DefaultOMEXMLService (SCIFIO Javadocs 0-SNAPSHOT API)

java.lang.Object
- org.scijava.AbstractContextual
- - org.scijava.plugin.AbstractRichPlugin
  - - org.scijava.service.AbstractService
    - - io.scif.ome.services.DefaultOMEXMLService

All Implemented Interfaces:

OMEXMLService, SCIFIOService, Comparable<Prioritized>, Contextual, Disposable, Identifiable, Initializable, Locatable, Logged, HasPluginInfo, RichPlugin, SciJavaPlugin, Prioritized, Service, Versioned
```
public class DefaultOMEXMLService
extends AbstractService
implements OMEXMLService
```
Default implementation of OMEXMLService.

Constructor Summary

Constructors
Constructor and Description

DefaultOMEXMLService()

Constructors
Constructor and Description
`DefaultOMEXMLService()`

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`addMetadataOnly(OMEXMLMetadata omexmlMeta, int image)`
`MetadataRetrieve`	`asRetrieve(MetadataStore meta)`
`MetadataStore`	`asStore(MetadataRetrieve meta)`
`void`	`convertMetadata(MetadataRetrieve src, MetadataStore dest)`
`void`	`convertMetadata(String xml, MetadataStore dest)`
`OMEXMLMetadata`	`createOMEXMLMetadata()`
`OMEXMLMetadata`	`createOMEXMLMetadata(String xml)`
`OMEXMLMetadata`	`createOMEXMLMetadata(String xml, String version)`
`Object`	`createOMEXMLRoot(String xml)`
`String`	`getLatestVersion()`
`OMEXMLMetadata`	`getOMEMetadata(MetadataRetrieve src)`
`String`	`getOMEXML(MetadataRetrieve src)`
`String`	`getOMEXMLVersion(Object o)`
`Hashtable<String,Object>`	`getOriginalMetadata(OMEXMLMetadata omexmlMeta)`
`boolean`	`isEqual(OMEXMLMetadata src1, OMEXMLMetadata src2)`
`boolean`	`isOMEXMLMetadata(Object o)`
`boolean`	`isOMEXMLRoot(Object o)`
`void`	`populateOriginalMetadata(OMEMetadata omeMeta, Hashtable<String,Object> metadata)`
`void`	`populateOriginalMetadata(OMEMetadata omeMeta, String key, String value)`
`void`	`removeBinData(OMEXMLMetadata omexmlMeta)`
`void`	`removeChannels(OMEXMLMetadata omexmlMeta, int image, int sizeC)`
`String`	`transformToLatestVersion(String xml)`
`boolean`	`validateOMEXML(String xml)`
`boolean`	`validateOMEXML(String xml, boolean pixelsHack)`

Methods inherited from class org.scijava.service.AbstractService
getContext, setContext, toString

Methods inherited from class org.scijava.plugin.AbstractRichPlugin
getInfo, getPriority, setInfo, setPriority

Methods inherited from class org.scijava.AbstractContextual
context

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.scijava.service.Service
initialize, registerEventHandlers

Methods inherited from interface org.scijava.plugin.RichPlugin
getIdentifier, log

Methods inherited from interface org.scijava.Contextual
context, getContext, setContext

Methods inherited from interface org.scijava.Prioritized
compareTo, getPriority, setPriority

Methods inherited from interface org.scijava.plugin.HasPluginInfo
getInfo, setInfo

Methods inherited from interface org.scijava.Locatable
getLocation

Methods inherited from interface org.scijava.Versioned
getVersion

Methods inherited from interface org.scijava.Disposable
dispose

- Constructor Detail
  - DefaultOMEXMLService
```
public DefaultOMEXMLService()
```
- Method Detail
  - getLatestVersion
```
public String getLatestVersion()
```
    Specified by:
    
    getLatestVersion in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.getLatestVersion()
  - transformToLatestVersion
```
public String transformToLatestVersion(String xml)
                                throws loci.common.services.ServiceException
```
    Specified by:
    
    transformToLatestVersion in interface OMEXMLService
    
    Throws:
    
    loci.common.services.ServiceException
    
    See Also:
    
    OMEXMLService.transformToLatestVersion(String)
  - createOMEXMLMetadata
```
public OMEXMLMetadata createOMEXMLMetadata()
                                    throws loci.common.services.ServiceException
```
    Specified by:
    
    createOMEXMLMetadata in interface OMEXMLService
    
    Throws:
    
    loci.common.services.ServiceException
    
    See Also:
    
    OMEXMLService.createOMEXMLMetadata()
  - createOMEXMLMetadata
```
public OMEXMLMetadata createOMEXMLMetadata(String xml)
                                    throws loci.common.services.ServiceException
```
    Specified by:
    
    createOMEXMLMetadata in interface OMEXMLService
    
    Throws:
    
    loci.common.services.ServiceException
    
    See Also:
    
    OMEXMLService.createOMEXMLMetadata()
  - createOMEXMLMetadata
```
public OMEXMLMetadata createOMEXMLMetadata(String xml,
                                           String version)
                                    throws loci.common.services.ServiceException
```
    Specified by:
    
    createOMEXMLMetadata in interface OMEXMLService
    
    Throws:
    
    loci.common.services.ServiceException
    
    See Also:
    
    OMEXMLService.createOMEXMLMetadata(String, String)
  - createOMEXMLRoot
```
public Object createOMEXMLRoot(String xml)
                        throws loci.common.services.ServiceException
```
    Specified by:
    
    createOMEXMLRoot in interface OMEXMLService
    
    Throws:
    
    loci.common.services.ServiceException
    
    See Also:
    
    OMEXMLService.createOMEXMLRoot(String)
  - isOMEXMLMetadata
```
public boolean isOMEXMLMetadata(Object o)
```
    Specified by:
    
    isOMEXMLMetadata in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.isOMEXMLMetadata(Object)
  - isOMEXMLRoot
```
public boolean isOMEXMLRoot(Object o)
```
    Specified by:
    
    isOMEXMLRoot in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.isOMEXMLRoot(Object)
  - getOMEXMLVersion
```
public String getOMEXMLVersion(Object o)
```
    Specified by:
    
    getOMEXMLVersion in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.getOMEXMLVersion(Object)
  - getOMEMetadata
```
public OMEXMLMetadata getOMEMetadata(MetadataRetrieve src)
                              throws loci.common.services.ServiceException
```
    Specified by:
    
    getOMEMetadata in interface OMEXMLService
    
    Throws:
    
    loci.common.services.ServiceException
    
    See Also:
    
    OMEXMLService.getOMEMetadata(MetadataRetrieve)
  - getOMEXML
```
public String getOMEXML(MetadataRetrieve src)
                 throws loci.common.services.ServiceException
```
    Specified by:
    
    getOMEXML in interface OMEXMLService
    
    Throws:
    
    loci.common.services.ServiceException
    
    See Also:
    
    OMEXMLService.getOMEXML(MetadataRetrieve)
  - validateOMEXML
```
public boolean validateOMEXML(String xml)
```
    Specified by:
    
    validateOMEXML in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.validateOMEXML(String)
  - validateOMEXML
```
public boolean validateOMEXML(String xml,
                              boolean pixelsHack)
```
    Specified by:
    
    validateOMEXML in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.validateOMEXML(String, boolean)
  - populateOriginalMetadata
```
public void populateOriginalMetadata(OMEMetadata omeMeta,
                                     Hashtable<String,Object> metadata)
```
    Specified by:
    
    populateOriginalMetadata in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.populateOriginalMetadata(OMEXMLMetadata, Hashtable)
  - populateOriginalMetadata
```
public void populateOriginalMetadata(OMEMetadata omeMeta,
                                     String key,
                                     String value)
```
    Specified by:
    
    populateOriginalMetadata in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.populateOriginalMetadata(OMEXMLMetadata, String, String)
  - getOriginalMetadata
```
public Hashtable<String,Object> getOriginalMetadata(OMEXMLMetadata omexmlMeta)
```
    Specified by:
    
    getOriginalMetadata in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.getOriginalMetadata(OMEXMLMetadata)
  - convertMetadata
```
public void convertMetadata(String xml,
                            MetadataStore dest)
                     throws loci.common.services.ServiceException
```
    Specified by:
    
    convertMetadata in interface OMEXMLService
    
    Throws:
    
    loci.common.services.ServiceException
    
    See Also:
    
    OMEXMLService.convertMetadata(String, MetadataStore)
  - convertMetadata
```
public void convertMetadata(MetadataRetrieve src,
                            MetadataStore dest)
```
    Specified by:
    
    convertMetadata in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.convertMetadata(MetadataRetrieve, MetadataStore)
  - removeBinData
```
public void removeBinData(OMEXMLMetadata omexmlMeta)
```
    Specified by:
    
    removeBinData in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.removeBinData(OMEXMLMetadata)
  - removeChannels
```
public void removeChannels(OMEXMLMetadata omexmlMeta,
                           int image,
                           int sizeC)
```
    Specified by:
    
    removeChannels in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.removeChannels(OMEXMLMetadata, int, int)
  - addMetadataOnly
```
public void addMetadataOnly(OMEXMLMetadata omexmlMeta,
                            int image)
```
    Specified by:
    
    addMetadataOnly in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.addMetadataOnly(OMEXMLMetadata, int)
  - isEqual
```
public boolean isEqual(OMEXMLMetadata src1,
                       OMEXMLMetadata src2)
```
    Specified by:
    
    isEqual in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.isEqual(OMEXMLMetadata, OMEXMLMetadata)
  - asStore
```
public MetadataStore asStore(MetadataRetrieve meta)
```
    Specified by:
    
    asStore in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.asStore(MetadataRetrieve)
  - asRetrieve
```
public MetadataRetrieve asRetrieve(MetadataStore meta)
```
    Specified by:
    
    asRetrieve in interface OMEXMLService
    
    See Also:
    
    OMEXMLService.asRetrieve(MetadataStore)

Class DefaultOMEXMLService

Constructor Summary

Method Summary

Methods inherited from class org.scijava.service.AbstractService

Methods inherited from class org.scijava.plugin.AbstractRichPlugin

Methods inherited from class org.scijava.AbstractContextual

Methods inherited from class java.lang.Object

Methods inherited from interface org.scijava.service.Service

Methods inherited from interface org.scijava.plugin.RichPlugin

Methods inherited from interface org.scijava.Contextual

Methods inherited from interface org.scijava.Prioritized

Methods inherited from interface org.scijava.plugin.HasPluginInfo

Methods inherited from interface org.scijava.Locatable

Methods inherited from interface org.scijava.Versioned

Methods inherited from interface org.scijava.Disposable

Constructor Detail

DefaultOMEXMLService

Method Detail

getLatestVersion

transformToLatestVersion

createOMEXMLMetadata

createOMEXMLMetadata

createOMEXMLMetadata

createOMEXMLRoot

isOMEXMLMetadata

isOMEXMLRoot

getOMEXMLVersion

getOMEMetadata

getOMEXML

validateOMEXML

validateOMEXML

populateOriginalMetadata

populateOriginalMetadata

getOriginalMetadata

convertMetadata

convertMetadata

removeBinData

removeChannels

addMetadataOnly

isEqual

asStore

asRetrieve