Serialized Form (LOCI Javadocs 0-SNAPSHOT API)

Package <Unnamed>
- Class TestMem extends JFrame implements Serializable
  - Serialized Fields
    - data
```
byte[] data
```
    - memTotal
```
JLabel memTotal
```
    - memMax
```
JLabel memMax
```
    - memFree
```
JLabel memFree
```
    - memUsed
```
JLabel memUsed
```
Package de.sciss.jcollider
- Class de.sciss.jcollider.NodeEvent extends de.sciss.app.BasicEvent implements Serializable
  - Serialized Fields
    - node
```
Node node
```
    - nodeID
```
int nodeID
```
    - nodeType
```
int nodeType
```
    - parentID
```
int parentID
```
    - predID
```
int predID
```
    - succID
```
int succID
```
    - headID
```
int headID
```
    - tailID
```
int tailID
```
    - oldParentID
```
int oldParentID
```
    - oldPredID
```
int oldPredID
```
    - oldSuccID
```
int oldSuccID
```
- Class de.sciss.jcollider.ServerEvent extends de.sciss.app.BasicEvent implements Serializable
  - Serialized Fields
    - server
```
Server server
```

Package de.sciss.jcollider.gui

Class de.sciss.jcollider.gui.EZSlider extends JComponent implements Serializable
- Serialized Fields
  - sync
```
Object sync
```
  - actionListener
```
ActionListener actionListener
```
  - spec
```
ControlSpec spec
```
  - value
```
double value
```
  - ggLabel
```
JLabel ggLabel
```
  - ggSlider
```
JSlider ggSlider
```
  - ggNumber
```
NumberField ggNumber
```
  - ggUnits
```
JLabel ggUnits
```
Class de.sciss.jcollider.gui.LogTextArea extends JTextArea implements Serializable
- Serialized Fields
  - useLogFile
```
boolean useLogFile
```
  - logFile
```
File logFile
```
  - outStream
```
PrintStream outStream
```
  - logFileWriter
```
FileWriter logFileWriter
```
  - totalLength
```
int totalLength
```
  - actionClear
```
AbstractAction actionClear
```

Class de.sciss.jcollider.gui.NodeTreePanel extends JPanel implements Serializable

Serialized Fields

ntm
```
NodeTreeManager ntm
```
ggTree
```
JTree ggTree
```
rootNode
```
Node rootNode
```
selectionContainsSynths
```
boolean selectionContainsSynths
```
selectionContainsGroups
```
boolean selectionContainsGroups
```
selectionContainsPlaying
```
boolean selectionContainsPlaying
```
selectionContainsPausing
```
boolean selectionContainsPausing
```
collSelectedNodes
```
List<E> collSelectedNodes
```

actionPauseResume

de.sciss.jcollider.gui.NodeTreePanel.ActionPauseResume actionPauseResume

actionFree

de.sciss.jcollider.gui.NodeTreePanel.ActionFree actionFree

actionFreeAll

de.sciss.jcollider.gui.NodeTreePanel.ActionFreeAll actionFreeAll

actionDeepFree

de.sciss.jcollider.gui.NodeTreePanel.ActionDeepFree actionDeepFree

actionTrace

de.sciss.jcollider.gui.NodeTreePanel.ActionTrace actionTrace

Class de.sciss.jcollider.gui.NumberEvent extends de.sciss.app.BasicEvent implements Serializable
- Serialized Fields
  - number
```
Number number
```
  - adjusting
```
boolean adjusting
```

Class de.sciss.jcollider.gui.NumberField extends JFormattedTextField implements Serializable

Serialized Fields

space
```
NumberSpace space
```
value
```
Number value
```
numberFormat
```
NumberFormat numberFormat
```
flags
```
int flags
```
em
```
de.sciss.app.EventManager em
```
factory
```
DefaultFormatterFactory factory
```
numberFormatter
```
NumberFormatter numberFormatter
```
enc_this
```
NumberField enc_this
```
actionLooseFocus
```
AbstractAction actionLooseFocus
```

Class de.sciss.jcollider.gui.ServerPanel extends JPanel implements Serializable

Serialized Fields

server
```
Server server
```
enc_this
```
ServerPanel enc_this
```
lbBigName
```
JTextField lbBigName
```

actionBoot

de.sciss.jcollider.gui.ServerPanel.ActionBoot actionBoot

ourFrame
```
JFrame ourFrame
```
ggScroll
```
JScrollPane ggScroll
```
showHide
```
boolean showHide
```
lbCntAvgCPU
```
JLabel lbCntAvgCPU
```
lbCntPeakCPU
```
JLabel lbCntPeakCPU
```
lbCntUGens
```
JLabel lbCntUGens
```
lbCntSynths
```
JLabel lbCntSynths
```
lbCntGroups
```
JLabel lbCntGroups
```
lbCntSynthDefs
```
JLabel lbCntSynthDefs
```

Class de.sciss.jcollider.gui.SynthDefDiagram extends JFrame implements Serializable
- Serialized Fields
  - fntGUI
```
Font fntGUI
```

Package loci.deepzoom.util.xmllight
- Class loci.deepzoom.util.xmllight.XMLException extends Exception implements Serializable
Package loci.deepzoom.workflow.plugin
- Class loci.deepzoom.workflow.plugin.PluginClassException extends RuntimeException implements Serializable
- Class loci.deepzoom.workflow.plugin.TeardownException extends RuntimeException implements Serializable
Package loci.jar2lib
- Class loci.jar2lib.VelocityException extends Exception implements Serializable
Package loci.multiinstanceplugin
- Class loci.multiinstanceplugin.PluginClassException extends RuntimeException implements Serializable
- Class loci.multiinstanceplugin.TeardownException extends RuntimeException implements Serializable
Package loci.multithreadedplugin
- Class loci.multithreadedplugin.TeardownException extends RuntimeException implements Serializable

Package loci.slim

Class loci.slim.ColorWidget extends JPanel implements Serializable

Serialized Fields

map
```
ScalarMap map
```
widget
```
ColorMapWidget widget
```
cOverride
```
JCheckBox cOverride
```
cMinValue
```
JTextField cMinValue
```
cMaxValue
```
JTextField cMaxValue
```
lutLoad
```
JButton lutLoad
```
lutSave
```
JButton lutSave
```
lutPresets
```
JButton lutPresets
```
lutsMenu
```
JPopupMenu lutsMenu
```
validColor
```
Color validColor
```
updating
```
boolean updating
```

Class loci.slim.MouseBehaviorButtons extends JPanel implements Serializable

Serialized Fields

display
```
DisplayImpl display
```
rotate
```
JToggleButton rotate
```
zoom
```
JToggleButton zoom
```
pan
```
JToggleButton pan
```
probe
```
JToggleButton probe
```
region
```
JToggleButton region
```

Class loci.slim.TwoDPane extends JPanel implements Serializable

Serialized Fields

slim
```
SlimPlotter slim
```
iPlot
```
DisplayImpl iPlot
```
imageMap
```
ScalarMap imageMap
```
imageRef
```
DataReferenceImpl imageRef
```
ac
```
AnimationControl ac
```
data
```
SlimData data
```
types
```
SlimTypes types
```
intensityFields
```
FlatField[] intensityFields
```
lifetimeFields
```
FlatField[] lifetimeFields
```
roiGrid
```
float[][] roiGrid
```
curveSet
```
UnionSet curveSet
```
roiSet
```
Irregular2DSet roiSet
```
roiRef
```
DataReferenceImpl roiRef
```
roiCount
```
int roiCount
```
roiPercent
```
double roiPercent
```
roiX
```
int roiX
```
roiY
```
int roiY
```
roiMask
```
boolean[][] roiMask
```
mbButtons
```
MouseBehaviorButtons mbButtons
```
progress
```
JProgressBar progress
```
startStopButton
```
JButton startStopButton
```
cSlider
```
JSlider cSlider
```
intensityMode
```
JRadioButton intensityMode
```
lifetimeMode
```
JRadioButton lifetimeMode
```
projectionMode
```
JRadioButton projectionMode
```
emissionMode
```
JRadioButton emissionMode
```
cToggle
```
JCheckBox cToggle
```
colorWidget
```
ColorWidget colorWidget
```
iterField
```
JTextField iterField
```
fpsField
```
JTextField fpsField
```
curveRenderers
```
ICurveRenderer[] curveRenderers
```
curveImages
```
float[][][] curveImages
```
switcher
```
RendererSwitcher switcher
```
curveThread
```
Thread curveThread
```
progressRefresh
```
Timer progressRefresh
```
lifetimeRefresh
```
Timer lifetimeRefresh
```
lifetimeActive
```
boolean lifetimeActive
```
drag
```
boolean drag
```

Package loci.slim.fit
- Class loci.slim.fit.CurveEvent extends EventObject implements Serializable
  - Serialized Fields
    - value
```
int value
```
      Progress value for the event.
    - max
```
int max
```
      Progress maximum for the event.
    - message
```
String message
```
      String message describing the event.

Package loci.sonification

Class loci.sonification.Sonification extends JFrame implements Serializable

Serialized Fields

defTables

loci.sonification.Sonification.SynthDefTable[] defTables

selectedTable

loci.sonification.Sonification.SynthDefTable selectedTable

MemoryDefCollection
```
List<E> MemoryDefCollection
```
synth
```
Synth synth
```
server
```
Server server
```
nw
```
NodeWatcher nw
```
grpAll
```
Group grpAll
```
enc_this
```
Sonification enc_this
```

Package loci.visbio
- Class loci.visbio.BioDropHandler extends TransferHandler implements Serializable
  - Serialized Fields
    - bio
```
VisBioFrame bio
```
      Associated VisBio frame.
- Class loci.visbio.BioTask extends JPanel implements Serializable
  - Serialized Fields
    - tm
```
TaskManager tm
```
      Task manager associated with the task.
    - stopped
```
boolean stopped
```
      Whether the task has been stopped.
    - title
```
JLabel title
```
      Label displaying name of the task.
    - status
```
JLabel status
```
      Label displaying current status message for the task.
    - progress
```
JProgressBar progress
```
      Progress bar displaying the task's progress.
    - stop
```
JButton stop
```
      Button for halting and resuming the task.
- Class loci.visbio.ControlPanel extends JPanel implements Serializable
  - Serialized Fields
    - lm
```
LogicManager lm
```
      Associated logic manager.
    - name
```
String name
```
      Name of this control panel.
    - tip
```
String tip
```
      Tip for this control panel.
- Class loci.visbio.DoubleSlider extends JScrollBar implements Serializable
  - Serialized Fields
    - min
```
double min
```
    - max
```
double max
```
    - step
```
double step
```
- Class loci.visbio.OrthoStack extends JPanel implements Serializable
  - Serialized Fields
    - imp
```
ij.ImagePlus imp
```
    - display
```
DisplayImplJ3D display
```
    - physicalX
```
double physicalX
```
    - physicalY
```
double physicalY
```
    - physicalZ
```
double physicalZ
```
    - physicalMax
```
double physicalMax
```
    - stretchSlider
```
DoubleSlider stretchSlider
```
    - angleSlider
```
DoubleSlider angleSlider
```
    - zoomSlider
```
DoubleSlider zoomSlider
```
    - parallelToggle
```
JCheckBox parallelToggle
```
    - boundingBoxToggle
```
JCheckBox boundingBoxToggle
```
    - snapshotButton
```
JButton snapshotButton
```
- Class loci.visbio.SystemControls extends ControlPanel implements Serializable
  - Serialized Fields
    - memField
```
JTextField memField
```
      Memory usage text field.
    - lafField
```
JTextField lafField
```
      Look & Feel text field.
    - memUsage
```
String memUsage
```
      Current memory usage.
- Class loci.visbio.TaskControls extends ControlPanel implements Serializable
  - Serialized Fields
    - pane
```
JPanel pane
```
      Pane containing task widgets.
    - scroll
```
JScrollPane scroll
```
      Scroll pane wrapping pane.
- Class loci.visbio.VisBioEvent extends EventObject implements Serializable
  - Serialized Fields
    - eventType
```
int eventType
```
      The type of this event.
    - message
```
String message
```
      String message associated with this event.
    - undoable
```
boolean undoable
```
      Flag indicating whether event is undoable.
- Class loci.visbio.VisBioFrame extends GUIFrame implements Serializable
  - Serialized Fields
    - managers
```
Vector<E> managers
```
      Logic managers.
    - splash
```
SplashScreen splash
```
      Associated splash screen.
    - icon
```
Image icon
```
      VisBio program icon.
    - instanceServer
```
InstanceServer instanceServer
```
      Instance server for this instance of VisBio.
Package loci.visbio.data
- Class loci.visbio.data.CollapseWidget extends JPanel implements Serializable
  - Serialized Fields
    - collapse
```
CollapseTransform collapse
```
      Associated dimensional collapse transform.
    - axes
```
BioComboBox axes
```
      Dropdown combo box listing available dimensions for collapse.
- Class loci.visbio.data.DataControls extends ControlPanel implements Serializable
  - Serialized Fields
    - dataTree
```
JTree dataTree
```
      Tree of data transforms.
    - dataModel
```
DefaultTreeModel dataModel
```
      Model for data transform tree.
    - dataRoot
```
DefaultMutableTreeNode dataRoot
```
      Root node of tree structure.
    - display
```
JButton display
```
      Button for displaying data.
    - editData
```
JButton editData
```
      Button for editing data parameters.
    - export
```
JButton export
```
      Button for exporting data.
    - removeData
```
JButton removeData
```
      Button for removing data from the tree.
    - dataInfo
```
JEditorPane dataInfo
```
      Data information display panel.
    - display2D
```
JMenuItem display2D
```
      New 2D display menu item for Displays popup menu.
    - display3D
```
JMenuItem display3D
```
      New 3D display menu item for Displays popup menu.
    - exporter
```
ExportPane exporter
```
      Pane for configuring disk export parameters.
    - sender
```
SendToIJPane sender
```
      Pane for configuring ImageJ export parameters.
    - frameTable
```
Hashtable<K,V> frameTable
```
      Table of control frames corresponding to each data transform.
- Class loci.visbio.data.DatasetWidget extends JPanel implements Serializable
  - Serialized Fields
    - dataset
```
Dataset dataset
```
      Associated dataset.
    - metadata
```
Hashtable<K,V> metadata
```
      Dataset's associated metadata.
    - keys
```
String[] keys
```
      Metadata hashtable's sorted key lists.
    - metaTable
```
JTable metaTable
```
      Table listing metadata fields.
    - metaTableModel
```
DefaultTableModel metaTableModel
```
      Table model backing metadata table.
- Class loci.visbio.data.ExportPane extends WizardPane implements Serializable
  - Serialized Fields
    - folderField
```
JTextField folderField
```
      Folder on disk text field.
    - chooseButton
```
JButton chooseButton
```
      Button for choosing output folder.
    - patternField
```
JTextField patternField
```
      File pattern text field.
    - formatBox
```
BioComboBox formatBox
```
      File format combo box.
    - second
```
JPanel second
```
      Panel for dynamic second page components.
    - leadingZeroes
```
JCheckBox leadingZeroes
```
      Check box indicating whether file numbering should use leading zeroes.
    - fps
```
JTextField fps
```
      Frames per second for movie formats.
    - lzw
```
JCheckBox lzw
```
      Checkbox for LZW compression (TIFF only).
    - letterBoxes
```
BioComboBox[] letterBoxes
```
      Combo boxes for mapping each star to corresponding dimensional axes.
    - third
```
JPanel third
```
      Panel for dynamic third page components.
    - summary
```
JEditorPane summary
```
      Pane containing export summary.
    - bio
```
VisBioFrame bio
```
      Associated VisBio frame (for displaying export status).
    - saver
```
BufferedImageWriter saver
```
      Writer for saving images to disk.
    - trans
```
ImageTransform trans
```
      Data object from which exportable data will be derived.
    - tokens
```
String[] tokens
```
      File pattern, divided into tokens.
    - stars
```
int stars
```
      Number of "stars" in the file pattern.
    - maps
```
int[] maps
```
      Mapping from each star to corresponding dimensional axis.
    - excl
```
int excl
```
      Excluded index (not mapped to a star).
    - numFiles
```
int numFiles
```
      Number of total files to export.
- Class loci.visbio.data.ProjectionWidget extends JPanel implements Serializable
  - Serialized Fields
    - projection
```
ProjectionTransform projection
```
      Associated maximum intensity projection transform.
    - axes
```
BioComboBox axes
```
      Dropdown combo box listing available dimensions for projection.
- Class loci.visbio.data.SamplingWidget extends JPanel implements Serializable
  - Serialized Fields
    - sampling
```
DataSampling sampling
```
      Associated data sampling.
    - widthField
```
JTextField widthField
```
      Text field for image width.
    - heightField
```
JTextField heightField
```
      Text field for image height.
    - minFields
```
JTextField[] minFields
```
      Text fields for minimum dimensional values.
    - maxFields
```
JTextField[] maxFields
```
      Text fields for maximum dimensional values.
    - stepFields
```
JTextField[] stepFields
```
      Text fields for dimensional step values.
    - rangeBoxes
```
JCheckBox[] rangeBoxes
```
      Check boxes for included range components.
- Class loci.visbio.data.SendToIJPane extends DialogPane implements Serializable
  - Serialized Fields
    - bio
```
VisBioFrame bio
```
      Associated VisBio frame (for displaying status).
    - trans
```
ImageTransform trans
```
      Data object from which exportable data will be derived.
    - bsw
```
BioSlideWidget[] bsw
```
      Slider widgets specifying which dimensional position to send.
    - stackAxis
```
BioComboBox stackAxis
```
      Axis to use for ImageJ stack.
- Class loci.visbio.data.SliceWidget extends JPanel implements Serializable
  - Serialized Fields
    - slice
```
ArbitrarySlice slice
```
      Associated arbitrary slice.
    - axes
```
BioComboBox axes
```
      Dropdown combo box listing available dimensions to slice through.
    - yaw
```
JSlider yaw
```
      Slider for adjusting yaw.
    - yawValue
```
JLabel yawValue
```
      Label for current yaw value.
    - pitch
```
JSlider pitch
```
      Slider for adjusting pitch.
    - pitchValue
```
JLabel pitchValue
```
      Label for current pitch value.
    - location
```
JSlider location
```
      Slider for adjusting location.
    - locationValue
```
JLabel locationValue
```
      Label for current location value.
    - res
```
JSlider res
```
      Slider for adjusting resolution.
    - resValue
```
JLabel resValue
```
      Label for current resolution value.
    - showLine
```
JCheckBox showLine
```
      Check box for whether slicing line is shown.
    - recompute
```
JCheckBox recompute
```
      Check box for whether slice is recomputed on the fly.
- Class loci.visbio.data.SpectralWidget extends JPanel implements Serializable
  - Serialized Fields
    - mapping
```
SpectralTransform mapping
```
      Associated spectral mapping.
    - weights
```
JSlider[][] weights
```
      Weighted sliders for spectral transform.
    - labels
```
JLabel[][] labels
```
      Labels indicating current slider values.
- Class loci.visbio.data.TransformEvent extends EventObject implements Serializable
  - Serialized Fields
    - id
```
int id
```
      The type of transform event.
Package loci.visbio.ext
- Class loci.visbio.ext.FunctionWidget extends JPanel implements Serializable
  - Serialized Fields
    - function
```
ExternalFunction function
```
      Associated external function transform.
    - paramFields
```
JTextField[] paramFields
```
      Fields corresponding to function parameters.
Package loci.visbio.help
- Class loci.visbio.help.HelpTopic extends DefaultMutableTreeNode implements Serializable
  - Serialized Fields
    - source
```
String source
```
      Content source for this help topic.
- Class loci.visbio.help.HelpWindow extends JFrame implements Serializable
  - Serialized Fields
    - root
```
HelpTopic root
```
      Help topic tree root node.
    - topics
```
JTree topics
```
      Tree of help topics.
    - pane
```
JEditorPane pane
```
      Pane containing the current help topic.
Package loci.visbio.overlays
- Class loci.visbio.overlays.OverlayWidget extends JPanel implements Serializable
  - Serialized Fields
    - overlay
```
OverlayTransform overlay
```
      Associated overlay object.
    - buttonGroup
```
ButtonGroup buttonGroup
```
      Button group ensuring only one tool can be selected at a time.
    - tools
```
Vector<E> tools
```
      List of overlay tools.
    - buttons
```
Vector<E> buttons
```
      List of buttons for each overlay tool.
    - refreshTimer
```
Timer refreshTimer
```
      Timer for refreshing widget components 5 times per second.
    - needRefresh
```
boolean needRefresh
```
      Flag indicating widget components need to be refreshed.
    - ignoreEvents
```
boolean ignoreEvents
```
      Flag indicating AWT/Swing events should be ignored, used for programmatic update of GUI components.
    - overlaySaveBox
```
JFileChooser overlaySaveBox
```
      File chooser for saving overlays.
    - overlayLoadBox
```
JFileChooser overlayLoadBox
```
      File chooser for loading overlays.
    - overlayXLSBox
```
JFileChooser overlayXLSBox
```
      File chooser for exporting overlays to .xls format.
    - currentFont
```
JTextField currentFont
```
      Text field indicating current font.
    - chooseFont
```
JButton chooseFont
```
      Button for bringing up font chooser.
    - overlayList
```
JList<E> overlayList
```
      List of overlays.
    - overlayListModel
```
DefaultListModel<E> overlayListModel
```
      List model for overlay list.
    - remove
```
JButton remove
```
      Button for removing selected overlays.
    - copy
```
JButton copy
```
      Button for copying selected overlays to the clipboard.
    - paste
```
JButton paste
```
      Button for pasting copied overlays onto the current position.
    - dist
```
JButton dist
```
      Button for distributing an overlay across all positions between the copied position and the one selected.
    - load
```
JButton load
```
      Button for loading overlays from disk.
    - save
```
JButton save
```
      Button for saving overlays to disk.
    - export
```
JButton export
```
      Button for exporting overlays to .xls on disk.
    - x1
```
JTextField x1
```
      Text fields for (X, Y) coordinate pairs.
    - y1
```
JTextField y1
```
      Text fields for (X, Y) coordinate pairs.
    - x2
```
JTextField x2
```
      Text fields for (X, Y) coordinate pairs.
    - y2
```
JTextField y2
```
      Text fields for (X, Y) coordinate pairs.
    - text
```
JTextField text
```
      Text field for text labels.
    - color
```
JButton color
```
      Button for choosing overlay color.
    - filled
```
JCheckBox filled
```
      Check box indicating whether overlay should be filled or hollow.
    - groupList
```
BioComboBox groupList
```
      Combo box for selecting an overlay group.
    - newGroup
```
JButton newGroup
```
      Button for creating a new overlay group.
    - notes
```
JTextField notes
```
      Text field for miscellaneous notes.
    - stats
```
JTextArea stats
```
      Text area for overlay statistics.
- Class loci.visbio.overlays.SpreadsheetLaunchException extends Exception implements Serializable
- Class loci.visbio.overlays.StatsOptionsPane extends JPanel implements Serializable
  - Serialized Fields
    - checkBoxes
```
JCheckBox[][] checkBoxes
```
      All of the check boxes contained in all tabs.
    - tabs
```
JTabbedPane tabs
```
      The tabbed pane contained in this object.
Package loci.visbio.state
- Class loci.visbio.state.OptionPane extends DialogPane implements Serializable
  - Serialized Fields
    - om
```
OptionManager om
```
      Options manager.
    - tabs
```
JTabbedPane tabs
```
      Tabbed pane.
    - noTabs
```
JPanel noTabs
```
      Non-tabbed pane.
- Class loci.visbio.state.SaveException extends Exception implements Serializable
  - Serialized Fields
    - exc
```
Exception exc
```
      The exception upon which the save exception is based.
Package loci.visbio.util
- Class loci.visbio.util.BioArrowButton extends BasicArrowButton implements Serializable
  - Serialized Fields
    - size
```
Dimension size
```
      Size of the arrow button in pixels.
- Class loci.visbio.util.BioComboBox extends JComboBox implements Serializable
- Class loci.visbio.util.BreakawayPanel extends JPanel implements Serializable
  - Serialized Fields
    - parent
```
Container parent
```
      Parent container.
    - owner
```
Window owner
```
      Owner window for breakaway panel and its parent.
    - window
```
JFrame window
```
      Floating window containing the breakaway panel.
    - pane
```
Container pane
```
      Pane to which GUI components can be added to the breakaway panel.
    - scrollPane
```
JScrollPane scrollPane
```
      Scroll pane (if any).
    - edge
```
String edge
```
      The edge upon which the breakaway panel lies.
    - autoSize
```
boolean autoSize
```
      Flag indicating whether owner window gets intelligently resized.
    - top
```
BioArrowButton top
```
      Arrow buttons.
    - bottom
```
BioArrowButton bottom
```
      Arrow buttons.
    - left
```
BioArrowButton left
```
      Arrow buttons.
    - right
```
BioArrowButton right
```
      Arrow buttons.
- Class loci.visbio.util.DialogPane extends JPanel implements Serializable
  - Serialized Fields
    - ok
```
JButton ok
```
      Ok button.
    - cancel
```
JButton cancel
```
      Cancel button.
    - dialog
```
JDialog dialog
```
      Currently visible dialog.
    - pane
```
JPanel pane
```
      Content pane for dialog.
    - title
```
String title
```
      Dialog's title.
    - rval
```
int rval
```
      Return value of dialog.
- Class loci.visbio.util.FontChooserPane extends DialogPane implements Serializable
  - Serialized Fields
    - fontName
```
BioComboBox fontName
```
      Dropdown combo box containing available font names.
    - fontBold
```
JCheckBox fontBold
```
      Checkbox for indicating font should be in bold face.
    - fontItalic
```
JCheckBox fontItalic
```
      Checkbox for indicating font should be in italics.
    - fontSize
```
JSpinner fontSize
```
      Spinner for selecting font size.
    - previewText
```
JTextArea previewText
```
      Text area containing preview text with the chosen font settings.
- Class loci.visbio.util.MessagePane extends DialogPane implements Serializable
  - Serialized Fields
    - always
```
JCheckBox always
```
      Checkbox within dialog.
- Class loci.visbio.util.OutputEvent extends AWTEvent implements Serializable
- Class loci.visbio.util.SplashScreen extends JWindow implements Serializable
  - Serialized Fields
    - msgLabel
```
JLabel msgLabel
```
      Label containing (bottom line of) the splash message.
    - bar
```
JProgressBar bar
```
      Progress bar.
    - task
```
int task
```
      Current task number.
    - tasks
```
int tasks
```
      Total number of tasks.
- Class loci.visbio.util.WarningPane extends MessagePane implements Serializable
- Class loci.visbio.util.WizardPane extends DialogPane implements Serializable
  - Serialized Fields
    - pages
```
JPanel[] pages
```
      Panels representing the wizard's pages.
    - next
```
JButton next
```
      Wizard's next button.
    - back
```
JButton back
```
      Wizard's back button.
    - page
```
int page
```
      The current page.
Package loci.visbio.view
- Class loci.visbio.view.BioColorWidget extends JPanel implements Serializable
  - Serialized Fields
    - color
```
JLabel color
```
      Label naming color component.
    - box
```
BioComboBox box
```
      Combo box listing available range components.
    - scalars
```
Vector<E> scalars
```
      List of range component scalars.
    - model
```
int model
```
      Color model: RGB or HSV.
    - type
```
int type
```
      Color type: 1=Red/Hue, 2=Green/Saturation, 3=Blue/Value.
- Class loci.visbio.view.BioSlideWidget extends JPanel implements Serializable
  - Serialized Fields
    - current
```
JLabel current
```
      Label indicating current slider value.
    - slider
```
JSlider slider
```
      Main slider component.
    - previous
```
JButton previous
```
      Previous step button.
    - next
```
JButton next
```
      Next step button.
    - name
```
String name
```
      Slider name.
    - numbers
```
String[] numbers
```
      Slider labels.
    - count
```
int count
```
      Number of ticks this slider has.
    - transforms
```
Vector<E> transforms
```
      Transforms affected by this widget.
    - indices
```
Vector<E> indices
```
      Indices into affected transforms.
- Class loci.visbio.view.CapturePanel extends JPanel implements Serializable
  - Serialized Fields
    - handler
```
CaptureHandler handler
```
      Capture handler for this capture window.
    - posList
```
JList<E> posList
```
      Position list.
    - posListModel
```
DefaultListModel<E> posListModel
```
      Position list model.
    - remove
```
JButton remove
```
      Button for removing selected position.
    - moveUp
```
JButton moveUp
```
      Button for moving selected position upward.
    - moveDown
```
JButton moveDown
```
      Button for moving selected position downward.
    - speed
```
JSlider speed
```
      Slider for adjusting movie speed.
    - fps
```
JSpinner fps
```
      Output movie frames per second.
    - smooth
```
JCheckBox smooth
```
      Check box for animation smoothness.
    - progress
```
JProgressBar progress
```
      Progress bar for movie capture operation.
- Class loci.visbio.view.ColorPane extends DialogPane implements Serializable
  - Serialized Fields
    - fileBox
```
JFileChooser fileBox
```
      LUT file chooser.
    - preview
```
DisplayImpl preview
```
      Color preview display.
    - widgetPane
```
JPanel widgetPane
```
      GUI panel for color table widget.
    - brightness
```
JSlider brightness
```
      Slider for level of brightness.
    - brightnessValue
```
JLabel brightnessValue
```
      Label for current brightness value.
    - contrast
```
JSlider contrast
```
      Slider for level of contrast.
    - contrastValue
```
JLabel contrastValue
```
      Label for current contrast value.
    - opacity
```
JSlider opacity
```
      Slider for level of opacity.
    - opacityValue
```
JLabel opacityValue
```
      Label for current opacity value.
    - constant
```
JRadioButton constant
```
      Opacity model options.
    - curved
```
JRadioButton curved
```
      Opacity model options.
    - rgb
```
JRadioButton rgb
```
      Color model options.
    - hsv
```
JRadioButton hsv
```
      Color model options.
    - composite
```
JRadioButton composite
```
      Color model options.
    - red
```
BioColorWidget red
```
      Color map widgets.
    - green
```
BioColorWidget green
```
      Color map widgets.
    - blue
```
BioColorWidget blue
```
      Color map widgets.
    - selector
```
BioComboBox selector
```
      Combo box for choosing color widgets.
    - fixed
```
JCheckBox fixed
```
      Option for fixed color scaling.
    - loVal
```
JTextField loVal
```
      Text field for low color scale value.
    - toLabel
```
JLabel toLabel
```
      Label for fixed color scale.
    - hiVal
```
JTextField hiVal
```
      Text field for high color scale value.
    - lutLoad
```
JButton lutLoad
```
      Button for loading color look-up table.
    - lutSave
```
JButton lutSave
```
      Button for saving color look-up table.
    - lutsMenu
```
JPopupMenu lutsMenu
```
      Popup menu for selecting a preset color look-up table.
    - lutPresets
```
JButton lutPresets
```
      Button for selecting a color look-up table from a list of presets.
    - handler
```
ColorHandler handler
```
      Color handler for this color pane.
    - maps
```
ScalarMap[] maps
```
      List of mappings from range components to RGB.
    - ignore
```
boolean ignore
```
      Should changes to the color components be ignored?
- Class loci.visbio.view.DisplayControls extends ControlPanel implements Serializable
  - Serialized Fields
    - displayList
```
JList<E> displayList
```
      List of displays.
    - listModel
```
DefaultListModel<E> listModel
```
      Display list model.
    - add2D
```
JButton add2D
```
      Button for adding a 2D display to the list.
    - add3D
```
JButton add3D
```
      Button for adding a 3D display to the list.
    - show
```
JButton show
```
      Button for showing a display onscreen.
    - remove
```
JButton remove
```
      Button for removing a display from the list.
- Class loci.visbio.view.DisplayWindow extends JFrame implements Serializable
  - Serialized Fields
    - name
```
String name
```
      Name of this display.
    - threeD
```
boolean threeD
```
      True if this display is 3D, false if 2D.
    - viewHandler
```
ViewHandler viewHandler
```
      Handles logic for controlling the VisAD display's view.
    - captureHandler
```
CaptureHandler captureHandler
```
      Handles logic for capturing the display screenshots and movies.
    - transformHandler
```
TransformHandler transformHandler
```
      Handles logic for linking data transforms to the VisAD display.
    - manager
```
DisplayManager manager
```
      Associated display manager.
    - display
```
DisplayImpl display
```
      Associated VisAD display.
    - sliders
```
JPanel sliders
```
      Panel containing dimensional slider widgets.
    - controls
```
BreakawayPanel controls
```
      Breakaway panel for display controls.
    - initialEdge
```
String initialEdge
```
      Initial edge of breakaway panel.
    - string
```
String string
```
      String representation of this display.
- Class loci.visbio.view.SliceToggler extends DialogPane implements Serializable
  - Serialized Fields
    - begin
```
JTextField begin
```
      Starting slice index.
    - end
```
JTextField end
```
      Ending slice index.
    - step
```
JTextField step
```
      Slice step increment.
    - visible
```
JRadioButton visible
```
      Option for showing selected slices.
    - hidden
```
JRadioButton hidden
```
      Option for hiding selected slices.
    - handler
```
StackHandler handler
```
      Stack handler for this slice toggler.
    - transform
```
DataTransform transform
```
      Data transform upon which this slice toggler operates.
- Class loci.visbio.view.StackPanel extends TransformPanel implements Serializable
  - Serialized Fields
    - stackLabel
```
JLabel stackLabel
```
      Label for stack axis combo box.
    - stackBox
```
BioComboBox stackBox
```
      List of axes for stacking.
    - sliceToggler
```
SliceToggler sliceToggler
```
      Dialog box for toggling individual slices.
    - toggleSlices
```
JButton toggleSlices
```
      Button for bringing up slice toggler dialog box.
    - sliceVisible
```
JCheckBox sliceVisible
```
      Checkbox for choosing whether current slice is visible.
    - highlight
```
JCheckBox highlight
```
      Checkbox for choosing whether current slice is highlighted.
    - render
```
JCheckBox render
```
      Checkbox indicating whether volume rendering is enabled.
    - renderRes
```
JSpinner renderRes
```
      Spinner for volume rendering resolution.
- Class loci.visbio.view.TransformPanel extends JPanel implements Serializable
  - Serialized Fields
    - handler
```
TransformHandler handler
```
      Transform handler upon which GUI controls operate.
    - transformList
```
JList<E> transformList
```
      List of linked data transforms.
    - transformModel
```
DefaultListModel<E> transformModel
```
      List model for linked data transform list.
    - visible
```
JCheckBox visible
```
      Checkbox for toggling data transform visibility.
    - removeTransform
```
JButton removeTransform
```
      Button for removing selected data transform.
    - dataColors
```
JButton dataColors
```
      Button for editing colors for the selected data transform.
    - dataControls
```
JButton dataControls
```
      Button for showing controls for the selected data transform.
    - moveUp
```
JButton moveUp
```
      Button for moving data objects upward in the list.
    - moveDown
```
JButton moveDown
```
      Button for moving data objects downward in the list.
    - delayTime
```
JSpinner delayTime
```
      Spinner for adjusting burn-in delay.
    - leftRightBox
```
BioComboBox leftRightBox
```
      List of axes for left/right arrow mapping.
    - upDownBox
```
BioComboBox upDownBox
```
      List of axes for up/down arrow mapping.
    - animate
```
JButton animate
```
      Button for toggling status of animation.
    - fps
```
JSpinner fps
```
      Spinner for adjusting animation rate.
    - animBox
```
BioComboBox animBox
```
      List of axes for animation.
- Class loci.visbio.view.ViewPanel extends JPanel implements Serializable
  - Serialized Fields
    - handler
```
ViewHandler handler
```
      View handler upon which GUI controls operate.
    - aspectX
```
JTextField aspectX
```
      Aspect ratio X component text field.
    - aspectY
```
JTextField aspectY
```
      Aspect ratio Y component text field.
    - aspectZ
```
JTextField aspectZ
```
      Aspect ratio Z component text field.

Serialized Form

Package <Unnamed>

Class TestMem extends JFrame implements Serializable

Serialized Fields

data

memTotal

memMax

memFree

memUsed

Package de.sciss.jcollider

Class de.sciss.jcollider.NodeEvent extends de.sciss.app.BasicEvent implements Serializable

Serialized Fields

node

nodeID

nodeType

parentID

predID

succID

headID

tailID

oldParentID

oldPredID

oldSuccID

Class de.sciss.jcollider.ServerEvent extends de.sciss.app.BasicEvent implements Serializable

Serialized Fields

server

Package de.sciss.jcollider.gui

Class de.sciss.jcollider.gui.EZSlider extends JComponent implements Serializable

Serialized Fields

sync

actionListener

spec

value

ggLabel

ggSlider

ggNumber

ggUnits

Class de.sciss.jcollider.gui.LogTextArea extends JTextArea implements Serializable

Serialized Fields

useLogFile

logFile

outStream

logFileWriter

totalLength

actionClear

Class de.sciss.jcollider.gui.NodeTreePanel extends JPanel implements Serializable

Serialized Fields

ntm

ggTree

rootNode

selectionContainsSynths

selectionContainsGroups

selectionContainsPlaying

selectionContainsPausing

collSelectedNodes

actionPauseResume

actionFree

actionFreeAll

actionDeepFree

actionTrace

Class de.sciss.jcollider.gui.NumberEvent extends de.sciss.app.BasicEvent implements Serializable

Serialized Fields

number

adjusting

Class de.sciss.jcollider.gui.NumberField extends JFormattedTextField implements Serializable

Serialized Fields

space

value

numberFormat

flags

em

factory

numberFormatter

enc_this

actionLooseFocus

Class de.sciss.jcollider.gui.ServerPanel extends JPanel implements Serializable

Serialized Fields

server

enc_this

lbBigName