Package | Description |
---|---|
de.unihalle.informatik.MiToBo.apps.neurites2D | |
de.unihalle.informatik.MiToBo.core.datatypes |
Provides basic datatypes for MiToBo.
|
de.unihalle.informatik.MiToBo.core.imageJ |
Provides convenience classes for interaction with ImageJ system.
|
de.unihalle.informatik.MiToBo.features |
Provides operators for calculating features from given images, e.g., statistical
indicators or texture measures.
|
de.unihalle.informatik.MiToBo.features.contours | |
de.unihalle.informatik.MiToBo.io.importer | |
de.unihalle.informatik.MiToBo.segmentation.contours.extraction |
Provides classes for performing contour extractions from regions or other
image elements.
|
de.unihalle.informatik.MiToBo.visualization.drawing |
Provides operators to visualize data types.
|
Modifier and Type | Method and Description |
---|---|
MTBContour2DSet |
NeuriteDetector2DAlgos.preSegmentation()
Method for pre-segmentation.
|
Modifier and Type | Method and Description |
---|---|
void |
NeuriteDetector2DAlgos.neuriteDetection(MTBContour2DSet initContourSet)
Main method for 2D neurite detection.
|
Modifier and Type | Method and Description |
---|---|
MTBContour2DSet |
MTBContour2DSet.clone() |
static MTBContour2DSet |
MTBContour2DSet.readContoursFromASCIIFiles(String dir,
String delim,
int skipLines)
Read a set of 2D contours from ASCII files in xSV format from the
given directory.
|
Modifier and Type | Field and Description |
---|---|
(package private) MTBContour2DSet |
MTBContour2DSetROI.contourSet
Set of 2D contours.
|
Modifier and Type | Method and Description |
---|---|
MTBContour2DSet |
MTBContour2DSetROI.getContourSet()
Get 2D contour set from Roi.
|
MTBContour2DSet |
RoiManagerAdapter.getContourSetFromRoiManager()
Reads a ROI manager selection into a set of contours.
|
Modifier and Type | Method and Description |
---|---|
void |
RoiManagerAdapter.addContoursToRoiManager(MTBContour2DSet conts)
Adds a set of 2D contours to the ROI manager.
|
Constructor and Description |
---|
MTBContour2DSetROI(MTBContour2DSet contSet,
String roiLabel)
Constructor to create a new Roi-Manager-Object, based on a MTBContour2DSet.
|
Modifier and Type | Method and Description |
---|---|
(package private) Vector<MorphologyAnalyzer2DInProData> |
MorphologyAnalyzer2DInProHelper.doProtrusionIndentationAnalysis(MTBContour2DSet contours,
Vector<double[]> curvatureValues,
int minProtrusionLength,
int minIndentationLength)
Method to perform analysis of intrusions/protrusions along contours.
|
Modifier and Type | Field and Description |
---|---|
private MTBContour2DSet |
Contour2DConcavityCalculator.contours |
private MTBContour2DSet |
Contour2DConcavityCalculator.contourWorkSet |
private MTBContour2DSet |
Contour2DCurvatureCalculator.inContours
Set of contours to compute curvatures for
|
Modifier and Type | Method and Description |
---|---|
void |
Contour2DConcavityCalculator.setContours(MTBContour2DSet cset)
Specify optional input contours.
|
Constructor and Description |
---|
Contour2DConcavityCalculator(MTBImage inImg,
MTBContour2DSet contours,
int radius,
boolean eightconnected) |
Contour2DCurvatureCalculator(MTBContour2DSet inContours) |
Modifier and Type | Field and Description |
---|---|
private MTBContour2DSet |
GetMTBContour2DSetFromXSVFiles.resultSet
Resulting contour set.
|
Modifier and Type | Field and Description |
---|---|
private MTBContour2DSet |
ContourOnLabeledComponents.resultContours
* The calculated contours, every contour can include several inner
contours.
|
Modifier and Type | Method and Description |
---|---|
protected MTBContour2DSet |
ContourOnLabeledComponents.addInnerContours()
Adding the possible inner contours to the outer contour of a region.
|
protected MTBContour2DSet |
ContourOnLabeledComponents.getOuterContours(MTBRegion2DSet theRegions,
MTBImageByte theImage)
Calculate the outer contours of the given regions in a image.
|
MTBContour2DSet |
ContourOnLabeledComponents.getResultContours()
Get reference to the calculated contours.
|
Modifier and Type | Field and Description |
---|---|
private MTBContour2DSet |
DrawContour2DSet.inputConts
Set of contours of type
MTBContour2D to draw. |
Constructor and Description |
---|
DrawContour2DSet(MTBContour2DSet cs)
Simple constructor with contour set.
|
DrawContour2DSet(MTBContour2DSet cs,
MTBImageRGB img)
Constructor with contour set and image.
|
Copyright © 2010–2020 Martin Luther University Halle-Wittenberg, Institute of Computer Science, Pattern Recognition and Bioinformatics. All rights reserved.