
 
setValue(int, double) - Method in class net.imglib2.img.sparse.DoubleNtree
 
setValue(int, float) - Method in class net.imglib2.img.sparse.FloatNtree
 
setValue(int, int) - Method in class net.imglib2.img.sparse.IntNtree
 
setValue(int, long) - Method in class net.imglib2.img.sparse.LongNtree
 
setValue(T) - Method in class net.imglib2.img.sparse.Ntree.NtreeNode
 
setValue(int, short) - Method in class net.imglib2.img.sparse.ShortNtree
 
setValue(T) - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
setValue(byte) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
setValue(byte) - Method in class net.imglib2.type.numeric.integer.GenericByteType
Deprecated.
setValue(int) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
setValue(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
Deprecated.
setValue(long) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
setValue(long) - Method in class net.imglib2.type.numeric.integer.GenericLongType
Deprecated.
setValue(short) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
setValue(short) - Method in class net.imglib2.type.numeric.integer.GenericShortType
Deprecated.
setVertexPosition(int, double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Change the position of a vertex
setVertexPosition(int, float[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Change the position of a vertex
setVertexPosition(int, RealLocalizable) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Change the position of a vertex using a localizable
setVoxels(int, int, int, int, int, int, float[]) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setVoxels(int, int, int, int, int, int, float[], int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
setWritable(boolean) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
Set if the ImageStack is writable.
setZero() - Method in class net.imglib2.type.logic.BitType
 
setZero() - Method in class net.imglib2.type.logic.NativeBoolType
 
setZero() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
setZero() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
setZero() - Method in class net.imglib2.type.numeric.ARGBType
 
setZero() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
setZero() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
setZero() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
setZero() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
setZero() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
setZero() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
setZero() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
setZero() - Method in class net.imglib2.type.numeric.real.FloatType
 
SetZero - Interface in net.imglib2.type.operators
 
setZero() - Method in interface net.imglib2.type.operators.SetZero
 
setZero() - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
setZero() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
setZero() - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
shape - Variable in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorEven
 
shape - Variable in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorOdd
 
shape - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
Shape - Interface in net.imglib2.algorithm.neighborhood
A factory for Accessibles on Neighborhoods.
shapeFromOrder(int) - Static method in interface net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolator
Return a RectangleShape This is necessary because rectangles always have an extents equal to an odd number of pixels.
shear(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Positive shear transform of a RandomAccessible using ShearTransform, i.e.
shear(RandomAccessible<T>, Interval, int, int) - Static method in class net.imglib2.view.Views
Positive shear transform of a RandomAccessible using ShearTransform, i.e.
shearDimension - Variable in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
ShearTransform - Class in net.imglib2.transform.integer.shear
Forward implementation of the most simple case of a shear transform: coordinate[ shearDimension ] += coordinate[ referenceDimension ]
ShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.ShearTransform
 
ShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.ShearTransform
Protected constructor for passing an inverse to avoid construction of unnecessary objects.
SHORT(Function<NativeLongAccessImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeLongAccessTypeFactory
 
SHORT(Function<NativeImg<T, ? extends A>, T>) - Static method in class net.imglib2.type.NativeTypeFactory
 
ShortAccess - Interface in net.imglib2.img.basictypeaccess
TODO
ShortAccessProxy<T extends GenericShortType<T>> - Class in net.imglib2.img.io.proxyaccess
Proxy access over any GenericShortType container.
ShortAccessProxy(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.img.io.proxyaccess.ShortAccessProxy
 
ShortArray - Class in net.imglib2.img.basictypeaccess.array
 
ShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ShortArray
 
ShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ShortArray
 
shortArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
ShortArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.ShortArrayType
 
ShortAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ShortType, ShortArray>.
ShortAWTScreenImage(ArrayImg<ShortType, ShortArray>) - Constructor for class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
 
ShortAWTScreenImage(ShortType, ShortArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
 
ShortImagePlus<T extends NativeType<T>> - Class in net.imglib2.img.imageplus
ImagePlusImg for short-stored data.
ShortImagePlus(long[], Fraction) - Constructor for class net.imglib2.img.imageplus.ShortImagePlus
 
ShortImagePlus(ImagePlus) - Constructor for class net.imglib2.img.imageplus.ShortImagePlus
 
ShortLongAccess - Interface in net.imglib2.img.basictypelongaccess
TODO
ShortLongAccessType - Class in net.imglib2.type.numeric.integer
 
ShortLongAccessType(NativeLongAccessImg<?, ? extends ShortLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.ShortLongAccessType
 
ShortLongAccessType(short) - Constructor for class net.imglib2.type.numeric.integer.ShortLongAccessType
 
ShortLongAccessType(ShortLongAccess) - Constructor for class net.imglib2.type.numeric.integer.ShortLongAccessType
 
ShortLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.ShortLongAccessType
 
ShortLongAccessTypeShortTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
ShortLongAccessTypeShortTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.ShortLongAccessTypeShortTypeConverter
 
ShortLongAccessTypeShortTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
ShortNtree - Class in net.imglib2.img.sparse
 
ShortNtree(long[], long[], short) - Constructor for class net.imglib2.img.sparse.ShortNtree
 
ShortNtree(Ntree<Short>, long[]) - Constructor for class net.imglib2.img.sparse.ShortNtree
 
shorts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
shorts(short[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ShortType, ShortArray> reusing a passed short[] array.
shorts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ShortType, ShortAccess> using a ShortAccess passed as argument.
shorts(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
shorts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
shorts(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
shorts(ShortLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<ShortType, ShortArray> reusing a passed short[] array.
ShortType - Class in net.imglib2.type.numeric.integer
TODO
ShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.ShortType
 
ShortType(short) - Constructor for class net.imglib2.type.numeric.integer.ShortType
 
ShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.ShortType
 
ShortType() - Constructor for class net.imglib2.type.numeric.integer.ShortType
 
ShortUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
ShortUnsafe(long) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
ShortUnsafe(long, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
ShortUnsafe(long, Object) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
ShortUnsafe(long, Object, boolean) - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.ShortUnsafe
 
show(RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Display and return a single channel ImagePlus, wrapping a RandomAccessibleInterval.
show(RandomAccessibleInterval<T>) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
show(RandomAccessibleInterval<T>, Converter<T, FloatType>, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Displays a complex type as power spectrum, phase spectrum, real values or imaginary values depending on the converter
show(RandomAccessibleInterval<T>, Converter<T, FloatType>) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
show(RandomAccessibleInterval<T>, Converter<T, FloatType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Displays a complex type as power spectrum, phase spectrum, real values or imaginary values depending on the converter
show(RandomAccessibleInterval<T>, Converter<T, FloatType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
show(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
show(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showFloat(RandomAccessibleInterval<T>, Converter<T, FloatType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval as single channel 32-bit float ImagePlus using a custom Converter.
showFloat(RandomAccessibleInterval<T>, Converter<T, FloatType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showFloat(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval of RealType pixels as single channel 32-bit float using a default Converter.
showFloat(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showFloat(RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval of RealType pixels as single channel 32-bit float using a default Converter.
showFloat(RandomAccessibleInterval<T>) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showRGB(RandomAccessibleInterval<T>, Converter<T, ARGBType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval as 24bit RGB ImagePlus using a custom Converter.
showRGB(RandomAccessibleInterval<T>, Converter<T, ARGBType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showUnsignedByte(RandomAccessibleInterval<T>, Converter<T, UnsignedByteType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval as single channel 8-bit unsigned integer ImagePlus using a custom Converter.
showUnsignedByte(RandomAccessibleInterval<T>, Converter<T, UnsignedByteType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showUnsignedByte(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval of RealType pixels as single channel 8-bit unsigned integer ImagePlus using a default Converter (clamp values to range [0, 255]).
showUnsignedByte(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showUnsignedByte(RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval of RealType pixels as single channel 8-bit unsigned integer ImagePlus using a default Converter.
showUnsignedByte(RandomAccessibleInterval<T>) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showUnsignedShort(RandomAccessibleInterval<T>, Converter<T, UnsignedShortType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval as single channel 16-bit unsigned integer ImagePlus using a custom Converter.
showUnsignedShort(RandomAccessibleInterval<T>, Converter<T, UnsignedShortType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showUnsignedShort(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval of RealType pixels as single channel 16-bit unsigned integer ImagePlus using a default Converter.
showUnsignedShort(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
showUnsignedShort(RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Show a RandomAccessibleInterval of RealType pixels as single channel 16-bit unsigned integer ImagePlus using a default Converter.
showUnsignedShort(RandomAccessibleInterval<T>) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
shrink(RandomAccessibleInterval<T>, long[]) - Static method in class net.imglib2.algorithm.localextrema.LocalExtrema
Shrink a RandomAccessibleInterval symmetrically, i.e.
shutdown() - Method in class net.imglib2.cache.img.DiskCachedCellImg
Shutdown the internal IoSync to free resources via IoSync.shutdown().
shutdown() - Method in class net.imglib2.cache.IoSync
Shutdown all internal Writer instances to free resources.
shutdown() - Method in class net.imglib2.cache.queue.FetcherThreads
 
shutdown() - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
shutdown() - Method in class net.imglib2.parallel.SequentialExecutorService
 
shutdownNow() - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
shutdownNow() - Method in class net.imglib2.parallel.SequentialExecutorService
 
sideLength(int) - Method in class net.imglib2.roi.geom.real.AbstractWritableBox
 
sideLength(int) - Method in interface net.imglib2.roi.geom.real.Box
Returns side length of Box in dimension d.
sigmaLarger - Variable in class net.imglib2.algorithm.dog.DogDetection
 
sigmaSmaller - Variable in class net.imglib2.algorithm.dog.DogDetection
 
SignedByteDataBuffer - Class in net.imglib2.display.awt
DataBuffer that stores signed bytes.
SignedByteDataBuffer(byte[], int) - Constructor for class net.imglib2.display.awt.SignedByteDataBuffer
Construct a new buffer of signed bytes using the given byte array.
SignedByteDataBuffer(byte[][], int) - Constructor for class net.imglib2.display.awt.SignedByteDataBuffer
Construct a new buffer of signed bytes using the given 2D byte array.
SignedShortDataBuffer - Class in net.imglib2.display.awt
DataBuffer that stores signed shorts.
SignedShortDataBuffer(int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(int, int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(short[], int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(short[], int, int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(short[][], int) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
SignedShortDataBuffer(short[][], int, int[]) - Constructor for class net.imglib2.display.awt.SignedShortDataBuffer
 
signs - Variable in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
signsArray(RandomAccessible<?>) - Static method in class net.imglib2.algorithm.math.BlockReadSource
 
SimpleMultiThreading - Class in net.imglib2.multithreading
Deprecated.
SimpleMultiThreading() - Constructor for class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
simplify(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews
Simplifies all RealTransforms which are wrapped in the source RealRandomAccessible.
simplify(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils
simplifyReal(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews
Simplifies all RealTransforms which are wrapped in the source RealRandomAccessible.
simplifyReal(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils
simplifyRealTransform(RealTransform) - Static method in class net.imglib2.realtransform.RealViewsSimplifyUtils
 
simplifyTransforms() - Method in class net.imglib2.view.TransformBuilder
Simplify the TransformBuilder.transforms list.
SingleCellArrayImg<T extends NativeType<T>,A extends ArrayDataAccess<A>> - Class in net.imglib2.cache.img
A NativeImg representing a single cell of an AbstractCellImg.
SingleCellArrayImg(int) - Constructor for class net.imglib2.cache.img.SingleCellArrayImg
 
SingleCellArrayImg(int[], long[], A, Dirty) - Constructor for class net.imglib2.cache.img.SingleCellArrayImg
 
SingleDimensionPermutationTransform - Class in net.imglib2.transform.integer.permutation
 
SingleDimensionPermutationTransform(int[], int, int, int) - Constructor for class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
singleThreaded() - Static method in class net.imglib2.parallel.TaskExecutors
TaskExecutor for single threaded execution.
Singleton - Class in net.imglib2.algorithm.util
Manage named singleton instances.
Singleton.ThrowingSupplier<T,E extends Exception> - Interface in net.imglib2.algorithm.util
 
SixCursorLoop(LoopBuilder.SixConsumer<A, B, C, D, E, F>, Cursor<A>, Cursor<B>, Cursor<C>, Cursor<D>, Cursor<E>, Cursor<F>) - Constructor for class net.imglib2.loops.FastCursorLoops.SixCursorLoop
 
size() - Method in interface net.imglib2.algorithm.componenttree.Component
Get the number of pixels in the connected component.
size() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
Get the number of pixels in the extremal region.
size() - Method in class net.imglib2.algorithm.componenttree.mser.MserTree
Get number of detected MSERs.
size() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
Get the size of the list.
size() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponent
Get the number of pixels in the extremal region.
size() - Method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
 
size - Variable in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
size() - Method in class net.imglib2.algorithm.math.execution.IterableRandomAccessibleFunction
 
size() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
size() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsIterableInterval
 
size() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
size() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsIterableInterval
 
size() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
size() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsIterableInterval
 
size() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
size() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsIterableInterval
 
size() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
size() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsIterableInterval
 
size() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
size() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsIterableInterval
 
size() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
size() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
size() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsIterableInterval
 
size() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
size() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
size() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
size() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
size() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
size() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
size() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
size - Variable in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
size() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
 
size() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayRankedUnionFind
 
size() - Method in class net.imglib2.algorithm.util.unionfind.IntArrayUnionFind
 
size() - Method in class net.imglib2.algorithm.util.unionfind.LongHashMapUnionFind
 
size() - Method in interface net.imglib2.algorithm.util.unionfind.UnionFind
 
size() - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
size() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
size() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
size() - Method in class net.imglib2.converter.AbstractConvertedIterableRealInterval
 
size() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
size() - Method in class net.imglib2.histogram.Histogram1d
 
size() - Method in class net.imglib2.histogram.HistogramNd
 
size() - Method in class net.imglib2.img.AbstractImg
 
size - Variable in class net.imglib2.img.array.AbstractArrayCursor
Size of this cursor
size - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
Size of this cursor.
size() - Method in class net.imglib2.img.cell.Cell
 
size() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
size - Variable in class net.imglib2.img.io.proxyaccess.AbstractAccessProxy
 
size - Variable in class net.imglib2.img.unsafe.AbstractUnsafeCursor
Size of this cursor
size - Variable in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
Size of this cursor.
size - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
size() - Method in interface net.imglib2.IterableRealInterval
Returns the number of elements in this Function.
size - Variable in class net.imglib2.KDTree
the number of nodes in the tree.
size() - Method in class net.imglib2.KDTree
 
size - Variable in class net.imglib2.labeling.AbstractLabeling
Deprecated.
 
size() - Method in class net.imglib2.labeling.AbstractLabeling
Deprecated.
 
size() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
size() - Method in class net.imglib2.PointSampleList
 
size() - Method in class net.imglib2.RealPointSampleList
 
size() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
size() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
Return the # of elements available from a cursor over the ROI.
size() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
size() - Method in class net.imglib2.roi.boundary.Boundary
 
size() - Method in class net.imglib2.roi.geom.integer.IterableLine
 
size() - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
 
size() - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
size() - Method in interface net.imglib2.roi.geom.real.RealPointCollection
Returns the number of points in the collection.
size() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
size() - Method in class net.imglib2.roi.labeling.LabelingMapping.InternedSet
 
size() - Method in class net.imglib2.roi.labeling.LabelingType
 
size() - Method in class net.imglib2.roi.labeling.LabelRegion
 
size() - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
size() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
Deprecated.
 
size() - Method in class net.imglib2.roi.util.IterableRegionOnBooleanRAI
 
size() - Method in class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
size() - Method in class net.imglib2.roi.util.SamplingIterableInterval
 
size() - Method in class net.imglib2.view.IntervalView
 
size() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
sliceAccess - Variable in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
sliceAccess2 - Variable in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
sliceAccesses - Variable in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
sliceIndex - Variable in class net.imglib2.img.planar.PlanarCursor
 
sliceIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
sliceIndex - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
sliceIndex - Variable in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
slices - Variable in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
sliceSteps - Variable in class net.imglib2.img.planar.PlanarImg
 
sliceSteps - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
Slicing - Interface in net.imglib2.transform.integer
TODO
SlicingCursor<T> - Class in net.imglib2.view.iteration
Wrap a cursor that runs on a hyperslice and apply coordinate transform on localize calls.
SlicingCursor(SlicingCursor<T>) - Constructor for class net.imglib2.view.iteration.SlicingCursor
 
SlicingRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a Slicing transformToSource.
SlicingRandomAccess(SlicingRandomAccess<T>) - Constructor for class net.imglib2.view.SlicingRandomAccess
 
SlicingTransform - Class in net.imglib2.transform.integer
Map the components of the source vector to a slice of the target space, for instance transform (x,y) to (x,C,y) where C is a constant.
SlicingTransform(int, int) - Constructor for class net.imglib2.transform.integer.SlicingTransform
 
SmallestContainingInterval(RealInterval) - Constructor for class net.imglib2.roi.Bounds.SmallestContainingInterval
 
smallestContainingInterval(RealInterval) - Static method in class net.imglib2.util.Intervals
Compute the smallest Interval containing the specified RealInterval.
SoftRefLoaderCache<K,V> - Class in net.imglib2.cache.ref
 
SoftRefLoaderCache() - Constructor for class net.imglib2.cache.ref.SoftRefLoaderCache
 
SoftRefLoaderRemoverCache<K,V,D> - Class in net.imglib2.cache.ref
TODO: Consider periodically calling SoftRefLoaderRemoverCache.cleanUp() from a background thread.
SoftRefLoaderRemoverCache() - Constructor for class net.imglib2.cache.ref.SoftRefLoaderRemoverCache
 
solve(double[][], double[], double[], FitFunction, double, double, int) - Static method in class net.imglib2.algorithm.localization.LevenbergMarquardtSolver
Minimize E = sum {(y[k] - f(x[k],a)) }^2 Note that function implements the value and gradient of f(x,a), NOT the value and gradient of E with respect to a!
sortDicom(String[], String[], int) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
source - Variable in class net.imglib2.AbstractWrappedLocalizable
 
source(RandomAccessible<T>) - Static method in class net.imglib2.algorithm.math.ImgMath
 
source - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
source - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
source - Variable in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
source - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
source - Variable in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
source - Variable in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
source - Variable in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
source - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
source - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
source - Variable in class net.imglib2.converter.AbstractConvertedCursor
 
source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccess
 
source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccessible
 
source - Variable in class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
source - Variable in class net.imglib2.converter.AbstractConvertedRealCursor
 
source - Variable in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
source - Variable in class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
source - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
source - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
 
source - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
source - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
source - Variable in class net.imglib2.interpolation.Interpolant
 
source - Variable in class net.imglib2.realtransform.RealTransformRealRandomAccessible
 
source - Variable in class net.imglib2.realtransform.StackingRealRandomAccessible
 
source - Variable in class net.imglib2.roi.util.OffsetLocalizable
 
source - Variable in class net.imglib2.roi.util.PositionableWrappedIterableInterval
 
source - Variable in class net.imglib2.view.composite.CompositeView
 
source - Variable in class net.imglib2.view.ExtendedRandomAccessibleInterval
 
source - Variable in class net.imglib2.view.ExtendedRealRandomAccessibleRealInterval
 
source - Variable in class net.imglib2.view.HyperSlice
 
source - Variable in class net.imglib2.view.HyperSlicesView
 
source - Variable in class net.imglib2.view.IntervalView
The source RandomAccessible.
source - Variable in class net.imglib2.view.MixedTransformView
 
source - Variable in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible
 
source - Variable in class net.imglib2.view.SubsampleView
 
source - Variable in class net.imglib2.view.TransformBuilder
Provides the untransformed random access.
source - Variable in class net.imglib2.view.TransformView
 
sourceA - Variable in class net.imglib2.view.RandomAccessiblePair
 
sourceAccess - Variable in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
sourceAccess - Variable in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
sourceAccess - Variable in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
sourceAccess - Variable in class net.imglib2.view.composite.AbstractComposite
 
sourceAccess - Variable in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
sourceAccess - Variable in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
sourceAccess - Variable in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
sourceB - Variable in class net.imglib2.converter.read.BiConvertedCursor
 
sourceB - Variable in class net.imglib2.converter.read.BiConvertedRandomAccess
 
sourceB - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessible
 
sourceB - Variable in class net.imglib2.converter.read.BiConvertedRealCursor
 
sourceB - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccess
 
sourceB - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessible
 
sourceB - Variable in class net.imglib2.view.RandomAccessiblePair
 
sourceInterval - Variable in class net.imglib2.AbstractWrappedRealInterval
 
SourceInterval - Interface in net.imglib2.algorithm.math.abstractions
 
sourceInterval - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
sourceInterval - Variable in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
sourceInterval - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
sourceInterval - Variable in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
sourceInterval - Variable in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
sourceInterval - Variable in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
sourceInterval - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
sourceIntervalB - Variable in class net.imglib2.converter.read.BiConvertedIterableInterval
 
sourceIntervalB - Variable in class net.imglib2.converter.read.BiConvertedIterableRealInterval
 
sourceIntervalB - Variable in class net.imglib2.converter.read.BiConvertedRandomAccessibleInterval
 
sourceIntervalB - Variable in class net.imglib2.converter.read.BiConvertedRealRandomAccessibleRealInterval
 
sourceNumDimensions - Variable in class net.imglib2.realtransform.StackingRealRandomAccessible
 
sourceRandomAccess - Variable in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
span - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
span - Variable in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
span - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
span - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
The span of this neighborhood, such that the size of the bounding box in dimension d will be 2 x span[d] + 1.
Sphere - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines an n-d sphere.
SphericalToCartesianTransform3D - Class in net.imglib2.realtransform
Transforms 3D spherical to cartesian coordinates.
split(HyperPlane) - Method in class net.imglib2.algorithm.kdtree.SplitHyperPlaneKDTree
 
split(double[]) - Method in class net.imglib2.algorithm.kdtree.SplitHyperPlaneKDTree
 
splitDimension - Variable in class net.imglib2.KDTreeNode
dimension along which this node divides the space.
SplitHyperPlaneKDTree<T> - Class in net.imglib2.algorithm.kdtree
Partition nodes in a KDTree into disjoint sets of nodes that are above and below a given hyperplane, respectively.
SplitHyperPlaneKDTree(KDTree<T>) - Constructor for class net.imglib2.algorithm.kdtree.SplitHyperPlaneKDTree
 
Spur - Class in net.imglib2.algorithm.morphology.table2d
Removes spur pixels, i.e., pixels that have exactly one 8-connected neighbor.
Spur() - Constructor for class net.imglib2.algorithm.morphology.table2d.Spur
 
spur(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Spur
 
spur(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Spur
 
SQRT3 - Static variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
square(int) - Static method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
square(int, int, boolean) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a centered square flat structuring element for morphological operations.
square(int, int) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a centered square flat structuring element for morphological operations.
square2D() - Static method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
squaredError(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
Compute the squared error between this estimate and the target.
squaredError(double[]) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
squaredErrorAt(double[]) - Method in class net.imglib2.realtransform.inverse.BacktrackingLineSearch
Compute the squared error between the destination of the input source point and the target.
squareDistance(RealLocalizable) - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
Calculate the square Euclidean distance of a query location to the location stored in referenceLocation.
squareDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
squareDistance(RealLocalizable) - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
Calculate the square Euclidean distance of a query location to the location stored in referenceLocation.
squareDistance(double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
get the squared length of (a - b).
squareDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
squareLength(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
get the squared length of a.
squDistanceTo(float[]) - Method in class net.imglib2.KDTreeNode
Compute the squared distance from p to this node.
squDistanceTo(double[]) - Method in class net.imglib2.KDTreeNode
Compute the squared distance from p to this node.
squDistanceTo(RealLocalizable) - Method in class net.imglib2.KDTreeNode
Compute the squared distance from p to this node.
src - Variable in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
stack(List<String>, CacheLoader<String, Img<T>>) - Static method in class net.imglib2.img.io.Load
Return an Img representation of the ordered list of file paths, with each file path pointing to an image that can be loaded with the CacheLoader.
stack(String[], CacheLoader<String, Img<T>>) - Static method in class net.imglib2.img.io.Load
 
stack(List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
stack(RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
stack(StackView.StackAccessMode, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
stack(StackView.StackAccessMode, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Form a (n+1)-dimensional RandomAccessibleInterval by stacking n-dimensional RandomAccessibleIntervals.
StackingRealRandomAccess() - Constructor for class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
StackingRealRandomAccessible<T> - Class in net.imglib2.realtransform
A RealRandomAccessible whose samples are generated by trivial projection of the lower dimensional source into a higher dimensional target by continuous stacking, i.e.
StackingRealRandomAccessible(RealRandomAccessible<T>, int) - Constructor for class net.imglib2.realtransform.StackingRealRandomAccessible
 
StackingRealRandomAccessible.StackingRealRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a lower dimensional source
StackView<T> - Class in net.imglib2.view
A stack of n-dimensional RandomAccessibleIntervals, forming a (n+1)-dimensional RandomAccessibleInterval.
StackView(List<? extends RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.view.StackView
 
StackView(List<? extends RandomAccessibleInterval<T>>, StackView.StackAccessMode) - Constructor for class net.imglib2.view.StackView
 
StackView.DefaultRA<T> - Class in net.imglib2.view
StackView.MoveAllSlicesRA<T> - Class in net.imglib2.view
StackView.StackAccessMode - Enum in net.imglib2.view
Describes how a RandomAccess on the (n+1)-dimensional StackView maps position changes into position changes of the underlying n-dimensional RandomAccesses.
StandardDiffusionScheme2D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
StandardDiffusionScheme2D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, float) - Constructor for class net.imglib2.algorithm.pde.StandardDiffusionScheme2D
 
StandardDiffusionScheme2D(Img<T>, Img<FloatType>) - Constructor for class net.imglib2.algorithm.pde.StandardDiffusionScheme2D
 
StandardDiffusionScheme3D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
StandardDiffusionScheme3D(Img<T>, Img<FloatType>) - Constructor for class net.imglib2.algorithm.pde.StandardDiffusionScheme3D
 
StandardDiffusionScheme3D(Img<T>, Img<FloatType>, float) - Constructor for class net.imglib2.algorithm.pde.StandardDiffusionScheme3D
 
StandardDiffusionScheme3D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>) - Constructor for class net.imglib2.algorithm.pde.StandardDiffusionScheme3D
 
StandardDiffusionScheme3D(RandomAccessibleInterval<T>, RandomAccessibleInterval<FloatType>, ImgFactory<FloatType>, float) - Constructor for class net.imglib2.algorithm.pde.StandardDiffusionScheme3D
 
start() - Method in class net.imglib2.cache.iotiming.IoStatistics
 
start(Thread[]) - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
start() - Method in class net.imglib2.util.StopWatch
Start the clock.
startAndJoin(Thread[]) - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
StartPointEstimator - Interface in net.imglib2.algorithm.localization
Interface for classes that are able to provide a start point for the parameters of a curve fitting problem on image data.
startPosition - Variable in class net.imglib2.multithreading.Chunk
Deprecated.
 
startTask(Runnable) - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
startTask(Runnable, int) - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
state - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
The state of the cursor.
statistics - Variable in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
step - Variable in class net.imglib2.img.list.AbstractListImg
 
step - Variable in class net.imglib2.img.list.AbstractLongListImg
 
step - Variable in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
steps - Variable in class net.imglib2.img.cell.Cell
 
steps - Variable in class net.imglib2.iterator.IntervalIterator
 
steps - Variable in class net.imglib2.view.SubsampleView
 
stop() - Method in class net.imglib2.cache.iotiming.IoStatistics
 
stop() - Method in class net.imglib2.util.StopWatch
Stop the clock.
StopWatch - Class in net.imglib2.util
Utility class to measure time differences in nano-seconds, based on System.nanoTime().
strategy - Variable in class net.imglib2.labeling.AbstractLabeling
Deprecated.
 
stride - Variable in class net.imglib2.img.basictypelongaccess.unsafe.AbstractStridedUnsafeLongAccess
 
Stripe(double, double) - Constructor for class net.imglib2.roi.PolygonRegionOfInterest.Stripe
Deprecated.
 
StrongEdgeEnhancer(double) - Constructor for class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion.StrongEdgeEnhancer
 
StructuringElements - Class in net.imglib2.algorithm.morphology
A collection of static utilities to facilitate the creation of morphological structuring elements.
StructuringElements() - Constructor for class net.imglib2.algorithm.morphology.StructuringElements
 
sub(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
sub(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Sub - Class in net.imglib2.algorithm.math
 
Sub(Object, Object) - Constructor for class net.imglib2.algorithm.math.Sub
 
Sub(Object...) - Constructor for class net.imglib2.algorithm.math.Sub
 
sub(BitType) - Method in class net.imglib2.type.logic.BitType
 
sub(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
sub(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
sub(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
sub(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
sub(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
sub(ComplexFloatLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
sub(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
sub(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
sub(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
sub(UnsignedByteLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
sub(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
sub(UnsignedIntLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
sub(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
sub(UnsignedLongLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
sub(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
sub(UnsignedShortLongAccessType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
sub(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
sub(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
sub(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
sub(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
Sub<T> - Interface in net.imglib2.type.operators
 
sub(T) - Method in interface net.imglib2.type.operators.Sub
 
sub(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
sub(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
sub(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
SubIntervalIterable<T> - Interface in net.imglib2.view.iteration
Implementing this interface enables the implementor to return optimized Cursors for certain Intervals
subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.array.ArrayImg
Returns the iteration order given the interval.
subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.ImgView
 
subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Returns the iteration order given the interval.
subIntervalIterationOrder(Interval) - Method in class net.imglib2.img.unsafe.UnsafeImg
Returns the iteration order given the interval.
subIntervalIterationOrder(Interval) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
subIntervalIterationOrder(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
subIntervalIterationOrder(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
 
subIntervalIterationOrder(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Returns the iteration order given the interval.
subList(int, int) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
submit(Runnable) - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
submit(Runnable, T) - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
submit(Callable<T>) - Method in class net.imglib2.parallel.ForkJoinExecutorService
 
SubpixelEdgelDetection - Class in net.imglib2.algorithm.edge
Compute the set of sub-pixel edgels for the input image.
SubpixelEdgelDetection() - Constructor for class net.imglib2.algorithm.edge.SubpixelEdgelDetection
 
SubpixelLocalization<P extends Localizable,T extends RealType<T>> - Class in net.imglib2.algorithm.localextrema
Refine a set of peaks to subpixel coordinates.
SubpixelLocalization(int) - Constructor for class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
subsample(RandomAccessibleInterval<T>, long) - Static method in class net.imglib2.view.Views
Sample only every stepth value of a source RandomAccessibleInterval.
subsample(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Sample only every stepdth value of a source RandomAccessibleInterval.
subsample(RandomAccessible<T>, long) - Static method in class net.imglib2.view.Views
Sample only every stepth value of a source RandomAccessible.
subsample(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
Sample only every stepdth value of a source RandomAccessible.
SubsampleIntervalView<T> - Class in net.imglib2.view
SubsampleIntervalView is a view that provides access to only every sdth value of a source RandomAccessibleInterval.
SubsampleIntervalView(RandomAccessibleInterval<T>, long) - Constructor for class net.imglib2.view.SubsampleIntervalView
 
SubsampleIntervalView(RandomAccessibleInterval<T>, long...) - Constructor for class net.imglib2.view.SubsampleIntervalView
 
SubsampleRandomAccess(RandomAccess<T>) - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
SubsampleRandomAccess() - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
SubsampleRandomAccess(Interval) - Constructor for class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
SubsampleView<T> - Class in net.imglib2.view
SubsampleView is a view that provides access to only every sdth value of a source RandomAccessible.
SubsampleView(RandomAccessible<T>, long) - Constructor for class net.imglib2.view.SubsampleView
 
SubsampleView(RandomAccessible<T>, long...) - Constructor for class net.imglib2.view.SubsampleView
 
SubsampleView.SubsampleRandomAccess - Class in net.imglib2.view
 
subtract(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = a - b.
subtractData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Uncounts some original data contained in a given iterable collection.
subtractData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Uncounts some original data contained in a given iterable collection.
subtractData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Uncounts some original data contained in a given iterable collection.
Subtraction<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Subtraction(O, OFunction<O>, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.Subtraction
 
SubtractNorm<A extends NumericType<A>> - Class in net.imglib2.algorithm.function
TODO
SubtractNorm(A) - Constructor for class net.imglib2.algorithm.function.SubtractNorm
 
SubtractNormReal<A extends RealType<A>,B extends RealType<B>,C extends RealType<C>> - Class in net.imglib2.algorithm.function
TODO
SubtractNormReal(double) - Constructor for class net.imglib2.algorithm.function.SubtractNormReal
 
SubtractReal<A extends RealType<A>,B extends RealType<B>,C extends RealType<C>> - Class in net.imglib2.algorithm.function
TODO
SubtractReal() - Constructor for class net.imglib2.algorithm.function.SubtractReal
 
suggestNumberOfTasks() - Method in class net.imglib2.parallel.DefaultTaskExecutor
 
suggestNumberOfTasks() - Method in interface net.imglib2.parallel.TaskExecutor
If there is a big task that could be split into sub tasks for parallelization, this method gives you a reasonable number of sub tasks.
sums - Variable in class net.imglib2.util.RealSum
 
sumSquaredErrors(double[], double[]) - Static method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
SuperEllipsoid - Interface in net.imglib2.roi.geom.real
A RealMaskRealInterval which defines an n-d superellipsoid.
supplyTo(PhysicalStore<Double>) - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
Determine whether a Cursor can be created that iterates the given Interval.
supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.ImgView
 
supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Determine whether a Cursor can be created that iterates the given Interval.
supportsOptimizedCursor(Interval) - Method in class net.imglib2.img.unsafe.UnsafeImg
Determine whether a Cursor can be created that iterates the given Interval.
supportsOptimizedCursor(Interval) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
supportsOptimizedCursor(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
supportsOptimizedCursor(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
 
supportsOptimizedCursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Determine whether a Cursor can be created that iterates the given Interval.
switchRealComplex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
switchRealComplex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
symmetric(double...) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Creates a one-dimensional symmetric convolution kernel.
symmetric(double[][]) - Static method in class net.imglib2.algorithm.convolution.kernel.Kernel1D
Similar to Kernel1D.symmetric(double[]) but creates an array of one-dimensional convolution kernels.
symmetric(int) - Static method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
symmetric2D() - Static method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
SyncedPositionables - Class in net.imglib2.loops
Helper for the implementation of LoopBuilder.

T

t - Variable in class net.imglib2.realtransform.AbstractAffineTransform
 
t - Variable in class net.imglib2.realtransform.AbstractTranslation
 
t - Variable in class net.imglib2.Volatile
 
take() - Method in class net.imglib2.cache.queue.BlockingFetchQueues
Remove and return an element from the highest priority non-empty queue.
target - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
target - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
 
target - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
target - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
target - Variable in class net.imglib2.position.transform.AbstractPositionableTransform
 
target - Variable in class net.imglib2.roi.util.SamplingCursor
 
TaskExecutor - Interface in net.imglib2.parallel
TaskExecutor is recommended to be used in image processing algorithms instead of ExecutorService.
TaskExecutors - Class in net.imglib2.parallel
Utility class, with methods to create TaskExecutors.
tempDirectory(Path) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions
Set the path to the directory in which to create the temporary cell cache directory.
tempDirectory() - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
tempDirectoryPrefix(String) - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions
Set the prefix string to be used in generating the name of the temporary cell cache directory.
tempDirectoryPrefix() - Method in interface net.imglib2.cache.img.optional.DiskCacheOptions.Val
 
tensorComponentDimension - Variable in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
The dimension to iterate over to retrieve the tensor components.
TensorEigenValues - Class in net.imglib2.algorithm.linalg.eigen
 
TensorEigenValues() - Constructor for class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
test(Localizable) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMask
 
test(Localizable) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeMaskInterval
 
test(RealLocalizable) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMask
 
test(RealLocalizable) - Method in class net.imglib2.roi.composite.DefaultBinaryCompositeRealMaskRealInterval
 
test(Localizable) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMask
 
test(Localizable) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeMaskInterval
 
test(RealLocalizable) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMask
 
test(RealLocalizable) - Method in class net.imglib2.roi.composite.DefaultUnaryCompositeRealMaskRealInterval
 
test(RealLocalizable) - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMask
 
test(RealLocalizable) - Method in class net.imglib2.roi.composite.RealTransformUnaryCompositeRealMaskRealInterval
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritableBox
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritableEllipsoid
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritablePolygon2D
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritableSphere
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.ClosedWritableSuperEllipsoid
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritableLine
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePointMask
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
Return true if the given point is contained inside the boundary.
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.DefaultWritableRealPointCollection
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.NNSRealPointCollection
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritableBox
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritableEllipsoid
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritablePolygon2D
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritableSphere
 
test(RealLocalizable) - Method in class net.imglib2.roi.geom.real.OpenWritableSuperEllipsoid
 
test(Localizable) - Method in class net.imglib2.roi.mask.integer.DefaultMask
 
test(Localizable) - Method in class net.imglib2.roi.mask.integer.DefaultMaskInterval
 
test(Localizable) - Method in class net.imglib2.roi.mask.integer.RandomAccessibleAsMask
 
test(Localizable) - Method in class net.imglib2.roi.mask.integer.RandomAccessibleIntervalAsMaskInterval
 
test(RealLocalizable) - Method in class net.imglib2.roi.mask.real.DefaultRealMask
 
test(RealLocalizable) - Method in class net.imglib2.roi.mask.real.DefaultRealMaskRealInterval
 
test(RealLocalizable) - Method in class net.imglib2.roi.mask.real.RealRandomAccessibleAsRealMask
 
test(RealLocalizable) - Method in class net.imglib2.roi.mask.real.RealRandomAccessibleRealIntervalAsRealMaskRealInterval
 
THEN(Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Then - Class in net.imglib2.algorithm.math
A class that exists merely for coding readability.
Then(Object) - Constructor for class net.imglib2.algorithm.math.Then
 
Thicken - Class in net.imglib2.algorithm.morphology.table2d
Dilates the exteriors of objects where that dilation does not 8-connect the object with another.
Thicken() - Constructor for class net.imglib2.algorithm.morphology.table2d.Thicken
 
thicken(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Thicken
 
thicken(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Thicken
 
Thin - Class in net.imglib2.algorithm.morphology.table2d
Thin lines preserving the Euler number using the thinning algorithm # 1 described in Guo, "Parallel Thinning with Two Subiteration Algorithms", Communications of the ACM, Vol 32 #3, page 359.
Thin() - Constructor for class net.imglib2.algorithm.morphology.table2d.Thin
 
thin(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Thin
 
thin(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Thin
 
Thin1 - Class in net.imglib2.algorithm.morphology.table2d
Helper class for Thin.
Thin1() - Constructor for class net.imglib2.algorithm.morphology.table2d.Thin1
 
thin1(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Thin1
 
thin1(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Thin1
 
Thin2 - Class in net.imglib2.algorithm.morphology.table2d
Helper class for Thin.
Thin2() - Constructor for class net.imglib2.algorithm.morphology.table2d.Thin2
 
thin2(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Thin2
 
thin2(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Thin2
 
ThinplateSplineTransform - Class in net.imglib2.realtransform
An n-dimensional thin plate spline transform backed by John Bogovic's jitk-tps library.
ThinplateSplineTransform(ThinPlateR2LogRSplineKernelTransform) - Constructor for class net.imglib2.realtransform.ThinplateSplineTransform
 
ThinplateSplineTransform(double[][], double[][]) - Constructor for class net.imglib2.realtransform.ThinplateSplineTransform
 
threadFactory(Supplier<TaskExecutor>) - Static method in class net.imglib2.parallel.TaskExecutors
Returns a ThreadFactory.
threadHaltUnClean() - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
threadWait(long) - Static method in class net.imglib2.multithreading.SimpleMultiThreading
Deprecated.
 
ThreeCursorLoop(LoopBuilder.TriConsumer<A, B, C>, Cursor<A>, Cursor<B>, Cursor<C>) - Constructor for class net.imglib2.loops.FastCursorLoops.ThreeCursorLoop
 
threshold(Img<T>, T, boolean, int) - Static method in class net.imglib2.algorithm.binary.Thresholder
Returns a new boolean Img generated by thresholding the values of the source image.
Thresholder - Class in net.imglib2.algorithm.binary
Collection of static utilities meant to generate BitType images from Comparable images.
Thresholder() - Constructor for class net.imglib2.algorithm.binary.Thresholder
 
timeLeft(int) - Method in class net.imglib2.cache.iotiming.IoTimeBudget
Returns how much time is left for the specified priority level.
tmp - Variable in class net.imglib2.algorithm.math.execution.BlockReadingSource
 
tmp - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
tmp - Variable in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
required because (a - b) in (a - b) * w + b cannot become negative value in unsigned types and NumericType is not Comparable so we cannot have decide which of the two options (a - b) * w + b or (b - a) * w1 + a could work
tmp - Variable in class net.imglib2.realtransform.AbstractAffineTransform
 
tmp - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence
 
tmp - Variable in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
tmpCoefStorage - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
toARGBInt() - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
Create and integer packed representation of this ARGB value.
toArray() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
toArray(T[]) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
toArray(double[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
toArray(double[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
toArray() - Method in class net.imglib2.roi.labeling.LabelingType
 
toArray(T1[]) - Method in class net.imglib2.roi.labeling.LabelingType
 
toDouble(double, Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
toDouble(double[], Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
toDouble(double, Img<T>, OutOfBoundsFactory<DoubleType, RandomAccessibleInterval<DoubleType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img
toDouble(double[], Img<T>, OutOfBoundsFactory<DoubleType, RandomAccessibleInterval<DoubleType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with double precision on an entire Img
toFloat(double, Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
toFloat(double[], Img<T>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img using the OutOfBoundsMirrorFactory with single boundary
toFloat(double, Img<T>, OutOfBoundsFactory<FloatType, RandomAccessibleInterval<FloatType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img
toFloat(double[], Img<T>, OutOfBoundsFactory<FloatType, RandomAccessibleInterval<FloatType>>) - Static method in class net.imglib2.algorithm.gauss.Gauss
Deprecated.
Computes a Gaussian convolution with float precision on an entire Img
toFloat(Img<T>, double, PeronaMalikAnisotropicDiffusion.DiffusionFunction) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
toFloat(Img<T>, double, double) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
toFloat(RandomAccessibleInterval<T>, ImgFactory<FloatType>, double, PeronaMalikAnisotropicDiffusion.DiffusionFunction) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
toFloat(RandomAccessibleInterval<T>, ImgFactory<FloatType>, double, double) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
toIterableRegion(RealMaskRealInterval) - Static method in class net.imglib2.roi.Masks
View a RealMaskRealInterval as an IterableRegion, in integer coordinates.
toIterableRegion(MaskInterval) - Static method in class net.imglib2.roi.Masks
View a MaskInterval as an IterableRegion, in integer coordinates.
tolerance - Variable in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
toLongArray() - Method in class net.imglib2.histogram.Histogram1d
Returns a bare long[] histogram with the same bin counts as this histogram.
toMask(RandomAccessible<B>) - Static method in class net.imglib2.roi.Masks
Wraps the given RandomAccessible as a Mask.
toMaskInterval(RandomAccessibleInterval<B>) - Static method in class net.imglib2.roi.Masks
toMatrix(double[][]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
toMatrix(double[][]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
TopHat - Class in net.imglib2.algorithm.morphology
White top-hat transform for ImgLib2.
topHat(Img<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
topHat(Img<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation, using a list of Shapes as a flat structuring element.
topHat(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.
topHat(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation, using a Shape as a flat structuring element.
topHat(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
topHat(RandomAccessible<T>, IterableInterval<T>, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
topHat(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
topHat(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
topHatInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
topHatInPlace(RandomAccessible<T>, Interval, List<? extends Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation, using a list of Shapes as a flat structuring element.
topHatInPlace(RandomAccessible<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.
topHatInPlace(RandomAccessible<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.TopHat
Performs the top-hat (white top-hat) morphological operation, using a Shape as a flat structuring element.
toRandomAccessible(Mask) - Static method in class net.imglib2.roi.Masks
Wraps the given Mask as a RandomAccessible of BoolType.
toRandomAccessibleInterval(MaskInterval) - Static method in class net.imglib2.roi.Masks
toRealMask(RealRandomAccessible<B>) - Static method in class net.imglib2.roi.Masks
Wraps the given RealRandomAccessible as a RealMask.
toRealMaskRealInterval(RealRandomAccessibleRealInterval<B>) - Static method in class net.imglib2.roi.Masks
toRealRandomAccessible(RealMask) - Static method in class net.imglib2.roi.Masks
Wraps the given RealMask as a RealRandomAccessible of BoolType.
toRealRandomAccessibleRealInterval(RealMaskRealInterval) - Static method in class net.imglib2.roi.Masks
toString() - Method in class net.imglib2.AbstractCursor
 
toString() - Method in class net.imglib2.AbstractCursorInt
 
toString() - Method in class net.imglib2.AbstractInterval
 
toString() - Method in class net.imglib2.AbstractRealInterval
 
toString() - Method in class net.imglib2.algorithm.bspline.BSplineDecomposition
 
toString() - Method in class net.imglib2.algorithm.edge.Edgel
 
toString() - Method in class net.imglib2.algorithm.localization.DummySolver
 
toString() - Method in class net.imglib2.algorithm.localization.EllipticGaussianOrtho
 
toString() - Method in class net.imglib2.algorithm.localization.Gaussian
 
toString() - Method in class net.imglib2.algorithm.localization.LevenbergMarquardtSolver
 
toString() - Method in class net.imglib2.algorithm.localization.MLEllipticGaussianEstimator
 
toString() - Method in class net.imglib2.algorithm.localization.MLGaussianEstimator
 
toString() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
toString() - Method in class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
 
toString() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape
 
toString() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape
 
toString() - Method in class net.imglib2.algorithm.neighborhood.GeneralRectangleShape
 
toString() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape
 
toString() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape
 
toString() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape
 
toString() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape
 
toString() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape
 
toString() - Method in class net.imglib2.algorithm.region.EllipseCursor
 
toString() - Method in class net.imglib2.cache.volatiles.CacheHints
 
toString() - Method in class net.imglib2.FinalDimensions
 
toString() - Method in class net.imglib2.img.AbstractImg
 
toString() - Method in class net.imglib2.img.array.AbstractArrayCursor
 
toString() - Method in class net.imglib2.img.cell.CellCursor
 
toString() - Method in class net.imglib2.img.cell.CellGrid
 
toString() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
toString() - Method in class net.imglib2.img.planar.PlanarCursor
 
toString() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
toString() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
toString() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
toString() - Method in class net.imglib2.img.unsafe.AbstractUnsafeCursor
 
toString() - Method in class net.imglib2.iterator.IntervalIterator
 
toString() - Method in class net.imglib2.KDTree.SamplerNode
 
toString(KDTreeNode<T>, String) - Method in class net.imglib2.KDTree
 
toString() - Method in class net.imglib2.KDTree
 
toString() - Method in class net.imglib2.KDTree.ValueNode
 
toString() - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
toString() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
toString() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
toString() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
toString() - Method in class net.imglib2.Point
 
toString() - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
toString() - Method in class net.imglib2.RealPoint
 
toString() - Method in class net.imglib2.realtransform.AffineTransform2D
 
toString() - Method in class net.imglib2.realtransform.AffineTransform3D
 
toString() - Method in class net.imglib2.realtransform.HomographyTransform2D
 
toString() - Method in class net.imglib2.roi.labeling.LabelingType
 
toString() - Method in class net.imglib2.roi.PolygonRegionOfInterest.Stripe
Deprecated.
 
toString() - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
toString() - Method in class net.imglib2.roi.util.PositionableInterval
 
toString() - Method in class net.imglib2.type.AbstractNativeType
 
toString() - Method in class net.imglib2.type.label.BasePairBitType
 
toString() - Method in class net.imglib2.type.label.BasePairCharType
 
toString() - Method in class net.imglib2.type.logic.BitType
 
toString() - Method in class net.imglib2.type.logic.NativeBoolType
 
toString() - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.ARGBType
 
toString() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
toString() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
toString() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
toString() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
toString() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
toString() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
toString(Interval) - Static method in class net.imglib2.util.Intervals
Returns a string that contains min, max and the dimensions of the Interval.
toString(RealInterval) - Static method in class net.imglib2.util.Intervals
Returns a string that contains min and max of the RealInterval.
toString(Dimensions) - Static method in class net.imglib2.util.Intervals
Converts the Dimensions into a string.
toString(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
 
toString(double[][], String) - Static method in class net.imglib2.util.LinAlgHelpers
 
toString(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
 
toString(double[], String) - Static method in class net.imglib2.util.LinAlgHelpers
 
toString(Localizable) - Static method in class net.imglib2.util.Localizables
Return the current position as string.
toString(RealLocalizable) - Static method in class net.imglib2.util.Localizables
Return the current position as string.
toString() - Method in class net.imglib2.util.StopWatch
Get the total time the clock was running as string.
toString() - Method in class net.imglib2.view.MixedTransformView
 
totalCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the total count of all values observed; both within and without the entire distribution.
totalCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the total count of all values observed; both within and without the entire distribution.
totalValues() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Returns the total number of values counted by this distribution.
transform(ConvexPolytope, AffineGet) - Static method in class net.imglib2.algorithm.kdtree.ConvexPolytope
transform(HyperPlane, AffineGet) - Static method in class net.imglib2.algorithm.kdtree.HyperPlane
transform(RandomAccessibleInterval<T>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using squared Euclidian (L2) or L1 distance.
transform(RandomAccessibleInterval<T>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using squared Euclidian (L2) or L1 distance.
transform(RandomAccessible<T>, RandomAccessibleInterval<U>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using squared Euclidian (L2) or L1 distance.
transform(RandomAccessible<T>, RandomAccessibleInterval<U>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using squared Euclidian (L2) or L1 distance.
transform(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, DistanceTransform.DISTANCE_TYPE, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using squared Euclidian (L2) or L1 distance.
transform(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, DistanceTransform.DISTANCE_TYPE, ExecutorService, int, double...) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using squared Euclidian (L2) or L1 distance.
transform(RandomAccessibleInterval<T>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using arbitrary Distance d.
transform(RandomAccessibleInterval<T>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using arbitrary Distance d.
transform(RandomAccessible<T>, RandomAccessibleInterval<U>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using arbitrary Distance d.
transform(RandomAccessible<T>, RandomAccessibleInterval<U>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using arbitrary Distance d.
transform(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, Distance) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using arbitrary Distance d.
transform(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<V>, Distance, ExecutorService, int) - Static method in class net.imglib2.algorithm.morphology.distance.DistanceTransform
Create distance transforms of sampled functions on source using arbitrary Distance d.
transform - Variable in class net.imglib2.realtransform.inverse.RealTransformFiniteDerivatives
 
transform(RealRandomAccessible<T>, InvertibleRealTransform) - Static method in class net.imglib2.realtransform.RealViews
transform(Transform) - Method in interface net.imglib2.roi.Mask
 
transform(RealTransform) - Method in interface net.imglib2.roi.RealMask
 
transform(AffineGet) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
transform(BoundingBox) - Method in class net.imglib2.transform.integer.AbstractMixedTransform
 
transform(BoundingBox) - Method in interface net.imglib2.transform.integer.BoundingBoxTransform
Return a transformed bounding box.
transform(BoundingBox) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
transform(BoundingBox) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
Transform - Interface in net.imglib2.transform
Transformation from Zn to Zm.
transform(T) - Method in interface net.imglib2.transform.Transformable
Generate a copy of the object in the transformed space.
Transformable<O,T extends Transform> - Interface in net.imglib2.transform
A class is transformable if it can produce a copy of itself in the transformed space using the supplied transform.
TransformBuilder<T> - Class in net.imglib2.view
The "brain" of the Views framework.
TransformBuilder(Interval, RandomAccessible<T>) - Constructor for class net.imglib2.view.TransformBuilder
Create a new TransformBuilder.
transformCopy - Variable in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
transformCopy - Variable in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
TransformedRandomAccessible<T> - Interface in net.imglib2.view
A view of a RandomAccessible which is related by a coordinate Transform to its source.
TransformRandomAccess<T> - Class in net.imglib2.view
Wrap a source RandomAccess which is related to this by a generic Transform transformToSource.
TransformRandomAccess(TransformRandomAccess<T>) - Constructor for class net.imglib2.view.TransformRandomAccess
 
transformReal(RealRandomAccessible<T>, InvertibleRealTransform) - Static method in class net.imglib2.realtransform.RealViews
See a RealRandomAccessible as transformed by an InvertibleRealTransform.
transforms - Variable in class net.imglib2.realtransform.AbstractRealTransformSequence
 
transforms - Variable in class net.imglib2.view.TransformBuilder
List of transforms that have to be applied when wrapping the TransformBuilder.source RandomAccess to obtain a RandomAccess in the target coordinate system.
transformToSource - Variable in class net.imglib2.realtransform.RealTransformRealRandomAccessible
 
transformToSource - Variable in class net.imglib2.view.MixedTransformView
 
transformToSource - Variable in class net.imglib2.view.TransformView
 
TransformView<T> - Class in net.imglib2.view
Wrap a source RandomAccessible which is related to this by a generic Transform transformToSource.
TransformView(RandomAccessible<T>, Transform) - Constructor for class net.imglib2.view.TransformView
 
translate(double...) - Method in class net.imglib2.realtransform.AffineTransform2D
Translate
translate(double...) - Method in class net.imglib2.realtransform.AffineTransform3D
Translation
translate(Interval, long, int) - Static method in class net.imglib2.util.Intervals
Translate an interval in one dimension.
translate(Interval, long...) - Static method in class net.imglib2.util.Intervals
Translate an interval.
translate(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
Translate the source view by the given translation vector.
translate(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Translate the source view by the given translation vector.
translate(long...) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.translate(RandomAccessible, long...).
translateInverse(Interval, long...) - Static method in class net.imglib2.util.Intervals
Translate an interval by -translation.
translateInverse(RandomAccessible<T>, long...) - Static method in class net.imglib2.view.Views
Translate the source view by the given inverse translation vector.
translateInverse(RandomAccessibleInterval<T>, long...) - Static method in class net.imglib2.view.Views
Translate the source view by the given inverse translation vector.
translateInverse(long...) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.translateInverse(RandomAccessible, long...).
Translation - Class in net.imglib2.realtransform
 
Translation(double[], Translation) - Constructor for class net.imglib2.realtransform.Translation
 
Translation(int) - Constructor for class net.imglib2.realtransform.Translation
 
Translation(double...) - Constructor for class net.imglib2.realtransform.Translation
 
translation - Variable in class net.imglib2.transform.integer.MixedTransform
translation is added to the target vector after applying permutation, projection, inversion operations.
translation - Variable in class net.imglib2.transform.integer.SlicingTransform
translation is added to the target vector after applying the permutation and project-up operations.
Translation - Interface in net.imglib2.transform.integer
TODO
translation - Variable in class net.imglib2.transform.integer.TranslationTransform
target = source + translation.
Translation2D - Class in net.imglib2.realtransform
2-dimensional translation.
Translation2D(double[], Translation2D) - Constructor for class net.imglib2.realtransform.Translation2D
 
Translation2D() - Constructor for class net.imglib2.realtransform.Translation2D
 
Translation2D(double, double) - Constructor for class net.imglib2.realtransform.Translation2D
 
Translation2D(double...) - Constructor for class net.imglib2.realtransform.Translation2D
 
Translation3D - Class in net.imglib2.realtransform
3-dimensional translation.
Translation3D(double[], Translation3D) - Constructor for class net.imglib2.realtransform.Translation3D
 
Translation3D() - Constructor for class net.imglib2.realtransform.Translation3D
 
Translation3D(double, double, double) - Constructor for class net.imglib2.realtransform.Translation3D
 
Translation3D(double...) - Constructor for class net.imglib2.realtransform.Translation3D
 
TranslationGet - Interface in net.imglib2.realtransform
An n-dimensional translation vector whose fields can be accessed through their dimension index or as a double array.
TranslationRandomAccess<T> - Class in net.imglib2.view
TODO
TranslationRandomAccess(TranslationRandomAccess<T>) - Constructor for class net.imglib2.view.TranslationRandomAccess
 
TranslationTransform - Class in net.imglib2.transform.integer
TODO
TranslationTransform(int) - Constructor for class net.imglib2.transform.integer.TranslationTransform
 
TranslationTransform(long[]) - Constructor for class net.imglib2.transform.integer.TranslationTransform
 
TranslationTransform.InverseTranslationTransform - Class in net.imglib2.transform.integer
 
Tree<T extends TreeNode<T>> - Interface in net.imglib2.algorithm.tree
A tree.
tree - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
tree - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
tree - Variable in class net.imglib2.neighborsearch.RadiusNeighborSearchOnKDTree
 
TreeNode<T extends TreeNode<T>> - Interface in net.imglib2.algorithm.tree
A node in a Tree (or Forest).
TreeUtils - Class in net.imglib2.algorithm.tree
 
TreeUtils() - Constructor for class net.imglib2.algorithm.tree.TreeUtils
 
TreeUtils.Consumer<T> - Interface in net.imglib2.algorithm.tree
 
trim() - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
TwoCursorLoop(BiConsumer<A, B>, Cursor<A>, Cursor<B>) - Constructor for class net.imglib2.loops.FastCursorLoops.TwoCursorLoop
 
TWOTHIRDS - Static variable in class net.imglib2.algorithm.bspline.AbstractBsplineKernel
 
TWOTHIRDS - Static variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
type() - Method in class net.imglib2.algorithm.bspline.BSplineCoefficientsInterpolatorFunction
 
type - Variable in class net.imglib2.algorithm.dog.DogDetection.TypedDogDetection
 
type() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
type - Variable in class net.imglib2.algorithm.integral.IntegralImg
 
type - Variable in class net.imglib2.img.array.AbstractArrayCursor
An instance of T
type - Variable in class net.imglib2.img.array.AbstractArrayLocalizingCursor
An instance of T.
type - Variable in class net.imglib2.img.array.ArrayRandomAccess
 
type - Variable in class net.imglib2.img.cell.CellCursor
 
type - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
type - Variable in class net.imglib2.img.cell.CellRandomAccess
 
type() - Method in class net.imglib2.img.ImgFactory
 
type - Variable in class net.imglib2.img.planar.PlanarCursor
 
type - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
type - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
type - Variable in class net.imglib2.img.unsafe.AbstractUnsafeCursor
An instance of T
type - Variable in class net.imglib2.img.unsafe.AbstractUnsafeLocalizingCursor
An instance of T.
type - Variable in class net.imglib2.img.unsafe.UnsafeRandomAccess
 
type - Variable in class net.imglib2.labeling.LabelingConvertedCursor
Deprecated.
 
type - Variable in class net.imglib2.labeling.LabelingConvertedRandomAccess
Deprecated.
 
type - Variable in class net.imglib2.labeling.LabelingType
Deprecated.
 
type - Variable in class net.imglib2.roi.labeling.LabelingType
 
Type<T extends Type<T>> - Interface in net.imglib2.type
The Type interface is responsible for accessing and manipulating (pixel) values.
typedDogDetection - Variable in class net.imglib2.algorithm.dog.DogDetection
 
TypedDogDetection(F) - Constructor for class net.imglib2.algorithm.dog.DogDetection.TypedDogDetection
 
TypeIdentity<T extends Type<T>> - Class in net.imglib2.converter
TODO
TypeIdentity() - Constructor for class net.imglib2.converter.TypeIdentity
 
typeIndex - Variable in class net.imglib2.img.cell.CellCursor
The current index of the type.
typeIndex - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
typeIndex - Variable in class net.imglib2.img.cell.CellRandomAccess
 
typeIndex - Variable in class net.imglib2.img.planar.PlanarCursor
 
typeIndex - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
typeIndex - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
typeSupplier - Variable in class net.imglib2.position.AbstractFunctionEuclideanSpace
 
TypeWriter<T extends Type<T>> - Class in net.imglib2.algorithm.fill
Deprecated.
TypeWriter() - Constructor for class net.imglib2.algorithm.fill.TypeWriter
Deprecated.
 

U

UnaryCompositeMaskPredicate<T> - Interface in net.imglib2.roi.composite
A CompositeMaskPredicate with a unary operator and one operand.
UnaryMaskOperator(UnaryOperator<BoundaryType>, Bounds.UnaryBoundsOperator, UnaryOperator<KnownConstant>) - Constructor for class net.imglib2.roi.Operators.UnaryMaskOperator
 
UNBOUNDED - Static variable in class net.imglib2.roi.Bounds.IntBounds
 
unbounded() - Method in class net.imglib2.roi.Bounds.IntBounds
 
UNBOUNDED - Static variable in class net.imglib2.roi.Bounds.RealBounds
 
unbounded() - Method in class net.imglib2.roi.Bounds.RealBounds
 
unbounded() - Method in class net.imglib2.roi.Bounds
 
unchecked() - Method in interface net.imglib2.cache.Cache
 
unchecked(Cache<K, V>) - Static method in class net.imglib2.cache.util.Caches
 
unchecked(VolatileCache<K, V>) - Static method in class net.imglib2.cache.util.Caches
 
unchecked() - Method in interface net.imglib2.cache.volatiles.VolatileCache
 
unchecked(Object) - Static method in class net.imglib2.util.Cast
Performs an unchecked cast.
UncheckedCache<K,V> - Interface in net.imglib2.cache
 
UncheckedLoaderCache<K,V> - Interface in net.imglib2.cache
 
UncheckedVolatileCache<K,V> - Interface in net.imglib2.cache.volatiles
 
UncheckedVolatileLoaderCache<K,V> - Interface in net.imglib2.cache.volatiles
This is only here for consistency with the non-volatile cache interfaces.
union(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Compute the smallest interval that contains both input intervals.
union(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Compute the smallest interval that contains both input intervals.
unionBounded(Bounds.IntBounds, Bounds.IntBounds) - Method in class net.imglib2.roi.Bounds.IntBounds
 
unionBounded(Bounds.RealBounds, Bounds.RealBounds) - Method in class net.imglib2.roi.Bounds.RealBounds
 
unionBounded(B, B) - Method in class net.imglib2.roi.Bounds
Union of two bounded Bounds.
UnionFind - Interface in net.imglib2.algorithm.util.unionfind
Data structure for the union find algorithm.
UnionInterval(Interval, Interval) - Constructor for class net.imglib2.roi.Bounds.UnionInterval
 
UnionRealInterval(RealInterval, RealInterval) - Constructor for class net.imglib2.roi.Bounds.UnionRealInterval
 
unpaddingIntervalCentered(Interval, Dimensions) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes the un-padding interval required to extract the original sized image from an inverse FFT when padding was applying upon the FFT.
UNSAFE - Static variable in class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil
 
UnsafeAccess<A extends UnsafeAccess<A>> - Interface in net.imglib2.img.basictypelongaccess.unsafe
 
UnsafeAccessFactory - Class in net.imglib2.img.basictypelongaccess.unsafe
Given a PrimitiveType and AccessFlags creates a specific ArrayDataAccess.
UnsafeAccessFactory() - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.UnsafeAccessFactory
 
UnsafeCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
UnsafeCursor(UnsafeCursor<T>) - Constructor for class net.imglib2.img.unsafe.UnsafeCursor
 
UnsafeCursor(UnsafeImg<T, ?>) - Constructor for class net.imglib2.img.unsafe.UnsafeCursor
 
UnsafeImg<T extends NativeLongAccessType<T>,A> - Class in net.imglib2.img.unsafe
This Img stores an image in a single linear array of basic types.
UnsafeImg(A, long[], Fraction) - Constructor for class net.imglib2.img.unsafe.UnsafeImg
TODO check for the size of numPixels being < Integer.MAX_VALUE? TODO Type is suddenly not necessary anymore
UnsafeImgFactory<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
 
UnsafeImgFactory(T) - Constructor for class net.imglib2.img.unsafe.UnsafeImgFactory
 
UnsafeImgFactory() - Constructor for class net.imglib2.img.unsafe.UnsafeImgFactory
Deprecated.
UnsafeImgs - Class in net.imglib2.img.unsafe
Convenience factory methods for creation of UnsafeImg instances with the most common pixel Type variants.
UnsafeLocalizingCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
Localizing Cursor on an ArrayImg.
UnsafeLocalizingCursor(UnsafeLocalizingCursor<T>) - Constructor for class net.imglib2.img.unsafe.UnsafeLocalizingCursor
TODO Javadoc
UnsafeLocalizingCursor(UnsafeImg<T, ?>) - Constructor for class net.imglib2.img.unsafe.UnsafeLocalizingCursor
TODO Javadoc
UnsafeLocalizingSubIntervalCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
UnsafeLocalizingSubIntervalCursor(UnsafeImg<T, ?>, int, int) - Constructor for class net.imglib2.img.unsafe.UnsafeLocalizingSubIntervalCursor
TODO Javadoc
UnsafeLocalizingSubIntervalCursor(UnsafeLocalizingSubIntervalCursor<T>) - Constructor for class net.imglib2.img.unsafe.UnsafeLocalizingSubIntervalCursor
TODO Javadoc
UnsafeRandomAccess<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
UnsafeRandomAccess(UnsafeRandomAccess<T>) - Constructor for class net.imglib2.img.unsafe.UnsafeRandomAccess
 
UnsafeRandomAccess(UnsafeImg<T, ?>) - Constructor for class net.imglib2.img.unsafe.UnsafeRandomAccess
 
UnsafeSubIntervalCursor<T extends NativeLongAccessType<T>> - Class in net.imglib2.img.unsafe
UnsafeSubIntervalCursor(UnsafeSubIntervalCursor<T>) - Constructor for class net.imglib2.img.unsafe.UnsafeSubIntervalCursor
TODO Javadoc
UnsafeSubIntervalCursor(UnsafeImg<T, ?>, int, int) - Constructor for class net.imglib2.img.unsafe.UnsafeSubIntervalCursor
TODO Javadoc
UnsafeUtil - Class in net.imglib2.img.basictypelongaccess.unsafe
 
UnsafeUtil() - Constructor for class net.imglib2.img.basictypelongaccess.unsafe.UnsafeUtil
 
UnsafeUtil.OwningUnsafe - Class in net.imglib2.img.basictypelongaccess.unsafe
 
unshear(RandomAccessible<T>, int, int) - Static method in class net.imglib2.view.Views
Negative shear transform of a RandomAccessible using InverseShearTransform, i.e.
unshear(RandomAccessible<T>, Interval, int, int) - Static method in class net.imglib2.view.Views
Negative shear transform of a RandomAccessible using InverseShearTransform, i.e.
unsigned128Bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsigned128Bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<Unsigned128BitType, LongAccess> using a LongAccess passed as argument.
Unsigned128BitType - Class in net.imglib2.type.numeric.integer
A Type with a bit depth of 128.
Unsigned128BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned128BitType(long, long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned128BitType(BigInteger) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned128BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
Unsigned128BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned128BitType
 
unsigned12Bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsigned12Bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<Unsigned12BitType, LongAccess> using a LongAccess passed as argument.
Unsigned12BitType - Class in net.imglib2.type.numeric.integer
A 12-bit Type whose data is stored in a LongAccess.
Unsigned12BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
 
Unsigned12BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
 
Unsigned12BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
 
Unsigned12BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned12BitType
 
unsigned2Bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsigned2Bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<Unsigned2BitType, LongAccess> using a LongAccess passed as argument.
Unsigned2BitType - Class in net.imglib2.type.numeric.integer
A Type with a bit depth of 2.
Unsigned2BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
 
Unsigned2BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
 
Unsigned2BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
 
Unsigned2BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned2BitType
 
unsigned4Bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsigned4Bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<Unsigned4BitType, LongAccess> using a LongAccess passed as argument.
Unsigned4BitType - Class in net.imglib2.type.numeric.integer
A Type with a bit depth of 4.
Unsigned4BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
 
Unsigned4BitType(long) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
 
Unsigned4BitType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
 
Unsigned4BitType() - Constructor for class net.imglib2.type.numeric.integer.Unsigned4BitType
 
UnsignedByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<UnsignedByteType, ByteArray>.
UnsignedByteAWTScreenImage(ArrayImg<UnsignedByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
 
UnsignedByteAWTScreenImage(UnsignedByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
 
UnsignedByteLongAccessType - Class in net.imglib2.type.numeric.integer
 
UnsignedByteLongAccessType(NativeLongAccessImg<?, ? extends ByteLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
UnsignedByteLongAccessType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
UnsignedByteLongAccessType(ByteLongAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
UnsignedByteLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteLongAccessType
 
UnsignedByteLongAccessTypeUnsignedByteTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
UnsignedByteLongAccessTypeUnsignedByteTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedByteLongAccessTypeUnsignedByteTypeConverter
 
UnsignedByteLongAccessTypeUnsignedByteTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
unsignedBytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedBytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedByteType, ByteArray> reusing a passed byte[] array.
unsignedBytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedByteType, ByteAccess> using a ByteAccess passed as argument.
unsignedBytes(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
unsignedBytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
unsignedBytes(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
unsignedBytes(ByteLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<UnsignedByteType, ByteArray> reusing a passed byte[] array.
UnsignedByteType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
 
UnsignedByteType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
 
UnsignedByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
 
UnsignedByteType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedByteType
 
UnsignedIntAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ShortType, ShortArray>.
UnsignedIntAWTScreenImage(ArrayImg<UnsignedIntType, IntArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
 
UnsignedIntAWTScreenImage(UnsignedIntType, IntArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
 
UnsignedIntDataBuffer - Class in net.imglib2.display.awt
DataBuffer that stores unsigned ints.
UnsignedIntDataBuffer(int[], int) - Constructor for class net.imglib2.display.awt.UnsignedIntDataBuffer
Construct a new buffer of unsigned ints using the given int array.
UnsignedIntDataBuffer(int[][], int) - Constructor for class net.imglib2.display.awt.UnsignedIntDataBuffer
Construct a new buffer of unsigned ints using the given 2D int array.
UnsignedIntLongAccessType - Class in net.imglib2.type.numeric.integer
 
UnsignedIntLongAccessType(NativeLongAccessImg<?, ? extends IntLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
UnsignedIntLongAccessType(long) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
UnsignedIntLongAccessType(IntLongAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
UnsignedIntLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntLongAccessType
 
UnsignedIntLongAccessTypeUnsignedIntTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
UnsignedIntLongAccessTypeUnsignedIntTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedIntLongAccessTypeUnsignedIntTypeConverter
 
UnsignedIntLongAccessTypeUnsignedIntTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
unsignedInts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedInts(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedIntType, IntArray> reusing a passed int[] array.
unsignedInts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedIntType, IntAccess> using a IntAccess passed as argument.
unsignedInts(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
unsignedInts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
unsignedInts(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
unsignedInts(IntLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<UnsignedIntType, IntArray> reusing a passed int[] array.
UnsignedIntType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedIntType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
 
UnsignedIntType(long) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
 
UnsignedIntType(IntAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
 
UnsignedIntType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedIntType
 
UnsignedLongLongAccessType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedLongLongAccessType(NativeLongAccessImg<?, ? extends LongLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
UnsignedLongLongAccessType(long) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
UnsignedLongLongAccessType(BigInteger) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
UnsignedLongLongAccessType(LongLongAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
UnsignedLongLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongLongAccessType
 
UnsignedLongLongAccessTypeUnsignedLongTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
UnsignedLongLongAccessTypeUnsignedLongTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedLongLongAccessTypeUnsignedLongTypeConverter
 
UnsignedLongLongAccessTypeUnsignedLongTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
unsignedLongs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedLongs(long[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedLongType, LongArray> reusing a passed long[] array.
unsignedLongs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedLongType, LongAccess> using a LongAccess passed as argument.
unsignedLongs(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
unsignedLongs(LongLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<LongType, LongArray> reusing a passed long[] array.
unsignedLongss(long[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
UnsignedLongType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedLongType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedLongType(long) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedLongType(BigInteger) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedLongType(LongAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedLongType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedLongType
 
UnsignedShortAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<UnsignedShortType, ShortArray>.
UnsignedShortAWTScreenImage(ArrayImg<UnsignedShortType, ShortArray>) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
 
UnsignedShortAWTScreenImage(UnsignedShortType, ShortArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
 
UnsignedShortLongAccessType - Class in net.imglib2.type.numeric.integer
 
UnsignedShortLongAccessType(NativeLongAccessImg<?, ? extends ShortLongAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
UnsignedShortLongAccessType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
UnsignedShortLongAccessType(ShortLongAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
UnsignedShortLongAccessType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortLongAccessType
 
UnsignedShortLongAccessTypeUnsignedShortTypeConverter - Class in net.imglib2.converter.readwrite.longaccess
 
UnsignedShortLongAccessTypeUnsignedShortTypeConverter() - Constructor for class net.imglib2.converter.readwrite.longaccess.UnsignedShortLongAccessTypeUnsignedShortTypeConverter
 
UnsignedShortLongAccessTypeUnsignedShortTypeConverter.ConvertedAccess - Class in net.imglib2.converter.readwrite.longaccess
 
unsignedShorts(long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedShorts(short[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedShortType, ShortArray> reusing a passed short[] array.
unsignedShorts(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedShortType, ShortAccess> using a ShortAccess passed as argument.
unsignedShorts(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
unsignedShorts(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
unsignedShorts(long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
unsignedShorts(ShortLongAccess, long...) - Static method in class net.imglib2.img.unsafe.UnsafeImgs
Creates an UnsafeImg<UnsignedShortType, ShortArray> reusing a passed short[] array.
UnsignedShortType - Class in net.imglib2.type.numeric.integer
TODO
UnsignedShortType(NativeImg<?, ? extends ShortAccess>) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
 
UnsignedShortType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
 
UnsignedShortType(ShortAccess) - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
 
UnsignedShortType() - Constructor for class net.imglib2.type.numeric.integer.UnsignedShortType
 
unsignedVariableBitLengths(int, long...) - Static method in class net.imglib2.img.array.ArrayImgs
unsignedVariableBitLengths(A, int, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<UnsignedVariableBitLengthType, LongAccess> using a LongAccess passed as argument.
UnsignedVariableBitLengthType - Class in net.imglib2.type.numeric.integer
A Type with arbitrary bit depth up to maximum 64 bits.
UnsignedVariableBitLengthType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
UnsignedVariableBitLengthType(long, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
UnsignedVariableBitLengthType(LongAccess, int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
UnsignedVariableBitLengthType(int) - Constructor for class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
update(double) - Method in class net.imglib2.algorithm.convolution.fast_gauss.FastGaussCalculator
 
update(Localizable, long) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
update(long[], long) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
update(Object) - Method in class net.imglib2.cache.img.SingleCellArrayImg
 
update(Object) - Method in class net.imglib2.img.array.ArrayImg
 
update(Object) - Method in class net.imglib2.img.cell.AbstractCellImg
 
update(ImageProcessor) - Method in class net.imglib2.img.display.imagej.AbstractVirtualStack
 
update(Object) - Method in interface net.imglib2.img.NativeImg
called by type with cursor.
update(Object) - Method in interface net.imglib2.img.NativeLongAccessImg
called by type with cursor.
update(Object) - Method in class net.imglib2.img.planar.PlanarImg
 
update(Object) - Method in class net.imglib2.img.sparse.NtreeImg
 
update(Object) - Method in class net.imglib2.img.unsafe.UnsafeImg
 
update(long[]) - Method in class net.imglib2.labeling.BoundingBox
Deprecated.
update the minimum and maximum extents with the given coordinates.
update(Localizable) - Method in class net.imglib2.roi.labeling.BoundingBox
update the minimum and maximum extents with the given coordinates.
update(long[]) - Method in class net.imglib2.roi.labeling.BoundingBox
update the minimum and maximum extents with the given coordinates.
updateBounds() - Method in class net.imglib2.roi.util.AbstractRealMaskPoint
 
updateCachedMembershipStatus() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
updateCenter(long[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
updateCenter(Localizable) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
updateCenter(long[]) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
updateCenter(Localizable) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
updateCenter(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
updateCenter(Localizable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
updateCenter(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
updateCenter(Localizable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
updateCenter(long[]) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
updateCenter(Localizable) - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
updateContainer(Object) - Method in class net.imglib2.type.AbstractBitType
 
updateContainer(Object) - Method in class net.imglib2.type.label.BasePairCharType
 
updateContainer(Object) - Method in class net.imglib2.type.logic.BitType
 
updateContainer(Object) - Method in class net.imglib2.type.logic.NativeBoolType
 
updateContainer(Object) - Method in interface net.imglib2.type.NativeLongAccessType
 
updateContainer(Object) - Method in interface net.imglib2.type.NativeType
This method is used by an accessor (e.g., a Cursor) to request an update of the current data array.
updateContainer(Object) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.ARGBType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.real.DoubleType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
updateContainer(Object) - Method in class net.imglib2.type.numeric.real.FloatType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileARGBType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileByteType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileDoubleType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileFloatType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileIntType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileLongType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileShortType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
updateContainer(Object) - Method in class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
updateCurrentArrays() - Method in class net.imglib2.display.projector.composite.CompositeXYProjector
Walk through composite[] and store the currently active converters and positions (in dimension CompositeXYProjector.dimIndex) to CompositeXYProjector.currentConverters and CompositeXYProjector.currentPositions.
updateCurrentArrays() - Method in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
Walk through composite[] and store the currently active converters and positions (in dimension CompositeXYRandomAccessibleProjector.dimIndex) to CompositeXYRandomAccessibleProjector.currentConverters and CompositeXYRandomAccessibleProjector.currentPositions.
updateDs() - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
updateDs() - Method in class net.imglib2.realtransform.AffineTransform2D
 
updateDs() - Method in class net.imglib2.realtransform.AffineTransform3D
 
updateError() - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
updateEstimate(double) - Method in class net.imglib2.realtransform.inverse.InverseRealTransformGradientDescent
 
updateIndex(long) - Method in class net.imglib2.type.AbstractNativeLongAccessType
 
updateIndex(long) - Method in interface net.imglib2.type.NativeLongAccessType
Set the index into the current data array.
updateIndex(int) - Method in interface net.imglib2.type.NativeType
Deprecated.
Use index().set(int) instead. If possible, request the index() object only once and re-use it.
updateIndex(long) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
updateIndex(long) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
updateIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
updateIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
updateIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
updateIndex(long) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
updateIndex(long) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
updateIndex(long) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
updateInputLineSampler(SamplingLineIterator<T>, Interval, long[], Localizable) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
Updates the current SamplingLineIterator to the location of the new line that is processed and clears the processing line (set all values to zero)
updateOutputLineWriter(WritableLineIterator<T>, Interval, long[], Localizable) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
Updates the current WritableLineIterator to the location of the new line that is processed.
updateRadius(long) - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
updateSlice(int) - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
updateSlice(int) - Method in class net.imglib2.interpolation.stack.NearestNeighborRealRandomAccessibleStackInterpolator
 
updateSource(RandomAccessibleInterval<T>) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
Updates the source.
updateW() - Method in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
upperTailCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of values in the upper tail bin (if any).
upperTailCount(int) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values in the upper tail bin (if any) for the given dimension.
upperTailCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of values in all upper tail bins (if any).
use(long, int) - Method in class net.imglib2.cache.iotiming.IoTimeBudget
Use the specified amount of time of the specified level.
Util - Class in net.imglib2.algorithm.math.abstractions
 
Util() - Constructor for class net.imglib2.algorithm.math.abstractions.Util
 
Util - Class in net.imglib2.util
A collection of general-purpose utility methods for working with ImgLib2 data structures.
Util() - Constructor for class net.imglib2.util.Util
 
Utils - Class in net.imglib2.algorithm.region.localneighborhood
Util class made of static methods, meant to simplify the writing of special cursors.
Utils() - Constructor for class net.imglib2.algorithm.region.localneighborhood.Utils
 

V

val(double[], double[]) - Method in class net.imglib2.algorithm.localization.EllipticGaussianOrtho
 
val(double[], double[]) - Method in interface net.imglib2.algorithm.localization.FitFunction
Evaluates this function at point x.
val(double[], double[]) - Method in class net.imglib2.algorithm.localization.Gaussian
 
valid - Variable in class net.imglib2.algorithm.localextrema.RefinedPeak
 
valid - Variable in class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
 
valid - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileARGB
 
valid - Variable in class net.imglib2.interpolation.randomaccess.ClampingNLinearInterpolatorVolatileRealType
 
valid - Variable in class net.imglib2.Volatile
 
validate(IFunction) - Static method in class net.imglib2.algorithm.math.Compute
 
validate() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
validate() - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Build the cached list of stripes if necessary.
validateRealExtremaCache() - Method in class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
value() - Method in interface net.imglib2.algorithm.componenttree.Component
Get the image threshold that created the connected component (extremal region).
value() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
Get the image threshold that created the extremal region.
value() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponent
Get the image threshold that created the extremal region.
value - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
value - Variable in class net.imglib2.algorithm.localextrema.RefinedPeak
 
value - Variable in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
value - Variable in class net.imglib2.KDTree.ValueNode
 
value - Variable in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
value - Variable in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
value - Variable in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
valueCount() - Method in class net.imglib2.histogram.Histogram1d
Returns the frequency count of all values in the middle of the distribution.
valueCount(int) - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of all values in the middle of the distribution for a given dimension.
valueCount() - Method in class net.imglib2.histogram.HistogramNd
Returns the frequency count of all values in the middle of the distribution.
valueEquals(LabelingType<T>) - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
valueEquals(LabelingType<T>) - Method in class net.imglib2.roi.labeling.LabelingType
 
valueEquals(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
 
valueEquals(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
 
valueEquals(BitType) - Method in class net.imglib2.type.logic.BitType
 
valueEquals(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
valueEquals(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
valueEquals(ARGBLongAccessType) - Method in class net.imglib2.type.numeric.ARGBLongAccessType
 
valueEquals(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
valueEquals(ComplexDoubleLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleLongAccessType
 
valueEquals(ComplexFloatLongAccessType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatLongAccessType
 
valueEquals(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
Default test at long precision.
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericByteLongAccessType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericIntLongAccessType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericLongLongAccessType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericShortLongAccessType
 
valueEquals(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
valueEquals(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
valueEquals(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
Default test at long precision.
valueEquals(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
valueEquals(DoubleLongAccessType) - Method in class net.imglib2.type.numeric.real.DoubleLongAccessType
 
valueEquals(FloatLongAccessType) - Method in class net.imglib2.type.numeric.real.FloatLongAccessType
 
valueEquals(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
ValueEquals<T> - Interface in net.imglib2.type.operators
Tests equivalency of values.
valueEquals(T) - Method in interface net.imglib2.type.operators.ValueEquals
 
valueEquals(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
valueEquals(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
valueEquals(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
valueEqualsObject(T, Object) - Static method in class net.imglib2.util.Util
This method should be used in implementations of ValueEquals, to override Object.equals(Object).
valueMinusDelta(T) - Method in interface net.imglib2.algorithm.componenttree.mser.ComputeDelta
Compute the threshold = (value - delta).
valueMinusDelta(T) - Method in class net.imglib2.algorithm.componenttree.mser.ComputeDeltaBrightToDark
 
valueMinusDelta(T) - Method in class net.imglib2.algorithm.componenttree.mser.ComputeDeltaDarkToBright
 
ValueNode(T, RealLocalizable, int, KDTree.ValueNode<T>, KDTree.ValueNode<T>) - Constructor for class net.imglib2.KDTree.ValueNode
 
ValueNode(KDTree.ValueNode<T>) - Constructor for class net.imglib2.KDTree.ValueNode
 
valueOf(String) - Static method in enum net.imglib2.algorithm.dog.DogDetection.ExtremaType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.algorithm.fft.FourierTransform.FFTOptimization
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.algorithm.fft.FourierTransform.PreProcessing
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.algorithm.fft.FourierTransform.Rearrangement
Deprecated.
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.algorithm.labeling.ConnectedComponents.StructuringElement
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.algorithm.morphology.distance.DistanceTransform.DISTANCE_TYPE
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.cache.img.optional.CacheOptions.CacheType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.cache.volatiles.LoadingStrategy
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.converter.ChannelARGBConverter.Channel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.converter.ColorChannelOrder
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.img.basictypeaccess.AccessFlags
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.roi.boundary.Boundary.StructuringElement
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.roi.BoundaryType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.roi.KnownConstant
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.type.label.BasePairBitType.Base
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.type.PrimitiveType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum net.imglib2.view.StackView.StackAccessMode
Returns the enum constant of this type with the specified name.
ValuePair<A,B> - Class in net.imglib2.util
TODO
ValuePair(A, B) - Constructor for class net.imglib2.util.ValuePair
 
values() - Static method in enum net.imglib2.algorithm.dog.DogDetection.ExtremaType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.algorithm.fft.FourierTransform.FFTOptimization
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.algorithm.fft.FourierTransform.PreProcessing
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.algorithm.fft.FourierTransform.Rearrangement
Deprecated.
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.algorithm.labeling.ConnectedComponents.StructuringElement
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.algorithm.morphology.distance.DistanceTransform.DISTANCE_TYPE
Returns an array containing the constants of this enum type, in the order they are declared.
values - Variable in class net.imglib2.cache.img.DiskCachedCellImgOptions
 
Values() - Constructor for class net.imglib2.cache.img.DiskCachedCellImgOptions.Values
 
values() - Static method in enum net.imglib2.cache.img.optional.CacheOptions.CacheType
Returns an array containing the constants of this enum type, in the order they are declared.
values - Variable in class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions
 
Values() - Constructor for class net.imglib2.cache.img.ReadOnlyCachedCellImgOptions.Values
 
values() - Static method in enum net.imglib2.cache.volatiles.LoadingStrategy
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.converter.ChannelARGBConverter.Channel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.converter.ColorChannelOrder
Returns an array containing the constants of this enum type, in the order they are declared.
values - Variable in class net.imglib2.display.AbstractArrayColorTable
Actual color table values.
values() - Static method in enum net.imglib2.img.basictypeaccess.AccessFlags
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.outofbounds.OutOfBoundsMirrorFactory.Boundary
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.roi.boundary.Boundary.StructuringElement
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.roi.BoundaryType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.roi.KnownConstant
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.type.label.BasePairBitType.Base
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.type.PrimitiveType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum net.imglib2.view.StackView.StackAccessMode
Returns an array containing the constants of this enum type, in the order they are declared.
valueToBin(int, double, double, double) - Static method in class net.imglib2.util.Binning
Convert value to bin number.
var(String) - Static method in class net.imglib2.algorithm.math.ImgMath
 
Var - Class in net.imglib2.algorithm.math
 
Var(String) - Constructor for class net.imglib2.algorithm.math.Var
 
Variable<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
Variable(String, LetBinding<O>) - Constructor for class net.imglib2.algorithm.math.execution.Variable
 
Variable(String, O) - Constructor for class net.imglib2.algorithm.math.execution.Variable
Used by the ImgSource to replace itself with a Let-Var when inside the Then or Else of an If statement.
Vbreak - Class in net.imglib2.algorithm.morphology.table2d
Removes pixels that form horizontal bridges between vertical lines.
Vbreak() - Constructor for class net.imglib2.algorithm.morphology.table2d.Vbreak
 
vbreak(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Vbreak
 
vbreak(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Vbreak
 
verify(long...) - Static method in interface net.imglib2.Dimensions
Verify that dimensions is not null or empty, and that all dimensions are positive.
verify(int...) - Static method in interface net.imglib2.Dimensions
Verify that dimensions is not null or empty, and that all dimensions are positive.
verifyAllPositive(long...) - Static method in interface net.imglib2.Dimensions
Check that all entries in dimensions are positive
verifyAllPositive(int...) - Static method in interface net.imglib2.Dimensions
Check that all entries in dimensions are positive
verifyComplexToComplexfftDimensions(int, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
 
verifyDimensions(int[]) - Static method in class net.imglib2.img.cell.CellImgFactory
Deprecated.
This method has been deprecated in favor of Dimensions.verify(int...).
verifyDimensions(long[]) - Static method in class net.imglib2.img.cell.CellImgFactory
Deprecated.
This method has been deprecated in favor of Dimensions.verify(long...).
verifyDimensions(List<L>, int) - Static method in class net.imglib2.KDTree
Check whether all positions in the positions list have dimension n.
verifyRealToComplexfftDimensions(int, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
 
vertex(int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
Return a copy of the vertex
vertex(int) - Method in class net.imglib2.roi.geom.real.DefaultWritablePolyline
Returns the vertex at the specified position.
vertex(int) - Method in interface net.imglib2.roi.geom.real.Polyshape
Returns the vertex at the specified position.
vertex(int) - Method in interface net.imglib2.roi.geom.real.WritablePolyshape
 
VertexList(int) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolygon2D.VertexList
 
VertexList(double[]) - Constructor for class net.imglib2.roi.geom.real.DefaultWritablePolygon2D.VertexList
 
vertices() - Method in interface net.imglib2.roi.geom.real.Polyshape
 
view() - Method in class net.imglib2.algorithm.math.abstractions.ViewableFunction
 
view(O) - Method in class net.imglib2.algorithm.math.abstractions.ViewableFunction
 
view(C, O) - Method in class net.imglib2.algorithm.math.abstractions.ViewableFunction
 
view(O, Converter<C, O>) - Method in class net.imglib2.algorithm.math.abstractions.ViewableFunction
 
view(Interval, Converter<RealType<?>, C>, C, O, Converter<C, O>) - Method in class net.imglib2.algorithm.math.Compute
 
view(C, O) - Method in class net.imglib2.algorithm.math.Compute
View the result of the computations as a RandomAccessibleInterval, i.e.
view(O) - Method in class net.imglib2.algorithm.math.Compute
 
view() - Method in class net.imglib2.algorithm.math.Compute
 
view(Interval) - Method in class net.imglib2.algorithm.math.Compute
 
view(Interval, O) - Method in class net.imglib2.algorithm.math.Compute
 
view(ViewableFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
Almost all IFunction are also ViewableFunction.
View - Interface in net.imglib2
An interface which marks an object that is a lightweight wrapper or "view" around actual data.
ViewableFunction - Class in net.imglib2.algorithm.math.abstractions
 
ViewableFunction() - Constructor for class net.imglib2.algorithm.math.abstractions.ViewableFunction
 
viewDouble() - Method in class net.imglib2.algorithm.math.abstractions.ViewableFunction
 
viewDouble(O) - Method in class net.imglib2.algorithm.math.abstractions.ViewableFunction
 
viewDouble(O, Converter<RealType<?>, O>) - Method in class net.imglib2.algorithm.math.abstractions.ViewableFunction
 
viewFloats(ViewableFunction) - Static method in class net.imglib2.algorithm.math.ImgMath
Almost all IFunction are also ViewableFunction.
Views - Class in net.imglib2.view
Create light-weight views into RandomAccessibles.
Views() - Constructor for class net.imglib2.view.Views
 
ViewTransforms - Class in net.imglib2.view
Utility methods to create transformation for the common operations that are provided in Views.
ViewTransforms() - Constructor for class net.imglib2.view.ViewTransforms
 
VirtualStackAdapter - Class in net.imglib2.img
Wrapper for ImagePlus using imglib2-caches.
VirtualStackAdapter() - Constructor for class net.imglib2.img.VirtualStackAdapter
 
visit(RandomAccessible<T>) - Method in class net.imglib2.view.TransformBuilder
Visit a RandomAccessible (while traversing the view hierarchy).
visitExtended(ExtendedRandomAccessibleInterval<T, ?>) - Method in class net.imglib2.view.TransformBuilder
Visit a ExtendedRandomAccessibleInterval (while traversing the view hierarchy).
visitTransformed(TransformedRandomAccessible<T>) - Method in class net.imglib2.view.TransformBuilder
Visit a TransformedRandomAccessible (while traversing the view hierarchy).
Volatile<T> - Class in net.imglib2
Something volatile that has a value and is either VALID or INVALID.
Volatile(T, boolean) - Constructor for class net.imglib2.Volatile
 
Volatile(T) - Constructor for class net.imglib2.Volatile
 
Volatile2DRandomAccessibleProjector<T,A extends Volatile<T>,B> - Class in net.imglib2.display.projector.volatiles
Volatile2DRandomAccessibleProjector(int, int, RandomAccessible<A>, RandomAccessibleInterval<B>, Converter<? super A, B>) - Constructor for class net.imglib2.display.projector.volatiles.Volatile2DRandomAccessibleProjector
 
VolatileAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
A basic type access that can contain valid or invalid data.
volatileAccesses() - Method in interface net.imglib2.cache.img.optional.AccessOptions.Val
 
volatileAccesses(boolean) - Method in interface net.imglib2.cache.img.optional.AccessOptions
 
VolatileARGBType - Class in net.imglib2.type.volatiles
VolatileARGBType(NativeImg<?, ? extends VolatileIntAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileARGBType
 
VolatileARGBType(VolatileIntAccess) - Constructor for class net.imglib2.type.volatiles.VolatileARGBType
 
VolatileARGBType(int) - Constructor for class net.imglib2.type.volatiles.VolatileARGBType
 
VolatileARGBType() - Constructor for class net.imglib2.type.volatiles.VolatileARGBType
 
VolatileArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.volatiles
An ArrayDataAccess that can contain valid or invalid data.
VolatileBooleanAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileBooleanArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileBooleanArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileBooleanArray
 
VolatileBooleanArray(boolean[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileBooleanArray
 
VolatileByteAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileByteArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
 
VolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
 
volatileByteArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
VolatileByteArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.VolatileByteArrayType
 
VolatileByteType - Class in net.imglib2.type.volatiles
A Volatile variant of ByteType.
VolatileByteType(NativeImg<?, ? extends VolatileByteAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileByteType
 
VolatileByteType(VolatileByteAccess) - Constructor for class net.imglib2.type.volatiles.VolatileByteType
 
VolatileByteType(byte) - Constructor for class net.imglib2.type.volatiles.VolatileByteType
 
VolatileByteType() - Constructor for class net.imglib2.type.volatiles.VolatileByteType
 
VolatileCache<K,V> - Interface in net.imglib2.cache.volatiles
 
VolatileCacheAsUncheckedVolatileCacheAdapter<K,V> - Class in net.imglib2.cache.util
 
VolatileCacheAsUncheckedVolatileCacheAdapter(VolatileCache<K, V>) - Constructor for class net.imglib2.cache.util.VolatileCacheAsUncheckedVolatileCacheAdapter
 
VolatileCacheLoader<K,V> - Interface in net.imglib2.cache.volatiles
 
VolatileCharAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileCharArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
 
VolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
 
volatileCharArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
VolatileCharArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.VolatileCharArrayType
 
VolatileDoubleAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileDoubleArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
 
VolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
 
volatileDoubleArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
VolatileDoubleArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.VolatileDoubleArrayType
 
VolatileDoubleType - Class in net.imglib2.type.volatiles
A Volatile variant of DoubleType.
VolatileDoubleType(NativeImg<?, ? extends VolatileDoubleAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileDoubleType
 
VolatileDoubleType(VolatileDoubleAccess) - Constructor for class net.imglib2.type.volatiles.VolatileDoubleType
 
VolatileDoubleType(double) - Constructor for class net.imglib2.type.volatiles.VolatileDoubleType
 
VolatileDoubleType() - Constructor for class net.imglib2.type.volatiles.VolatileDoubleType
 
VolatileFloatAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileFloatArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
 
VolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
 
volatileFloatArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
VolatileFloatArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.VolatileFloatArrayType
 
VolatileFloatType - Class in net.imglib2.type.volatiles
A Volatile variant of FloatType.
VolatileFloatType(NativeImg<?, ? extends VolatileFloatAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileFloatType
 
VolatileFloatType(VolatileFloatAccess) - Constructor for class net.imglib2.type.volatiles.VolatileFloatType
 
VolatileFloatType(float) - Constructor for class net.imglib2.type.volatiles.VolatileFloatType
 
VolatileFloatType() - Constructor for class net.imglib2.type.volatiles.VolatileFloatType
 
VolatileIntAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileIntArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
 
VolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
 
volatileIntArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
VolatileIntArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.VolatileIntArrayType
 
VolatileIntType - Class in net.imglib2.type.volatiles
A Volatile variant of IntType.
VolatileIntType(NativeImg<?, ? extends VolatileIntAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileIntType
 
VolatileIntType(VolatileIntAccess) - Constructor for class net.imglib2.type.volatiles.VolatileIntType
 
VolatileIntType(int) - Constructor for class net.imglib2.type.volatiles.VolatileIntType
 
VolatileIntType() - Constructor for class net.imglib2.type.volatiles.VolatileIntType
 
VolatileLoaderCache<K,V> - Interface in net.imglib2.cache.volatiles
 
VolatileLoaderCacheAsVolatileCacheAdapter<K,V> - Class in net.imglib2.cache.util
 
VolatileLoaderCacheAsVolatileCacheAdapter(VolatileLoaderCache<K, V>, VolatileCacheLoader<K, V>) - Constructor for class net.imglib2.cache.util.VolatileLoaderCacheAsVolatileCacheAdapter
 
VolatileLoaderRemoverCache<K,V,D> - Interface in net.imglib2.cache.volatiles
This is only here for consistency with the non-volatile cache interfaces.
VolatileLongAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileLongArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
 
VolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
 
volatileLongArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
VolatileLongArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.VolatileLongArrayType
 
VolatileLongType - Class in net.imglib2.type.volatiles
A Volatile variant of LongType.
VolatileLongType(NativeImg<?, ? extends VolatileLongAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileLongType
 
VolatileLongType(VolatileLongAccess) - Constructor for class net.imglib2.type.volatiles.VolatileLongType
 
VolatileLongType(long) - Constructor for class net.imglib2.type.volatiles.VolatileLongType
 
VolatileLongType() - Constructor for class net.imglib2.type.volatiles.VolatileLongType
 
VolatileNumericType<T extends NumericType<T>> - Class in net.imglib2.type.volatiles
Something volatile that has a value and is either VALID or INVALID.
VolatileNumericType(T, boolean) - Constructor for class net.imglib2.type.volatiles.VolatileNumericType
 
VolatileNumericType(T) - Constructor for class net.imglib2.type.volatiles.VolatileNumericType
 
VolatileRealType<T extends RealType<T>> - Class in net.imglib2.type.volatiles
Something volatile that has a value and is either VALID or INVALID.
VolatileRealType(T, boolean) - Constructor for class net.imglib2.type.volatiles.VolatileRealType
 
VolatileRealType(T) - Constructor for class net.imglib2.type.volatiles.VolatileRealType
 
VolatileRealTypeARGBConverter - Class in net.imglib2.converter
Converts a VolatileRealType to an ARGBType.
VolatileRealTypeARGBConverter(ARGBType) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
 
VolatileRealTypeARGBConverter() - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
 
VolatileRealTypeARGBConverter(double, double, ARGBType) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
 
VolatileRealTypeARGBConverter(double, double) - Constructor for class net.imglib2.converter.VolatileRealTypeARGBConverter
 
VolatileRemoverCache<K,V,D> - Interface in net.imglib2.cache.volatiles
This is only here for consistency with the non-volatile cache interfaces.
VolatileShortAccess - Interface in net.imglib2.img.basictypeaccess.volatiles
 
VolatileShortArray - Class in net.imglib2.img.basictypeaccess.volatiles.array
VolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
 
VolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
 
volatileShortArrayIo - Static variable in interface net.imglib2.cache.img.AccessIo
 
VolatileShortArrayType() - Constructor for class net.imglib2.cache.img.AccessIo.VolatileShortArrayType
 
VolatileShortType - Class in net.imglib2.type.volatiles
A Volatile variant of ShortType.
VolatileShortType(NativeImg<?, ? extends VolatileShortAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileShortType
 
VolatileShortType(VolatileShortAccess) - Constructor for class net.imglib2.type.volatiles.VolatileShortType
 
VolatileShortType(short) - Constructor for class net.imglib2.type.volatiles.VolatileShortType
 
VolatileShortType() - Constructor for class net.imglib2.type.volatiles.VolatileShortType
 
VolatileUnsignedByteType - Class in net.imglib2.type.volatiles
VolatileUnsignedByteType(NativeImg<?, ? extends VolatileByteAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
VolatileUnsignedByteType(VolatileByteAccess) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
VolatileUnsignedByteType(int) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
VolatileUnsignedByteType() - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedByteType
 
VolatileUnsignedIntType - Class in net.imglib2.type.volatiles
VolatileUnsignedIntType(NativeImg<?, ? extends VolatileIntAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
VolatileUnsignedIntType(VolatileIntAccess) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
VolatileUnsignedIntType(int) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
VolatileUnsignedIntType() - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedIntType
 
VolatileUnsignedLongType - Class in net.imglib2.type.volatiles
VolatileUnsignedLongType(NativeImg<?, ? extends VolatileLongAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
VolatileUnsignedLongType(VolatileLongAccess) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
VolatileUnsignedLongType(long) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
VolatileUnsignedLongType() - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedLongType
 
VolatileUnsignedShortType - Class in net.imglib2.type.volatiles
VolatileUnsignedShortType(NativeImg<?, ? extends VolatileShortAccess>) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
VolatileUnsignedShortType(VolatileShortAccess) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
VolatileUnsignedShortType(int) - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
VolatileUnsignedShortType() - Constructor for class net.imglib2.type.volatiles.VolatileUnsignedShortType
 
VolumetricSearch<I extends RealInterval> - Class in net.imglib2.algorithm.kdtree
The volumetric search uses a K-D tree to search for all hyper-rectangular nodes that contain a given point.
VolumetricSearch(List<I>) - Constructor for class net.imglib2.algorithm.kdtree.VolumetricSearch
 
voteLines(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.
voteLines(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.
voteLines(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, int) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.
voteLines(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, int, T) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.
voteLines(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, int, Predicate<T>) - Static method in class net.imglib2.algorithm.hough.HoughTransforms
Runs a Hough Line Tranform on an image and populates the vote space parameter with the results.

W

w - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
w - Variable in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
w1 - Variable in class net.imglib2.interpolation.stack.LinearRealRandomAccessibleStackInterpolator
 
wakeUp() - Method in class net.imglib2.cache.queue.FetcherThreads
Wake up all Fetcher threads immediately.
Watershed<T extends RealType<T>,L extends Comparable<L>> - Class in net.imglib2.algorithm.labeling
Watershed algorithms.
Watershed() - Constructor for class net.imglib2.algorithm.labeling.Watershed
 
Watershed.PixelIntensity<U extends Comparable<U>> - Class in net.imglib2.algorithm.labeling
 
WeakRefLoaderCache<K,V> - Class in net.imglib2.cache.ref
 
WeakRefLoaderCache() - Constructor for class net.imglib2.cache.ref.WeakRefLoaderCache
 
WeakRefVolatileCache<K,V> - Class in net.imglib2.cache.ref
 
WeakRefVolatileCache(Cache<K, V>, BlockingFetchQueues<Callable<?>>, CreateInvalid<? super K, ? extends V>) - Constructor for class net.imglib2.cache.ref.WeakRefVolatileCache
 
WeakRefVolatileLoaderCache<K,V> - Class in net.imglib2.cache.ref
 
WeakRefVolatileLoaderCache(LoaderCache<K, V>, BlockingFetchQueues<Callable<?>>) - Constructor for class net.imglib2.cache.ref.WeakRefVolatileLoaderCache
 
weights - Variable in class net.imglib2.algorithm.interpolation.randomaccess.BSplineInterpolator
 
weights - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Weights for each pixel of the 2x2x...x2 hypercube of pixels participating in the interpolation.
WideRegionEnhancer(double) - Constructor for class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion.WideRegionEnhancer
 
width - Variable in class net.imglib2.img.imageplus.ImagePlusImg
 
width - Variable in class net.imglib2.img.planar.PlanarRandomAccess
 
willPreserveBounds(RealTransform) - Static method in class net.imglib2.roi.Operators.RealTransformMaskOperator
Checks if the given transform will result in a bounded composite.
withLoader(CacheLoader<K, V>) - Method in interface net.imglib2.cache.LoaderCache
 
withLoader(CacheLoader<K, V>) - Method in interface net.imglib2.cache.LoaderRemoverCache
 
withLoader(VolatileLoaderCache<K, V>, VolatileCacheLoader<K, V>) - Static method in class net.imglib2.cache.util.Caches
 
withLoader(LoaderCache<K, V>, CacheLoader<K, V>) - Static method in class net.imglib2.cache.util.Caches
 
withLoader(VolatileCacheLoader<K, V>) - Method in interface net.imglib2.cache.volatiles.VolatileLoaderCache
 
withRemover(CacheRemover<K, V, D>) - Method in interface net.imglib2.cache.LoaderRemoverCache
 
withRemover(CacheRemover<K, V, D>) - Method in interface net.imglib2.cache.RemoverCache
 
withRemover(LoaderRemoverCache<K, V, D>, CacheRemover<K, V, D>) - Static method in class net.imglib2.cache.util.Caches
 
wrap(Object) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
wrap(A) - Method in interface net.imglib2.cache.img.LoadedCellCacheLoader.ArrayDataAccessWrapper
 
wrap(long[]) - Static method in class net.imglib2.FinalDimensions
Create a FinalDimensions object that stores its coordinates in the provided position array.
wrap(long[], long[]) - Static method in class net.imglib2.FinalInterval
Create an Interval that stores its min and max in the provided arrays.
wrap(double[], double[]) - Static method in class net.imglib2.FinalRealInterval
Create a FinalRealInterval that stores its min and max in the provided arrays.
wrap(ImgPlus<?>) - Static method in class net.imglib2.img.display.imagej.ArrayImgToVirtualStack
Takes an ImgPlus (IJ2) and wraps it into an ImagePlus (IJ1).
wrap(ImgPlus<?>) - Static method in class net.imglib2.img.display.imagej.CellImgToVirtualStack
Wraps the given image as ImagePlus.
wrap(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrap(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a single channel ImagePlus from a RandomAccessibleInterval.
wrap(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrap(RandomAccessibleInterval<ARGBType>) - Static method in class net.imglib2.img.display.imagej.ImageJVirtualStackARGB
 
wrap(RandomAccessibleInterval<T>) - Static method in class net.imglib2.img.display.imagej.ImageJVirtualStackFloat
 
wrap(RandomAccessibleInterval<T>) - Static method in class net.imglib2.img.display.imagej.ImageJVirtualStackUnsignedByte
 
wrap(RandomAccessibleInterval<T>) - Static method in class net.imglib2.img.display.imagej.ImageJVirtualStackUnsignedShort
 
wrap(ImgPlus<? extends RealType<?>>, boolean) - Static method in class net.imglib2.img.display.imagej.ImgToVirtualStack
 
wrap(ImgPlus<?>) - Static method in class net.imglib2.img.display.imagej.ImgToVirtualStack
Wraps an ImgPlus into an ImagePlus.
wrap(ImgPlus<?>) - Static method in class net.imglib2.img.display.imagej.PlanarImgToVirtualStack
Wraps an ImgPlus, that is backed by an PlanarImg into and ImagePlus.
wrap(PlanarImg<?, ?>) - Static method in class net.imglib2.img.display.imagej.PlanarImgToVirtualStack
 
wrap(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrap(RandomAccessibleInterval<T>) - Static method in class net.imglib2.img.ImgView
Represent an arbitrary RandomAccessibleInterval as an Img, with a suitable ImgFactory for its size and type, created by Util.getSuitableImgFactory(net.imglib2.Dimensions, Object).
wrap(RandomAccessibleInterval<T>, ImgFactory<T>) - Static method in class net.imglib2.img.ImgView
Represent an arbitrary RandomAccessibleInterval as an Img.
wrap(ImagePlus) - Static method in class net.imglib2.img.VirtualStackAdapter
Wraps an ImagePlus, into an ImgPlus, that is backed by a PlanarImg.
wrap(long[]) - Static method in class net.imglib2.Point
Create a point that stores its coordinates in the provided position array.
wrap(double[]) - Static method in class net.imglib2.RealPoint
Create a point that stores its coordinates in the provided position array.
wrapAndScaleBitType(RandomAccessibleInterval<BitType>) - Static method in class net.imglib2.img.display.imagej.ImageJVirtualStackUnsignedByte
 
wrapAndScaleBitType(ImgPlus<BitType>) - Static method in class net.imglib2.img.display.imagej.ImgToVirtualStack
Similar to ImgToVirtualStack.wrap(ImgPlus), but works only for ImgPlus of BitType.
wrapBit(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a single channel 8-bit unsigned integer ImagePlus from a BitType RandomAccessibleInterval using a custom Converter .
wrapBit(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapByte(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapByte(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapByte(ImagePlus) - Static method in class net.imglib2.img.VirtualStackAdapter
Wraps a 8 bit ImagePlus, into an ImgPlus, that is backed by a PlanarImg.
wrapDirty(A) - Method in interface net.imglib2.cache.img.LoadedCellCacheLoader.ArrayDataAccessWrapper
 
wrapFloat(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapFloat(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a single channel 32-bit float ImagePlus from a RandomAccessibleInterval using a custom Converter.
wrapFloat(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapFloat(RandomAccessibleInterval<T>, Converter<T, FloatType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a single channel 32-bit float ImagePlus from a RandomAccessibleInterval using a custom Converter.
wrapFloat(RandomAccessibleInterval<T>, Converter<T, FloatType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapFloat(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapFloat(ImagePlus) - Static method in class net.imglib2.img.VirtualStackAdapter
Wraps a 32 bit ImagePlus, into an ImgPlus, that is backed by a PlanarImg.
wrapGenericTransform(RandomAccessible<T>, Transform) - Method in class net.imglib2.view.TransformBuilder
 
wrapImgPlus(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapLocal(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapLocalReal(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapMap(Object, Object[]) - Static method in class net.imglib2.algorithm.math.abstractions.Util
 
wrapMixedTransform(RandomAccessible<T>, MixedTransform) - Method in class net.imglib2.view.TransformBuilder
 
wrapNumeric(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapNumeric(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapNumericNative(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
WrappedByteLongAccess<A extends ByteAccess> - Class in net.imglib2.img.basictypelongaccess.wrapped
TODO
WrappedByteLongAccess(A) - Constructor for class net.imglib2.img.basictypelongaccess.wrapped.WrappedByteLongAccess
 
WrappedCharLongAccess<A extends CharAccess> - Class in net.imglib2.img.basictypelongaccess.wrapped
TODO
WrappedCharLongAccess(A) - Constructor for class net.imglib2.img.basictypelongaccess.wrapped.WrappedCharLongAccess
 
WrappedDoubleLongAccess<A extends DoubleAccess> - Class in net.imglib2.img.basictypelongaccess.wrapped
TODO
WrappedDoubleLongAccess(A) - Constructor for class net.imglib2.img.basictypelongaccess.wrapped.WrappedDoubleLongAccess
 
WrappedFloatLongAccess<A extends FloatAccess> - Class in net.imglib2.img.basictypelongaccess.wrapped
TODO
WrappedFloatLongAccess(A) - Constructor for class net.imglib2.img.basictypelongaccess.wrapped.WrappedFloatLongAccess
 
WrappedImg<T> - Interface in net.imglib2.img
An object that wraps an Img somehow.
WrappedIntLongAccess<A extends IntAccess> - Class in net.imglib2.img.basictypelongaccess.wrapped
TODO
WrappedIntLongAccess(A) - Constructor for class net.imglib2.img.basictypelongaccess.wrapped.WrappedIntLongAccess
 
WrappedIterativeInvertibleRealTransform<T extends RealTransform> - Class in net.imglib2.realtransform.inverse
 
WrappedIterativeInvertibleRealTransform(T) - Constructor for class net.imglib2.realtransform.inverse.WrappedIterativeInvertibleRealTransform
 
WrappedLongLongAccess<A extends LongAccess> - Class in net.imglib2.img.basictypelongaccess.wrapped
TODO
WrappedLongLongAccess(A) - Constructor for class net.imglib2.img.basictypelongaccess.wrapped.WrappedLongLongAccess
 
WrappedShortLongAccess<A extends ShortAccess> - Class in net.imglib2.img.basictypelongaccess.wrapped
TODO
WrappedShortLongAccess(A) - Constructor for class net.imglib2.img.basictypelongaccess.wrapped.WrappedShortLongAccess
 
wrapReal(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapReal(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapRealNative(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapRGB(RandomAccessibleInterval<ARGBType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a 24bit RGB ImagePlus from a RandomAccessibleInterval a using a default (identity) Converter.
wrapRGB(RandomAccessibleInterval<ARGBType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapRGB(RandomAccessibleInterval<T>, Converter<T, ARGBType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a 24bit RGB ImagePlus from a RandomAccessibleInterval a using a custom Converter.
wrapRGB(RandomAccessibleInterval<T>, Converter<T, ARGBType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapRGBA(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapRGBA(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapRGBA(ImagePlus) - Static method in class net.imglib2.img.VirtualStackAdapter
Wraps a 24 bit ImagePlus, into an ImgPlus, that is backed by a PlanarImg.
wrapShort(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapShort(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
wrapShort(ImagePlus) - Static method in class net.imglib2.img.VirtualStackAdapter
Wraps a 16 bit ImagePlus, into an ImgPlus, that is backed by a PlanarImg.
wrapSlicingTransform(RandomAccessible<T>, SlicingTransform) - Method in class net.imglib2.view.TransformBuilder
 
wrapTranslationTransform(RandomAccessible<T>, TranslationTransform) - Method in class net.imglib2.view.TransformBuilder
 
wrapUnsignedByte(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a single channel 8-bit unsigned integer ImagePlus from a RandomAccessibleInterval using a custom Converter.
wrapUnsignedByte(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapUnsignedByte(RandomAccessibleInterval<T>, Converter<T, UnsignedByteType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a single channel 8-bit unsigned integer ImagePlus from a RandomAccessibleInterval using a custom Converter.
wrapUnsignedByte(RandomAccessibleInterval<T>, Converter<T, UnsignedByteType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapUnsignedShort(RandomAccessibleInterval<T>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a single channel 16-bit unsigned integer ImagePlus from a RandomAccessibleInterval using a default Converter (clamp values to range [0, 65535]).
wrapUnsignedShort(RandomAccessibleInterval<T>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
wrapUnsignedShort(RandomAccessibleInterval<T>, Converter<T, UnsignedShortType>, String, ExecutorService) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
Create a single channel 16-bit unsigned integer ImagePlus from a RandomAccessibleInterval using a custom Converter.
wrapUnsignedShort(RandomAccessibleInterval<T>, Converter<T, UnsignedShortType>, String) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
WritableBox - Interface in net.imglib2.roi.geom.real
A modifiable Box.
WritableEllipsoid - Interface in net.imglib2.roi.geom.real
A modifiable Ellipsoid.
WritableLine - Interface in net.imglib2.roi.geom.real
A modifiable Line.
WritableLineIterator<T extends Type<T>> - Class in net.imglib2.algorithm.gauss
Deprecated.
WritableLineIterator(int, long, RandomAccess<T>) - Constructor for class net.imglib2.algorithm.gauss.WritableLineIterator
Deprecated.
Make a new AbstractWritableLineIterator which iterates a 1d line of a certain length and is used as the input for the convolution operation
WritablePointMask - Interface in net.imglib2.roi.geom.real
A modifiable PointMask.
WritablePolygon2D - Interface in net.imglib2.roi.geom.real
A modifiable Polygon2D.
WritablePolyline - Interface in net.imglib2.roi.geom.real
A modifiable Polyline.
WritablePolyshape - Interface in net.imglib2.roi.geom.real
A modifiable Polyshape.
WritableRealPointCollection<L extends RealLocalizable> - Interface in net.imglib2.roi.geom.real
A modifiable RealPointCollection.
WritableSphere - Interface in net.imglib2.roi.geom.real
A modifiable Sphere.
WritableSuperEllipsoid - Interface in net.imglib2.roi.geom.real
A modifiable SuperEllipsoid.
write(T, T) - Method in class net.imglib2.algorithm.fill.TypeWriter
Deprecated.
 
write(U, U) - Method in interface net.imglib2.algorithm.fill.Writer
Deprecated.
 
WriteConvertedCursor<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedCursor(Cursor<A>, Supplier<SamplerConverter<? super A, B>>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedCursor
 
WriteConvertedCursor(Cursor<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedCursor
 
WriteConvertedIterableInterval<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedIterableInterval(IterableInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
 
WriteConvertedIterableInterval(IterableInterval<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
 
WriteConvertedIterableRandomAccessibleInterval<A,B,S extends RandomAccessible<A> & IterableInterval<A>> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedIterableRandomAccessibleInterval(S, Supplier<SamplerConverter<? super A, B>>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
WriteConvertedIterableRandomAccessibleInterval(S, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
WriteConvertedIterableRealInterval<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedIterableRealInterval(IterableRealInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableRealInterval
 
WriteConvertedIterableRealInterval(IterableRealInterval<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedIterableRealInterval
 
WriteConvertedRandomAccess<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedRandomAccess(RandomAccess<A>, Supplier<SamplerConverter<? super A, B>>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
 
WriteConvertedRandomAccess(RandomAccess<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
 
WriteConvertedRandomAccessible<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedRandomAccessible(RandomAccessible<A>, Supplier<SamplerConverter<? super A, B>>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
 
WriteConvertedRandomAccessible(RandomAccessible<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccessible
 
WriteConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, Supplier<SamplerConverter<? super A, B>>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
 
WriteConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRandomAccessibleInterval
 
WriteConvertedRealCursor<A,B> - Class in net.imglib2.converter.readwrite
TODO
WriteConvertedRealCursor(RealCursor<A>, Supplier<SamplerConverter<? super A, B>>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRealCursor
 
WriteConvertedRealCursor(RealCursor<A>, SamplerConverter<? super A, B>) - Constructor for class net.imglib2.converter.readwrite.WriteConvertedRealCursor
 
writeLine(WritableLineIterator<T>, SamplingLineIterator<T>) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
Writes the computed line back into the output/temp image.
Writer<U> - Interface in net.imglib2.algorithm.fill
Deprecated.

X

X - Variable in class net.imglib2.algorithm.localization.Observation
 
X - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
x - Variable in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
 
xBottom - Variable in class net.imglib2.roi.PolygonRegionOfInterest.Stripe
Deprecated.
 
XOR(Object, Object) - Static method in class net.imglib2.algorithm.math.ImgMath
 
XOR(Object...) - Static method in class net.imglib2.algorithm.math.ImgMath
 
xor(BoundaryType) - Method in enum net.imglib2.roi.BoundaryType
 
XOR - Static variable in class net.imglib2.roi.Bounds
 
xor(B) - Method in class net.imglib2.roi.Bounds
 
xor(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
For points within the region, invert the membership.
xor(Predicate<? super Localizable>) - Method in interface net.imglib2.roi.Mask
 
xor(MaskInterval) - Method in interface net.imglib2.roi.MaskInterval
 
xor(Predicate<? super T>) - Method in interface net.imglib2.roi.MaskPredicate
 
xor(Mask, Predicate<? super Localizable>) - Static method in class net.imglib2.roi.Masks
 
xor(MaskInterval, MaskInterval) - Static method in class net.imglib2.roi.Masks
 
xor(RealMask, Predicate<? super RealLocalizable>) - Static method in class net.imglib2.roi.Masks
 
xor(RealMaskRealInterval, RealMaskRealInterval) - Static method in class net.imglib2.roi.Masks
 
XOR - Static variable in class net.imglib2.roi.Operators
 
xor(Predicate<? super RealLocalizable>) - Method in interface net.imglib2.roi.RealMask
 
xor(RealMaskRealInterval) - Method in interface net.imglib2.roi.RealMaskRealInterval
 
xor(T) - Method in interface net.imglib2.type.BooleanType
 
xor(BitType) - Method in class net.imglib2.type.logic.BitType
 
xor(boolean) - Method in class net.imglib2.type.logic.BoolType
 
xor(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
xor(NativeBoolType) - Method in class net.imglib2.type.logic.NativeBoolType
 
XorLogical - Class in net.imglib2.algorithm.math
 
XorLogical(Object, Object) - Constructor for class net.imglib2.algorithm.math.XorLogical
 
XorLogical(Object...) - Constructor for class net.imglib2.algorithm.math.XorLogical
 
xTop - Variable in class net.imglib2.roi.PolygonRegionOfInterest.Stripe
Deprecated.
 

Y

Y - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
y - Variable in class net.imglib2.roi.geom.real.DefaultWritablePolygon2D
 
yieldDensity(RandomAccess<T>, float[]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
Iterate over a nD equivalent of 3x3 neighborhood, and collect the input values needed in that neighborhood to compute the concrete diffusion scheme.
yieldDensity(RandomAccess<T>, float[]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
Iterate over a 3x3 XY neighborhood around the current RandomAccess location for the input image, and store the 9 values as float in an array, in the following order:
yieldDensity(RandomAccess<T>, float[]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme3D
------------------------- ---------------------------- ---------------------------- → increasing X (first letter) | 2 mmm | 1 cmm | 8 pmm | | 11 mmc | 10 cmc | 9 pmc | | 20 mmp | 19 cmp | 18 pmp | |------------------------ ---------------------------- ---------------------------- | 3 mcm | 0 ccm | 7 pcm | | 12 mcc | -1 ccc | 16 pcc | | 21 mcp | 25 ccp | 17 pcp | |------------------------ ---------------------------- ---------------------------- | 4 mpm | 5 cpm | 6 ppm | | 13 mpc | 14 cpc | 15 ppc | | 22 mpp | 23 cpp | 24 ppp | ------------------------- ---------------------------- ---------------------------- ↓ increasing Y (second letter)
yieldDiffusionTensor(RandomAccess<FloatType>, float[][]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
Iterate over a nD equivalent of 3x3 neighborhood, and collect the diffusion tensor values needed in that neighborhood to compute the concrete diffusion scheme.
yieldDiffusionTensor(RandomAccess<FloatType>, float[][]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
Iterate over a 3x3 XY neighborhood around the current RandomAccess location for the diffusion tensor, and store the 15 values of interest as a 2D float array, in the following order:
yieldDiffusionTensor(RandomAccess<FloatType>, float[][]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme3D
Real, symmetric diffusion tensor for 3D structures.
yMax - Variable in class net.imglib2.roi.PolygonRegionOfInterest.Stripe
Deprecated.
 
yMin - Variable in class net.imglib2.roi.PolygonRegionOfInterest.Stripe
Deprecated.
 

Z

zero - Variable in class net.imglib2.algorithm.math.abstractions.ABooleanFunction
 
zero - Variable in class net.imglib2.transform.integer.MixedTransform
for each component of the target vector (before translation).
zero - Variable in class net.imglib2.transform.integer.SlicingTransform
for each component of the target vector (before translation).
zeroMin(Interval) - Static method in class net.imglib2.util.Intervals
Returns an Interval with the same dimensions as the given interval, but min is all zero.
zeroMin(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Translate the source such that the upper left corner is at the origin
zeroMin(Interval) - Static method in class net.imglib2.view.ViewTransforms
Returns the transformation that is used by Views.zeroMin(RandomAccessibleInterval).
ZeroMinIntervalIterator - Class in net.imglib2.iterator
Use this class to iterate a virtual rectangular Interval whose min coordinates are at 0n in flat order, that is: row by row, plane by plane, cube by cube, ...
ZeroMinIntervalIterator(long[]) - Constructor for class net.imglib2.iterator.ZeroMinIntervalIterator
 
ZeroMinIntervalIterator(Interval) - Constructor for class net.imglib2.iterator.ZeroMinIntervalIterator
 
zeroMinN(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.composite.CompositeIntervalView
 
zeroMinPos - Variable in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
Position relative to min, for internal calculations.
ZeroMinus<O extends RealType<O>> - Class in net.imglib2.algorithm.math.execution
 
ZeroMinus(O, OFunction<O>) - Constructor for class net.imglib2.algorithm.math.execution.ZeroMinus
 
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