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Packages 
Package Description
io.scif
Provides the interfaces and default implementations for the components of SCIFIO, and the context for instantiating these components.
io.scif.app
Contains the scijava-common app implementation for SCIFIO.
io.scif.bf
Contains Bio-Formats format, wrapping Bio-Formats proprietary readers as a SCIFIO Format.
io.scif.bf.ome
Contains translators from BioFormatsFormat to OME-XML.
io.scif.bf.wrapper
Contains wrapping and utility classes needed for BF <-> SCIFIO conversion.
io.scif.cli  
io.scif.cli.commands  
io.scif.codec
Codecs for encoding and decoding streams of bytes.
io.scif.common
SCIFIO common library.
io.scif.config
This package provides configuration options for all SCIFIO components.
io.scif.enumeration
Contains enums used throughout SCIFIO, and related classes (e.g.
io.scif.filters
Provides wrapping classes for modifying the performance of one or more of a {link io.scif.Format}'s components.
io.scif.formats
Provides Format implementations for all file formats that are supported by default in SCIFIO.
io.scif.formats.dicom  
io.scif.formats.imaris  
io.scif.formats.qt  
io.scif.formats.tiff
This package contains utility classes for working with a variety of Tiff-based formats.
io.scif.gui
Provides classes for working with BufferedImage in SCIFIO.
io.scif.img
Provides SCIFIO-based classes for working with ImgPlus from the imglib2 library.
io.scif.img.axes  
io.scif.img.cell
Provides a Reader backed CellImg implementation and supporting classes.
io.scif.img.cell.cache
Provides a CacheService interface for dynamically caching and retrieving image pixel data to and from disk.
io.scif.img.cell.loaders
Provides implementations of SCIFIOArrayLoader for each basic ArrayDataAccess type.
io.scif.img.converters
Provides a PlaneConverterService for populating ImgPlus objects using Reader output.
io.scif.io
Provides the classes for reading and writing information between image sources.
io.scif.jj2000.j2k  
io.scif.jj2000.j2k.codestream  
io.scif.jj2000.j2k.codestream.reader  
io.scif.jj2000.j2k.codestream.writer  
io.scif.jj2000.j2k.decoder  
io.scif.jj2000.j2k.entropy  
io.scif.jj2000.j2k.entropy.decoder  
io.scif.jj2000.j2k.entropy.encoder  
io.scif.jj2000.j2k.fileformat  
io.scif.jj2000.j2k.fileformat.reader  
io.scif.jj2000.j2k.fileformat.writer  
io.scif.jj2000.j2k.image  
io.scif.jj2000.j2k.image.forwcomptransf  
io.scif.jj2000.j2k.image.input  
io.scif.jj2000.j2k.image.invcomptransf  
io.scif.jj2000.j2k.io  
io.scif.jj2000.j2k.quantization  
io.scif.jj2000.j2k.quantization.dequantizer  
io.scif.jj2000.j2k.quantization.quantizer  
io.scif.jj2000.j2k.roi  
io.scif.jj2000.j2k.roi.encoder  
io.scif.jj2000.j2k.util  
io.scif.jj2000.j2k.wavelet  
io.scif.jj2000.j2k.wavelet.analysis  
io.scif.jj2000.j2k.wavelet.synthesis  
io.scif.lifesci  
io.scif.media.imageio.plugins.bmp
Package containing the public classes used by the Sun BMP plug-in for the Image I/O Framework.
io.scif.media.imageio.plugins.jpeg2000
Package containing the public classes used by the Sun JPEG 2000 plug-in for the Image I/O Framework.
io.scif.media.imageio.plugins.pnm
Package containing the public classes used by the Sun PNM plug-in for the Image I/O Framework.
io.scif.media.imageio.plugins.tiff
Package containing the public classes used by the TIFF plug-in for the Image I/O Framework.
io.scif.media.imageio.stream
Provides ImageInputStream and ImageOutputStream classes for use with the Java Image I/O Framework.
io.scif.media.imageioimpl.common  
io.scif.media.imageioimpl.plugins.bmp  
io.scif.media.imageioimpl.plugins.clib  
io.scif.media.imageioimpl.plugins.gif  
io.scif.media.imageioimpl.plugins.jpeg  
io.scif.media.imageioimpl.plugins.jpeg2000  
io.scif.media.imageioimpl.plugins.pcx  
io.scif.media.imageioimpl.plugins.png  
io.scif.media.imageioimpl.plugins.pnm  
io.scif.media.imageioimpl.plugins.raw  
io.scif.media.imageioimpl.plugins.tiff  
io.scif.media.imageioimpl.plugins.wbmp  
io.scif.media.imageioimpl.stream  
io.scif.media.jai.imageioimpl  
io.scif.media.jai.operator
Provides JAI operations which read and write images using the Java Image I/O Framework.
io.scif.ome  
io.scif.ome.commands  
io.scif.ome.formats  
io.scif.ome.services  
io.scif.ome.translators  
io.scif.refs
Provides reference management utilities.
io.scif.services
Provides a set of Services (singletons within a given context) for working with SCIFIO objects.
io.scif.util
Provides utility classes for common operations on or by SCIFIO components.
io.scif.xml
Provides tools and utility classes for working with XML in SCIFIO.
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