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A

a - Variable in class net.imglib2.realtransform.AbstractAffineTransform
 
a - Variable in class net.imglib2.realtransform.AffineTransform2D
 
a - Variable in class net.imglib2.realtransform.AffineTransform3D
 
a - Variable in class net.imglib2.realtransform.PolynomialTransform2D
holds two coefficients for each polynomial coefficient, including 1 initialized at 0 order, i.e.
a - Variable in class net.imglib2.realtransform.ThinplateSplineTransform
 
a() - Method in class net.imglib2.script.filter.fn.AbstractFilterFn
Call a().eval() to obtain the result as a double of the computation encapsulated by the .
a() - Method in class net.imglib2.script.filter.Paste
 
a() - Method in class net.imglib2.script.math.fn.BinaryOperation
 
a() - Method in class net.imglib2.script.math.fn.UnaryOperation
Call a().eval() to obtain the result as a double of the computation encapsulated by the .
a - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
a - Variable in class net.imglib2.util.ValuePair
 
a - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
Abs - Class in net.imglib2.script.math
TODO
Abs(IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Abs
 
Abs(IFunction) - Constructor for class net.imglib2.script.math.Abs
 
Abs(Number) - Constructor for class net.imglib2.script.math.Abs
 
Abstract3x3TableOperation - Class in net.imglib2.algorithm.morphology.table2d
Performs a binary operation on a 3x3 2-D neighborhood using a table of truth values to drive the operation.
Abstract3x3TableOperation() - Constructor for class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
AbstractAffine3D<T extends NumericType<T>> - Class in net.imglib2.script.algorithm.fn
TODO
AbstractAffine3D(Img<T>, float[], AbstractAffine3D.Mode, Number) - Constructor for class net.imglib2.script.algorithm.fn.AbstractAffine3D
With a default OutOfBoundsStrategyValueFactory with @param outside.
AbstractAffine3D(Img<T>, float[], AbstractAffine3D.Mode, OutOfBoundsFactory<T, Img<T>>) - Constructor for class net.imglib2.script.algorithm.fn.AbstractAffine3D
 
AbstractAffine3D(Img<T>, float, float, float, float, float, float, AbstractAffine3D.Mode, Number) - Constructor for class net.imglib2.script.algorithm.fn.AbstractAffine3D
With a default OutOfBoundsStrategyValueFactory with @param outside.
AbstractAffine3D(Img<T>, float, float, float, float, float, float, AbstractAffine3D.Mode, OutOfBoundsFactory<T, Img<T>>) - Constructor for class net.imglib2.script.algorithm.fn.AbstractAffine3D
 
AbstractAffine3D.Mode - Enum in net.imglib2.script.algorithm.fn
 
AbstractAffineTransform - Class in net.imglib2.realtransform
An abstract implementation of an affine transformation that returns default values referring to the identity transformation for all fields.
AbstractAffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractAffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractAffineTransform(int) - Constructor for class net.imglib2.realtransform.AbstractAffineTransform
 
AbstractARGBDoubleType<T extends AbstractARGBDoubleType<T>> - Class in net.imglib2.type.numeric
 
AbstractARGBDoubleType() - Constructor for class net.imglib2.type.numeric.AbstractARGBDoubleType
 
AbstractArrayColorTable<T> - Class in net.imglib2.display
Abstract superclass for array-based color lookup tables.
AbstractArrayColorTable(T...) - Constructor for class net.imglib2.display.AbstractArrayColorTable
Initializes a color table with the given table values.
AbstractArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
AbstractArrayCursor(AbstractArrayCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
TODO Javadoc
AbstractArrayCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayCursor
TODO Javadoc
AbstractArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
Localizing Cursor on an ArrayImg.
AbstractArrayLocalizingCursor(AbstractArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
TODO Javadoc
AbstractArrayLocalizingCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.AbstractArrayLocalizingCursor
TODO Javadoc
AbstractBit64Type<T extends AbstractBit64Type<T>> - Class in net.imglib2.type
A Type with arbitrary bit depth up to maximum 64 bits.
AbstractBit64Type(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(long, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(LongAccess, int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBit64Type(int) - Constructor for class net.imglib2.type.AbstractBit64Type
 
AbstractBitType<T extends AbstractBitType<T>> - Class in net.imglib2.type
Provides basic infrastructure to implement Types based on single bits stored in a LongAccess
AbstractBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.AbstractBitType
 
AbstractByteArray<A extends AbstractByteArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
AbstractByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
AbstractCellImg<T extends NativeType<T>,A,C extends Cell<A>,I extends RandomAccessible<C> & IterableInterval<C>> - Class in net.imglib2.img.cell
Abstract superclass for Img types that divide their underlying data into cells.
AbstractCellImg(CellGrid, I, Fraction) - Constructor for class net.imglib2.img.cell.AbstractCellImg
 
AbstractCellImg.CellImgSampler<C> - Interface in net.imglib2.img.cell
This interface is implemented by all samplers on the AbstractCellImg.
AbstractCharArray<A extends AbstractCharArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractCharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
AbstractCharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
AbstractComplexType<T extends AbstractComplexType<T>> - Class in net.imglib2.type.numeric.complex
TODO
AbstractComplexType() - Constructor for class net.imglib2.type.numeric.complex.AbstractComplexType
 
AbstractComposite<T> - Class in net.imglib2.view.composite
Abstract implementation of Composite.
AbstractComposite(RandomAccess<T>) - Constructor for class net.imglib2.view.composite.AbstractComposite
 
AbstractConvertedCursor<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedCursor(Cursor<A>) - Constructor for class net.imglib2.converter.AbstractConvertedCursor
 
AbstractConvertedIterableInterval<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableInterval(IterableInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedIterableInterval
 
AbstractConvertedIterableRandomAccessibleInterval<A,B,S extends RandomAccessible<A> & IterableInterval<A>> - Class in net.imglib2.converter
TODO
AbstractConvertedIterableRandomAccessibleInterval(S) - Constructor for class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
AbstractConvertedRandomAccess<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRandomAccess(RandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccess
 
AbstractConvertedRandomAccessible<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRandomAccessible(RandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessible
 
AbstractConvertedRandomAccessibleInterval<A,B> - Class in net.imglib2.converter
 
AbstractConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRandomAccessibleInterval
 
AbstractConvertedRealRandomAccess<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealRandomAccess(RealRandomAccess<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
AbstractConvertedRealRandomAccessible<A,B> - Class in net.imglib2.converter
TODO
AbstractConvertedRealRandomAccessible(RealRandomAccessible<A>) - Constructor for class net.imglib2.converter.AbstractConvertedRealRandomAccessible
 
AbstractCursor<T> - Class in net.imglib2
Abstract implementation of Cursor.
AbstractCursor(int) - Constructor for class net.imglib2.AbstractCursor
 
AbstractCursorInt<T> - Class in net.imglib2
Abstract implementation of Cursor.
AbstractCursorInt(int) - Constructor for class net.imglib2.AbstractCursorInt
 
AbstractDoubleArray<A extends AbstractDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractDoubleArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
AbstractDoubleArray(double[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
AbstractEuclideanSpace - Class in net.imglib2
Superclass of abstract EuclideanSpace implementations (accessors, containers, etc).
AbstractEuclideanSpace(int) - Constructor for class net.imglib2.AbstractEuclideanSpace
 
AbstractFilterFn - Class in net.imglib2.script.filter.fn
TODO
AbstractFilterFn(IFunction) - Constructor for class net.imglib2.script.filter.fn.AbstractFilterFn
 
AbstractFloatArray<A extends AbstractFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractFloatArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
AbstractFloatArray(float[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
AbstractGauss<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss
 
AbstractGauss(double[], RandomAccessible<T>, Interval, RandomAccessible<T>, Localizable, ImgFactory<T>, T) - Constructor for class net.imglib2.algorithm.gauss.AbstractGauss
 
AbstractImg<T> - Class in net.imglib2.img
TODO
AbstractImg(long[]) - Constructor for class net.imglib2.img.AbstractImg
 
AbstractIntArray<A extends AbstractIntArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractIntArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
AbstractIntArray(int[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
AbstractIntegerBitType<T extends AbstractIntegerBitType<T>> - Class in net.imglib2.type.numeric.integer
The performance of this type is traded off for the gain in memory storage.
AbstractIntegerBitType(NativeImg<?, ? extends LongAccess>, int) - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
AbstractIntegerType<T extends AbstractIntegerType<T>> - Class in net.imglib2.type.numeric.integer
TODO
AbstractIntegerType() - Constructor for class net.imglib2.type.numeric.integer.AbstractIntegerType
 
AbstractInterruptibleProjector<A,B> - Class in net.imglib2.ui
Abstract base implementation of a InterruptibleProjector mapping from some source to RandomAccessibleInterval.
AbstractInterruptibleProjector(int, Converter<? super A, B>, RandomAccessibleInterval<B>) - Constructor for class net.imglib2.ui.AbstractInterruptibleProjector
Create new projector with a number of source dimensions and a converter from source to target pixel type.
AbstractInterval - Class in net.imglib2
Implementation of the Interval interface.
AbstractInterval(int) - Constructor for class net.imglib2.AbstractInterval
Creates an n-dimensional AbstractInterval with min and max = 0n.
AbstractInterval(Interval) - Constructor for class net.imglib2.AbstractInterval
Creates a AbstractInterval from another Interval
AbstractInterval(Dimensions) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [0, dimensions-1]
AbstractInterval(long[], long[]) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [min, max] (both including)
AbstractInterval(long[]) - Constructor for class net.imglib2.AbstractInterval
Creates an Interval with the boundaries [0, dimensions-1]
AbstractIterableRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AbstractIterableRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest
Deprecated.
 
AbstractIterableRegionOfInterest.AROIClippedIterableInterval<T extends Type<T>> - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterableInterval<T extends Type<T>> - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor - Class in net.imglib2.roi
Deprecated.
 
AbstractIterableRegionOfInterest.AROIIterationOrder - Class in net.imglib2.roi
Deprecated.
 
AbstractLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
AbstractLabeling(long[], LabelingROIStrategyFactory<T>) - Constructor for class net.imglib2.labeling.AbstractLabeling
Deprecated.
 
AbstractLinearRange - Class in net.imglib2.display
 
AbstractLinearRange() - Constructor for class net.imglib2.display.AbstractLinearRange
 
AbstractLinearRange(double, double) - Constructor for class net.imglib2.display.AbstractLinearRange
 
AbstractLineIterator - Class in net.imglib2.algorithm.gauss
Deprecated.
AbstractLineIterator(int, long, A) - Constructor for class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
Make a new LineIterator which iterates a 1d line of a certain length
AbstractLineIterator(int, long, Localizable, Positionable) - Constructor for class net.imglib2.algorithm.gauss.AbstractLineIterator
Deprecated.
Make a new LineIterator which iterates a 1d line of a certain length
AbstractListImg<T> - Class in net.imglib2.img.list
Abstract base class for Img that store pixels in a single linear array (an ArrayList or similar).In principle, the number of entities stored is limited to Integer.MAX_VALUE.
AbstractListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractListImg
 
AbstractLocalizable - Class in net.imglib2
An abstract class that implements the Localizable interface using a long[] array to maintain position.
AbstractLocalizable(int) - Constructor for class net.imglib2.AbstractLocalizable
 
AbstractLocalizable(long[]) - Constructor for class net.imglib2.AbstractLocalizable
Protected constructor that re-uses the passed position array.
AbstractLocalizableInt - Class in net.imglib2
An abstract class that implements the Localizable interface using an int[] array to maintain position.
AbstractLocalizableInt(int) - Constructor for class net.imglib2.AbstractLocalizableInt
 
AbstractLocalizableInt(int[]) - Constructor for class net.imglib2.AbstractLocalizableInt
Protected constructor that re-uses the passed position array.
AbstractLocalizingCursor<T> - Class in net.imglib2
Abstract base class for localizing Cursors.
AbstractLocalizingCursor(int) - Constructor for class net.imglib2.AbstractLocalizingCursor
 
AbstractLocalizingCursorInt<T> - Class in net.imglib2
Abstract base class for localizing Cursors.
AbstractLocalizingCursorInt(int) - Constructor for class net.imglib2.AbstractLocalizingCursorInt
 
AbstractLongArray<A extends AbstractLongArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractLongArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
AbstractLongArray(long[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
AbstractLongListImg<T> - Class in net.imglib2.img.list
Abstract base class for Img that store pixels in a single linear list addressed by a long.
AbstractLongListImg(long[]) - Constructor for class net.imglib2.img.list.AbstractLongListImg
 
AbstractLongListImg.LongListCursor - Class in net.imglib2.img.list
 
AbstractLongListImg.LongListLocalizingCursor - Class in net.imglib2.img.list
 
AbstractLongListImg.LongListRandomAccess - Class in net.imglib2.img.list
 
AbstractMixedTransform - Class in net.imglib2.transform.integer
TODO
AbstractMixedTransform(int) - Constructor for class net.imglib2.transform.integer.AbstractMixedTransform
 
AbstractMultiResolutionRenderer<A extends AffineSet & AffineGet & Concatenable<AffineGet>> - Class in net.imglib2.ui
A Renderer that uses a coarse-to-fine rendering scheme.
AbstractMultiResolutionRenderer(AffineTransformType<A>, RenderTarget, PainterThread, double[], long, boolean, int) - Constructor for class net.imglib2.ui.AbstractMultiResolutionRenderer
 
AbstractNativeImg<T extends NativeType<T>,A> - Class in net.imglib2.img
TODO
AbstractNativeImg(long[], Fraction) - Constructor for class net.imglib2.img.AbstractNativeImg
 
AbstractNativeLabeling<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
AbstractNativeLabeling(long[], LabelingROIStrategyFactory<T>, LabelingMapping<T>) - Constructor for class net.imglib2.labeling.AbstractNativeLabeling
Deprecated.
 
AbstractNativeType<T extends AbstractNativeType<T>> - Class in net.imglib2.type
TODO
AbstractNativeType() - Constructor for class net.imglib2.type.AbstractNativeType
 
AbstractNeighborhood<T> - Class in net.imglib2.algorithm.region.localneighborhood
A Positionable IterableInterval that serves as a local neighborhood, e.g.
AbstractNeighborhood(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
AbstractNeighborhoodCursor<T> - Class in net.imglib2.algorithm.region.localneighborhood
 
AbstractNeighborhoodCursor(AbstractNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhoodCursor
 
AbstractNumericComposite<T extends NumericType<T>,C extends AbstractNumericComposite<T,C>> - Class in net.imglib2.view.composite
Abstract base class for a vector of NumericType scalars.
AbstractNumericComposite(RandomAccess<T>, int) - Constructor for class net.imglib2.view.composite.AbstractNumericComposite
 
AbstractOutOfBoundsMirror<T> - Class in net.imglib2.outofbounds
Abstract implementation of shared functions for mirroring out of bounds.
AbstractOutOfBoundsMirror(AbstractOutOfBoundsMirror<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
AbstractOutOfBoundsMirror(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
AbstractOutOfBoundsValue<T extends Type<T>> - Class in net.imglib2.outofbounds
 
AbstractOutOfBoundsValue(AbstractOutOfBoundsValue<T>) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
AbstractOutOfBoundsValue(F) - Constructor for class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
AbstractPermutationTransform - Class in net.imglib2.transform.integer.permutation
Bijective integer transform mapping between integer coordinates in [0,n-1].
AbstractPermutationTransform(int[]) - Constructor for class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
AbstractPositionableTransform<LocalizablePositionable extends Localizable & Positionable> - Class in net.imglib2.position.transform
A RealPositionable that drives a Positionable to somehow derived discrete coordinates.
AbstractPositionableTransform(LocalizablePositionable) - Constructor for class net.imglib2.position.transform.AbstractPositionableTransform
 
AbstractProjector2D - Class in net.imglib2.display.projector
Base class for 2D projectors.
AbstractProjector2D(int) - Constructor for class net.imglib2.display.projector.AbstractProjector2D
initializes a reference point with the specified number of dimensions.
AbstractRealInterval - Class in net.imglib2
Implementation of the RealInterval interface.
AbstractRealInterval(int) - Constructor for class net.imglib2.AbstractRealInterval
Creates an n-dimensional AbstractInterval with min and max = 0n.
AbstractRealInterval(RealInterval) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval using an existing RealInterval
AbstractRealInterval(double[], double[]) - Constructor for class net.imglib2.AbstractRealInterval
Creates a new AbstractRealInterval from min and max coordinates
AbstractRealLocalizable - Class in net.imglib2
An abstract class that implements the RealLocalizable interface using an array of doubles to maintain position
AbstractRealLocalizable(int) - Constructor for class net.imglib2.AbstractRealLocalizable
 
AbstractRealLocalizable(double[]) - Constructor for class net.imglib2.AbstractRealLocalizable
Protected constructor that re-uses the passed position array.
AbstractRealTransformSequence<R extends RealTransform> - Class in net.imglib2.realtransform
Shared properties of RealTransformSequence and InvertibleRealTransformSequence, sequences of something that extends RealTransforms.
AbstractRealTransformSequence() - Constructor for class net.imglib2.realtransform.AbstractRealTransformSequence
 
AbstractRealType<T extends AbstractRealType<T>> - Class in net.imglib2.type.numeric.real
TODO
AbstractRealType() - Constructor for class net.imglib2.type.numeric.real.AbstractRealType
 
AbstractRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AbstractRegionOfInterest(int) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest
Deprecated.
 
AbstractRegionOfInterest.AROIRandomAccess - Class in net.imglib2.roi
Deprecated.
The AROIRandomAccess inner class implements the random access part of the ROI, allowing random sampling of pixel membership in the ROI.
AbstractRenderer<A> - Class in net.imglib2.ui
Render source data into a BufferedImage and provide this to a RenderTarget.
AbstractRenderer(AffineTransformType<A>, RenderTarget, PainterThread) - Constructor for class net.imglib2.ui.AbstractRenderer
 
AbstractScale - Class in net.imglib2.realtransform
n-d arbitrary scaling.
AbstractScale(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractScale
 
AbstractScale(double...) - Constructor for class net.imglib2.realtransform.AbstractScale
 
AbstractShearTransform - Class in net.imglib2.transform.integer.shear
Most simple case of a shear transform that just implements for a integer valued coordinate: coordinate[ shearDimension ] += coordinate[ referenceDimension ] (forward) coordinate[ shearDimension ] -= coordinate[ referenceDimension ] (backward) This abstract class holds the inverse and implements applyInverse in terms of inverse.apply
AbstractShearTransform(int, int, int) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
 
AbstractShearTransform(int, int, int, AbstractShearTransform) - Constructor for class net.imglib2.transform.integer.shear.AbstractShearTransform
 
AbstractShortArray<A extends AbstractShortArray<A>> - Class in net.imglib2.img.basictypeaccess.array
 
AbstractShortArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
AbstractShortArray(short[]) - Constructor for class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
AbstractSimpleRenderer<A extends AffineGet & Concatenable<AffineGet>> - Class in net.imglib2.ui
A Renderer that uses multiple threads (if desired) and double-buffering (if desired).
AbstractSimpleRenderer(AffineTransformType<A>, RenderTarget, PainterThread, boolean, int) - Constructor for class net.imglib2.ui.AbstractSimpleRenderer
 
AbstractTranslation - Class in net.imglib2.realtransform
n-d translation.
AbstractTranslation(double[], RealPoint[]) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractTranslation(int) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractTranslation(double...) - Constructor for class net.imglib2.realtransform.AbstractTranslation
 
AbstractVolatileByteArray<A extends AbstractVolatileByteArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileByteArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
AbstractVolatileByteArray(byte[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
AbstractVolatileCharArray<A extends AbstractVolatileCharArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileCharArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
AbstractVolatileCharArray(char[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
AbstractVolatileDoubleArray<A extends AbstractVolatileDoubleArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileDoubleArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
AbstractVolatileDoubleArray(double[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
AbstractVolatileFloatArray<A extends AbstractVolatileFloatArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileFloatArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
AbstractVolatileFloatArray(float[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
AbstractVolatileIntArray<A extends AbstractVolatileIntArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileIntArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
AbstractVolatileIntArray(int[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
AbstractVolatileLongArray<A extends AbstractVolatileLongArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileLongArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
AbstractVolatileLongArray(long[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
AbstractVolatileNumericType<N extends NumericType<N>,T extends AbstractVolatileNumericType<N,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileNumericTypes that wrap a NumericType that is either VALID or INVALID.
AbstractVolatileNumericType(N, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
AbstractVolatileNumericType(N) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
AbstractVolatileRealType<R extends RealType<R>,T extends AbstractVolatileRealType<R,T>> - Class in net.imglib2.type.volatiles
Abstract base class for VolatileRealTypes that wrap RealType.
AbstractVolatileRealType(R, boolean) - Constructor for class net.imglib2.type.volatiles.AbstractVolatileRealType
 
AbstractVolatileShortArray<A extends AbstractVolatileShortArray<A>> - Class in net.imglib2.img.basictypeaccess.volatiles.array
 
AbstractVolatileShortArray(int, boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
AbstractVolatileShortArray(short[], boolean) - Constructor for class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
AbstractWrappedInterval<I extends Interval> - Class in net.imglib2
Convenient base class for IterableIntervals, RandomAccessibleIntervals, etc that forward the Interval interface to, for example, their source accessible.
AbstractWrappedInterval(I) - Constructor for class net.imglib2.AbstractWrappedInterval
 
AbstractWrappedRealInterval<I extends RealInterval> - Class in net.imglib2
Convenient base class for IterableRealIntervals, etc that forward the RealInterval interface to, for example, their source accessible.
AbstractWrappedRealInterval(I) - Constructor for class net.imglib2.AbstractWrappedRealInterval
 
accA - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accB - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accept(T, U) - Method in interface net.imglib2.algorithm.fill.Filter
 
accept(T) - Method in interface net.imglib2.algorithm.tree.TreeUtils.Consumer
 
accessAxes - Variable in class net.imglib2.view.HyperSlicesView
 
accessBinValues - Variable in class net.imglib2.script.algorithm.integral.histogram.Histogram
 
accG - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accR - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
accumulate(int) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
accumulator - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
ACos - Class in net.imglib2.script.math
TODO
ACos(IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.ACos
 
ACos(IFunction) - Constructor for class net.imglib2.script.math.ACos
 
ACos(Number) - Constructor for class net.imglib2.script.math.ACos
 
add(T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
add(int, T1) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
add(Point, T) - Method in class net.imglib2.PointSampleList
 
add(RealPoint, T) - Method in class net.imglib2.RealPointSampleList
 
add(R) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
Append a RealTransform to the sequence.
add(T) - Method in class net.imglib2.roi.labeling.LabelingType
 
add(Localizable) - Method in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
Accumulate the given coordinates.
Add - Class in net.imglib2.script.math
TODO
Add(IterableRealInterval<R>, IterableRealInterval<S>) - Constructor for class net.imglib2.script.math.Add
 
Add(IFunction, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Add
 
Add(IterableRealInterval<R>, IFunction) - Constructor for class net.imglib2.script.math.Add
 
Add(IFunction, IFunction) - Constructor for class net.imglib2.script.math.Add
 
Add(IterableRealInterval<R>, Number) - Constructor for class net.imglib2.script.math.Add
 
Add(Number, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Add
 
Add(IFunction, Number) - Constructor for class net.imglib2.script.math.Add
 
Add(Number, IFunction) - Constructor for class net.imglib2.script.math.Add
 
Add(Number, Number) - Constructor for class net.imglib2.script.math.Add
 
Add(Object...) - Constructor for class net.imglib2.script.math.Add
 
add(BitType) - Method in class net.imglib2.type.logic.BitType
 
add(T) - Method in class net.imglib2.type.numeric.AbstractARGBDoubleType
 
add(ARGBType) - Method in class net.imglib2.type.numeric.ARGBType
 
add(T) - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
add(ComplexFloatType) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
add(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
add(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
add(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
add(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
add(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
add(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
add(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
add(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
add(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
add(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
Add<T> - Interface in net.imglib2.type.operators
 
add(T) - Method in interface net.imglib2.type.operators.Add
 
add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileNumericType
 
add(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
add(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
set c = a + b.
add(double[][], double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A + B.
add(double) - Method in class net.imglib2.util.RealSum
Add an element to the sum.
add(C) - Method in class net.imglib2.view.composite.AbstractNumericComposite
 
addAll(Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
addAll(int, Collection<? extends T1>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
addAll(Collection<? extends T>) - Method in class net.imglib2.roi.labeling.LabelingType
 
addData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Counts additional data contained in a given iterable collection.
addData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts additional data contained in a given iterable collection.
addData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts additional data contained in a given iterable collection.
addDimension(RealRandomAccessible<T>) - Static method in class net.imglib2.realtransform.RealViews
Add a dimension to a RealRandomAccessible.
addDimension(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
Create view which adds a dimension to the source RandomAccessible .
addDimension(RandomAccessibleInterval<T>, long, long) - Static method in class net.imglib2.view.Views
Create view which adds a dimension to the source RandomAccessibleInterval.
addEllipticGaussianSpotToImage(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
addGaussianNoiseToImage(RandomAccessibleInterval<T>, double) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
addGaussianSpotToImage(RandomAccessibleInterval<T>, double[]) - Static method in class net.imglib2.algorithm.localization.LocalizationUtils
 
addHandler(Object) - Method in interface net.imglib2.ui.InteractiveDisplayCanvas
Add new event handler.
addHandler(Object) - Method in class net.imglib2.ui.InteractiveDisplayCanvasComponent
Add new event handler.
addOverlayRenderer(OverlayRenderer) - Method in interface net.imglib2.ui.InteractiveDisplayCanvas
Add an OverlayRenderer that draws on top of the current buffered image.
addOverlayRenderer(OverlayRenderer) - Method in class net.imglib2.ui.InteractiveDisplayCanvasComponent
Add an OverlayRenderer that draws on top of the current buffered image.
addPosition(Localizable) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent
Add a pixel to the set of pixels represented by this component.
addPosition(Localizable) - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
Append a pixel location to the list.
addSlice(String, ImageProcessor) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
Adds the image in 'ip' to the end of the stack.
addSlice(String, ImageProcessor, int) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
Adds the image in 'ip' to the stack following slice 'n'.
addTransformListener(TransformListener<A>) - Method in interface net.imglib2.ui.InteractiveDisplayCanvas
Add a TransformListener to notify about view transformation changes.
addTransformListener(TransformListener<A>) - Method in class net.imglib2.ui.InteractiveDisplayCanvasComponent
Add a TransformListener to notify about view transformation changes.
addUnsignedShortSlice(String, Object) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
Obsolete.
addVertex(int, RealLocalizable) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
Insert a point into the polygon at the given index
affine(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews
See a RealRandomAccessible as a RandomAccessible transformed by an AffineGet.
affine - Variable in class net.imglib2.ui.TransformEventHandler2D
Current source to screen transform.
affine - Variable in class net.imglib2.ui.TransformEventHandler3D
Current source to screen transform.
Affine2D<N extends NumericType<N>> - Class in net.imglib2.script.algorithm
TODO
Affine2D(Object, Number, Number, Number, Number, Number, Number) - Constructor for class net.imglib2.script.algorithm.Affine2D
Affine transform the image with the best interpolation mode available.
Affine2D(Object, Number, Number, Number, Number, Number, Number, AbstractAffine3D.Mode, Number) - Constructor for class net.imglib2.script.algorithm.Affine2D
Affine transform the image with the best interpolation mode available.
Affine2D(Object, AffineTransform) - Constructor for class net.imglib2.script.algorithm.Affine2D
 
Affine2D(Object, AffineTransform, AbstractAffine3D.Mode) - Constructor for class net.imglib2.script.algorithm.Affine2D
 
Affine2D(Object, AffineTransform, Number) - Constructor for class net.imglib2.script.algorithm.Affine2D
 
Affine2D(Object, AffineTransform, AbstractAffine3D.Mode, Number) - Constructor for class net.imglib2.script.algorithm.Affine2D
 
Affine2D(Object, float, float, float, float, float, float, AbstractAffine3D.Mode, OutOfBoundsFactory<N, Img<N>>) - Constructor for class net.imglib2.script.algorithm.Affine2D
 
Affine3D<T extends NumericType<T>> - Class in net.imglib2.script.algorithm
Performs a mathematically correct transformation of an image.
Affine3D(Img<T>, float[], AbstractAffine3D.Mode) - Constructor for class net.imglib2.script.algorithm.Affine3D
TODO
Affine3D(Object, float[], AbstractAffine3D.Mode, Number) - Constructor for class net.imglib2.script.algorithm.Affine3D
 
Affine3D(Object, float[], AbstractAffine3D.Mode, OutOfBoundsFactory<T, Img<T>>) - Constructor for class net.imglib2.script.algorithm.Affine3D
 
Affine3D(Object, float, float, float, float, float, float, AbstractAffine3D.Mode, Number) - Constructor for class net.imglib2.script.algorithm.Affine3D
 
Affine3D(Object, float, float, float, float, float, float, AbstractAffine3D.Mode, OutOfBoundsFactory<T, Img<T>>) - Constructor for class net.imglib2.script.algorithm.Affine3D
 
affineDragStart - Variable in class net.imglib2.ui.TransformEventHandler2D
Copy of current transform when mouse dragging started.
affineDragStart - Variable in class net.imglib2.ui.TransformEventHandler3D
Copy of current transform when mouse dragging started.
AffineGet - Interface in net.imglib2.realtransform
An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be accessed via row and column index.
AffineMatrix2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
AffineMatrix3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
AffineMatrix3D(double...) - Constructor for class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
AffineRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
AffineRandomAccess(AffineRandomAccessible<T, R>.AffineRandomAccess) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
AffineRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform
A RandomAccessible whose samples are generated by rasterizing a RealRandomAccessible transformed by an affine transformation.
AffineRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRandomAccessible
 
AffineRandomAccessible.AffineRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.
affineReal(RealRandomAccessible<T>, AffineGet) - Static method in class net.imglib2.realtransform.RealViews
See a RealRandomAccessible as transformed by an AffineGet .
AffineRealRandomAccess() - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
AffineRealRandomAccessible<T,R extends AffineGet> - Class in net.imglib2.realtransform
A RealRandomAccessible whose samples are generated from a RealRandomAccessible transformed by an affine transformation.
AffineRealRandomAccessible(RealRandomAccessible<T>, R) - Constructor for class net.imglib2.realtransform.AffineRealRandomAccessible
 
AffineRealRandomAccessible.AffineRealRandomAccess - Class in net.imglib2.realtransform
RealRandomAccess that generates its samples from a source RealRandomAccessible at coordinates transformed by a RealTransform.
AffineSet - Interface in net.imglib2.realtransform
An n-dimensional affine transformation whose n×( n+1) affine transformation matrix can be set via row and column index and from double arrays.
AffineTransform - Class in net.imglib2.realtransform
An n-dimensional affine transformation.
AffineTransform(int) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(Matrix, double[]) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(Matrix) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform(AffineTransform) - Constructor for class net.imglib2.realtransform.AffineTransform
 
AffineTransform2D - Class in net.imglib2.realtransform
2d-affine transformation.
AffineTransform2D() - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D(AffineTransform2D.AffineMatrix2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D(AffineTransform2D) - Constructor for class net.imglib2.realtransform.AffineTransform2D
 
AffineTransform2D.AffineMatrix2D - Class in net.imglib2.realtransform
 
AffineTransform3D - Class in net.imglib2.realtransform
3d-affine transformation.
AffineTransform3D() - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D(AffineTransform3D.AffineMatrix3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D(AffineTransform3D) - Constructor for class net.imglib2.realtransform.AffineTransform3D
 
AffineTransform3D.AffineMatrix3D - Class in net.imglib2.realtransform
 
AffineTransformType<A> - Interface in net.imglib2.ui
Provide create and set operations on (affine) transforms of type A.
AffineTransformType2D - Class in net.imglib2.ui
AffineTransformType2D() - Constructor for class net.imglib2.ui.AffineTransformType2D
 
AffineTransformType3D - Class in net.imglib2.ui
AffineTransformType3D() - Constructor for class net.imglib2.ui.AffineTransformType3D
 
age - Variable in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
Algorithm - Interface in net.imglib2.algorithm
TODO This interface should extend Runnable
AlgorithmUtil - Class in net.imglib2.script.algorithm.fn
TODO
AlgorithmUtil() - Constructor for class net.imglib2.script.algorithm.fn.AlgorithmUtil
 
AllConnectedComponents - Class in net.imglib2.algorithm.labeling
Deprecated.
AllConnectedComponents() - Constructor for class net.imglib2.algorithm.labeling.AllConnectedComponents
Deprecated.
 
AllConnectedComponents.PositionStack - Class in net.imglib2.algorithm.labeling
Deprecated.
 
allDone - Variable in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
allowedToMoveInDim - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
allowMaximaTolerance - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
ALPHA - Static variable in interface net.imglib2.display.ColorTable
 
alpha - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
Alpha - Class in net.imglib2.script.color
TODO
Alpha(IterableRealInterval<? extends ARGBType>) - Constructor for class net.imglib2.script.color.Alpha
Extract the alpha channel of each pixel, in the range [0, 255].
alpha(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
and(RegionOfInterest) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Make the region the union of the current and this
And - Class in net.imglib2.script.math
TODO
And(IterableRealInterval<S>, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.And
 
And(IFunction, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.And
 
And(IterableRealInterval<R>, IFunction) - Constructor for class net.imglib2.script.math.And
 
And(IFunction, IFunction) - Constructor for class net.imglib2.script.math.And
 
And(IterableRealInterval<R>, Number) - Constructor for class net.imglib2.script.math.And
 
And(Number, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.And
 
And(IFunction, Number) - Constructor for class net.imglib2.script.math.And
 
And(Number, IFunction) - Constructor for class net.imglib2.script.math.And
 
And(Number, Number) - Constructor for class net.imglib2.script.math.And
 
And(Object...) - Constructor for class net.imglib2.script.math.And
 
and(T) - Method in interface net.imglib2.type.BooleanType
 
and(BitType) - Method in class net.imglib2.type.logic.BitType
 
and(boolean) - Method in class net.imglib2.type.logic.BoolType
 
and(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
angleFromR(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the angle of rotation from a rotation matrix.
AngleRegionOfInterest - Class in net.imglib2.roi
Deprecated.
AngleRegionOfInterest() - Constructor for class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
AngleRegionOfInterest(double[], double[], double[]) - Constructor for class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractScale
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AbstractTranslation
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.AffineTransform3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InversePerspective3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.InverseRealTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Perspective3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
apply(double[], double[]) - Method in interface net.imglib2.realtransform.RealTransform
Apply the RealTransform to a source vector to obtain a target vector.
apply(float[], float[]) - Method in interface net.imglib2.realtransform.RealTransform
Apply the RealTransform to a source vector to obtain a target vector.
apply(RealLocalizable, RealPositionable) - Method in interface net.imglib2.realtransform.RealTransform
Apply the RealTransform to a source RealLocalizable to obtain a target RealPositionable.
apply() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
apply() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Scale3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation2D
 
apply(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D
 
apply(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D
 
apply(RealLocalizable, RealPositionable) - Method in class net.imglib2.realtransform.Translation3D
 
apply(IFunction, R, int) - Static method in class net.imglib2.script.math.Compute
Execute the given IFunction, which runs for each pixel, and store the results in an Image with the type defined by , which has to be a subclass of RealType.
apply(IFunction, ARGBType, int) - Static method in class net.imglib2.script.math.Compute
Execute the given op IFunction, which runs for each pixel, and store the results in an Image of type ARGBType.
apply(long[], long[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.MixedTransform
 
apply(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.SlicingTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
apply(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
 
apply(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
 
apply(Localizable, Positionable) - Method in class net.imglib2.transform.InverseTransform
 
apply(long[], long[]) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source vector to obtain a target vector.
apply(int[], int[]) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source vector to obtain a target vector.
apply(Localizable, Positionable) - Method in interface net.imglib2.transform.Transform
Apply the Transform to a source Localizable to obtain a target Positionable.
applyChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractScale
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AbstractTranslation
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.AffineTransform3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.HomographyTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InversePerspective3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InverseRealTransform
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InverseRealTransform
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InverseRealTransform
 
applyInverse(double[], double[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(float[], float[]) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(RealPositionable, RealLocalizable) - Method in interface net.imglib2.realtransform.InvertibleRealTransform
Apply the inverse transform to a target RealLocalizable to obtain a source RealPositionable.
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Perspective3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Scale3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation2D
 
applyInverse(double[], double[]) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(float[], float[]) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(RealPositionable, RealLocalizable) - Method in class net.imglib2.realtransform.Translation3D
 
applyInverse(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.PermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.SequentializeTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
applyInverse(long[], long[]) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(int[], int[]) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(Positionable, Localizable) - Method in class net.imglib2.transform.InverseTransform
 
applyInverse(long[], long[]) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(int[], int[]) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target vector to obtain a source vector.
applyInverse(Positionable, Localizable) - Method in interface net.imglib2.transform.InvertibleTransform
Apply the inverse transform to a target Localizable to obtain a source Positionable.
applyInverseChecked(int) - Method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
ARegionFn<T extends RealType<T>> - Class in net.imglib2.script.region.fn
TODO
ARegionFn(Img<T>, RandomAccess<T>, long) - Constructor for class net.imglib2.script.region.fn.ARegionFn
 
argb(int) - Method in class net.imglib2.display.AbstractArrayColorTable
 
argb(int) - Method in interface net.imglib2.display.ArrayColorTable
Converts the tuple at the given position into a packed ARGB value.
ARGB_COLOR_MODEL - Static variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
ARGB_COLOR_MODEL - Static variable in class net.imglib2.ui.util.GuiUtil
 
ARGBARGBDoubleConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter
 
ARGBARGBDoubleConverter() - Constructor for class net.imglib2.converter.ARGBARGBDoubleConverter
 
argbChannel(RandomAccessibleInterval<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
Create a WriteConvertedRandomAccessibleInterval to one of the four channels encoded in a RandomAccessibleInterval of ARGBType.
argbChannel(RandomAccessible<ARGBType>, int) - Static method in class net.imglib2.converter.Converters
Create a WriteConvertedRandomAccessible to one of the four channels encoded in a RandomAccessible of ARGBType.
argbChannels(RandomAccessibleInterval<ARGBType>) - Static method in class net.imglib2.converter.Converters
Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.
argbChannels(RandomAccessibleInterval<ARGBType>, int...) - Static method in class net.imglib2.converter.Converters
Create an (n+1)-dimensional RandomAccessible of an n-dimensional RandomAccessible that maps the four channels encoded in ARGBType into a dimension.
ARGBChannelSamplerConverter - Class in net.imglib2.converter.readwrite
Access the on channel of an ARGBType as an UnsignedByteType.
ARGBChannelSamplerConverter(int) - Constructor for class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
 
ARGBDoubleARGBConverter<T extends AbstractARGBDoubleType<?>> - Class in net.imglib2.converter
 
ARGBDoubleARGBConverter() - Constructor for class net.imglib2.converter.ARGBDoubleARGBConverter
 
ARGBDoubleType - Class in net.imglib2.type.numeric
 
ARGBDoubleType() - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
 
ARGBDoubleType(double, double, double, double) - Constructor for class net.imglib2.type.numeric.ARGBDoubleType
 
ARGBImage - Class in net.imglib2.script.img
TODO
ARGBImage(List<Number>) - Constructor for class net.imglib2.script.img.ARGBImage
 
ARGBImage(long[]) - Constructor for class net.imglib2.script.img.ARGBImage
 
ARGBImage(long[], int[]) - Constructor for class net.imglib2.script.img.ARGBImage
 
argbs(long...) - Static method in class net.imglib2.img.array.ArrayImgs
argbs(int[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ARGBType, IntArray> reusing a passed int[] array.
argbs(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ARGBType, IntAccess> using a IntAccess passed as argument.
argbs(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
argbs(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
ARGBScreenImage - Class in net.imglib2.display.screenimage.awt
 
ARGBScreenImage(int, int) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
ARGBScreenImage(int, int, IntArray) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
Create an Image with data.
ARGBScreenImage(int, int, int[]) - Constructor for class net.imglib2.display.screenimage.awt.ARGBScreenImage
Create an Image with data.
ARGBType - Class in net.imglib2.type.numeric
A native NumericType that encodes four channels at unsigned byte precision into one 32bit signed integer which is the format used in most display oriented image processing libraries such as AWT or ImageJ.
ARGBType(NativeImg<?, ? extends IntAccess>) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(int) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType(IntAccess) - Constructor for class net.imglib2.type.numeric.ARGBType
 
ARGBType() - Constructor for class net.imglib2.type.numeric.ARGBType
 
AROIClippedIterableInterval(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIClippedIterableInterval
Deprecated.
 
AROICursor(AbstractIterableRegionOfInterest.AROIIterableInterval<T>.AROICursor) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
AROICursor() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
AROIIterableInterval(RandomAccessible<T>) - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
AROIIterationOrder() - Constructor for class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterationOrder
Deprecated.
 
AROIRandomAccess(AbstractRegionOfInterest.AROIRandomAccess) - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
AROIRandomAccess() - Constructor for class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
ArrayColorTable<T> - Interface in net.imglib2.display
Interface for all ColorTable implementations that use an array to store their color table information.
ArrayCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayCursor(ArrayCursor<T>) - Constructor for class net.imglib2.img.array.ArrayCursor
 
ArrayCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayCursor
 
ArrayDataAccess<A> - Interface in net.imglib2.img.basictypeaccess.array
Trivial interface for primitive array based data access implementations that can replicate themselves and return the underlying array.
ArrayImg<T extends NativeType<T>,A> - Class in net.imglib2.img.array
This Img stores an image in a single linear array of basic types.
ArrayImg(A, long[], Fraction) - Constructor for class net.imglib2.img.array.ArrayImg
 
ArrayImgAWTScreenImage<T extends NativeType<T>,A> - Class in net.imglib2.display.screenimage.awt
An AWTScreenImage that is an ArrayImg.
ArrayImgAWTScreenImage(ArrayImg<T, A>) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
ArrayImgAWTScreenImage(T, A, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
ArrayImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.array
 
ArrayImgFactory() - Constructor for class net.imglib2.img.array.ArrayImgFactory
 
ArrayImgs - Class in net.imglib2.img.array
Convenience factory methods for creation of ArrayImg instances with the most common pixel Type variants.
ArrayImgXYByteProjector<A extends GenericByteType<A>> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ByteType ArrayImg.
ArrayImgXYByteProjector(ArrayImg<A, ByteArray>, ArrayImg<UnsignedByteType, ByteArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYByteProjector
Normalizes an ArrayImg and writes the result into target.
ArrayImgXYShortProjector<A extends GenericShortType<A>> - Class in net.imglib2.display.projector.specialized
Fast implementation of a AbstractProjector2D that selects a 2D data plain from an ShortType ArrayImg.
ArrayImgXYShortProjector(ArrayImg<A, ShortArray>, ArrayImg<UnsignedShortType, ShortArray>, double, double) - Constructor for class net.imglib2.display.projector.specialized.ArrayImgXYShortProjector
Normalizes an ArrayImg and writes the result into target.
ArrayLocalizingCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
Localizing Cursor on an ArrayImg.
ArrayLocalizingCursor(ArrayLocalizingCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
TODO Javadoc
ArrayLocalizingCursor(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayLocalizingCursor
TODO Javadoc
ArrayLocalizingSubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayLocalizingSubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
TODO Javadoc
ArrayLocalizingSubIntervalCursor(ArrayLocalizingSubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
TODO Javadoc
ArrayRandomAccess<T extends NativeType<T>> - Class in net.imglib2.img.array
ArrayRandomAccess(ArrayRandomAccess<T>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
 
ArrayRandomAccess(ArrayImg<T, ?>) - Constructor for class net.imglib2.img.array.ArrayRandomAccess
 
ArraySubIntervalCursor<T extends NativeType<T>> - Class in net.imglib2.img.array
ArraySubIntervalCursor(ArraySubIntervalCursor<T>) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
TODO Javadoc
ArraySubIntervalCursor(ArrayImg<T, ?>, int, int) - Constructor for class net.imglib2.img.array.ArraySubIntervalCursor
TODO Javadoc
asArray(int, double) - Static method in class net.imglib2.script.algorithm.fn.AlgorithmUtil
Copy the given double value into each index of a double[] array of length .
asChart() - Method in class net.imglib2.script.analysis.Histogram
 
asChart(boolean) - Method in class net.imglib2.script.analysis.Histogram
Return the JFreeChart with this histogram, and as a side effect, show it in a JFrame that provides the means to edit the dimensions and also the plot properties via a popup menu.
asDoubleArray(Collection<Number>) - Static method in class net.imglib2.script.algorithm.fn.AlgorithmUtil
 
asDoubleArray(float[]) - Static method in class net.imglib2.script.algorithm.fn.AlgorithmUtil
 
asImage() - Method in class net.imglib2.script.analysis.BarChart
 
asImage(JFreeChart) - Static method in class net.imglib2.script.analysis.ChartUtils
 
asImage(JFreeChart, int, int) - Static method in class net.imglib2.script.analysis.ChartUtils
 
asImage() - Method in class net.imglib2.script.analysis.Histogram
 
asImage() - Method in class net.imglib2.script.color.fn.ColorFunction
 
asImage(int) - Method in class net.imglib2.script.color.fn.ColorFunction
 
asImage() - Method in class net.imglib2.script.math.fn.FloatImageOperation
Evaluate this operation as an Image<FloatType>.
asImage(int) - Method in class net.imglib2.script.math.fn.FloatImageOperation
Evaluate this operation as an Image<FloatType> using the defined number of parallel threads.
asImage() - Method in interface net.imglib2.script.math.fn.ImageComputation
 
asImage(int) - Method in interface net.imglib2.script.math.fn.ImageComputation
 
ASin - Class in net.imglib2.script.math
TODO
ASin(IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.ASin
 
ASin(IFunction) - Constructor for class net.imglib2.script.math.ASin
 
ASin(Number) - Constructor for class net.imglib2.script.math.ASin
 
asLongArray(Collection<? extends Number>) - Static method in class net.imglib2.script.algorithm.fn.AlgorithmUtil
 
asType(Number) - Static method in class net.imglib2.script.math.fn.NumberFunction
Defaults to DoubleType, and treats Byte as unsigned.
ATan - Class in net.imglib2.script.math
TODO
ATan(IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.ATan
 
ATan(IFunction) - Constructor for class net.imglib2.script.math.ATan
 
ATan(Number) - Constructor for class net.imglib2.script.math.ATan
 
ATan2 - Class in net.imglib2.script.math
TODO
ATan2(IterableRealInterval<S>, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.ATan2
 
ATan2(IFunction, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.ATan2
 
ATan2(IterableRealInterval<R>, IFunction) - Constructor for class net.imglib2.script.math.ATan2
 
ATan2(IFunction, IFunction) - Constructor for class net.imglib2.script.math.ATan2
 
ATan2(IterableRealInterval<R>, Number) - Constructor for class net.imglib2.script.math.ATan2
 
ATan2(Number, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.ATan2
 
ATan2(IFunction, Number) - Constructor for class net.imglib2.script.math.ATan2
 
ATan2(Number, IFunction) - Constructor for class net.imglib2.script.math.ATan2
 
ATan2(Number, Number) - Constructor for class net.imglib2.script.math.ATan2
 
Average - Class in net.imglib2.script.math
TODO
Average(IterableRealInterval<S>, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Average
 
Average(IFunction, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Average
 
Average(IterableRealInterval<R>, IFunction) - Constructor for class net.imglib2.script.math.Average
 
Average(IFunction, IFunction) - Constructor for class net.imglib2.script.math.Average
 
Average(IterableRealInterval<R>, Number) - Constructor for class net.imglib2.script.math.Average
 
Average(Number, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Average
 
Average(IFunction, Number) - Constructor for class net.imglib2.script.math.Average
 
Average(Number, IFunction) - Constructor for class net.imglib2.script.math.Average
 
Average(Number, Number) - Constructor for class net.imglib2.script.math.Average
 
Average(Object...) - Constructor for class net.imglib2.script.math.Average
 
average(float[]) - Static method in class net.imglib2.util.Util
 
average(double[]) - Static method in class net.imglib2.util.Util
 
averageDouble(List<Double>) - Static method in class net.imglib2.util.Util
 
averageFloat(List<Float>) - Static method in class net.imglib2.util.Util
 
AWTScreenImage - Interface in net.imglib2.display.screenimage.awt
A ScreenImage that produces AWT Image objects.
AWTScreenImageUtil - Class in net.imglib2.display.screenimage.awt
Utility class to create AWTScreenImages.
AWTScreenImageUtil() - Constructor for class net.imglib2.display.screenimage.awt.AWTScreenImageUtil
 
axes - Variable in class net.imglib2.view.HyperSlice
 
axis - Variable in class net.imglib2.ui.TransformEventHandler3D
Current rotation axis for rotating with keyboard, indexed x->0, y->1, z->2.
axisFromR(double[][], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute the axis of rotation from a rotation matrix.

B

b - Variable in class net.imglib2.realtransform.ThinplateSplineTransform
 
b() - Method in class net.imglib2.script.filter.Paste
 
b() - Method in class net.imglib2.script.math.fn.BinaryOperation
 
b - Variable in class net.imglib2.type.numeric.ARGBDoubleType
 
b - Variable in class net.imglib2.util.ValuePair
 
b - Variable in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
background - Variable in class net.imglib2.converter.VolatileRealTypeARGBConverter
 
Bandpass<T extends NumericType<T>> - Class in net.imglib2.algorithm.fft
Deprecated.
use FFT instead
Bandpass(RandomAccessibleInterval<T>, int, int, ImgFactory<T>) - Constructor for class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
Bandpass(Img<T>, int, int) - Constructor for class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
BandpassFilter<T extends RealType<T>> - Class in net.imglib2.script.algorithm
TODO
BandpassFilter(Img<T>, int, int) - Constructor for class net.imglib2.script.algorithm.BandpassFilter
 
BandpassFilter(IFunction, int, int) - Constructor for class net.imglib2.script.algorithm.BandpassFilter
 
BarChart - Class in net.imglib2.script.analysis
TODO
BarChart(Collection<? extends Number>) - Constructor for class net.imglib2.script.analysis.BarChart
 
BarChart(Collection<? extends Number>, String, String, String) - Constructor for class net.imglib2.script.analysis.BarChart
 
BarChart(Map<? extends Number, ? extends Number>) - Constructor for class net.imglib2.script.analysis.BarChart
 
BarChart(Map<? extends Number, ? extends Number>, String, String, String) - Constructor for class net.imglib2.script.analysis.BarChart
 
BasePairBitType - Class in net.imglib2.type.label
Representation of base pairs using 3 bits per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.
BasePairBitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType() - Constructor for class net.imglib2.type.label.BasePairBitType
 
BasePairBitType.Base - Enum in net.imglib2.type.label
 
BasePairCharType - Class in net.imglib2.type.label
Representation of base pairs using one char per entry, supported characters: gap, N, A, T, G, C, U Bases are handled using the BasePairBitType.Base enumeration.
BasePairCharType(NativeImg<?, ? extends CharAccess>) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(BasePairBitType.Base) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType(char) - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairCharType() - Constructor for class net.imglib2.type.label.BasePairCharType
 
BasePairType<T extends BasePairType<T>> - Interface in net.imglib2.type
TODO
baseToValue() - Method in interface net.imglib2.type.BasePairType
 
baseToValue() - Method in class net.imglib2.type.label.BasePairBitType
 
baseToValue() - Method in class net.imglib2.type.label.BasePairCharType
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
bck(int) - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
 
bck(int) - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
bck(int) - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
bck(int) - Method in class net.imglib2.img.array.ArrayRandomAccess
 
bck(int) - Method in class net.imglib2.img.cell.CellRandomAccess
 
bck(int) - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
bck(int) - Method in class net.imglib2.img.list.ListRandomAccess
 
bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
bck(int) - Method in class net.imglib2.img.planar.PlanarRandomAccess1D
 
bck(int) - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
bck(int) - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsValue
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
bck(int) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
bck(int) - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
bck(int) - Method in class net.imglib2.Point
 
bck(int) - Method in class net.imglib2.position.transform.AbstractPositionableTransform
 
bck(int) - Method in interface net.imglib2.Positionable
Move by -1 in one dimension.
bck(int) - Method in class net.imglib2.RealPoint
 
bck(int) - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
bck(int) - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
bck(int) - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
bck(int) - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
bck(int) - Method in class net.imglib2.roi.labeling.LabelRegion
 
bck(int) - Method in class net.imglib2.roi.labeling.LabelRegion.Origin
 
bck(int) - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
bck(int) - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
bck(int) - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
bck(int) - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
bck(int) - Method in class net.imglib2.view.MixedRandomAccess
 
bck(int) - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
bck(int) - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
bck(int) - Method in class net.imglib2.view.SlicingRandomAccess
 
bck(int) - Method in class net.imglib2.view.StackView.DefaultRA
 
bck(int) - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
bck(int) - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
bck(int) - Method in class net.imglib2.view.TransformRandomAccess
 
bck(int) - Method in class net.imglib2.view.TranslationRandomAccess
 
bckDim0() - Method in class net.imglib2.img.array.ArrayRandomAccess
Moves one step backward in dimension 0
beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsBorder
 
beforeMin - Variable in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
Benchmark - Interface in net.imglib2.algorithm
TODO
benchmark(int, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
Run a benchmark numRuns times and record the milliseconds taken for each run.
BenchmarkAlgorithm - Class in net.imglib2.algorithm
This is a convenience implementation of an algorithm that implements Benchmark and Algorithm so that less code has to be re-implemented.
BenchmarkAlgorithm() - Constructor for class net.imglib2.algorithm.BenchmarkAlgorithm
 
benchmarkAndPrint(int, boolean, Runnable) - Static method in class net.imglib2.util.BenchmarkHelper
Run a benchmark numRuns times and print the results to System.out .
BenchmarkHelper - Class in net.imglib2.util
Tools for setting up basic benchmarks.
BenchmarkHelper() - Constructor for class net.imglib2.util.BenchmarkHelper
 
BEST - Static variable in class net.imglib2.script.algorithm.fn.AbstractAffine3D
 
BEST - Static variable in class net.imglib2.script.algorithm.Resample
 
bestPoint - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
bestPoints - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
bestSquDistance - Variable in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
bestSquDistances - Variable in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
BinaryMaskRegionOfInterest<T extends BitType,I extends RandomAccessibleInterval<T>> - Class in net.imglib2.roi
Deprecated.
BinaryMaskRegionOfInterest(I) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
BinaryMaskRegionOfInterest.BMROIIterableInterval<TT extends Type<TT>> - Class in net.imglib2.roi
Deprecated.
 
BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor - Class in net.imglib2.roi
Deprecated.
The cursor works by managing a cursor from the original image.
BinaryMaskRegionOfInterest.BMROIIterationOrder - Class in net.imglib2.roi
Deprecated.
 
BinaryOperation - Class in net.imglib2.script.math.fn
 
BinaryOperation(IterableRealInterval<R>, IterableRealInterval<S>) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(IFunction, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(IterableRealInterval<R>, IFunction) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(IFunction, IFunction) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(IterableRealInterval<R>, Number) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(Number, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(IFunction, Number) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(Number, IFunction) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(Number, Number) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
 
BinaryOperation(Object...) - Constructor for class net.imglib2.script.math.fn.BinaryOperation
Compose: "fn(a1, fn(a2, fn(a3, fn(a4, a5))))".
BinMapper1d<T> - Interface in net.imglib2.histogram
An interface for defining a bin mapping algorithm.
Binning - Class in net.imglib2.util
Static utility methods to convert from a value to a bin, useful for dealing with histograms and LUTs.
Binning() - Constructor for class net.imglib2.util.Binning
 
bins - Variable in class net.imglib2.script.algorithm.integral.histogram.Histogram
 
binValue(long) - Method in class net.imglib2.script.algorithm.integral.histogram.Histogram
 
binValues - Variable in class net.imglib2.script.algorithm.integral.histogram.Histogram
 
bits(long...) - Static method in class net.imglib2.img.array.ArrayImgs
bits(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<BitType, LongAccess> using a LongAccess passed as argument.
bits(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
BitType - Class in net.imglib2.type.logic
TODO
BitType(NativeImg<?, ? extends LongAccess>) - Constructor for class net.imglib2.type.logic.BitType
 
BitType(boolean) - Constructor for class net.imglib2.type.logic.BitType
 
BitType(LongAccess) - Constructor for class net.imglib2.type.logic.BitType
 
BitType() - Constructor for class net.imglib2.type.logic.BitType
 
BlackTopHat - Class in net.imglib2.algorithm.morphology
Black top-hat (bottom-hat) transform for ImgLib2.
blackTopHat(Img<T>, List<Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
blackTopHat(Img<T>, List<Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a list of Shapes as a flat structuring element.
blackTopHat(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.
blackTopHat(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a Shape as a flat structuring element.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, List<Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, List<Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHat(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
blackTopHatInPlace(RandomAccessible<T>, Interval, List<Shape>, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a list of Shapes as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, List<Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a list of Shapes as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, on a RealType Img using a Shape as a flat structuring element.
blackTopHatInPlace(RandomAccessible<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.BlackTopHat
Performs the black top-hat (or bottom-hat) morphological operation, using a Shape as a flat structuring element.
BLUE - Static variable in interface net.imglib2.display.ColorTable
 
Blue - Class in net.imglib2.script.color
TODO
Blue(IterableRealInterval<? extends ARGBType>) - Constructor for class net.imglib2.script.color.Blue
Extract the blue channel of each pixel, in the range [0, 255].
blue(int) - Static method in class net.imglib2.type.numeric.ARGBType
 
BMROICursor() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
BMROIIterableInterval(RandomAccess<TT>) - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
BMROIIterationOrder() - Constructor for class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterationOrder
Deprecated.
 
BooleanNtree - Class in net.imglib2.img.sparse
BitAccess based on a Ntree.
BooleanNtree(long[], long[], boolean) - Constructor for class net.imglib2.img.sparse.BooleanNtree
 
BooleanType<T extends BooleanType<T>> - Interface in net.imglib2.type
TODO
BoolType - Class in net.imglib2.type.logic
A BooleanType wrapping a single primitive boolean variable.
BoolType() - Constructor for class net.imglib2.type.logic.BoolType
 
BoolType(boolean) - Constructor for class net.imglib2.type.logic.BoolType
 
BoolType(T) - Constructor for class net.imglib2.type.logic.BoolType
 
boundary - Variable in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
Boundary<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
An IterableRegion of the boundary pixels of a source boolean RandomAccessibleInterval.
Boundary(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.Boundary
 
Boundary(RandomAccessibleInterval<T>, Boundary.StructuringElement) - Constructor for class net.imglib2.roi.boundary.Boundary
 
Boundary.StructuringElement - Enum in net.imglib2.roi.boundary
 
BoundaryRandomAccess4<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
BoundaryRandomAccess4(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess4
 
BoundaryRandomAccess8<T extends BooleanType<T>> - Class in net.imglib2.roi.boundary
BoundaryRandomAccess8(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.roi.boundary.BoundaryRandomAccess8
 
Bounded - Interface in net.imglib2.outofbounds
Interface implemented by entities (Samplers, Positionables, Localizables) that can tell whether they are currently located outside of the image boundaries.
BoundingBox - Class in net.imglib2.labeling
Deprecated.
BoundingBox(int) - Constructor for class net.imglib2.labeling.BoundingBox
Deprecated.
 
BoundingBox - Class in net.imglib2.roi.labeling
A bounding box Interval around a region that is build by aggregating positions contained in the region.
BoundingBox(int) - Constructor for class net.imglib2.roi.labeling.BoundingBox
 
BoundingBox - Class in net.imglib2.transform.integer
TODO
BoundingBox(int) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBox(long[], long[]) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
BoundingBox(Interval) - Constructor for class net.imglib2.transform.integer.BoundingBox
 
boundingBox - Variable in class net.imglib2.view.TransformBuilder
Interval transformed to the currently visited view.
BoundingBoxTransform - Interface in net.imglib2.transform.integer
Implemented by Transforms that can transform (easily) a BoundingBox in the source space to a bounding box in the target space.
box - Variable in class net.imglib2.ui.overlay.BoxOverlayRenderer
Navigation wire-frame cube.
boxInterval - Variable in class net.imglib2.ui.overlay.BoxOverlayRenderer
Screen interval in which to display navigation wire-frame cube.
BoxOverlay - Class in net.imglib2.ui.overlay
Paint a transformed box (interval + transform) that represents the source that is shown in the viewer.
BoxOverlay() - Constructor for class net.imglib2.ui.overlay.BoxOverlay
 
BoxOverlayRenderer - Class in net.imglib2.ui.overlay
OverlayRenderer showing a transformed box (interval + transform) that represents the source that is shown in the viewer.
BoxOverlayRenderer() - Constructor for class net.imglib2.ui.overlay.BoxOverlayRenderer
 
BoxOverlayRenderer(int, int) - Constructor for class net.imglib2.ui.overlay.BoxOverlayRenderer
Create a BoxOverlayRenderer with the given initial canvas size.
Branchpoints - Class in net.imglib2.algorithm.morphology.table2d
Removes all pixels except those that are the branchpoints of a skeleton.
Branchpoints() - Constructor for class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
branchpoints(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
branchpoints(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Branchpoints
 
bresenham(List<? extends RealLocalizable>) - Static method in class net.imglib2.roi.util.ROIUtils
 
BresenhamLine<T> - Class in net.imglib2.algorithm.region
n-Dimension Bresenham line (http://en.wikipedia.org/wiki/Bresenham%27s_line_algorithm") : an iterator that iterates all the pixels between two points.
BresenhamLine(RandomAccessible<T>) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
BresenhamLine(RandomAccessible<T>, Localizable, Localizable) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
BresenhamLine(RandomAccess<T>, Localizable, Localizable) - Constructor for class net.imglib2.algorithm.region.BresenhamLine
 
Bridge - Class in net.imglib2.algorithm.morphology.table2d
Sets a pixel to 1 if it has two non-zero neighbors that are on opposite sides of this pixel.
Bridge() - Constructor for class net.imglib2.algorithm.morphology.table2d.Bridge
 
bridge(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Bridge
 
bridge(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Bridge
 
brightfield - Variable in class net.imglib2.script.filter.CorrectFlatField
 
Brightness - Class in net.imglib2.script.color
TODO
Brightness(IterableRealInterval<? extends ARGBType>) - Constructor for class net.imglib2.script.color.Brightness
Extract the brightness component of each pixel, in the range [0, 1].
BrightToDark() - Constructor for class net.imglib2.algorithm.componenttree.BuildComponentTree.BrightToDark
 
bufferedImage - Variable in class net.imglib2.ui.overlay.BufferedImageOverlayRenderer
The BufferedImage that is actually drawn on the canvas.
BufferedImageImg<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.script.bufferedimage
 
BufferedImageImg(BufferedImage) - Constructor for class net.imglib2.script.bufferedimage.BufferedImageImg
 
BufferedImageOverlayRenderer - Class in net.imglib2.ui.overlay
OverlayRenderer drawing a BufferedImage, scaled to fill the canvas.
BufferedImageOverlayRenderer() - Constructor for class net.imglib2.ui.overlay.BufferedImageOverlayRenderer
 
bufferedImages - Variable in class net.imglib2.ui.AbstractMultiResolutionRenderer
bufferedImages - Variable in class net.imglib2.ui.AbstractSimpleRenderer
bufferedImageToRenderId - Variable in class net.imglib2.ui.AbstractMultiResolutionRenderer
Maps from BufferedImage to double-buffer index.
BufferedRectangularNeighborhood<T extends Type<T>> - Class in net.imglib2.algorithm.region.localneighborhood
 
BufferedRectangularNeighborhood(RandomAccessibleInterval<T>, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
BufferedRectangularNeighborhood(int, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, long[]) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
BufferedRectangularNeighborhoodCursor<T extends Type<T>> - Class in net.imglib2.algorithm.region.localneighborhood
 
BufferedRectangularNeighborhoodCursor(BufferedRectangularNeighborhood<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
BufferedRectangularNeighborhoodCursor(BufferedRectangularNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
build() - Method in class net.imglib2.view.TransformBuilder
Create a sequence of wrapped RandomAccessibles from the TransformBuilder.transforms list.
BuildComponentTree<T extends Type<T>,C extends PartialComponent<T,C>> - Class in net.imglib2.algorithm.componenttree
Build the component tree of an image.
buildComponentTree(RandomAccessibleInterval<T>, PartialComponent.Generator<T, C>, PartialComponent.Handler<C>, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.BuildComponentTree
Run the algorithm.
buildComponentTree(RandomAccessibleInterval<T>, PartialComponent.Generator<T, C>, PartialComponent.Handler<C>, boolean) - Static method in class net.imglib2.algorithm.componenttree.BuildComponentTree
Run the algorithm.
buildComponentTree(RandomAccessibleInterval<T>, T, boolean) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, ImgFactory<LongType>, boolean) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
buildComponentTree(RandomAccessibleInterval<T>, T, Comparator<T>, ImgFactory<LongType>) - Static method in class net.imglib2.algorithm.componenttree.pixellist.PixelListComponentTree
Build a component tree from an input image.
BuildComponentTree.BrightToDark<T extends Comparable<T>> - Class in net.imglib2.algorithm.componenttree
Default comparator for Comparable pixel values for bright-to-dark pass.
BuildComponentTree.DarkToBright<T extends Comparable<T>> - Class in net.imglib2.algorithm.componenttree
Default comparator for Comparable pixel values for dark-to-bright pass.
buildIterableInterval() - Method in class net.imglib2.view.iteration.IterableTransformBuilder
Create an IterableInterval on the Interval specified in the constructor of the RandomAccessible specified in the constructor.
buildMserTree(RandomAccessibleInterval<T>, double, long, long, double, double, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, T, long, long, double, double, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, T, long, long, double, double, ImgFactory<LongType>, boolean) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, ComputeDelta<T>, long, long, double, double, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
buildMserTree(RandomAccessibleInterval<T>, ComputeDelta<T>, long, long, double, double, ImgFactory<LongType>, T, Comparator<T>) - Static method in class net.imglib2.algorithm.componenttree.mser.MserTree
Build a MSER tree from an input image.
ByteAccess - Interface in net.imglib2.img.basictypeaccess
TODO
ByteArray - Class in net.imglib2.img.basictypeaccess.array
 
ByteArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
 
ByteArray(byte[]) - Constructor for class net.imglib2.img.basictypeaccess.array.ByteArray
 
ByteAWTScreenImage - Class in net.imglib2.display.screenimage.awt
A AWTScreenImage that is an ArrayImg<ByteType, ByteArray>.
ByteAWTScreenImage(ArrayImg<ByteType, ByteArray>) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
ByteAWTScreenImage(ByteType, ByteArray, long[]) - Constructor for class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
ByteImagePlus<T extends NativeType<T>> - Class in net.imglib2.img.imageplus
ImagePlusImg for byte-stored data.
ByteImagePlus(long[], Fraction) - Constructor for class net.imglib2.img.imageplus.ByteImagePlus
 
ByteImagePlus(ImagePlus) - Constructor for class net.imglib2.img.imageplus.ByteImagePlus
 
ByteNtree - Class in net.imglib2.img.sparse
ByteAccess based on a Ntree.
ByteNtree(long[], long[], Byte) - Constructor for class net.imglib2.img.sparse.ByteNtree
 
bytes(long...) - Static method in class net.imglib2.img.array.ArrayImgs
bytes(byte[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ByteType, ByteArray> reusing a passed byte[] array.
bytes(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ByteType, ByteAccess> using a ByteAccess passed as argument.
bytes(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
bytes(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
bytes - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
ByteType - Class in net.imglib2.type.numeric.integer
TODO
ByteType(NativeImg<?, ? extends ByteAccess>) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(byte) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType(ByteAccess) - Constructor for class net.imglib2.type.numeric.integer.ByteType
 
ByteType() - Constructor for class net.imglib2.type.numeric.integer.ByteType
 

C

c - Variable in class net.imglib2.script.color.fn.RGBAOp
 
cached_first_element - Variable in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
calculate(Img<T>) - Method in class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
calculate(RandomAccessible<T>, IterableInterval<T>) - Method in class net.imglib2.algorithm.morphology.table2d.Abstract3x3TableOperation
 
calculateEigenValues(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, EigenValues<T, U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValues(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, EigenValues<T, U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSquare(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSquare(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSymmetric(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateEigenValuesSymmetric(RandomAccessibleInterval<T>, RandomAccessibleInterval<U>, int, ExecutorService) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, OutOfBoundsFactory<U, ? super RandomAccessibleInterval<U>>, double...) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, OutOfBoundsFactory<T, ? super RandomAccessibleInterval<T>>) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, RandomAccessibleInterval<U>, OutOfBoundsFactory<U, ? super RandomAccessibleInterval<U>>, int, ExecutorService, double...) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, OutOfBoundsFactory<T, ? super RandomAccessibleInterval<T>>, int, ExecutorService) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
calculateMatrix(RandomAccessible<T>, RandomAccessibleInterval<T>, int, ExecutorService) - Static method in class net.imglib2.algorithm.gradient.HessianMatrix
 
call() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
 
cancel() - Method in interface net.imglib2.ui.InterruptibleProjector
Abort InterruptibleProjector.map() if it is currently running.
cancel() - Method in class net.imglib2.ui.SimpleInterruptibleProjector
 
canMoveOutside - Variable in class net.imglib2.algorithm.localextrema.SubpixelLocalization
 
canvasH - Variable in class net.imglib2.ui.TransformEventHandler2D
The screen size of the canvas (the component displaying the image and generating mouse events).
canvasH - Variable in class net.imglib2.ui.TransformEventHandler3D
The screen size of the canvas (the component displaying the image and generating mouse events).
canvasW - Variable in class net.imglib2.ui.TransformEventHandler2D
The screen size of the canvas (the component displaying the image and generating mouse events).
canvasW - Variable in class net.imglib2.ui.TransformEventHandler3D
The screen size of the canvas (the component displaying the image and generating mouse events).
Cbrt - Class in net.imglib2.script.math
TODO
Cbrt(IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Cbrt
 
Cbrt(IFunction) - Constructor for class net.imglib2.script.math.Cbrt
 
Cbrt(Number) - Constructor for class net.imglib2.script.math.Cbrt
 
Ceil - Class in net.imglib2.script.math
TODO
Ceil(IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Ceil
 
Ceil(IFunction) - Constructor for class net.imglib2.script.math.Ceil
 
Ceil(Number) - Constructor for class net.imglib2.script.math.Ceil
 
Cell<A> - Class in net.imglib2.img.cell
A cell of an AbstractCellImg.
Cell(int[], long[], A) - Constructor for class net.imglib2.img.cell.Cell
 
CellCursor<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
CellCursor(CellCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellCursor
 
CellCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellCursor
 
cellDimension(int) - Method in class net.imglib2.img.cell.CellGrid
Get the number of pixels in a standard cell in a given dimension d.
cellDimensions(int[]) - Method in class net.imglib2.img.cell.CellGrid
Write the number of pixels in a standard cell in each dimension into long[].
cellDims - Variable in class net.imglib2.img.cell.CellRandomAccess
 
CellGrid - Class in net.imglib2.img.cell
Defines AbstractCellImg geometry and translates between image, cell, and grid coordinates.
CellGrid(long[], int[]) - Constructor for class net.imglib2.img.cell.CellGrid
 
CellGrid(CellGrid) - Constructor for class net.imglib2.img.cell.CellGrid
 
CellImg<T extends NativeType<T>,A> - Class in net.imglib2.img.cell
 
CellImg(CellImgFactory<T>, CellGrid, ListImg<Cell<A>>, Fraction) - Constructor for class net.imglib2.img.cell.CellImg
 
CellImgFactory<T extends NativeType<T>> - Class in net.imglib2.img.cell
Factory for creating CellImgs.
CellImgFactory() - Constructor for class net.imglib2.img.cell.CellImgFactory
 
CellImgFactory(int...) - Constructor for class net.imglib2.img.cell.CellImgFactory
 
CellIterationOrder - Class in net.imglib2.img.cell
Iteration order for a CellImg.
CellIterationOrder(AbstractCellImg<?, ?, ?, ?>) - Constructor for class net.imglib2.img.cell.CellIterationOrder
 
CellLocalizingCursor<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
Localizing Cursor on a AbstractCellImg.
CellLocalizingCursor(CellLocalizingCursor<T, C>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
 
CellLocalizingCursor(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellLocalizingCursor
 
cellMaxPositions - Variable in class net.imglib2.script.algorithm.integral.IntegralCursor
 
cellMinPositions - Variable in class net.imglib2.script.algorithm.integral.IntegralCursor
 
CellRandomAccess<T extends NativeType<T>,C extends Cell<?>> - Class in net.imglib2.img.cell
CellRandomAccess(CellRandomAccess<T, C>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
 
CellRandomAccess(AbstractCellImg<T, ?, C, ?>) - Constructor for class net.imglib2.img.cell.CellRandomAccess
 
cells - Variable in class net.imglib2.img.cell.AbstractCellImg
 
center - Variable in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
center - Variable in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
The pixel coordinates of the center of this regions.
CenteredRectangleShape - Class in net.imglib2.algorithm.neighborhood
A factory for Accessibles on rectangular neighborhoods.
CenteredRectangleShape(int[], boolean) - Constructor for class net.imglib2.algorithm.neighborhood.CenteredRectangleShape
Constructs a factory for symmetric, non-isotropic rectangle neighborhoods.
centerValuesPerBin(int, double, double) - Static method in class net.imglib2.util.Binning
Returns array of center values for each bin.
centerX - Variable in class net.imglib2.ui.TransformEventHandler2D
Screen coordinates to keep centered while zooming or rotating with the keyboard.
centerX - Variable in class net.imglib2.ui.TransformEventHandler3D
Screen coordinates to keep centered while zooming or rotating with the keyboard.
centerY - Variable in class net.imglib2.ui.TransformEventHandler2D
Screen coordinates to keep centered while zooming or rotating with the keyboard.
centerY - Variable in class net.imglib2.ui.TransformEventHandler3D
Screen coordinates to keep centered while zooming or rotating with the keyboard.
Channel - Class in net.imglib2.script.color
Extracts the pixel value for the desired channel, from 1 to 4, where RGBA is really ARGB and thus A=4, R=3, G=2, B=1.
Channel(IterableRealInterval<? extends ARGBType>, int) - Constructor for class net.imglib2.script.color.Channel
 
Channel(IterableRealInterval<? extends RealType<?>>, int) - Constructor for class net.imglib2.script.color.fn.ColorFunction.Channel
In RGBALegacyType, A=4, R=3, G=2, B=1, or H=3, S=2, B=1
ChannelARGBConverter - Class in net.imglib2.converter
Convert UnsignedByteType into one channel of ARGBType.
ChannelARGBConverter(ChannelARGBConverter.Channel) - Constructor for class net.imglib2.converter.ChannelARGBConverter
 
ChannelARGBConverter.Channel - Enum in net.imglib2.converter
 
ChannelOp - Class in net.imglib2.script.color.fn
TODO
ChannelOp(IterableRealInterval<? extends ARGBType>) - Constructor for class net.imglib2.script.color.fn.ChannelOp
 
channels - Variable in class net.imglib2.img.imageplus.ImagePlusImg
 
CharAccess - Interface in net.imglib2.img.basictypeaccess
TODO
CharArray - Class in net.imglib2.img.basictypeaccess.array
 
CharArray(int) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
 
CharArray(char[]) - Constructor for class net.imglib2.img.basictypeaccess.array.CharArray
 
CharNtree - Class in net.imglib2.img.sparse
CharAccess based on a Ntree.
CharNtree(long[], long[], Character) - Constructor for class net.imglib2.img.sparse.CharNtree
 
ChartUtils - Class in net.imglib2.script.analysis
TODO
ChartUtils() - Constructor for class net.imglib2.script.analysis.ChartUtils
 
check(C, Neighborhood<T>) - Method in interface net.imglib2.algorithm.localextrema.LocalExtrema.LocalNeighborhoodCheck
Determine whether a pixel is a local extremum.
check(C, Neighborhood<T>) - Method in class net.imglib2.algorithm.localextrema.LocalExtrema.MaximumCheck
 
check(C, Neighborhood<T>) - Method in class net.imglib2.algorithm.localextrema.LocalExtrema.MinimumCheck
 
checkBijectivity(int[]) - Static method in class net.imglib2.transform.integer.permutation.AbstractPermutationTransform
 
checkContainers(Collection<IterableRealInterval<?>>) - Static method in class net.imglib2.script.math.Compute
Ensure that the Container of each Image of @param images is compatible with all the others.
checkInput() - Method in interface net.imglib2.algorithm.Algorithm
 
checkInput() - Method in class net.imglib2.algorithm.fft.Bandpass
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.FourierTransform
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.fft.InverseFourierTransform
Deprecated.
 
checkInput() - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
checkInput() - Method in class net.imglib2.algorithm.integral.IntegralImg
 
checkInput() - Method in class net.imglib2.algorithm.integral.ScaleAreaAveraging2d
 
checkInput() - Method in class net.imglib2.algorithm.labeling.Watershed
 
checkInput() - Method in class net.imglib2.algorithm.localization.PeakFitter
 
checkInput() - Method in class net.imglib2.algorithm.math.PickImagePeaks
 
checkInput() - Method in class net.imglib2.algorithm.pde.CoherenceEnhancingDiffusionTensor2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
 
checkInput() - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.Gradient
 
checkInput() - Method in class net.imglib2.algorithm.pde.IsotropicDiffusionTensor
 
checkInput() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor2D
 
checkInput() - Method in class net.imglib2.algorithm.pde.MomentOfInertiaTensor3D
 
checkInput() - Method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
 
checkInput() - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
checkInput() - Method in class net.imglib2.algorithm.stats.Histogram
 
checkInput() - Method in class net.imglib2.algorithm.transformation.ImageTransform
 
checkInterval(Interval, int[]) - Static method in class net.imglib2.transform.integer.permutation.PermutationTransform
Test whether a given lut can be applied to an interval.
checkOutOfBounds() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
checkOutOfBounds() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
checkResize() - Method in class net.imglib2.ui.AbstractMultiResolutionRenderer
Check whether the size of the display component was changed and recreate AbstractMultiResolutionRenderer.screenImages and AbstractMultiResolutionRenderer.screenScaleTransforms accordingly.
checkResize() - Method in class net.imglib2.ui.AbstractSimpleRenderer
Check whether the size of the display component was changed and recreate AbstractSimpleRenderer.screenImages and screen scale transforms accordingly.
chiSquared(double[][], double[], double[], FitFunction) - Static method in class net.imglib2.algorithm.localization.LevenbergMarquardtSolver
Calculate the current sum-squared-error
Chunk - Class in net.imglib2.multithreading
Deprecated.
Chunk(long, long) - Constructor for class net.imglib2.multithreading.Chunk
Deprecated.
 
Clean - Class in net.imglib2.algorithm.morphology.table2d
Removes isolated pixels.
Clean() - Constructor for class net.imglib2.algorithm.morphology.table2d.Clean
 
clean(Img<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Clean
 
clean(RandomAccessible<T>, IterableInterval<T>) - Static method in class net.imglib2.algorithm.morphology.table2d.Clean
 
clear() - Method in class net.imglib2.algorithm.componenttree.pixellist.PixelList
empty the list.
clear() - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
clear() - Method in class net.imglib2.roi.labeling.LabelingType
 
Clear - Class in net.imglib2.script.edit
Return 0 for all values.
Clear(IFunction) - Constructor for class net.imglib2.script.edit.Clear
 
Clear(IterableRealInterval<R>) - Constructor for class net.imglib2.script.edit.Clear
 
Clear(Number) - Constructor for class net.imglib2.script.edit.Clear
Present only for completeness.
clearBins() - Method in class net.imglib2.script.algorithm.integral.histogram.Histogram
 
clip(ConvexPolytope) - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
clip(double[][]) - Method in class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
clip - Variable in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
ClipConvexPolytopeKDTree<T> - Class in net.imglib2.algorithm.kdtree
Partition nodes in a KDTree into disjoint sets of nodes that are inside and outside a given convex polytope, respectively.
ClipConvexPolytopeKDTree(KDTree<T>) - Constructor for class net.imglib2.algorithm.kdtree.ClipConvexPolytopeKDTree
 
clone() - Method in class net.imglib2.script.algorithm.integral.histogram.Histogram
 
clone() - Method in class net.imglib2.script.algorithm.integral.histogram.LinearHistogram
 
clone() - Method in class net.imglib2.util.Fraction
 
close(Img<T>, List<Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType Img, using a list of Shapes as a structuring element.
close(Img<T>, List<Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on an Img of Comparable , using a list of Shapes as a structuring element.
close(Img<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType Img, using a Shape as a structuring element.
close(Img<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on an Img of Comparable , using a Shape as a structuring element.
close(RandomAccessible<T>, IterableInterval<T>, List<Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, List<Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a source RandomAccessible, using a list of Shapes as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a RealType source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close(RandomAccessible<T>, IterableInterval<T>, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the morphological closing operation on a source RandomAccessible, using a Shape as a structuring element, and writes the result on a specified target which must be an IterableInterval.
close() - Method in class net.imglib2.img.imageplus.ByteImagePlus
 
close() - Method in class net.imglib2.img.imageplus.FloatImagePlus
 
close() - Method in class net.imglib2.img.imageplus.ImagePlusImg
Free resources.
close() - Method in class net.imglib2.img.imageplus.IntImagePlus
 
close() - Method in class net.imglib2.img.imageplus.ShortImagePlus
 
close() - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
close() - Method in interface net.imglib2.roi.GeneralPathSegmentHandler
Deprecated.
 
closeInPlace(RandomAccessibleInterval<T>, Interval, List<Shape>, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a source RandomAccessibleInterval using a list of Shapes as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, List<Shape>, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RandomAccessibleInterval using a list of Shapes as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, Shape, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RealType RandomAccessibleInterval using a Shape as a flat structuring element.
closeInPlace(RandomAccessibleInterval<T>, Interval, Shape, T, T, int) - Static method in class net.imglib2.algorithm.morphology.Closing
Performs the closing morphological operation, on a RandomAccessibleInterval using a Shape as a flat structuring element.
Closing - Class in net.imglib2.algorithm.morphology
 
code - Variable in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
Index into weights array.
CoherenceEnhancingDiffusionTensor2D<T extends RealType<T>> - Class in net.imglib2.algorithm.pde
 
CoherenceEnhancingDiffusionTensor2D(Img<T>) - Constructor for class net.imglib2.algorithm.pde.CoherenceEnhancingDiffusionTensor2D
 
collapse(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T> into an ( n-1)-dimensional RandomAccessibleInterval< GenericComposite<T>>
collapse(RandomAccessible<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T> into an (n -1)-dimensional RandomAccessible<GenericComposite <T>>
collapseNumeric(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseNumeric(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends NumericType <T>> into an (n-1)-dimensional RandomAccessible <NumericComposite<T>>
collapseReal(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends RealType<T>> into an (n-1)-dimensional RandomAccessibleInterval<RealComposite<T>>
collapseReal(RandomAccessible<T>, int) - Static method in class net.imglib2.view.Views
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends RealType <T>> into an (n-1)-dimensional RandomAccessible <RealComposite<T>>
ColorFunction - Class in net.imglib2.script.color.fn
TODO
ColorFunction() - Constructor for class net.imglib2.script.color.fn.ColorFunction
 
ColorFunction.Channel - Class in net.imglib2.script.color.fn
 
ColorTable - Interface in net.imglib2.display
 
ColorTable16 - Class in net.imglib2.display
16-bit color lookup table.
ColorTable16() - Constructor for class net.imglib2.display.ColorTable16
Initializes a 16-bit color table with a linear grayscale ramp.
ColorTable16(short[]...) - Constructor for class net.imglib2.display.ColorTable16
Initializes a 16-bit color table with the given table values.
ColorTable8 - Class in net.imglib2.display
8-bit color lookup table.
ColorTable8() - Constructor for class net.imglib2.display.ColorTable8
Initializes an 8-bit color table with a linear grayscale ramp.
ColorTable8(byte[]...) - Constructor for class net.imglib2.display.ColorTable8
Initializes an 8-bit color table with the given table values.
cols(double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
 
compare(T, T) - Method in class net.imglib2.algorithm.componenttree.BuildComponentTree.BrightToDark
 
compare(T, T) - Method in class net.imglib2.algorithm.componenttree.BuildComponentTree.DarkToBright
 
compare(L, L) - Method in class net.imglib2.KDTree.DimComparator
 
compare(long, long) - Static method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
compareTo(Watershed.PixelIntensity<U>) - Method in class net.imglib2.algorithm.labeling.Watershed.PixelIntensity
 
compareTo(BasePairBitType) - Method in class net.imglib2.type.label.BasePairBitType
 
compareTo(BasePairCharType) - Method in class net.imglib2.type.label.BasePairCharType
 
compareTo(BitType) - Method in class net.imglib2.type.logic.BitType
 
compareTo(BoolType) - Method in class net.imglib2.type.logic.BoolType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
compareTo(T) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
compareTo(LongType) - Method in class net.imglib2.type.numeric.integer.LongType
 
compareTo(Unsigned128BitType) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
compareTo(UnsignedByteType) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
compareTo(UnsignedIntType) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
compareTo(UnsignedLongType) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
compareTo(UnsignedShortType) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
compareTo(UnsignedVariableBitLengthType) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
compareTo(T) - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
compareTo(FloatType) - Method in class net.imglib2.type.numeric.real.FloatType
 
compareTo(T) - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
complement() - Method in interface net.imglib2.type.BasePairType
 
complement() - Method in class net.imglib2.type.label.BasePairBitType
 
complement() - Method in class net.imglib2.type.label.BasePairCharType
 
complexConjugate(RandomAccessibleInterval<T>) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.AbstractComplexType
 
complexConjugate() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
complexConjugate() - Method in interface net.imglib2.type.numeric.ComplexType
 
complexConjugate() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
complexConjugate() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
complexConjugate() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
complexDoubles(long...) - Static method in class net.imglib2.img.array.ArrayImgs
complexDoubles(double[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<DoubleType, DoubleArray> reusing a passed double[] array.
complexDoubles(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ComplexDoubleType, DoubleAccess> using a DoubleAccess passed as argument.
complexDoubles(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
ComplexDoubleType - Class in net.imglib2.type.numeric.complex
TODO
ComplexDoubleType(NativeImg<?, ? extends DoubleAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(double, double) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType(DoubleAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
ComplexDoubleType() - Constructor for class net.imglib2.type.numeric.complex.ComplexDoubleType
 
complexFloats(long...) - Static method in class net.imglib2.img.array.ArrayImgs
complexFloats(float[], long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<FloatType, FloatArray> reusing a passed float[] array.
complexFloats(A, long...) - Static method in class net.imglib2.img.array.ArrayImgs
Creates an ArrayImg<ComplexFloatType, FloatAccess> using a FloatAccess passed as argument.
complexFloats(long...) - Static method in class net.imglib2.img.imageplus.ImagePlusImgs
complexFloats(long...) - Static method in class net.imglib2.img.planar.PlanarImgs
ComplexFloatType - Class in net.imglib2.type.numeric.complex
TODO
ComplexFloatType(NativeImg<?, ? extends FloatAccess>) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(float, float) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType(FloatAccess) - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexFloatType() - Constructor for class net.imglib2.type.numeric.complex.ComplexFloatType
 
ComplexImaginaryFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Returns the imaginary value of a complex value
ComplexImaginaryFloatConverter() - Constructor for class net.imglib2.converter.ComplexImaginaryFloatConverter
 
ComplexPhaseFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the phase spectrum for a complex value
ComplexPhaseFloatConverter() - Constructor for class net.imglib2.converter.ComplexPhaseFloatConverter
 
ComplexPowerFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the power spectrum for a complex value
ComplexPowerFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerFloatConverter
 
ComplexPowerGLogFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Computes the generalized log of the power spectrum for a complex value
ComplexPowerGLogFloatConverter() - Constructor for class net.imglib2.converter.ComplexPowerGLogFloatConverter
 
ComplexRealFloatConverter<R extends ComplexType<R>> - Class in net.imglib2.converter
Returns the real value for of complex value
ComplexRealFloatConverter() - Constructor for class net.imglib2.converter.ComplexRealFloatConverter
 
complexToComplex(RandomAccessibleInterval<C>, int, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplex(RandomAccessibleInterval<C>, int, boolean, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplex(RandomAccessibleInterval<C>, int, boolean, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-complex forward or inverse FFT transform of an n-dimensional dataset in a certain dimension.
complexToComplexForward(RandomAccessibleInterval<C>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexForward(RandomAccessibleInterval<C>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexForward(RandomAccessibleInterval<C>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToComplexInverse(RandomAccessibleInterval<C>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessible<C>, Interval, Interval, ImgFactory<R>, R, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int, boolean, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean, int) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToReal(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, Interval, int, boolean, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFTMethods
Computes a complex-to-real inverse FFT transform of an n-dimensional dataset in a certain dimension (typically dim = 0).
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, int) - Static method in class net.imglib2.algorithm.fft2.FFT
 
complexToRealUnpad(RandomAccessibleInterval<C>, RandomAccessibleInterval<R>, ExecutorService) - Static method in class net.imglib2.algorithm.fft2.FFT
 
ComplexType<T extends ComplexType<T>> - Interface in net.imglib2.type.numeric
TODO
Component<T,C extends Component<T,C>> - Interface in net.imglib2.algorithm.componenttree
Represents a connected component and a node in a ComponentTree.
component - Variable in class net.imglib2.transform.integer.ComponentMappingTransform
for each component of the target vector: from which source vector component should it be taken.
component - Variable in class net.imglib2.transform.integer.MixedTransform
for each component of the target vector (before translation).
component - Variable in class net.imglib2.transform.integer.SlicingTransform
specifies for each component of the target vector from which source vector component should it be taken.
ComponentForest<C extends Component<?,C>> - Interface in net.imglib2.algorithm.componenttree
A component forest.
ComponentMapping - Interface in net.imglib2.transform.integer
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
ComponentMappingTransform - Class in net.imglib2.transform.integer
Map the components of the source vector to obtain the target vector, for instance transform (x,y,z) to (x,z,y).
ComponentMappingTransform(int) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
 
ComponentMappingTransform(int[]) - Constructor for class net.imglib2.transform.integer.ComponentMappingTransform
 
ComponentTree<C extends Component<?,C>> - Interface in net.imglib2.algorithm.componenttree
A component tree.
Composite<T> - Interface in net.imglib2.view.composite
A Composite is a vector of scalars T.
composite - Variable in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeChannelConverter<T extends Type<T>,A extends Composite<T>> - Class in net.imglib2.converter
A converter to extract one channel of a Composite.
CompositeChannelConverter(long) - Constructor for class net.imglib2.converter.CompositeChannelConverter
 
CompositeFactory<T,C extends Composite<T>> - Interface in net.imglib2.view.composite
A factory to create a Composite vector of scalars T given a RandomAccess.
compositeFactory - Variable in class net.imglib2.view.composite.CompositeView
 
CompositeIntervalView<T,C extends Composite<T>> - Class in net.imglib2.view.composite
CompositeIntervalView(RandomAccessibleInterval<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeIntervalView
 
CompositeRandomAccess() - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeRandomAccess(CompositeView<T, C>.CompositeRandomAccess) - Constructor for class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
CompositeRegionOfInterest - Class in net.imglib2.roi
Deprecated. 
CompositeRegionOfInterest(int) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Initialize an empty composite region of interest.
CompositeRegionOfInterest(RegionOfInterest) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
Initialize a composite region of interest with a single ROI
CompositeRegionOfInterest(Collection<RegionOfInterest>) - Constructor for class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
 
CompositeView<T,C extends Composite<T>> - Class in net.imglib2.view.composite
CompositeView collapses the trailing dimension of a RandomAccessible of T into a Composite of T.
CompositeView(RandomAccessible<T>, CompositeFactory<T, C>) - Constructor for class net.imglib2.view.composite.CompositeView
 
CompositeView.CompositeRandomAccess - Class in net.imglib2.view.composite
 
CompositeXYProjector<A> - Class in net.imglib2.display.projector.composite
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
CompositeXYProjector(RandomAccessibleInterval<A>, IterableInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYProjector
 
CompositeXYRandomAccessibleProjector<A> - Class in net.imglib2.display.projector.composite
Creates a composite image from across multiple dimensional positions along an axis (typically, but not necessarily, channels).
CompositeXYRandomAccessibleProjector(RandomAccessibleInterval<A>, RandomAccessibleInterval<ARGBType>, ArrayList<Converter<A, ARGBType>>, int) - Constructor for class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
compute(S, T, U) - Method in interface net.imglib2.algorithm.function.Function
Perform an operation with inputs S and T and output U.
compute(A, A, A) - Method in class net.imglib2.algorithm.function.SubtractNorm
 
compute(A, B, C) - Method in class net.imglib2.algorithm.function.SubtractNormReal
 
compute(A, B, C) - Method in class net.imglib2.algorithm.function.SubtractReal
 
compute(Composite<T>, Composite<U>) - Method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues1D
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues2DSquare
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValues2DSymmetric
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSquare
 
compute(Composite<T>, Composite<U>) - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSymmetric
 
compute(long, long, T, T) - Method in class net.imglib2.algorithm.stats.ComputeMinMax
 
compute(Histogram<T>, T) - Method in class net.imglib2.script.algorithm.integral.histogram.features.IHMax
 
compute(Histogram<T>, T) - Method in class net.imglib2.script.algorithm.integral.histogram.features.IHMean
 
compute(Histogram<T>, T) - Method in class net.imglib2.script.algorithm.integral.histogram.features.IHMedian
 
compute(Histogram<T>, T) - Method in class net.imglib2.script.algorithm.integral.histogram.features.IHMin
 
compute(Histogram<T>, T, T) - Method in class net.imglib2.script.algorithm.integral.histogram.features.IHStdDev
 
compute(Histogram<T>, T, T) - Method in interface net.imglib2.script.algorithm.integral.histogram.features.IHUnaryDependentFeature
 
compute(Histogram<T>, T) - Method in interface net.imglib2.script.algorithm.integral.histogram.features.IHUnaryFeature
 
Compute - Class in net.imglib2.script.math
Compute an IFunction into an Img.
Compute() - Constructor for class net.imglib2.script.math.Compute
 
computeBin(T) - Method in class net.imglib2.script.algorithm.integral.histogram.Histogram
 
computeBin(T) - Method in class net.imglib2.script.algorithm.integral.histogram.LinearHistogram
 
ComputeDelta<T> - Interface in net.imglib2.algorithm.componenttree.mser
For a given threshold value compute the threshold value delta steps down the component tree.
ComputeDeltaBrightToDark<T extends NumericType<T>> - Class in net.imglib2.algorithm.componenttree.mser
Default implementation of ComputeDelta for bright-to-dark pass for NumericType.
ComputeDeltaDarkToBright<T extends NumericType<T>> - Class in net.imglib2.algorithm.componenttree.mser
Default implementation of ComputeDelta for dark-to-bright pass for NumericType.
computeFFT(RandomAccessibleInterval<T>, ImgFactory<S>, S, OutOfBoundsFactory<T, RandomAccessibleInterval<T>>, int[], int[], int, boolean) - Static method in class net.imglib2.algorithm.fft.FFTFunctions
Deprecated.
 
computeInverseFFT(RandomAccessibleInterval<S>, ImgFactory<T>, T, int, boolean, boolean, int[], int[], float) - Static method in class net.imglib2.algorithm.fft.FFTFunctions
Deprecated.
 
computeKernel() - Method in class net.imglib2.algorithm.gauss.AbstractGauss
Compute the Gaussian Kernel for all dimensions
computeMinIsotropicSigma(double, double, double[]) - Static method in class net.imglib2.algorithm.dog.DifferenceOfGaussian
Helper function to compute the minimum sigma that can be given to DifferenceOfGaussian.computeSigmas(double, double, double[], double, double) while still achieving isotropic smoothed images.
ComputeMinMax<T extends Type<T> & Comparable<T>> - Class in net.imglib2.algorithm.stats
TODO
ComputeMinMax(IterableInterval<T>, T, T) - Constructor for class net.imglib2.algorithm.stats.ComputeMinMax
 
computeMinMax(RandomAccessibleInterval<T>, T, T) - Static method in class net.imglib2.algorithm.stats.ComputeMinMax
Computes minimal and maximal value in a given interval
computeSigmas(double, double, double[], double, double) - Static method in class net.imglib2.algorithm.dog.DifferenceOfGaussian
Helper function to compute per-dimension sigmas in pixel coordinates.
computeSize() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
Compute the number of elements for iteration
computeSize() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
Compute the number of elements for iteration
computeSize() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
Compute the number of elements for iteration
computeSmallestType(Img<R>) - Static method in class net.imglib2.script.algorithm.integral.FastIntegralImg
Determine the smallest type that will correctly store the sums.
computeStatistics() - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
Compute all statistics on the labels if cache is dirty.
computeTargetImageDimensionsAndOffset(Interval, Shape) - Static method in class net.imglib2.algorithm.morphology.MorphologyUtils
Static util to compute the final image dimensions and required offset when performing a full dilation with the specified strel.
computeWeight(double) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
Concatenable<A> - Interface in net.imglib2.concatenate
If T implements Concatenable that means you can concatenate it with an A, usually resulting in another T.
concatenate(A) - Method in interface net.imglib2.concatenate.Concatenable
Concatenate this object with a.
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform
 
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform2D
 
concatenate(AffineTransform2D) - Method in class net.imglib2.realtransform.AffineTransform2D
 
concatenate(double, double, double, double, double, double, double, double, double, double, double, double) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(AffineTransform3D.AffineMatrix3D) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(double...) - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
concatenate(AffineTransform3D) - Method in class net.imglib2.realtransform.AffineTransform3D
 
concatenate(AffineGet) - Method in class net.imglib2.realtransform.AffineTransform3D
 
concatenate(ScaleGet) - Method in class net.imglib2.realtransform.Scale3D
 
concatenate(ScaleAndTranslationGet) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation2D
 
concatenate(TranslationGet) - Method in class net.imglib2.realtransform.Translation3D
 
concatenate(ComponentMapping) - Method in class net.imglib2.transform.integer.ComponentMappingTransform
 
concatenate(Mixed) - Method in class net.imglib2.transform.integer.MixedTransform
 
concatenate(Slicing) - Method in class net.imglib2.transform.integer.SlicingTransform
 
concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform
 
concatenate(Translation) - Method in class net.imglib2.transform.integer.TranslationTransform.InverseTranslationTransform
 
concatenate(int, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Concatenate an array of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Concatenate a list of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, StackView.StackAccessMode, RandomAccessibleInterval<T>...) - Static method in class net.imglib2.view.Views
Concatenate an array of RandomAccessibleInterval along the provided concatenationAxis.
concatenate(int, StackView.StackAccessMode, List<? extends RandomAccessibleInterval<T>>) - Static method in class net.imglib2.view.Views
Concatenate a list of RandomAccessibleInterval along the provided concatenationAxis.
ConcatenateUtils - Class in net.imglib2.concatenate
Utilities for manipulating lists of (pre-)concatenable objects.
ConcatenateUtils() - Constructor for class net.imglib2.concatenate.ConcatenateUtils
 
ConnectedComponents - Class in net.imglib2.algorithm.labeling
Label all connected components of a binary image.
ConnectedComponents() - Constructor for class net.imglib2.algorithm.labeling.ConnectedComponents
 
ConnectedComponents.StructuringElement - Enum in net.imglib2.algorithm.labeling
 
constantRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
 
constantRandomAccessibleInterval(T, int, Interval) - Static method in class net.imglib2.util.ConstantUtils
 
constantRealRandomAccessible(T, int) - Static method in class net.imglib2.util.ConstantUtils
 
ConstantUtils - Class in net.imglib2.util
 
ConstantUtils() - Constructor for class net.imglib2.util.ConstantUtils
 
constDs - Static variable in class net.imglib2.realtransform.Translation2D
 
constDs - Static variable in class net.imglib2.realtransform.Translation3D
 
container - Variable in class net.imglib2.img.planar.PlanarCursor
 
container - Variable in class net.imglib2.img.planar.PlanarLocalizingCursor
 
contains(Object) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.AngleRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.CompositeRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.EllipseRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
contains(RealLocalizable) - Method in class net.imglib2.roi.geometric.Polygon
Return true if the given point is contained inside the boundary.
contains(Object) - Method in class net.imglib2.roi.labeling.LabelingType
 
contains(double[]) - Method in class net.imglib2.roi.LineRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.PolygonRegionOfInterest
Deprecated.
 
contains(double[]) - Method in class net.imglib2.roi.RectangleRegionOfInterest
Deprecated.
 
contains(double[]) - Method in interface net.imglib2.roi.RegionOfInterest
Deprecated.
Determine whether a point is a member of the region of interest
Contains<L extends RealLocalizable> - Interface in net.imglib2.roi.util
Implementing class know if it contains a certain RealLocalizable of type <L> or not.
contains(L) - Method in interface net.imglib2.roi.util.Contains
Tests if implementor contains a RealLocalizable.
contains(Interval, Localizable) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval contains the contained point.
contains(RealInterval, RealLocalizable) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval contains the contained point.
contains(Interval, Interval) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval completely contains the contained interval.
contains(RealInterval, RealInterval) - Static method in class net.imglib2.util.Intervals
Test whether the containing interval completely contains the contained interval.
containsAll(Collection<?>) - Method in class net.imglib2.labeling.LabelingMapping.InternedList
Deprecated.
 
containsAll(Collection<?>) - Method in class net.imglib2.roi.labeling.LabelingType
 
ContainsRandomAccess - Class in net.imglib2.roi.util
ContainsRandomAccess(Contains<? super Localizable>) - Constructor for class net.imglib2.roi.util.ContainsRandomAccess
 
ContainsRandomAccess(ContainsRandomAccess) - Constructor for class net.imglib2.roi.util.ContainsRandomAccess
 
ContainsRealRandomAccess - Class in net.imglib2.roi.util
ContainsRealRandomAccess(Contains<? super RealLocalizable>) - Constructor for class net.imglib2.roi.util.ContainsRealRandomAccess
 
ContainsRealRandomAccess(ContainsRealRandomAccess) - Constructor for class net.imglib2.roi.util.ContainsRealRandomAccess
 
convert(A, A) - Method in class net.imglib2.algorithm.function.NormMinMax
 
convert(ARGBType, T) - Method in class net.imglib2.converter.ARGBARGBDoubleConverter
 
convert(T, ARGBType) - Method in class net.imglib2.converter.ARGBDoubleARGBConverter
 
convert(UnsignedByteType, ARGBType) - Method in class net.imglib2.converter.ChannelARGBConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexImaginaryFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPhaseFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexPowerGLogFloatConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.ComplexRealFloatConverter
 
convert(A, T) - Method in class net.imglib2.converter.CompositeChannelConverter
 
convert(A, B) - Method in interface net.imglib2.converter.Converter
 
convert(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessible<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessible whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(RandomAccessibleInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create a RandomAccessibleInterval whose RandomAccesses Sampler.get() you a converted sample.
convert(IterableInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(IterableInterval<A>, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
Create an IterableInterval whose Cursors Sampler.get() you a converted sample.
convert(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
convert(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Static method in class net.imglib2.converter.Converters
Create a RealRandomAccessible whose RealRandomAccesses Sampler.get() you a converted sample.
convert(Sampler<? extends ARGBType>) - Method in class net.imglib2.converter.readwrite.ARGBChannelSamplerConverter
 
convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealDoubleSamplerConverter
 
convert(Sampler<? extends R>) - Method in class net.imglib2.converter.readwrite.RealFloatSamplerConverter
 
convert(Sampler<? extends A>) - Method in interface net.imglib2.converter.readwrite.SamplerConverter
 
convert(R, ARGBType) - Method in class net.imglib2.converter.RealARGBConverter
 
convert(R, DoubleType) - Method in class net.imglib2.converter.RealDoubleConverter
 
convert(R, FloatType) - Method in class net.imglib2.converter.RealFloatConverter
 
convert(R, ARGBType) - Method in class net.imglib2.converter.RealLUTConverter
 
convert(R, UnsignedByteType) - Method in class net.imglib2.converter.RealUnsignedByteConverter
 
convert(R, UnsignedShortType) - Method in class net.imglib2.converter.RealUnsignedShortConverter
 
convert(T, T) - Method in class net.imglib2.converter.TypeIdentity
 
convert(VolatileRealType<?>, ARGBType) - Method in class net.imglib2.converter.VolatileRealTypeARGBConverter
 
convert(R, T) - Method in class net.imglib2.script.filter.fn.ConverterImgProxy
 
converted - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converted - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
converted - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
ConvertedCursor<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedCursor(Cursor<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedCursor
Creates a copy of b for conversion that can be accessed through ConvertedCursor.get().
ConvertedIterableInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedIterableInterval(IterableInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedIterableInterval
Creates a copy of b for conversion.
ConvertedRandomAccess<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccess(RandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccess
 
ConvertedRandomAccessible<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccessible(RandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessible
 
ConvertedRandomAccessibleInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRandomAccessibleInterval(RandomAccessibleInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
ConvertedRealRandomAccess<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccess(RealRandomAccess<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccess
 
ConvertedRealRandomAccessible<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccessible(RealRandomAccessible<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
ConvertedRealRandomAccessibleRealInterval<A,B extends Type<B>> - Class in net.imglib2.converter.read
TODO
ConvertedRealRandomAccessibleRealInterval(RealRandomAccessibleRealInterval<A>, Converter<? super A, ? super B>, B) - Constructor for class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
converter - Variable in class net.imglib2.algorithm.integral.IntegralImg
 
Converter<A,B> - Interface in net.imglib2.converter
 
converter - Variable in class net.imglib2.converter.read.ConvertedCursor
 
converter - Variable in class net.imglib2.converter.read.ConvertedIterableInterval
 
converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccess
 
converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccessible
 
converter - Variable in class net.imglib2.converter.read.ConvertedRandomAccessibleInterval
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessible
 
converter - Variable in class net.imglib2.converter.read.ConvertedRealRandomAccessibleRealInterval
 
converter - Variable in class net.imglib2.display.projector.IterableIntervalProjector2D
 
converter - Variable in class net.imglib2.display.projector.RandomAccessibleProjector2D
 
converter - Variable in class net.imglib2.display.projector.sampler.SamplingProjector2D
 
converter - Variable in class net.imglib2.ui.AbstractInterruptibleProjector
A converter from the source pixel type to the target pixel type.
converter - Variable in class net.imglib2.ui.util.FinalSource
 
converter - Variable in class net.imglib2.ui.util.InterpolatingSource
 
ConverterImgProxy<R extends RealType<R>,T extends RealType<T>> - Class in net.imglib2.script.filter.fn
A read-only image that converts a source Img to the target Type on the fly.
ConverterImgProxy(Img<R>, T) - Constructor for class net.imglib2.script.filter.fn.ConverterImgProxy
Uses the image as a read-only Img.
converterListRGBA - Static variable in class net.imglib2.converter.ChannelARGBConverter
ChannelARGBConverter.converterListRGBA can be used in CompositeXYProjector to convert a 4-channel UnsignedByteType into composite ARGBType.
Converters - Class in net.imglib2.converter
Convenience factory methods for sample conversion.
Converters() - Constructor for class net.imglib2.converter.Converters
 
convertFloat(ImagePlus) - Static method in class net.imglib2.img.display.imagej.ImageJFunctions
 
convertFloat(ImagePlus) - Static method in class net.imglib2.img.ImagePlusAdapter
 
convertRandomAccessibleIterableInterval(S, SamplerConverter<? super A, B>) - Static method in class net.imglib2.converter.Converters
ConvertToDouble - Class in net.imglib2.script.filter
TODO
ConvertToDouble(Img<R>) - Constructor for class net.imglib2.script.filter.ConvertToDouble
 
convertToFloat(Img<T>, Converter<T, FloatType>) - Static method in class net.imglib2.img.ImagePlusAdapter
 
ConvertToFloat - Class in net.imglib2.script.filter
TODO
ConvertToFloat(Img<R>) - Constructor for class net.imglib2.script.filter.ConvertToFloat
 
ConvertToLong - Class in net.imglib2.script.filter
TODO
ConvertToLong(Img<R>) - Constructor for class net.imglib2.script.filter.ConvertToLong
 
ConvertToUByte - Class in net.imglib2.script.filter
TODO
ConvertToUByte(Img<R>) - Constructor for class net.imglib2.script.filter.ConvertToUByte
 
ConvertToUShort - Class in net.imglib2.script.filter
TODO
ConvertToUShort(Img<R>) - Constructor for class net.imglib2.script.filter.ConvertToUShort
 
ConvexPolytope - Class in net.imglib2.algorithm.kdtree
 
ConvexPolytope(Collection<? extends HyperPlane>) - Constructor for class net.imglib2.algorithm.kdtree.ConvexPolytope
 
ConvexPolytope(HyperPlane...) - Constructor for class net.imglib2.algorithm.kdtree.ConvexPolytope
 
convolve(Img<T>, Img<S>) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
convolve(RandomAccessibleInterval<T>, RandomAccessibleInterval<S>, ImgFactory<T>, ImgFactory<S>, ImgFactory<ComplexFloatType>) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
convolve() - Method in class net.imglib2.algorithm.fft2.FFTConvolution
 
convolve(RandomAccessible<R>, Interval, RandomAccessible<R>, Interval, RandomAccessibleInterval<R>, ImgFactory<ComplexFloatType>, int) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
 
convolve(double[][], RandomAccessible<S>, RandomAccessibleInterval<T>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
Convolve source with a separable symmetric kernel and write the result to output.
convolve(double[][], RandomAccessible<S>, RandomAccessibleInterval<T>, ConvolverFactory<S, I>, ConvolverFactory<I, I>, ConvolverFactory<I, T>, ConvolverFactory<S, T>, ImgFactory<I>, I, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
Convolve source with a separable symmetric kernel and write the result to output.
convolve1d(double[], RandomAccessible<S>, RandomAccessibleInterval<T>, ConvolverFactory<S, T>, ExecutorService) - Static method in class net.imglib2.algorithm.gauss3.SeparableSymmetricConvolution
 
ConvolverFactory<S,T> - Interface in net.imglib2.algorithm.gauss3
ConvolverFactory creates 1-dimensional line convolvers.
ConvolverFactoryNativeType(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNativeType.ConvolverFactoryNativeType
 
ConvolverFactoryNativeTypeBuffered(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNativeTypeBuffered.ConvolverFactoryNativeTypeBuffered
 
ConvolverNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
A 1-dimensional line convolver that operates on all NumericType with NativeType representation.
ConvolverNativeType.ConvolverFactoryNativeType<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
 
ConvolverNativeTypeBuffered<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
A 1-dimensional line convolver that operates on all NumericType with NativeType representation.
ConvolverNativeTypeBuffered.ConvolverFactoryNativeTypeBuffered<T extends NumericType<T> & NativeType<T>> - Class in net.imglib2.algorithm.gauss3
 
ConvolverNumericType<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss3
A 1-dimensional line convolver that operates on all NumericType.
ConvolverNumericType.ConvolverNumericTypeFactory<T extends NumericType<T>> - Class in net.imglib2.algorithm.gauss3
 
ConvolverNumericTypeFactory(T) - Constructor for class net.imglib2.algorithm.gauss3.ConvolverNumericType.ConvolverNumericTypeFactory
 
coordinates - Variable in class net.imglib2.PointSampleList
 
coordinates - Variable in class net.imglib2.RealPointSampleList
 
copy() - Method in class net.imglib2.AbstractCursor
 
copy() - Method in class net.imglib2.AbstractCursorInt
 
copy() - Method in class net.imglib2.AbstractLocalizingCursor
 
copy() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
copy() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.gauss.SamplingLineIterator
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.gradient.ScaleAsFunctionOfPosition.ScaledRandomAccess
 
copy() - Method in interface net.imglib2.algorithm.linalg.eigen.EigenValues
 
copy() - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSquare
 
copy() - Method in class net.imglib2.algorithm.linalg.eigen.EigenValuesSymmetric
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
copy() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
copy(RandomAccessibleInterval<T>, ImgFactory<FloatType>) - Static method in class net.imglib2.algorithm.pde.PeronaMalikAnisotropicDiffusion
Makes a copy of the RandomAccessibleInterval into a new Img of FloatType.
copy() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
copy() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.AbstractNeighborhood
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
copy() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
 
copy() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
copy() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
copy() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
copy() - Method in class net.imglib2.converter.read.ConvertedCursor
 
copy() - Method in class net.imglib2.converter.read.ConvertedRandomAccess
 
copy() - Method in class net.imglib2.converter.read.ConvertedRealRandomAccess
 
copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedCursor
 
copy() - Method in class net.imglib2.converter.readwrite.WriteConvertedRandomAccess
 
copy() - Method in class net.imglib2.display.projector.sampler.IntervalSampler
 
copy() - Method in class net.imglib2.display.projector.sampler.SelectiveSampler
 
copy() - Method in interface net.imglib2.histogram.BinMapper1d
Returns a copy of this BinMapper1d<T>.
copy() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
copy() - Method in class net.imglib2.histogram.Histogram1d
 
copy() - Method in class net.imglib2.histogram.HistogramNd
 
copy() - Method in class net.imglib2.histogram.Integer1dBinMapper
 
copy() - Method in class net.imglib2.histogram.Real1dBinMapper
 
copy() - Method in class net.imglib2.img.array.ArrayCursor
 
copy() - Method in class net.imglib2.img.array.ArrayImg
 
copy() - Method in class net.imglib2.img.array.ArrayLocalizingCursor
copy() - Method in class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
copy() - Method in class net.imglib2.img.array.ArrayRandomAccess
 
copy() - Method in class net.imglib2.img.array.ArraySubIntervalCursor
copy() - Method in class net.imglib2.img.cell.CellCursor
 
copy() - Method in class net.imglib2.img.cell.CellImg
 
copy() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
copy() - Method in class net.imglib2.img.cell.CellRandomAccess
 
copy() - Method in class net.imglib2.img.cell.LazyCellImg
 
copy() - Method in class net.imglib2.img.cell.LazyCellImg.LazyCells
 
copy() - Method in interface net.imglib2.img.Img
 
copy() - Method in class net.imglib2.img.ImgView
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
copy() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
copy() - Method in class net.imglib2.img.list.ListCursor
 
copy() - Method in class net.imglib2.img.list.ListImg
 
copy() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
copy() - Method in class net.imglib2.img.list.ListRandomAccess
 
copy() - Method in class net.imglib2.img.planar.PlanarCursor
 
copy() - Method in class net.imglib2.img.planar.PlanarImg
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor1D
 
copy() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor2D
 
copy() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
copy() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
copy() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
copy() - Method in class net.imglib2.img.sparse.NtreeCursor
 
copy() - Method in class net.imglib2.img.sparse.NtreeImg
 
copy() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
copy() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
copy() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator1D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator2D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator3D
 
copy() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
copy() - Method in class net.imglib2.KDTree.KDTreeCursor
 
copy() - Method in class net.imglib2.KDTree.SamplerNode
 
copy() - Method in class net.imglib2.KDTree.ValueNode
 
copy() - Method in class net.imglib2.KDTreeNode
 
copy() - Method in interface net.imglib2.labeling.Labeling
Deprecated.
Copy method
copy() - Method in class net.imglib2.labeling.LabelingConvertedCursor
Deprecated.
 
copy() - Method in class net.imglib2.labeling.LabelingConvertedRandomAccess
Deprecated.
 
copy() - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
copy() - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
copy() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
copy() - Method in interface net.imglib2.neighborsearch.KNearestNeighborSearch
Create a copy.
copy() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnIterableRealInterval
 
copy() - Method in class net.imglib2.neighborsearch.KNearestNeighborSearchOnKDTree
 
copy() - Method in interface net.imglib2.neighborsearch.NearestNeighborSearch
Create a copy.
copy() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnIterableRealInterval
 
copy() - Method in class net.imglib2.neighborsearch.NearestNeighborSearchOnKDTree
 
copy() - Method in class net.imglib2.outofbounds.AbstractOutOfBoundsMirror
 
copy() - Method in interface net.imglib2.outofbounds.OutOfBounds
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
copy() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
copy() - Method in interface net.imglib2.outofbounds.RealOutOfBounds
 
copy() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
copy() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
copy() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
copy() - Method in class net.imglib2.realtransform.AbstractRealTransformSequence
 
copy() - Method in class net.imglib2.realtransform.AbstractScale
 
copy() - Method in class net.imglib2.realtransform.AbstractTranslation
 
copy() - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
copy() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
copy() - Method in class net.imglib2.realtransform.AffineTransform
 
copy() - Method in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
copy() - Method in class net.imglib2.realtransform.AffineTransform2D
 
copy() - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
copy() - Method in class net.imglib2.realtransform.AffineTransform3D
 
copy() - Method in class net.imglib2.realtransform.DeformationFieldTransform
 
copy() - Method in class net.imglib2.realtransform.HomographyTransform2D
 
copy() - Method in class net.imglib2.realtransform.InversePerspective3D
 
copy() - Method in class net.imglib2.realtransform.InverseRealTransform
 
copy() - Method in interface net.imglib2.realtransform.InvertibleRealTransform
 
copy() - Method in class net.imglib2.realtransform.InvertibleRealTransformSequence
 
copy() - Method in class net.imglib2.realtransform.Perspective3D
 
copy() - Method in class net.imglib2.realtransform.PolarToCartesianTransform2D
 
copy() - Method in class net.imglib2.realtransform.PolynomialTransform2D
 
copy() - Method in interface net.imglib2.realtransform.RealTransform
Create a deep copy of this RealTransform.
copy() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
copy() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
copy() - Method in class net.imglib2.realtransform.RealTransformSequence
 
copy() - Method in class net.imglib2.realtransform.Scale
 
copy() - Method in class net.imglib2.realtransform.Scale2D
 
copy() - Method in class net.imglib2.realtransform.Scale3D
 
copy() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
copy() - Method in class net.imglib2.realtransform.ScaledPolarToTranslatedCartesianTransform2D
 
copy() - Method in class net.imglib2.realtransform.SphericalToCartesianTransform3D
 
copy() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
copy() - Method in class net.imglib2.realtransform.ThinplateSplineTransform
 
copy() - Method in class net.imglib2.realtransform.Translation
 
copy() - Method in class net.imglib2.realtransform.Translation2D
 
copy() - Method in class net.imglib2.realtransform.Translation3D
 
copy() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
copy() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
copy() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
copy() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess4
 
copy() - Method in class net.imglib2.roi.boundary.BoundaryRandomAccess8
 
copy() - Method in class net.imglib2.roi.labeling.LabelingType
Note: The copy shares the mapping of this LabelingType.
copy() - Method in class net.imglib2.roi.labeling.LabelRegion
Create a copy of this LabelRegion.
copy() - Method in class net.imglib2.roi.labeling.LabelRegionCursor
 
copy() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
copy() - Method in class net.imglib2.roi.util.ContainsRandomAccess
 
copy() - Method in class net.imglib2.roi.util.ContainsRealRandomAccess
 
copy() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
 
copy() - Method in class net.imglib2.roi.util.SamplingCursor
 
copy() - Method in interface net.imglib2.Sampler
 
copy() - Method in class net.imglib2.script.algorithm.fn.ImgProxy
 
copy() - Method in class net.imglib2.script.algorithm.fn.RandomAccessibleImgProxy
 
copy() - Method in class net.imglib2.script.algorithm.fn.RandomAccessibleIntervalImgProxy
 
copy() - Method in class net.imglib2.script.algorithm.integral.histogram.IntegralHistogramCursor
 
copy() - Method in class net.imglib2.script.algorithm.integral.IntegralCursor
 
Copy<R extends RealType<R>,RI extends IterableInterval<R> & RandomAccessible<R>,T extends RealType<T>> - Class in net.imglib2.script.edit
TODO
Copy(RI, IterableInterval<T>) - Constructor for class net.imglib2.script.edit.Copy
Copies into .
copy() - Method in class net.imglib2.script.filter.fn.ConverterImgProxy
Returns a new ConverterImgProxy for the same source.
copy() - Method in class net.imglib2.transform.integer.shear.AbstractShearTransform
 
copy() - Method in class net.imglib2.transform.integer.shear.InverseShearTransform
 
copy() - Method in class net.imglib2.transform.integer.shear.ShearTransform
 
copy() - Method in class net.imglib2.type.label.BasePairBitType
 
copy() - Method in class net.imglib2.type.label.BasePairCharType
 
copy() - Method in class net.imglib2.type.logic.BitType
 
copy() - Method in class net.imglib2.type.logic.BoolType
 
copy() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
copy() - Method in class net.imglib2.type.numeric.ARGBType
 
copy() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
copy() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
copy() - Method in class net.imglib2.type.numeric.integer.ByteType
 
copy() - Method in class net.imglib2.type.numeric.integer.IntType
 
copy() - Method in class net.imglib2.type.numeric.integer.LongType
 
copy() - Method in class net.imglib2.type.numeric.integer.ShortType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
copy() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
copy() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
copy() - Method in class net.imglib2.type.numeric.real.DoubleType
 
copy() - Method in class net.imglib2.type.numeric.real.FloatType
 
copy() - Method in interface net.imglib2.type.Type
Creates a new Type variable that has the value of this Type
copy() - Method in class net.imglib2.type.volatiles.VolatileNumericType
 
copy() - Method in class net.imglib2.type.volatiles.VolatileRealType
 
copy(double[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
Copy a flat array of doubles into an Img.
copy(float[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(long[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(int[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(boolean[], int, int[], Img<T>) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, double[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
Copy the contents of an Img to a double array
copy(Img<T>, float[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, long[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, int[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(Img<T>, boolean[], int, int[]) - Static method in class net.imglib2.util.ImgUtil
 
copy(double[][], double[][]) - Static method in class net.imglib2.util.LinAlgHelpers
set C = A, where A is a matrix.
copy() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
copy() - Method in class net.imglib2.view.composite.NumericComposite
 
copy() - Method in class net.imglib2.view.composite.RealComposite
 
copy() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
copy() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
copy() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
copy() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
copy() - Method in class net.imglib2.view.iteration.SlicingCursor
copy() - Method in class net.imglib2.view.MixedRandomAccess
 
copy() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
copy() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
copy() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
copy() - Method in class net.imglib2.view.SlicingRandomAccess
 
copy() - Method in class net.imglib2.view.StackView.DefaultRA
 
copy() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
copy() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
copy() - Method in class net.imglib2.view.TransformRandomAccess
 
copy() - Method in class net.imglib2.view.TranslationRandomAccess
 
copyContains() - Method in class net.imglib2.roi.geometric.Polygon
 
copyContains() - Method in interface net.imglib2.roi.util.Contains
Create a copy of the Contains
copyCursor() - Method in class net.imglib2.AbstractCursor
 
copyCursor() - Method in class net.imglib2.AbstractCursorInt
 
copyCursor() - Method in class net.imglib2.AbstractLocalizingCursor
 
copyCursor() - Method in class net.imglib2.AbstractLocalizingCursorInt
 
copyCursor() - Method in class net.imglib2.algorithm.fft.LocalNeighborhoodCursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter.LocalCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.BresenhamLine
 
copyCursor() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphereCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhoodCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidCursor
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhoodCursor2
Deprecated.
 
copyCursor() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
copyCursor() - Method in class net.imglib2.converter.AbstractConvertedCursor
 
copyCursor() - Method in interface net.imglib2.Cursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArrayLocalizingSubIntervalCursor
 
copyCursor() - Method in class net.imglib2.img.array.ArraySubIntervalCursor
 
copyCursor() - Method in class net.imglib2.img.cell.CellCursor
 
copyCursor() - Method in class net.imglib2.img.cell.CellLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListCursor
 
copyCursor() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.list.ListCursor
 
copyCursor() - Method in class net.imglib2.img.list.ListLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarLocalizingCursor
 
copyCursor() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetCursor
copyCursor() - Method in class net.imglib2.img.planar.PlanarPlaneSubsetLocalizingCursor
copyCursor() - Method in class net.imglib2.img.sparse.NtreeCursor
 
copyCursor() - Method in class net.imglib2.KDTree.KDTreeCursor
 
copyCursor() - Method in class net.imglib2.PointSampleList.PointSampleListCursor
 
copyCursor() - Method in interface net.imglib2.RealCursor
 
copyCursor() - Method in class net.imglib2.RealPointSampleList.RealPointSampleListCursor
 
copyCursor() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval.AROICursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval.BMROICursor
Deprecated.
 
copyCursor() - Method in class net.imglib2.roi.labeling.LabelRegionCursor
 
copyCursor() - Method in class net.imglib2.roi.util.RandomAccessibleRegionCursor
 
copyCursor() - Method in class net.imglib2.roi.util.SamplingCursor
 
copyCursor() - Method in class net.imglib2.script.algorithm.integral.histogram.IntegralHistogramCursor
 
copyCursor() - Method in class net.imglib2.script.algorithm.integral.IntegralCursor
 
copyCursor() - Method in class net.imglib2.view.iteration.SlicingCursor
copyCursor() - Method in class net.imglib2.view.RandomAccessibleIntervalCursor
 
copyDataTo(AbstractCellImg<T, ?, ?, ?>) - Method in class net.imglib2.img.cell.AbstractCellImg
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.array.ArrayRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.cell.CellRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.list.AbstractLongListImg.LongListRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.list.ListRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.planar.PlanarRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.img.sparse.NtreeRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsBorder
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValue
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorDoubleBoundary
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowing
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorSingleBoundary
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodic
 
copyRandomAccess() - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValue
 
copyRandomAccess() - Method in interface net.imglib2.RandomAccess
 
copyRandomAccess() - Method in class net.imglib2.realtransform.AffineRandomAccessible.AffineRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.realtransform.RealTransformRandomAccessible.RealTransformRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.roi.labeling.LabelRegionRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.roi.util.ContainsRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.script.algorithm.integral.histogram.IntegralHistogramCursor
 
copyRandomAccess() - Method in class net.imglib2.script.algorithm.integral.IntegralCursor
 
copyRandomAccess() - Method in class net.imglib2.view.composite.CompositeView.CompositeRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.FullSourceMapMixedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.FullSourceMapSlicingRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.HyperSlice.HyperSliceRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.HyperSlicesView.HyperSlicesViewRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.MixedRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.RandomAccessibleOnRealRandomAccessible.RandomAccessOnRealRandomAccessible
 
copyRandomAccess() - Method in class net.imglib2.view.RandomAccessiblePair.RandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.SlicingRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.StackView.DefaultRA
 
copyRandomAccess() - Method in class net.imglib2.view.StackView.MoveAllSlicesRA
 
copyRandomAccess() - Method in class net.imglib2.view.SubsampleView.SubsampleRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.TransformRandomAccess
 
copyRandomAccess() - Method in class net.imglib2.view.TranslationRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.converter.AbstractConvertedRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolator
 
copyRealRandomAccess() - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGB
 
copyRealRandomAccess() - Method in class net.imglib2.outofbounds.RealOutOfBoundsRealRandomAccess
 
copyRealRandomAccess() - Method in interface net.imglib2.RealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.realtransform.AffineRealRandomAccessible.AffineRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.realtransform.RealTransformRealRandomAccessible.RealTransformRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.realtransform.StackingRealRandomAccessible.StackingRealRandomAccess
 
copyRealRandomAccess() - Method in class net.imglib2.roi.AbstractRegionOfInterest.AROIRandomAccess
Deprecated.
 
copyRealRandomAccess() - Method in class net.imglib2.roi.util.ContainsRealRandomAccess
 
corner1 - Variable in class net.imglib2.transform.integer.BoundingBox
 
corner1(long[]) - Method in class net.imglib2.transform.integer.BoundingBox
 
corner2 - Variable in class net.imglib2.transform.integer.BoundingBox
 
corner2(long[]) - Method in class net.imglib2.transform.integer.BoundingBox
 
CorrectFlatField - Class in net.imglib2.script.filter
 
CorrectFlatField(Object, Object, Object) - Constructor for class net.imglib2.script.filter.CorrectFlatField
 
CorrectFlatField(Object, Object) - Constructor for class net.imglib2.script.filter.CorrectFlatField
 
Cos - Class in net.imglib2.script.math
TODO
Cos(IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Cos
 
Cos(IFunction) - Constructor for class net.imglib2.script.math.Cos
 
Cos(Number) - Constructor for class net.imglib2.script.math.Cos
 
Cosh - Class in net.imglib2.script.math
TODO
Cosh(IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Cosh
 
Cosh(IFunction) - Constructor for class net.imglib2.script.math.Cosh
 
Cosh(Number) - Constructor for class net.imglib2.script.math.Cosh
 
count - Variable in class net.imglib2.algorithm.region.localneighborhood.RectangleCursor
 
countColumns() - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
countData(Iterable<T>) - Method in class net.imglib2.histogram.Histogram1d
Counts the data contained in the given data source using the underlying bin distribution.
countData(Iterable<List<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts the data contained in the given data source using the underlying bin distribution.
countData(List<Iterable<T>>) - Method in class net.imglib2.histogram.HistogramNd
Counts the data contained in the given data source using the underlying bin distribution.
countRows() - Method in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
countTrue(RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.util.ROIUtils
 
cov() - Method in class net.imglib2.algorithm.componenttree.mser.Mser
Covariance of the pixel positions in the region.
create(double[], RandomAccess<S>, RandomAccess<T>, int, long) - Method in interface net.imglib2.algorithm.gauss3.ConvolverFactory
Create a 1-dimensional line convolver.
create(double[], RandomAccess<T>, RandomAccess<T>, int, long) - Method in class net.imglib2.algorithm.gauss3.ConvolverNativeType.ConvolverFactoryNativeType
 
create(double[], RandomAccess<T>, RandomAccess<T>, int, long) - Method in class net.imglib2.algorithm.gauss3.ConvolverNativeTypeBuffered.ConvolverFactoryNativeTypeBuffered
 
create(double[], RandomAccess<T>, RandomAccess<T>, int, long) - Method in class net.imglib2.algorithm.gauss3.ConvolverNumericType.ConvolverNumericTypeFactory
 
create(long[], long, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.DiamondNeighborhoodFactory
 
create(long[], long, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodFactory
 
create(long[], long, int, boolean, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodFactory
 
create(long[], long, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodFactory
 
create(long[], long[], RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodFactory
 
create(long[], long, int[], RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodFactory
 
create(long[], long[], long[], Interval, RandomAccess<T>) - Method in interface net.imglib2.algorithm.neighborhood.RectangleNeighborhoodFactory
 
create(long[], T) - Method in class net.imglib2.img.array.ArrayImgFactory
 
create(long[], T) - Method in class net.imglib2.img.cell.CellImgFactory
 
create(long[], T) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
create(Dimensions, T) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
create(long[], T) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(Dimensions, T) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(int[], T) - Method in class net.imglib2.img.ImgFactory
The ImgFactory can decide how to create the Img.
create(long[], T) - Method in class net.imglib2.img.list.ListImgFactory
 
create(long[], T) - Method in class net.imglib2.img.NativeImgFactory
This class will ask the Type to create a suitable Img for the Type and the dimensionality.
create(long[], T) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
create(long[], T) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
create(F) - Method in interface net.imglib2.interpolation.InterpolatorFactory
 
create(F, RealInterval) - Method in interface net.imglib2.interpolation.InterpolatorFactory
 
create(KNearestNeighborSearch<T>) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
Creates a new InverseDistanceWeightingInterpolator using a copy of the passed KNearestNeighborSearch.
create(KNearestNeighborSearch<T>, RealInterval) - Method in class net.imglib2.interpolation.neighborsearch.InverseDistanceWeightingInterpolatorFactory
Creates a new InverseDistanceWeightingInterpolator using a copy of the passed KNearestNeighborSearch.
create(NearestNeighborSearch<T>) - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
Creates a new NearestNeighborSearchInterpolator using a copy of the passed NearestNeighborSearch.
create(NearestNeighborSearch<T>, RealInterval) - Method in class net.imglib2.interpolation.neighborsearch.NearestNeighborSearchInterpolatorFactory
Creates a new NearestNeighborSearchInterpolator using a copy of the passed NearestNeighborSearch.
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.FloorInterpolatorFactory
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.LanczosInterpolatorFactory
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NearestNeighborInterpolatorFactory
create(RandomAccessible<ARGBType>) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
 
create(RandomAccessible<ARGBType>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorARGBFactory
create(RandomAccessible<T>) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
 
create(RandomAccessible<T>, RealInterval) - Method in class net.imglib2.interpolation.randomaccess.NLinearInterpolatorFactory
create(Interval) - Static method in class net.imglib2.iterator.IntervalIterator
 
create(long[]) - Method in class net.imglib2.labeling.LabelingFactory
Deprecated.
 
create(int[]) - Method in class net.imglib2.labeling.LabelingFactory
Deprecated.
 
create(Interval) - Method in class net.imglib2.labeling.LabelingFactory
Deprecated.
 
create(F) - Method in class net.imglib2.labeling.LabelingOutOfBoundsRandomAccessFactory
Deprecated.
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsBorderFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsConstantValueFactory
 
create(F) - Method in interface net.imglib2.outofbounds.OutOfBoundsFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorExpWindowingFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsMirrorFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsPeriodicFactory
 
create(F) - Method in class net.imglib2.outofbounds.OutOfBoundsRandomValueFactory
 
create(F) - Method in interface net.imglib2.outofbounds.RealOutOfBoundsFactory
 
create(RandomAccessibleInterval<T>) - Static method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
 
create(IterableInterval<Void>, RandomAccessible<T>) - Static method in class net.imglib2.roi.util.SamplingIterableInterval
 
create(Img<T>, Histogram<T>) - Static method in class net.imglib2.script.algorithm.integral.histogram.IntegralHistogram
 
create(Img<T>, Histogram<T>, R) - Static method in class net.imglib2.script.algorithm.integral.histogram.IntegralHistogram
 
create(RenderTarget, PainterThread) - Method in class net.imglib2.ui.MultiResolutionRenderer.Factory
 
create(RenderTarget, PainterThread) - Method in interface net.imglib2.ui.RendererFactory
Create a new Renderer.
create(RenderTarget, PainterThread) - Method in class net.imglib2.ui.SimpleRenderer.Factory
 
create(TransformListener<A>) - Method in interface net.imglib2.ui.TransformEventHandlerFactory
Create a new TransformEventHandler which reports to the given TransformListener.
create(RandomAccess<T>) - Method in interface net.imglib2.view.composite.CompositeFactory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.GenericComposite.Factory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.NumericComposite.Factory
 
create(RandomAccess<T>) - Method in class net.imglib2.view.composite.RealComposite.Factory
 
create(RandomAccessibleInterval<T>) - Static method in class net.imglib2.view.IterableRandomAccessibleInterval
 
createAllocationSteps(long[], long[]) - Static method in class net.imglib2.util.IntervalIndexer
Create allocation step array from the dimensions of an N-dimensional array.
createAllocationSteps(int[], int[]) - Static method in class net.imglib2.util.IntervalIndexer
Create allocation step array from the dimensions of an N-dimensional array.
createAppropriateResultImg(RandomAccessibleInterval<T>, ImgFactory<U>, U) - Static method in class net.imglib2.algorithm.linalg.eigen.TensorEigenValues
Create appropriately sized image for tensor input.
createArray(int) - Method in interface net.imglib2.img.basictypeaccess.array.ArrayDataAccess
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.ByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.CharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyCharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyDoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyFloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyIntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyLongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DirtyShortArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.DoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.FloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.IntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.LongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.array.ShortArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileByteArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileCharArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileDoubleArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileFloatArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileIntArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileLongArray
 
createArray(int) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.AbstractVolatileShortArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileByteArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileCharArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileDoubleArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileFloatArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileIntArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileLongArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.DirtyVolatileShortArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileByteArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileCharArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileDoubleArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileFloatArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileIntArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileLongArray
 
createArray(int, boolean) - Method in class net.imglib2.img.basictypeaccess.volatiles.array.VolatileShortArray
 
createArray(int, boolean) - Method in interface net.imglib2.img.basictypeaccess.volatiles.VolatileArrayDataAccess
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createByteInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createCharInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createComponent(T) - Method in interface net.imglib2.algorithm.componenttree.PartialComponent.Generator
Create a new empty component with the given value (e.g., grey-level).
createDataBuffer(A) - Method in class net.imglib2.display.screenimage.awt.ArrayImgAWTScreenImage
 
createDataBuffer(ByteArray) - Method in class net.imglib2.display.screenimage.awt.ByteAWTScreenImage
 
createDataBuffer(DoubleArray) - Method in class net.imglib2.display.screenimage.awt.DoubleAWTScreenImage
 
createDataBuffer(FloatArray) - Method in class net.imglib2.display.screenimage.awt.FloatAWTScreenImage
 
createDataBuffer(IntArray) - Method in class net.imglib2.display.screenimage.awt.IntAWTScreenImage
 
createDataBuffer(ShortArray) - Method in class net.imglib2.display.screenimage.awt.ShortAWTScreenImage
 
createDataBuffer(ByteArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedByteAWTScreenImage
 
createDataBuffer(IntArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedIntAWTScreenImage
 
createDataBuffer(ShortArray) - Method in class net.imglib2.display.screenimage.awt.UnsignedShortAWTScreenImage
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createDoubleInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createErrorDiffusionKernel(int) - Method in class net.imglib2.algorithm.floydsteinberg.FloydSteinbergDithering
 
createExecutorService() - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
Utility function to create an ExecutorService Number of threads utilized matches available processors in runtime.
createExecutorService(int) - Static method in class net.imglib2.algorithm.fft2.FFTConvolution
Utility function to create an ExecutorService
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createFloatInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createGaussianKernel(ImgFactory<FloatType>, double, int) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
createGaussianKernel(ImgFactory<FloatType>, double[]) - Static method in class net.imglib2.algorithm.fft.FourierConvolution
Deprecated.
 
createGaussianKernel1DDouble(double, boolean) - Static method in class net.imglib2.util.Util
This method creates a gaussian kernel
createInputLineSampler(int, Interval) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
An Iterator that samples a one dimensional line of input data for the current dimension.
createInstance(long[]) - Method in class net.imglib2.img.sparse.BooleanNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.ByteNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.CharNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.DoubleNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.FloatNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.IntNtree
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.LongNtree
 
createInstance(long[]) - Method in interface net.imglib2.img.sparse.NtreeAccess
 
createInstance(long[]) - Method in class net.imglib2.img.sparse.ShortNtree
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createIntInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createInverse() - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
createIterableRegionOfInterest(T) - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
createIterableRegionOfInterest(T) - Method in interface net.imglib2.labeling.LabelingROIStrategy
Deprecated.
An iterable region of interest, optimized for iteration over the pixels in the region of interest.
createLabelingROIStrategy(L) - Method in class net.imglib2.labeling.DefaultROIStrategyFactory
Deprecated.
 
createLabelingROIStrategy(L) - Method in interface net.imglib2.labeling.LabelingROIStrategyFactory
Deprecated.
 
createLinkedType() - Method in class net.imglib2.img.AbstractNativeImg
 
createLinkedType() - Method in interface net.imglib2.img.NativeImg
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createLongInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createMaxComponent() - Method in interface net.imglib2.algorithm.componenttree.PartialComponent.Generator
Create a component with a value (e.g., grey-level) greater than any occurring in the input for the BuildComponentTree.
createMinMax(long...) - Static method in class net.imglib2.FinalInterval
Create a FinalInterval from a parameter list comprising minimum and maximum coordinates.
createMinMax(double...) - Static method in class net.imglib2.FinalRealInterval
Create a FinalRealInterval from a parameter list comprising minimum and maximum coordinates.
createMinMax(long...) - Static method in class net.imglib2.util.Intervals
Create a FinalInterval from a parameter list comprising minimum and maximum coordinates.
createMinMaxReal(double...) - Static method in class net.imglib2.util.Intervals
Create a FinalRealInterval from a parameter list comprising minimum and maximum coordinates.
createMinSize(long...) - Static method in class net.imglib2.FinalInterval
Create a FinalInterval from a parameter list comprising minimum coordinates and size.
createMinSize(double...) - Static method in class net.imglib2.FinalRealInterval
Deprecated.
createMinSize(long...) - Static method in class net.imglib2.util.Intervals
Create a FinalInterval from a parameter list comprising minimum coordinates and size.
createMinSizeReal(double...) - Static method in class net.imglib2.util.Intervals
Deprecated.
createOutputLineWriter(int, Interval, SamplingLineIterator<T>) - Method in class net.imglib2.algorithm.gauss.AbstractGauss
An Iterator that samples a one dimensional line of output data for the current dimension.
createProjector(A, A, ARGBScreenImage) - Method in class net.imglib2.ui.AbstractMultiResolutionRenderer
Create a InterruptibleProjector that renders to the specified target image, applying the specified transformations to some source (that is specific to the derived class).
createProjector(A, ARGBScreenImage) - Method in class net.imglib2.ui.AbstractSimpleRenderer
Create a InterruptibleProjector that renders to the specified target image, applying the specified transformation to some source (that is specific to the derived class).
createProjector(A, A, ARGBScreenImage) - Method in class net.imglib2.ui.MultiResolutionRenderer
 
createProjector(AffineTransformType<A>, RenderSource<T, A>, A, A, ARGBScreenImage, int) - Static method in class net.imglib2.ui.MultiResolutionRenderer
 
createProjector(A, ARGBScreenImage) - Method in class net.imglib2.ui.SimpleRenderer
 
createProjector(AffineTransformType<A>, RenderSource<T, A>, A, ARGBScreenImage, int) - Static method in class net.imglib2.ui.SimpleRenderer
 
createRegionOfInterest(T) - Method in class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
createRegionOfInterest(T) - Method in interface net.imglib2.labeling.LabelingROIStrategy
Deprecated.
A region of interest designed to be queried for point-membership
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.array.ArrayImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.cell.CellImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.imageplus.ImagePlusImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.NativeImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.planar.PlanarImgFactory
 
createShortInstance(long[], Fraction) - Method in class net.imglib2.img.sparse.NtreeImgFactory
 
createSuitableNativeImg(NativeImgFactory<BasePairBitType>, long[]) - Method in class net.imglib2.type.label.BasePairBitType
 
createSuitableNativeImg(NativeImgFactory<BasePairCharType>, long[]) - Method in class net.imglib2.type.label.BasePairCharType
 
createSuitableNativeImg(NativeImgFactory<BitType>, long[]) - Method in class net.imglib2.type.logic.BitType
 
createSuitableNativeImg(NativeImgFactory<T>, long[]) - Method in interface net.imglib2.type.NativeType
The NativeType creates the NativeImg used for storing image data; based on the given storage strategy and its size.
createSuitableNativeImg(NativeImgFactory<ARGBType>, long[]) - Method in class net.imglib2.type.numeric.ARGBType
 
createSuitableNativeImg(NativeImgFactory<ComplexDoubleType>, long[]) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
createSuitableNativeImg(NativeImgFactory<ComplexFloatType>, long[]) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
createSuitableNativeImg(NativeImgFactory<ByteType>, long[]) - Method in class net.imglib2.type.numeric.integer.ByteType
 
createSuitableNativeImg(NativeImgFactory<IntType>, long[]) - Method in class net.imglib2.type.numeric.integer.IntType
 
createSuitableNativeImg(NativeImgFactory<LongType>, long[]) - Method in class net.imglib2.type.numeric.integer.LongType
 
createSuitableNativeImg(NativeImgFactory<ShortType>, long[]) - Method in class net.imglib2.type.numeric.integer.ShortType
 
createSuitableNativeImg(NativeImgFactory<Unsigned128BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
createSuitableNativeImg(NativeImgFactory<Unsigned12BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
createSuitableNativeImg(NativeImgFactory<Unsigned2BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
createSuitableNativeImg(NativeImgFactory<Unsigned4BitType>, long[]) - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
createSuitableNativeImg(NativeImgFactory<UnsignedByteType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
createSuitableNativeImg(NativeImgFactory<UnsignedIntType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
createSuitableNativeImg(NativeImgFactory<UnsignedLongType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
createSuitableNativeImg(NativeImgFactory<UnsignedShortType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
createSuitableNativeImg(NativeImgFactory<UnsignedVariableBitLengthType>, long[]) - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
createSuitableNativeImg(NativeImgFactory<NativeARGBDoubleType>, long[]) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
createSuitableNativeImg(NativeImgFactory<DoubleType>, long[]) - Method in class net.imglib2.type.numeric.real.DoubleType
 
createSuitableNativeImg(NativeImgFactory<FloatType>, long[]) - Method in class net.imglib2.type.numeric.real.FloatType
 
createTransform() - Method in interface net.imglib2.ui.AffineTransformType
Create a new transform of type A.
createTransform() - Method in class net.imglib2.ui.AffineTransformType2D
 
createTransform() - Method in class net.imglib2.ui.AffineTransformType3D
 
createVariable() - Method in class net.imglib2.labeling.LabelingType
Deprecated.
 
createVariable() - Method in class net.imglib2.roi.labeling.LabelingType
Note: This creates an "independent" LabelingType instance that has its own LabelingMapping.
createVariable(Class<? extends L>) - Method in class net.imglib2.roi.labeling.LabelingType
Creates a new LabelingType based on the underlying IntegerType of the existing LabelingType with a different label type L
createVariable() - Method in class net.imglib2.type.label.BasePairBitType
 
createVariable() - Method in class net.imglib2.type.label.BasePairCharType
 
createVariable() - Method in class net.imglib2.type.logic.BitType
 
createVariable() - Method in class net.imglib2.type.logic.BoolType
 
createVariable() - Method in class net.imglib2.type.numeric.ARGBDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.ARGBType
 
createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.ByteType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.IntType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.LongType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.ShortType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned12BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned2BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.Unsigned4BitType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedByteType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
createVariable() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
createVariable() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.real.DoubleType
 
createVariable() - Method in class net.imglib2.type.numeric.real.FloatType
 
createVariable() - Method in interface net.imglib2.type.Type
Creates a new Type variable which can only store one value.
createVariable() - Method in class net.imglib2.type.volatiles.VolatileNumericType
 
createVariable() - Method in class net.imglib2.type.volatiles.VolatileRealType
 
createVariable() - Method in class net.imglib2.view.composite.NumericComposite
Generates a 1D ArrayImg<T>
createVariable() - Method in class net.imglib2.view.composite.RealComposite
Generates a 1D ArrayImg<T>
cross(double[], double[], double[]) - Static method in class net.imglib2.util.LinAlgHelpers
compute cross product, set c = a ^ b.
cubicTo(double, double, double, double, double, double) - Method in class net.imglib2.roi.GeneralPathRegionOfInterest
Deprecated.
 
cubicTo(double, double, double, double, double, double) - Method in interface net.imglib2.roi.GeneralPathSegmentHandler
Deprecated.
 
curr - Variable in class net.imglib2.roi.util.iterationcode.IterationCodeBuilder
 
currentCellMax - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
currentCellMax - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentCellMin - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 
currentCellMin - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentCellSteps - Variable in class net.imglib2.img.cell.CellRandomAccess
 
currentConverters - Variable in class net.imglib2.display.projector.composite.CompositeXYProjector
 
currentConverters - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
currentMax - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
currentMin - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
currentNeighborhood - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.HypersphereNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodLocalizableSampler
 
currentPos - Variable in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodLocalizableSampler
 
currentPositions - Variable in class net.imglib2.display.projector.composite.CompositeXYProjector
 
currentPositions - Variable in class net.imglib2.display.projector.composite.CompositeXYRandomAccessibleProjector
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.DiamondTipsShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HorizontalLineShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.HyperSphereShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PairOfPointsShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.PeriodicLineShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenter
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodSkipCenterUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleNeighborhoodUnsafe
 
cursor() - Method in class net.imglib2.algorithm.neighborhood.RectangleShape.NeighborhoodsIterableInterval
 
cursor() - Method in class net.imglib2.algorithm.region.hypersphere.HyperSphere
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.BufferedRectangularNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipseNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.EllipsoidNeighborhood
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.HyperSphereNeighborhoodGPL
Deprecated.
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood
Deprecated.
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.old.LocalNeighborhood2
Deprecated.
 
cursor() - Method in class net.imglib2.algorithm.region.localneighborhood.RectangleNeighborhoodGPL
 
cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.AbstractConvertedIterableRandomAccessibleInterval
 
cursor() - Method in class net.imglib2.converter.read.ConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableInterval
 
cursor() - Method in class net.imglib2.converter.readwrite.WriteConvertedIterableRandomAccessibleInterval
 
Cursor<T> - Interface in net.imglib2
A Cursor iterates over a set of Localizable elements, for example the image values at the (integer) pixel positions of an image.
cursor() - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
 
cursor() - Method in class net.imglib2.histogram.Histogram1d
 
cursor() - Method in class net.imglib2.histogram.HistogramNd
 
cursor() - Method in class net.imglib2.img.array.ArrayImg
 
cursor(Interval) - Method in class net.imglib2.img.array.ArrayImg
Create a Cursor to iterate over the given Interval.
cursor() - Method in class net.imglib2.img.cell.AbstractCellImg
 
cursor() - Method in class net.imglib2.img.ImgView
 
cursor(Interval) - Method in class net.imglib2.img.ImgView
 
cursor() - Method in class net.imglib2.img.list.AbstractListImg
 
cursor() - Method in class net.imglib2.img.list.AbstractLongListImg
 
cursor() - Method in class net.imglib2.img.planar.PlanarImg
 
cursor(Interval) - Method in class net.imglib2.img.planar.PlanarImg
Create a Cursor to iterate over the given Interval.
cursor() - Method in class net.imglib2.img.sparse.NtreeImg
 
cursor() - Method in interface net.imglib2.IterableInterval
 
cursor() - Method in interface net.imglib2.IterableRealInterval
Returns a RealCursor that iterates with optimal speed without calculating the location at each iteration step.
cursor() - Method in class net.imglib2.KDTree
 
cursor() - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
cursor(Interval) - Method in class net.imglib2.labeling.LabelingView
Deprecated.
 
cursor() - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
cursor(Interval) - Method in class net.imglib2.labeling.NativeImgLabeling
Deprecated.
 
cursor() - Method in class net.imglib2.PointSampleList
 
cursor() - Method in class net.imglib2.RealPointSampleList
 
cursor() - Method in class net.imglib2.roi.AbstractIterableRegionOfInterest.AROIIterableInterval
Deprecated.
 
cursor() - Method in class net.imglib2.roi.BinaryMaskRegionOfInterest.BMROIIterableInterval
Deprecated.
 
cursor() - Method in class net.imglib2.roi.boundary.Boundary
 
cursor() - Method in class net.imglib2.roi.geometric.PointCollection
 
cursor() - Method in class net.imglib2.roi.labeling.ImgLabeling
 
cursor(Interval) - Method in class net.imglib2.roi.labeling.ImgLabeling
 
cursor() - Method in class net.imglib2.roi.labeling.LabelRegion
 
cursor() - Method in class net.imglib2.roi.util.IterableRandomAccessibleRegion
 
cursor() - Method in class net.imglib2.roi.util.SamplingIterableInterval
 
cursor() - Method in class net.imglib2.script.algorithm.fn.ImgProxy
 
cursor() - Method in class net.imglib2.script.algorithm.fn.IterableIntervalProxy
 
cursor() - Method in class net.imglib2.script.algorithm.fn.RandomAccessibleImgProxy
 
cursor() - Method in class net.imglib2.script.algorithm.fn.RandomAccessibleIntervalImgProxy
 
cursor() - Method in class net.imglib2.script.filter.fn.ConverterImgProxy
Returns a read-only Cursor that transforms the type on the fly from the source image.
cursor() - Method in class net.imglib2.view.IntervalView
 
cursor() - Method in class net.imglib2.view.IterableRandomAccessibleInterval
 
cursor(Interval) - Method in interface net.imglib2.view.iteration.SubIntervalIterable
Create a Cursor to iterate over the given Interval.
CursorFunction - Class in net.imglib2.script.math.fn
TODO
CursorFunction(Cursor<? extends RealType<?>>) - Constructor for class net.imglib2.script.math.fn.CursorFunction
 
cursorOnCells - Variable in class net.imglib2.img.cell.CellCursor
 
cursorOnCells - Variable in class net.imglib2.img.cell.CellLocalizingCursor
 

D

D - Variable in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
The diffusion tensor.
d(int) - Method in class net.imglib2.realtransform.AbstractAffineTransform
 
d(int) - Method in class net.imglib2.realtransform.AbstractScale
 
d(int) - Method in class net.imglib2.realtransform.AbstractTranslation
 
d(int) - Method in interface net.imglib2.realtransform.AffineGet
Get the constant partial differential vector for dimension d.
d(int) - Method in class net.imglib2.realtransform.AffineTransform2D
 
d(int) - Method in class net.imglib2.realtransform.AffineTransform3D
 
d(int) - Method in class net.imglib2.realtransform.ScaleAndTranslation
 
d - Variable in class net.imglib2.script.analysis.fn.NumericResult
 
d - Variable in class net.imglib2.transform.integer.permutation.SingleDimensionPermutationTransform
 
d - Variable in class net.imglib2.view.composite.AbstractComposite
 
d0 - Variable in class net.imglib2.realtransform.AffineTransform2D
 
d0 - Variable in class net.imglib2.realtransform.AffineTransform3D
 
d1 - Variable in class net.imglib2.realtransform.AffineTransform2D
 
d1 - Variable in class net.imglib2.realtransform.AffineTransform3D
 
d2 - Variable in class net.imglib2.realtransform.AffineTransform3D
 
darkfield - Variable in class net.imglib2.script.filter.CorrectFlatField
 
DarkToBright() - Constructor for class net.imglib2.algorithm.componenttree.BuildComponentTree.DarkToBright
 
data - Variable in class net.imglib2.algorithm.linalg.matrix.RealCompositeMatrix
 
data - Variable in class net.imglib2.display.screenimage.awt.ARGBScreenImage
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractByteArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractCharArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractDoubleArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractFloatArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractIntArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractLongArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.AbstractShortArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.IntArray
 
data - Variable in class net.imglib2.img.basictypeaccess.array.ShortArray
 
dataAccess - Variable in class net.imglib2.type.AbstractBitType
 
dataAccess - Variable in class net.imglib2.type.label.BasePairCharType
 
dataAccess - Variable in class net.imglib2.type.logic.BitType
 
dataAccess - Variable in class net.imglib2.type.numeric.ARGBType
 
dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.complex.ComplexFloatType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericByteType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericIntType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericLongType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.GenericShortType
 
dataAccess - Variable in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
dataAccess - Variable in class net.imglib2.type.numeric.NativeARGBDoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.real.DoubleType
 
dataAccess - Variable in class net.imglib2.type.numeric.real.FloatType
 
dec() - Method in class net.imglib2.type.logic.BitType
 
dec() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerBitType
 
dec() - Method in class net.imglib2.type.numeric.integer.AbstractIntegerType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
dec() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
dec() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedIntType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedLongType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedShortType
 
dec() - Method in class net.imglib2.type.numeric.integer.UnsignedVariableBitLengthType
 
dec() - Method in class net.imglib2.type.numeric.real.AbstractRealType
 
dec() - Method in class net.imglib2.type.numeric.real.FloatType
 
dec() - Method in interface net.imglib2.type.numeric.RealType
 
dec() - Method in class net.imglib2.type.volatiles.AbstractVolatileRealType
 
decIndex() - Method in class net.imglib2.type.AbstractBitType
 
decIndex(int) - Method in class net.imglib2.type.AbstractBitType
 
decIndex() - Method in class net.imglib2.type.AbstractNativeType
 
decIndex(int) - Method in class net.imglib2.type.AbstractNativeType
 
decIndex() - Method in class net.imglib2.type.logic.BitType
 
decIndex(int) - Method in class net.imglib2.type.logic.BitType
 
decIndex() - Method in interface net.imglib2.type.NativeType
Decrement the index into the current data array.
decIndex(int) - Method in interface net.imglib2.type.NativeType
Decrease the index into the current data array by decrement steps.
decIndex() - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
decIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexDoubleType
 
decIndex() - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
decIndex(int) - Method in class net.imglib2.type.numeric.complex.ComplexFloatType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericByteType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericIntType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericLongType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.GenericShortType
 
decIndex() - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
decIndex(int) - Method in class net.imglib2.type.numeric.integer.Unsigned128BitType
 
decIndex() - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
decIndex(int) - Method in class net.imglib2.type.numeric.NativeARGBDoubleType
 
decIndex() - Method in class net.imglib2.type.numeric.real.DoubleType
 
decIndex(int) - Method in class net.imglib2.type.numeric.real.DoubleType
 
decIndex() - Method in class net.imglib2.type.numeric.real.FloatType
 
decIndex(int) - Method in class net.imglib2.type.numeric.real.FloatType
 
decrement(long[]) - Method in class net.imglib2.histogram.DiscreteFrequencyDistribution
Decrements the frequency count of a specified bin.
decrement(long) - Method in class net.imglib2.histogram.Histogram1d
Directly decrement a bin by position.
decrement(T) - Method in class net.imglib2.histogram.Histogram1d
Directly decrement a bin by value,
decrement(long[]) - Method in class net.imglib2.histogram.HistogramNd
Directly decrement a bin by position.
decrement(List<T>) - Method in class net.imglib2.histogram.HistogramNd
Directly decrement a bin by value,
DefaultRA(RandomAccessibleInterval<T>[]) - Constructor for class net.imglib2.view.StackView.DefaultRA
 
DefaultRA(RandomAccessibleInterval<T>[], Interval) - Constructor for class net.imglib2.view.StackView.DefaultRA
 
DefaultROIStrategy<T extends Comparable<T>,L extends Labeling<T>> - Class in net.imglib2.labeling
Deprecated.
DefaultROIStrategy(L) - Constructor for class net.imglib2.labeling.DefaultROIStrategy
Deprecated.
 
DefaultROIStrategyFactory<T extends Comparable<T>> - Class in net.imglib2.labeling
Deprecated.
DefaultROIStrategyFactory() - Constructor for class net.imglib2.labeling.DefaultROIStrategyFactory
Deprecated.
 
Defaults - Class in net.imglib2.ui.util
Default rendering settings used by the convenience viewer classes InteractiveViewer2D, InteractiveRealViewer2D, InteractiveViewer3D, and InteractiveRealViewer3D.
Defaults() - Constructor for class net.imglib2.ui.util.Defaults
 
DeformationFieldTransform<T extends RealType<T>> - Class in net.imglib2.realtransform
An n-dimensional deformation field.
DeformationFieldTransform(RandomAccessibleInterval<T>) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform
 
DeformationFieldTransform(RealRandomAccessible<T>) - Constructor for class net.imglib2.realtransform.DeformationFieldTransform
 
deleteLastSlice() - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
Deletes the last slice in the stack.
deleteSlice(int) - Method in class net.imglib2.img.display.imagej.ImageJVirtualStack
Deletes the specified slice, where 1<=n<=nslices.
depth - Variable in class net.imglib2.img.imageplus.ImagePlusImg
 
det() - Method in class net.imglib2.realtransform.AffineTransform2D.AffineMatrix2D
 
det() - Method in class net.imglib2.realtransform.AffineTransform3D.AffineMatrix3D
 
det3x3(double[]) - Static method in class net.imglib2.util.LinAlgHelpers
Calculates the determinant of a 3x3 matrix given as a double[] (row major).
det3x3(double, double, double, double, double, double, double, double, double) - Static method in class net.imglib2.util.LinAlgHelpers
Calculate the determinant of a 3x3 matrix.
dfd() - Method in class net.imglib2.histogram.Histogram1d
Get the discrete frequency distribution associated with this histogram.
dfd() - Method in class net.imglib2.histogram.HistogramNd
Get the discrete frequency distribution associated with this histogram.
diamond(int, int) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a centered flat diamond structuring element for morphological operations.
diamond(int, int, boolean) - Static method in class net.imglib2.algorithm.morphology.StructuringElements
Generates a centered flat diamond structuring element for morphological operations.
DiamondNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodCursor(RandomAccessibleInterval<T>, long, DiamondNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
DiamondNeighborhoodCursor(DiamondNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodCursor
 
DiamondNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodLocalizableSampler(RandomAccessible<T>, long, DiamondNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
DiamondNeighborhoodLocalizableSampler(DiamondNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodLocalizableSampler
 
DiamondNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondNeighborhoodRandomAccess(RandomAccessible<T>, long, DiamondNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
DiamondNeighborhoodRandomAccess(RandomAccessible<T>, long, DiamondNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondNeighborhoodRandomAccess
 
DiamondNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondShape - Class in net.imglib2.algorithm.neighborhood
TODO
DiamondShape(long) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondShape
Constructor
DiamondShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhood<T> - Class in net.imglib2.algorithm.neighborhood
A Neighborhood that iterates through the tips of a multi-dimensional diamond.
DiamondTipsNeighborhood(long[], long, RandomAccess<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhood
Creates a new diamond tip neighborhood.
DiamondTipsNeighborhood.LocalCursor - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodCursor<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodCursor(RandomAccessibleInterval<T>, long, DiamondTipsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
DiamondTipsNeighborhoodCursor(DiamondTipsNeighborhoodCursor<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodCursor
 
DiamondTipsNeighborhoodFactory<T> - Interface in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodLocalizableSampler<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodLocalizableSampler(RandomAccessible<T>, long, DiamondTipsNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
DiamondTipsNeighborhoodLocalizableSampler(DiamondTipsNeighborhoodLocalizableSampler<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodLocalizableSampler
 
DiamondTipsNeighborhoodRandomAccess<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsNeighborhoodRandomAccess(RandomAccessible<T>, long, DiamondTipsNeighborhoodFactory<T>) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
DiamondTipsNeighborhoodRandomAccess(RandomAccessible<T>, long, DiamondTipsNeighborhoodFactory<T>, Interval) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsNeighborhoodRandomAccess
 
DiamondTipsNeighborhoodUnsafe<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsShape - Class in net.imglib2.algorithm.neighborhood
TODO
DiamondTipsShape(long) - Constructor for class net.imglib2.algorithm.neighborhood.DiamondTipsShape
Constructor
DiamondTipsShape.NeighborhoodsAccessible<T> - Class in net.imglib2.algorithm.neighborhood
 
DiamondTipsShape.NeighborhoodsIterableInterval<T> - Class in net.imglib2.algorithm.neighborhood
 
Difference - Class in net.imglib2.script.math
TODO
Difference(IterableRealInterval<S>, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Difference
 
Difference(IFunction, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Difference
 
Difference(IterableRealInterval<R>, IFunction) - Constructor for class net.imglib2.script.math.Difference
 
Difference(IFunction, IFunction) - Constructor for class net.imglib2.script.math.Difference
 
Difference(IterableRealInterval<R>, Number) - Constructor for class net.imglib2.script.math.Difference
 
Difference(Number, IterableRealInterval<R>) - Constructor for class net.imglib2.script.math.Difference
 
Difference(IFunction, Number) - Constructor for class net.imglib2.script.math.Difference
 
Difference(Number, IFunction) - Constructor for class net.imglib2.script.math.Difference
 
Difference(Number, Number) - Constructor for class net.imglib2.script.math.Difference
 
Difference(Object...) - Constructor for class net.imglib2.script.math.Difference
 
DifferenceOfGaussian - Class in net.imglib2.algorithm.dog
Compute Difference-of-Gaussian of a RandomAccessible.
DifferenceOfGaussian() - Constructor for class net.imglib2.algorithm.dog.DifferenceOfGaussian
 
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme
Compute the float increment of the current location, for which is given the density neighborhood and the diffusion tensor neighborhood.
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.ExplicitDiffusionScheme2D
Compute the float increment of the current location, for which is given the density neighborhood and the diffusion tensor neighborhood.
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme2D
 
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.NonNegativityDiffusionScheme3D
 
diffusionScheme(float[], float[][]) - Method in class net.imglib2.algorithm.pde.StandardDiffusionScheme2D