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A

aboutIcon - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
Icon to be shown in about box.
AbstrOpClassPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
Default constructor.
accept(File) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
 
accept(File) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
 
accept(File) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionShowButton
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayShowButton
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayShowButton
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassShowButton
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuGraph
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDBatchOperatorResultFrame
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorParamDisplayFrame
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
 
actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.OnlineHelpMissingHelpListener
 
actionPosition_x - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
X-coordinate of the working area where action happened.
actionPosition_y - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
Y-coordinate of the working area where action happened.
actionsOnWorkflow - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
List of actions performed on the Alida workflow object.
activateBatchMode - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Checkbox for enabling/disabling batch mode.
add(Class, AbstractList<Class>, String) - Static method in class de.unihalle.informatik.Alida.helpers.SubclassFinder
 
addALDConfigurationEventListener(ALDConfigurationEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
 
addALDConfigurationEventListener(ALDConfigurationEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventReporter
Adds a listener to this reporter.
addALDControlEventListener(ALDControlEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
 
addALDControlEventListener(ALDControlEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventReporter
Adds a listener to this reporter.
addALDOpParameterUpdateEventListener(ALDOpParameterUpdateEventListener) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Adds a listener to this reporter.
addALDOpParameterUpdateEventListener(ALDOpParameterUpdateEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEventReporter
Adds a listener to this reporter.
addALDWorkflowClassEventListener(ALDWorkflowClassEventListener) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Add a listener for events thrown by the class ALDWorkflow (not an instance).
addALDWorkflowEventListener(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
addALDWorkflowEventListener(ALDWorkflowEventListener) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventReporter
Adds a listener to this reporter.
addAttrToEdge(EdgeType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add an attribute to a graphml edge
addAttrToGraph(GraphType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add an attribute to a graphml graph
addAttrToGraphml(GraphmlType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add an attribute to a graphml element
addAttrToNode(NodeType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add an attribute to a graphml node
addAttrToPort(PortType, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add an attribute to a graphml port
addBatchInputParameter(ALDParameterDescriptor, ButtonGroup, JComponent[][], int) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Add batch input mode parameter.
addButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Button to add an element.
addChild(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Add a child found during back tracing.
addCloseButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Adds set of control buttons to the input panel.
addCol - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Button for adding a column.
addContextSpecificButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Adds set of control buttons to the input panel.
addContextSpecificButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Adds set of control buttons to the input panel.
addData(ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Add a data port found during back tracing.
addDataPortToGraphml(GraphType, ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add a data port to the graphML graph
addDirectChild(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Add a directly registered child during invocation.
addEdge(GraphType, ALDPort, ALDPort, int) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add an graphml edge to graph with index idx
addEdge(ALDWorkflowEdge) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
addGraphmlHistory(GraphType, ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add the complete history of an object represented by a data port, which was read from a graphml file, to a graph object.
additionalOperators(ALDAOperator.Level) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
This method may be overridden in extending classes to add operators to the list of available operators.
addKey(GraphmlType, String, KeyForType.Enum, String, KeyTypeType.Enum) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
add a key definition to graphml
addNewWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Adds a new workflow (tab) to the workbench.
addNode(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Add this node to the workflow, create a NodeId and update mapping.
addNodeToWorkflow(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
addOperatorExecutionProgressEventListener(ALDOperatorExecutionProgressEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Adds a listener to this reporter.
addOpNodePortToGraphml(GraphType, ALDOpNodePort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add a opNode port object to the graphML graph
addOpNodeToGraph(GraphType, ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add an opNode to the graph of the enclosing opNode.
addParameter(String, Object, Field, String, StringBuffer) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
Format the parameter name of the object obj into the buffer bufstr using formatString to determine formating.
addParameter(ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Add a parameter with the given descriptor to the operator.
addParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Add a parameter with the given name to the operator.
addParameter(String, Object, Field, String, ALDXMLParametrizedType) - Method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans
Format the parameter name of the object obj into the buffer bufstr using formatString to determine formating.
addParameterHash(NodeType, ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add the parameter hash to to a graphml node.
addParameterUnconditioned(ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Add a parameter descriptor to the operator without checks or updating of parameter hashes besides active parameters.
addPoint(Double, Double) - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
Add an extremal point (x,y)
addPortsToNode(ALDOperator, mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Adds the ports of the operator's parameters to the given node.
addRow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Button for adding a row.
addRow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Button for adding a row.
addValueChangeEventListener(ALDSwingValueChangeListener) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
Adds a listener to this reporter.
addXmlHistory(NodeType, XmlObject) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Add the complete history of a ALDData from a generic XML file to a graphml node.
ALD_EXTENSION - Static variable in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
File extension of Alida processing history files.
ALDAOperator - Annotation Type in de.unihalle.informatik.Alida.annotations
ALDOperators may be annotated with this annotation in order to enable generic execution or documentation facilities for the operator.
ALDAOperator.ExecutionMode - Enum in de.unihalle.informatik.Alida.annotations
Enumerates the different types of user interfaces to be automatically generated for this operator.
ALDAOperator.Level - Enum in de.unihalle.informatik.Alida.annotations
Enumerates the different levels of this operator.
ALDArrayMean - Class in de.unihalle.informatik.Alida.demo
Operator returning the mean value of an 1D array.
ALDArrayMean() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMean
Default constructor.
ALDArrayMean(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMean
Constructor.
ALDArrayMin - Class in de.unihalle.informatik.Alida.demo
Operator returning the minimum value of an 1D array.
ALDArrayMin() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMin
Default constructor.
ALDArrayMin(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMin
Constructor.
ALDArraySum - Class in de.unihalle.informatik.Alida.demo
Operator returning the sum of an 1D array.
ALDArraySum() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArraySum
Default constructor.
ALDArraySum(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArraySum
Constructor.
ALDBatchInputIterator - Interface in de.unihalle.informatik.Alida.batch.provider.input
Super class for all input providers in Alida batch mode.
ALDBatchInputIteratorSwing - Interface in de.unihalle.informatik.Alida.batch.provider.input.swing
Interface for Alida's automatic batch data I/O via GUIs based on Swing.
ALDBatchInputManager - Class in de.unihalle.informatik.Alida.batch
Class to manage data inputs in batch processing with operators.
ALDBatchInputManager() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
Default constructor.
ALDBatchInputManagerSwing - Class in de.unihalle.informatik.Alida.batch
This class implements a batch provider mangager for batch processing in the context of graphical user interfaces.
ALDBatchInputManagerSwing() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
Private constructor which inits the provider map.
ALDBatchInputManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.batch
Levels to enable/disable interactive provider behaviour.
ALDBatchInputNativeArray1DSwing - Class in de.unihalle.informatik.Alida.batch.provider.input.swing
Implementation of ALDBatchInputIteratorSwing for native 1D arrays.
ALDBatchInputNativeArray1DSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
 
ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D - Class in de.unihalle.informatik.Alida.batch.provider.input.swing
Iterates row-wise over a 2D array.
ALDBatchInputNumberSwing - Class in de.unihalle.informatik.Alida.batch.provider.input.swing
Implementation of ALDBatchInputIteratorSwing for numbers and strings.
ALDBatchInputNumberSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
 
ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D - Class in de.unihalle.informatik.Alida.batch.provider.input.swing
Iterates row-wise over a 2D array.
ALDBatchInputProvider - Annotation Type in de.unihalle.informatik.Alida.annotations
Annotation for classes acting as Alida batch input providers and implementing the ALDBatchInputIterator interface.
ALDBatchIOException - Exception in de.unihalle.informatik.Alida.exceptions
Exception thrown in batch mode data IO contexts.
ALDBatchIOException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOException
 
ALDBatchIOManagerException - Exception in de.unihalle.informatik.Alida.exceptions
Alida exception thrown by batch I/O managers.
ALDBatchIOManagerException(ALDBatchIOManagerException.ALDBatchIOManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException
Constructor.
ALDBatchIOManagerException.ALDBatchIOManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
Possible exception types.
ALDBatchIOManagerExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException.ALDBatchIOManagerExceptionType
 
ALDBatchIOProviderException - Exception in de.unihalle.informatik.Alida.exceptions
Alida exception thrown by batch data IO providers.
ALDBatchIOProviderException(ALDBatchIOProviderException.ALDBatchIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException
Constructor.
ALDBatchIOProviderException.ALDBatchIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
Possible exception types.
ALDBatchIOProviderExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException.ALDBatchIOProviderExceptionType
 
ALDBatchIteratorNativeArray1D(Object, Class<?>) - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
Default constructor.
ALDBatchIteratorNativeArray1D(Object, Class<?>) - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
Default constructor.
ALDBatchOperatorResultFrame - Class in de.unihalle.informatik.Alida.gui
Frame to display results of a batch run of an operator.
ALDBatchOperatorResultFrame(ALDOperator, HashMap<String, ALDBatchRunResultInfo>, ALDBatchOutputManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDBatchOperatorResultFrame
Constructor.
ALDBatchOutputManager - Class in de.unihalle.informatik.Alida.batch
Class to manage data outputs in batch processing with operators.
ALDBatchOutputManager() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
Default constructor.
ALDBatchOutputManagerSwing - Class in de.unihalle.informatik.Alida.batch
This class implements a DataIO manager for summarizing batch results in the context of graphical user interfaces.
ALDBatchOutputManagerSwing() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
Private constructor.
ALDBatchOutputManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.batch
Levels to enable/disable interactive provider behaviour.
ALDBatchOutputProvider - Annotation Type in de.unihalle.informatik.Alida.annotations
Annotation for classes acting as Alida batch output providers and implementing the ALDBatchOutputSummarizer interface.
ALDBatchOutputSummarizer - Interface in de.unihalle.informatik.Alida.batch.provider.output
Super class for all output summarizers in Alida batch mode.
ALDBatchOutputSummarizerSwing - Interface in de.unihalle.informatik.Alida.batch.provider.output.swing
Interface for Alida's automatic batch result data I/O via GUI based on Swing.
ALDBatchRunResultInfo - Class in de.unihalle.informatik.Alida.batch
Info object summarizing all result data of a batch run.
ALDBatchRunResultInfo() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
Default constructor, should/can never be called from external.
ALDBatchRunResultInfo(String) - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
Constructor.
ALDCalcMeanArray - Class in de.unihalle.informatik.Alida.demo
Operator for calculating the mean of given double values.
ALDCalcMeanArray() - Constructor for class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
Default constructor.
ALDCalcMeanArray(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
Constructor.
ALDChooseOpNameFrame - Class in de.unihalle.informatik.Alida.gui
Main window for selecting Alida annotated operators for running.
ALDChooseOpNameFrame() - Constructor for class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Constructor.
ALDChooseOpNameFrame.MyMouseAdapter - Class in de.unihalle.informatik.Alida.gui
Local MouseAdapter class.
ALDClassDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
DataIO provider for enumerations xml using xmlbeans.
ALDClassDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDClassDataIOXmlbeans
 
ALDClassInfo - Class in de.unihalle.informatik.Alida.helpers
 
ALDClassInfo() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDClassInfo
 
ALDClassParameter - Annotation Type in de.unihalle.informatik.Alida.annotations
Member variables of classes annotated with ALDParametrizedClass may be annotated with this annotation to be automatically handled by Alida's data I/O.
ALDCollectionDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
DataIO provider for collections from command line.
ALDCollectionDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
 
ALDCollectionDataIOHelper - Class in de.unihalle.informatik.Alida.dataio.provider.helpers
Class supplying support for generic loading/saving of Collections in Alida.
ALDCollectionDataIOHelper() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDCollectionDataIOHelper
 
ALDCollectionDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Class for generic loading/saving of collections from/to GUI in Alida.
ALDCollectionDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
 
ALDCollectionDataIOSwing.CollectionConfigButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element for configuring collections.
ALDCollectionDataIOSwing.CollectionConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Collection configuration window.
ALDCollectionDataIOSwing.CollectionShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element for displaying collections.
ALDCollectionDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
DataIO provider for collections xml using xmlbeans.
ALDCollectionDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
 
ALDConcReadWeakHashMap - Class in de.unihalle.informatik.Alida.helpers
A version of Hashtable that supports concurrent reading/exclusive writing.
ALDConcReadWeakHashMap(int, float) - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Constructs a new, empty map with the specified initial capacity and the specified load factor.
ALDConcReadWeakHashMap(int) - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Constructs a new, empty map with the specified initial capacity and default load factor.
ALDConcReadWeakHashMap() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Constructs a new, empty map with a default initial capacity and load factor.
ALDConcReadWeakHashMap.BarrierLock - Class in de.unihalle.informatik.Alida.helpers
A Serializable class for barrier lock.
ALDConfigurationEvent - Class in de.unihalle.informatik.Alida.operator.events
Event type to configure operator execution.
ALDConfigurationEvent(Object) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
Constructor.
ALDConfigurationEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
Constructor with message.
ALDConfigurationEventListener - Interface in de.unihalle.informatik.Alida.operator.events
Listener interface for `Alida` configuration events.
ALDConfigurationEventReporter - Interface in de.unihalle.informatik.Alida.operator.events
Interface for classes that generate events of type `ALDConfigurationEvent`.
ALDConfigurationValidator - Interface in de.unihalle.informatik.Alida.datatypes
A class implementing this interface provides methods to determine proper configuration of an object.
ALDControlEvent - Class in de.unihalle.informatik.Alida.operator.events
Event type for controlling operator threads.
ALDControlEvent(Object, ALDControlEvent.ALDControlEventType) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDControlEvent
Default constructor.
ALDControlEvent(Object, ALDControlEvent.ALDControlEventType, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDControlEvent
Default constructor with arguments.
ALDControlEvent.ALDControlEventType - Enum in de.unihalle.informatik.Alida.operator.events
Event types on which a controllable operator should react.
ALDControlEventListener - Interface in de.unihalle.informatik.Alida.operator.events
Listener interface for `Alida` control events.
ALDControlEventReporter - Interface in de.unihalle.informatik.Alida.operator.events
Interface for classes that generate events of type `ALDControlEvent`.
ALDControlEventType() - Constructor for enum de.unihalle.informatik.Alida.operator.events.ALDControlEvent.ALDControlEventType
 
ALDConverterManagerException() - Constructor for class de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDConverterManagerException
 
ALDData - Class in de.unihalle.informatik.Alida.operator
This is the abstract class from which all data classes have to be derived which want properties to be recored when returned from an operator as result.
ALDData() - Constructor for class de.unihalle.informatik.Alida.operator.ALDData
Create a data object.
ALDDataConverter - Interface in de.unihalle.informatik.Alida.dataconverter
Super class for all data converter providers in Alida.
ALDDataConverterException - Exception in de.unihalle.informatik.Alida.exceptions
Alida exception thrown by data type converters.
ALDDataConverterException(ALDDataConverterException.ALDDataIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException
Constructor.
ALDDataConverterException.ALDDataIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
Possible exception types.
ALDDataConverterManager - Class in de.unihalle.informatik.Alida.dataconverter
This class implements a provider manager for data conversion.
ALDDataConverterManager() - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
Private constructor which initializes the provider map.
ALDDataConverterManager.ALDSourceTargetClassPair - Class in de.unihalle.informatik.Alida.dataconverter
A pair of source and target pair (of a converter)
ALDDataConverterManagerException - Exception in de.unihalle.informatik.Alida.exceptions
 
ALDDataConverterManagerException(ALDProviderManagerException.ALDProviderManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterManagerException
 
ALDDataConverterProvider - Annotation Type in de.unihalle.informatik.Alida.annotations
Annotation for classes acting as Alida data conversion provider and implementing the ALDDataConverter interface.
ALDDataIO - Interface in de.unihalle.informatik.Alida.dataio.provider
This is the interface for Alida's dataIO provider.
ALDDataIOCmdline - Interface in de.unihalle.informatik.Alida.dataio.provider
This is the interface for Alida's dataIO provider from command line.
ALDDataIOException - Exception in de.unihalle.informatik.Alida.exceptions
Exception thrown in data IO contexts.
ALDDataIOException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOException
 
ALDDataIOManager - Class in de.unihalle.informatik.Alida.dataio
Class to manage data input and output in Alida.
ALDDataIOManager() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
Default constructor.
ALDDataIOManagerCmdline - Class in de.unihalle.informatik.Alida.dataio
This class implements a DataIO manager for reading/writing from command line.
ALDDataIOManagerCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
private constructor
ALDDataIOManagerException - Exception in de.unihalle.informatik.Alida.exceptions
Alida exception thrown by data IO managers.
ALDDataIOManagerException(ALDDataIOManagerException.ALDDataIOManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException
Constructor.
ALDDataIOManagerException.ALDDataIOManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
Possible exception types.
ALDDataIOManagerExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException.ALDDataIOManagerExceptionType
 
ALDDataIOManagerSwing - Class in de.unihalle.informatik.Alida.dataio
This class implements a DataIO mangager for reading/writing from a graphical user interface written in Swing.
ALDDataIOManagerSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
private constructor
ALDDataIOManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.dataio
Levels to enable/disable interactive provider behaviour.
ALDDataIOManagerXmlbeans - Class in de.unihalle.informatik.Alida.dataio
This class implements a DataIO manager for reading/writing from xml using xmlbeans.
ALDDataIOManagerXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
private constructor
ALDDataIOProvider - Annotation Type in de.unihalle.informatik.Alida.annotations
Annotation for classes acting as Alida data I/O provider and implementing the ALDDataIO interface.
ALDDataIOProviderException - Exception in de.unihalle.informatik.Alida.exceptions
Alida exception thrown by data IO providers.
ALDDataIOProviderException(ALDDataIOProviderException.ALDDataIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException
Constructor.
ALDDataIOProviderException.ALDDataIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
Possible exception types.
ALDDataIOProviderExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDDataConverterException.ALDDataIOProviderExceptionType
 
ALDDataIOProviderExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException.ALDDataIOProviderExceptionType
 
ALDDataIOSwing - Interface in de.unihalle.informatik.Alida.dataio.provider
Interface for Alida's automatic data I/O via GUIs based on Swing.
ALDDataIOSwingInitialGUIValueDefaultHandler - Class in de.unihalle.informatik.Alida.dataio.provider
Class providing default method for initial GUI value handling.
ALDDataIOSwingInitialGUIValueDefaultHandler() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwingInitialGUIValueDefaultHandler
 
ALDDataIOXmlbeans - Interface in de.unihalle.informatik.Alida.dataio.provider
This is the interface for Alida's dataIO provider from xml using xmlbeans.
ALDDataPort - Class in de.unihalle.informatik.Alida.operator
A data port acts as the reference for a data object in the processing history.
ALDDataPort(Object) - Constructor for class de.unihalle.informatik.Alida.operator.ALDDataPort
Create a data port for an object.
ALDDemoOpControllable - Class in de.unihalle.informatik.Alida.demo
Controllable demo operator for testing interaction.
ALDDemoOpControllable() - Constructor for class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable
Default constructor.
ALDDerivedClass - Annotation Type in de.unihalle.informatik.Alida.annotations
Each Class annotated with this annotation will enable Alida's DataIO mechanism to find the class as extending another class.
ALDDirectoryString - Class in de.unihalle.informatik.Alida.datatypes
Class for representing a directory path.
ALDDirectoryString(String) - Constructor for class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString
Default constructor.
ALDDynamicOp - Class in de.unihalle.informatik.Alida.demo
Operator to test dynamic parameters and callback function.
ALDDynamicOp() - Constructor for class de.unihalle.informatik.Alida.demo.ALDDynamicOp
Default constructor.
ALDEdge - Class in de.unihalle.informatik.Alida.operator
This class is used to represent edges of the processing history during construction of the explicit history graph.
ALDEdge(ALDPort, ALDPort) - Constructor for class de.unihalle.informatik.Alida.operator.ALDEdge
Construct an edge for given source and target ports.
ALDEnumDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
DataIO provider for enumerations from command line.
ALDEnumDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
 
ALDEnumDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Class for generic loading/saving of enumerations via GUI in Alida.
ALDEnumDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
 
ALDEnumDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
DataIO provider for enumerations xml using xmlbeans.
ALDEnumDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
 
ALDEnvironmentConfig - Class in de.unihalle.informatik.Alida.helpers
Helper class to access environment variables and properties.
ALDEnvironmentConfig() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
 
ALDEvent - Class in de.unihalle.informatik.Alida.operator.events
Super class for all events used in `Alida`.
ALDEvent(Object) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDEvent
Default constructor for events.
ALDEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDEvent
Default constructor for events with messages.
ALDException - Exception in de.unihalle.informatik.Alida.exceptions
Abstract main class for exceptions in Alida.
ALDException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDException
 
ALDFileDirectoryDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
DataIO provider for filenames and directory paths from command line.
ALDFileDirectoryDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
 
ALDFileDirectoryDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Class for loading/saving file and directory paths via GUI.
ALDFileDirectoryDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
 
ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI panel for IO of file and directory names.
ALDFileDirectoryDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
DataIO provider for filenames and directory paths xml using xmlbeans.
ALDFileDirectoryDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
 
ALDFilePathManipulator - Class in de.unihalle.informatik.Alida.helpers
Class providing helpers to manipulate file and directory path names.
ALDFilePathManipulator() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
 
ALDFileString - Class in de.unihalle.informatik.Alida.datatypes
Class for representing a file path.
ALDFileString(String) - Constructor for class de.unihalle.informatik.Alida.datatypes.ALDFileString
Default constructor with file name.
ALDGrappaFrame - Class in de.unihalle.informatik.Alida.grappa
Main frame of Grappa graphical editor for Alida.
ALDGrappaFrame(Collection<ALDOperatorLocation>, Collection<ALDOperatorLocation>) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Default constructor
ALDGrappaFrame.ChooserTreeMouseAdapter - Class in de.unihalle.informatik.Alida.grappa
MouseListener for the operator tree.
ALDGrappaLinkDataIOSwing - Class in de.unihalle.informatik.Alida.grappa
Graphical component to represent Grappa links in Alida config windows.
ALDGrappaLinkDataIOSwing(String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
 
ALDGrappaLinkDataIOSwing.GrappaLinkTextField - Class in de.unihalle.informatik.Alida.grappa
 
ALDGrappaMenuBar - Class in de.unihalle.informatik.Alida.grappa
Menu bar for Grappa window.
ALDGrappaMenuBar(ALDGrappaFrame, ALDOperatorChooserTree, ALDGrappaWorkbench) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
Default constructor
ALDGrappaNodeInfo - Class in de.unihalle.informatik.Alida.grappa
Serializable object attached to nodes in Grappa to store meta information.
ALDGrappaNodeInfo() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
Default constructor.
ALDGrappaNodeInfo(String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
Constructor with predefined name.
ALDGrappaNodeInfo(String, Integer) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
Operator with predefined name and ID.
ALDGrappaNodePortInfo - Class in de.unihalle.informatik.Alida.grappa
Serializable object attached to node ports to store meta information.
ALDGrappaNodePortInfo(mxCell, ALDOpParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Default constructor.
ALDGrappaNodePortInfo() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
 
ALDGrappaRunner - Class in de.unihalle.informatik.Alida.tools
Main class for invoking Grappa from commandline in Alida context.
ALDGrappaRunner() - Constructor for class de.unihalle.informatik.Alida.tools.ALDGrappaRunner
 
ALDGrappaWorkbench - Class in de.unihalle.informatik.Alida.grappa
Main frame of Grappa.
ALDGrappaWorkbench(ALDGrappaFrame) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Default constructor
ALDGrappaWorkbenchGraph - Class in de.unihalle.informatik.Alida.grappa
Graph class augmented for Grappa workflows.
ALDGrappaWorkbenchGraph() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph
 
ALDGrappaWorkbenchTab - Class in de.unihalle.informatik.Alida.grappa
Grappa workflow graph component.
ALDGrappaWorkbenchTab(ALDGrappaWorkbench, ALDGrappaWorkbenchGraph) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Default constructor.
ALDGrappaWorkbenchTab(ALDGrappaWorkbench, mxGraph, ALDWorkflow) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Constructor to setup tab from given (reloaded) workflow.
ALDGrappaWorkbenchTab.ContextMenuGraph - Class in de.unihalle.informatik.Alida.grappa
Context menu for whole workbench.
ALDGrappaWorkbenchTab.ContextMenuNodeEdge - Class in de.unihalle.informatik.Alida.grappa
Context menu for nodes and edges within a workflow.
ALDGrappaWorkbenchTab.GraphEventListener - Class in de.unihalle.informatik.Alida.grappa
Event handler for mxGraph events.
ALDGrappaWorkbenchTab.GraphKeyListener - Class in de.unihalle.informatik.Alida.grappa
 
ALDGrappaWorkbenchTab.GraphMouseAdapter - Class in de.unihalle.informatik.Alida.grappa
MouseListener for the workbench.
ALDGrappaWorkbenchTab.ParameterUpdateListener - Class in de.unihalle.informatik.Alida.grappa
Class to handle parameter update events triggered configuration windows.
ALDGrappaWorkbenchTab.WorkflowModifyAction - Class in de.unihalle.informatik.Alida.grappa
 
ALDGrappaWorkflowTabChangeEvent - Class in de.unihalle.informatik.Alida.grappa
Event data type to handle events happening in Grappa workflow tabs.
ALDGrappaWorkflowTabChangeEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkflowTabChangeEvent
Default constructor for events with messages.
ALDIcon - Class in de.unihalle.informatik.Alida.helpers
Singleton class to provide access to Alida icon in graphical environments.
ALDIcon() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDIcon
Default constructor.
ALDInputPort - Class in de.unihalle.informatik.Alida.operator
Input port within an opNode.
ALDInputPort(ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDInputPort
Construct an input port within the given opNode with index idx and descriptorName as role of the port.
ALDInstantiationHelper - Class in de.unihalle.informatik.Alida.dataio.provider.helpers
 
ALDInstantiationHelper() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDInstantiationHelper
 
ALDNativeArray1DDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Class for generic loading/saving of 1D-arrays from/to GUI in Alida.
ALDNativeArray1DDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
Default constructor.
ALDNativeArray1DDataIOSwing.ArrayConfigPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element for configuring 1D arrays of native data types and wrapper.
ALDNativeArray1DDataIOSwing.ArrayConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Graphical user interface window for displaying tables.
ALDNativeArray1DDataIOSwing.ArrayConfigWindow.DataTabFileFilter - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Internal class that implements a FileFilter for text files where MiToBo table data is stored.
ALDNativeArray1DDataIOSwing.ArrayConfigWindow.TableFocusListener - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Focus listener to commit edits if table looses the focus.
ALDNativeArray1DDataIOSwing.ArrayShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element for displaying 2D arrays.
ALDNativeArray2DDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Class for generic loading/saving of 2D-arrays from/to GUI in Alida.
ALDNativeArray2DDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
Default constructor.
ALDNativeArray2DDataIOSwing.ArrayConfigPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element for configuring collections.
ALDNativeArray2DDataIOSwing.ArrayConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Graphical user interface window for displaying objects of class DefaultTableModel.
ALDNativeArray2DDataIOSwing.ArrayConfigWindow.DataTabFileFilter - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Internal class that realizes a FileFilter for text files where MiToBo table data is stored.
ALDNativeArray2DDataIOSwing.ArrayConfigWindow.TableFocusListener - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Focus listener to commit edits if table looses the focus.
ALDNativeArray2DDataIOSwing.ArrayShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element for displaying 2D arrays.
ALDNativeDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
DataIO provider for primitive datatypes, Java wrapper types, and arrays (1D and 2D) from comamand line.
ALDNativeDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
 
ALDNativeDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Class for loading/saving primitive datatypes in Alida.
ALDNativeDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
 
ALDNativeDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
DataIO provider for primitive datatypes, Java wrapper types, and arrays (1D and 2D) xml using xmlbeans.
ALDNativeDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
 
ALDNumberConverter - Class in de.unihalle.informatik.Alida.dataconverter
Converts numbers.
ALDNumberConverter() - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
Default constructor.
ALDOperator - Class in de.unihalle.informatik.Alida.operator
This is the abstract super class for all Alida operators.
ALDOperator() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperator
This constructor initializes an operator.
ALDOperator.ConstructioMode - Enum in de.unihalle.informatik.Alida.operator
Mode of implicit construction of the processing graph.
ALDOperator.DescriptorComparator - Class in de.unihalle.informatik.Alida.operator
 
ALDOperator.HidingMode - Enum in de.unihalle.informatik.Alida.operator
Determines the visibility of an operator invocation via runOp() in the processing history.
ALDOperatorChooserTree - Class in de.unihalle.informatik.Alida.gui
This class extends JTree to hold ALDOperators to choose from.
ALDOperatorChooserTree(Collection<ALDOperatorLocation>, Collection<ALDOperatorLocation>) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Constructor.
ALDOperatorChooserTree.AuxNode - Class in de.unihalle.informatik.Alida.gui
Node to build up a tree of the package structure of ALDOperators.
ALDOperatorChooserTreeNode - Class in de.unihalle.informatik.Alida.gui
Class for managing nodes of the tree view.
ALDOperatorChooserTreeNode(String, ALDOperatorLocation) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode
constructor
ALDOperatorConfigurationFrame - Class in de.unihalle.informatik.Alida.gui
Frame to configure an operator.
ALDOperatorConfigurationFrame(ALDOperator, ALDOpParameterUpdateEventListener) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Constructs a control frame for an operator object.
ALDOperatorControlFrame - Class in de.unihalle.informatik.Alida.gui
Frame to configure and run an operator.
ALDOperatorControlFrame(ALDOperator, ALDOperatorGUIExecutionProxy, ALDOpParameterUpdateEventListener) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Constructs a new control frame for an operator object.
ALDOperatorControllable - Class in de.unihalle.informatik.Alida.operator
Operator class with inherent event handling for execution control.
ALDOperatorControllable() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
Default constructor.
ALDOperatorControllable.OperatorControlStatus - Enum in de.unihalle.informatik.Alida.operator
Commands for controlling the operator.
ALDOperatorControllable.OperatorExecutionStatus - Enum in de.unihalle.informatik.Alida.operator
Actual operator status.
ALDOperatorDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Data IO provider for operators in GUI.
ALDOperatorDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
Default constructor.
ALDOperatorDataIOSwing.OperatorConfigPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element for configuring a single operator.
ALDOperatorDataIOSwing.OperatorConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Configuration window for operator.
ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Element for handling operator inheritance hierarchies in configuration.
ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element class for parametrized class parameters.
ALDOperatorDataIOSwing.OperatorShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element for displaying configuration of a single operator.
ALDOperatorException - Exception in de.unihalle.informatik.Alida.exceptions
Exception mainly thrown by ALDOperator in case of failures.
ALDOperatorException(ALDOperatorException.OperatorExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException
Constructor.
ALDOperatorException.OperatorExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
Possible operator exception types.
ALDOperatorExecutionProgressEvent - Class in de.unihalle.informatik.Alida.operator.events
Event type to reflect progress of operator execution.
ALDOperatorExecutionProgressEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
Constructor with message.
ALDOperatorExecutionProgressEvent(Object, String, ALDOperator) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
Constructor with message.
ALDOperatorExecutionProgressEventListener - Interface in de.unihalle.informatik.Alida.operator.events
Listener interface for `Alida` progress of operator execution events.
ALDOperatorGUIExecutionProxy - Class in de.unihalle.informatik.Alida.gui
Manager for executing single operator and workflow objects via GUI.
ALDOperatorGUIExecutionProxy(ALDOperatorLocation) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Default constructor.
ALDOperatorGUIExecutionProxy.ParameterUpdateListener - Class in de.unihalle.informatik.Alida.gui
Listener class to react on parameter value updates in config window.
ALDOperatorGUIExecutionProxy.WorkflowThreadStatus - Enum in de.unihalle.informatik.Alida.gui
Status of the associated thread to execute operator.
ALDOperatorLocation - Class in de.unihalle.informatik.Alida.operator
 
ALDOperatorLocation() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
Default constructor, should never be called directly!
ALDOperatorLocation.LocationType - Enum in de.unihalle.informatik.Alida.operator
 
ALDOperatorLocationType - Interface in de.unihalle.informatik.Alida.operator
Describes different types of location from which an ALDOperator may be instantiated.
ALDOperatorParamDisplayFrame - Class in de.unihalle.informatik.Alida.gui
Frame to display the operator configuration used to calculate results.
ALDOperatorParamDisplayFrame(ALDOperator, ALDDataIOManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorParamDisplayFrame
Constructor.
ALDOperatorParameterPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Panel to hold graphical elements for configuring an operator.
ALDOperatorParameterPanel(ALDOperator, Parameter.ExpertMode, boolean, ALDSwingValueChangeListener) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Default constructor.
ALDOperatorParameterPanel.ParameterType - Enum in de.unihalle.informatik.Alida.dataio.provider.swing.components
Types of parameters appearing in Alida's operator concept.
ALDOperatorResultFrame - Class in de.unihalle.informatik.Alida.gui
Frame with result data displayed on termination of an operator run.
ALDOperatorResultFrame(ALDOperator, ALDDataIOManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
Constructor.
ALDOpNode - Class in de.unihalle.informatik.Alida.operator
Each instance of this class represents an operator invocation for the implicit processing graph.
ALDOpNode(ALDOperator, ALDOperator.HidingMode) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpNode
Construct an ALDOpNode for the operator op and hidingMode
ALDOpNodePort - Class in de.unihalle.informatik.Alida.operator
Abstract class for ports residing within opNodes.
ALDOpNodePort(String, ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpNodePort
Create a port for an opNode with given index within this opNode and type.
ALDOpParameterDescriptor - Class in de.unihalle.informatik.Alida.operator
This class describes the parameters of an operator.
ALDOpParameterDescriptor() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
 
ALDOpParameterDescriptor(String, Parameter.Direction, Boolean, Class<?>, String, String, boolean, Field, int, Parameter.ExpertMode, Boolean, String, Parameter.ParameterModificationMode, boolean) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
Construct a descriptor
ALDOpParameterUpdateEvent - Class in de.unihalle.informatik.Alida.operator.events
Event type for updates of operator parameters.
ALDOpParameterUpdateEvent(Object, ALDOpParameterUpdateEvent.EventType) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent
Constructor with message and type.
ALDOpParameterUpdateEvent(Object, String, ALDOpParameterUpdateEvent.EventType) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent
Constructor with message and type.
ALDOpParameterUpdateEvent.EventType - Enum in de.unihalle.informatik.Alida.operator.events
Possible types of events.
ALDOpParameterUpdateEventListener - Interface in de.unihalle.informatik.Alida.operator.events
Listener interface for `Alida` parameter update events.
ALDOpParameterUpdateEventReporter - Interface in de.unihalle.informatik.Alida.operator.events
Interface for classes generating events of type ALDOpParameterUpdateEvent.
ALDOpRunner - Class in de.unihalle.informatik.Alida.tools
Generic commandline interface to run an Alida operator.
ALDOpRunner(String[]) - Constructor for class de.unihalle.informatik.Alida.tools.ALDOpRunner
Construct a ALDOpRunner using args
ALDOpRunnerGUI - Class in de.unihalle.informatik.Alida.tools
Generic graphical user interface to run Alida operators.
ALDOpRunnerGUI() - Constructor for class de.unihalle.informatik.Alida.tools.ALDOpRunnerGUI
 
ALDOutputPort - Class in de.unihalle.informatik.Alida.operator
Output port within an opNode.
ALDOutputPort(ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOutputPort
Construct an output port within the given opNode with index idx and descriptorName as role of the port.
ALDParameterDescriptor - Class in de.unihalle.informatik.Alida.operator
This class describes generic parameters in Alida used, e.g., in parameterized classes and operators.
ALDParameterDescriptor() - Constructor for class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
 
ALDParameterDescriptor(String, Class<?>, String, String, boolean, Field, int, Parameter.ExpertMode, String, Parameter.ParameterModificationMode, boolean) - Constructor for class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Constructor.
ALDParameterPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Class for configuring sets of parameters via GUI in Alida.
ALDParameterPanel(ALDParameterPanelParent, LinkedList<? extends ALDParameterDescriptor>, String, boolean, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Default constructor.
ALDParameterPanelParent - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Parent class for all GUI components making use of ALDParameterPanel.
ALDParameterPanelParent() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanelParent
 
ALDParameterTester - Class in de.unihalle.informatik.Alida.demo
Dummy operator class for demo and testing of input parameter types.
ALDParameterTester() - Constructor for class de.unihalle.informatik.Alida.demo.ALDParameterTester
Default constructor.
ALDParameterTester.EnumSelection - Enum in de.unihalle.informatik.Alida.demo
 
ALDParameterWrapper - Class in de.unihalle.informatik.Alida.operator
This class is a wrapper for all parameters of a ALDOperator.
ALDParameterWrapper(ALDOperator) - Constructor for class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
Create an instance for the parameters of op
ALDParametrizedClass - Annotation Type in de.unihalle.informatik.Alida.annotations
Classes annotated by this annotation are handle by Alida's DataIO.
ALDParametrizedClassConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Configuration window for parametrized class objects.
ALDParametrizedClassConfigWindow(Class<?>, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Default constructor.
ALDParametrizedClassConfigWindow(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Default constructor.
ALDParametrizedClassConfigWindow(Object, ALDParameterDescriptor, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Default constructor.
ALDParametrizedClassDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
DataIO provider for parametrized classes and operators from command line.
ALDParametrizedClassDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
 
ALDParametrizedClassDataIOHelper - Class in de.unihalle.informatik.Alida.dataio.provider.helpers
Helper class to configure and handle parametrized class objects.
ALDParametrizedClassDataIOHelper() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
 
ALDParametrizedClassDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Class for generic handling of parameterized classes in GUI.
ALDParametrizedClassDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
Default constructor.
ALDParametrizedClassDataIOSwing.ParametrizedClassPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing
GUI element class for parametrized class parameters.
ALDParametrizedClassDataIOSwing.ParametrizedClassShowButton - Class in de.unihalle.informatik.Alida.dataio.provider.swing
Button to visualize parametrized class objects.
ALDParametrizedClassDataIOXmlbeans - Class in de.unihalle.informatik.Alida.operator
DataIO provider for parametrized classes and operators from command line.
ALDParametrizedClassDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans
 
ALDParametrizedClassDummy - Class in de.unihalle.informatik.Alida.dataio.provider.helpers
This class only serves as a proxy for Alida's dataIO system to look up DataIO providers for parametrized classes.
ALDParametrizedClassDummy() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDummy
 
ALDParser - Class in de.unihalle.informatik.Alida.helpers
Helper class for parsing/formatting objects for data I/O in Alida.
ALDParser() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDParser
 
ALDPort - Class in de.unihalle.informatik.Alida.operator
This is the abstract super class of all ports which act as proxies to receive or supply objects within a processing graph.
ALDPort(String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDPort
Construct a port object
ALDPortHash - Class in de.unihalle.informatik.Alida.operator
Hashmap keeping links between objects and data ports in processing history.
ALDPortHash() - Constructor for class de.unihalle.informatik.Alida.operator.ALDPortHash
Constructor without function.
ALDPortHashAccess - Class in de.unihalle.informatik.Alida.operator
Interface to the port hash map of Alida.
ALDPortHashAccess() - Constructor for class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
Constructor without function.
ALDProcessingDAG - Class in de.unihalle.informatik.Alida.operator
This class handles the construction of a processing DAG from opNode instances and writing this processing history as extended graphml to file.
ALDProcessingDAG() - Constructor for class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
 
ALDProcessingDAG.HistoryType - Enum in de.unihalle.informatik.Alida.operator
Type of the processing history to be generated.
ALDProcessingDAGException - Exception in de.unihalle.informatik.Alida.exceptions
Exception thrown in context of history graph reconstruction.
ALDProcessingDAGException(ALDProcessingDAGException.DAGExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
Constructor.
ALDProcessingDAGException.DAGExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
Possible graph exception types.
ALDProviderManagerException - Exception in de.unihalle.informatik.Alida.exceptions
Alida exception thrown by batch I/O managers.
ALDProviderManagerException(ALDProviderManagerException.ALDProviderManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException
Constructor.
ALDProviderManagerException.ALDConverterManagerException - Class in de.unihalle.informatik.Alida.exceptions
 
ALDProviderManagerException.ALDProviderManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
Possible exception types.
ALDProviderManagerExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDProviderManagerExceptionType
 
ALDSourceTargetClassPair(Class<?>, Class<?>) - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
 
ALDStandardizedDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
Abstract class providing basic methods for cmdline DataIO providers according to Alida conventions.
ALDStandardizedDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
 
ALDStandardizedDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
 
ALDStandardizedDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
 
ALDSummarizeArrayOp - Class in de.unihalle.informatik.Alida.demo
A abstract summarizing operator taking a 1D array as input and return a summarizing scalar.
ALDSummarizeArrayOp() - Constructor for class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
Default constructor.
ALDSummarizerNativeArray1DSwing - Class in de.unihalle.informatik.Alida.batch.provider.output.swing
Implementation of ALDBatchOutputSummarizerSwing for native 1D arrays.
ALDSummarizerNativeArray1DSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing
Default constructor.
ALDSummarizerNativeDataSwing - Class in de.unihalle.informatik.Alida.batch.provider.output.swing
Implementation of ALDBatchOutputSummarizerSwing for native data.
ALDSummarizerNativeDataSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeDataSwing
 
ALDSwingComponent - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Class defining Alida-specific Swing GUI components.
ALDSwingComponent() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
 
ALDSwingComponentCheckBox - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Alida-specific Swing component linked to a JCheckBox.
ALDSwingComponentCheckBox(ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
Default constructor.
ALDSwingComponentComboBox - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Alida-specific Swing component linked to a JComboBox.
ALDSwingComponentComboBox(ALDParameterDescriptor, Vector<ALDSwingComponentComboBoxItem>) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
Default constructor.
ALDSwingComponentComboBox.ComboBoxTooltipRenderer - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Tooltip renderer class, adds a tooltip to each item in the combobox.
ALDSwingComponentComboBoxItem - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Alida-specific combobox item linked to a ALDSwingComponentComboBox.
ALDSwingComponentComboBoxItem(Object, String, String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
Default constructor.
ALDSwingComponentLabel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Alida-specific Swing component linked to a JLabel.
ALDSwingComponentLabel(String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
Default constructor.
ALDSwingComponentTextField - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Alida-specific Swing component linked to a JTextField.
ALDSwingComponentTextField(Class<?>, ALDParameterDescriptor, int) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
Default constructor.
ALDSwingValueChangeEvent - Class in de.unihalle.informatik.Alida.dataio.provider.swing.events
Event type for reporting changes of values in provider GUI elements.
ALDSwingValueChangeEvent(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent
Default constructor.
ALDSwingValueChangeEvent(Object, ALDParameterDescriptor, String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent
Default constructor with arguments.
ALDSwingValueChangeListener - Interface in de.unihalle.informatik.Alida.dataio.provider.swing.events
Listener interface for change value events reported by provider GUI elements.
ALDSwingValueChangeReporter - Class in de.unihalle.informatik.Alida.dataio.provider.swing.events
Reporter interface for change value events in Alida Swing GUI components.
ALDSwingValueChangeReporter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
 
ALDTableWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
GUI window for displaying tables in Alida.
ALDTableWindow(DefaultTableModel) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
Default constructor.
ALDTableWindow(DefaultTableModel, Object) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
Default constructor.
ALDTableWindow.DataTabFileFilter - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Internal class that realizes a FileFilter for text files where MiToBo table data is stored.
ALDTableWindow.TableConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
Window class for configuring the table appearance and export.
ALDTableWindow.TableModelDelimiter - Enum in de.unihalle.informatik.Alida.dataio.provider.swing.components
Delimiters available when writing a model to a string or file.
ALDToplevelOperator - Class in de.unihalle.informatik.Alida.operator
This class is just a dummy opNode acting as the first opNode with the stack of active opNodes of each thread.
ALDToplevelOperator() - Constructor for class de.unihalle.informatik.Alida.operator.ALDToplevelOperator
Construct a (dummy) top level opNode
ALDTransposeMatrix - Class in de.unihalle.informatik.Alida.demo
Operator for transposing matrices.
ALDTransposeMatrix() - Constructor for class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix
Default constructor.
ALDTransposeMatrix(int[][]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix
Constructor.
ALDVectorNativeArrayConverter - Class in de.unihalle.informatik.Alida.dataconverter
Converts 1D arrays of native data types to Vector data types.
ALDVectorNativeArrayConverter() - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
Default constructor.
ALDVersionProvider - Class in de.unihalle.informatik.Alida.version
Info class providing version information for auto-documentation.
ALDVersionProvider() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProvider
 
ALDVersionProviderCmdLine - Class in de.unihalle.informatik.Alida.version
Info class providing version information parsed from commandline.
ALDVersionProviderCmdLine() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderCmdLine
 
ALDVersionProviderDummy - Class in de.unihalle.informatik.Alida.version
Dummy version info class always returning "unknown" as version.
ALDVersionProviderDummy() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderDummy
 
ALDVersionProviderFactory - Class in de.unihalle.informatik.Alida.version
Factory for dynamic instantiation of version providers at runtime.
ALDVersionProviderFactory() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
 
ALDVersionProviderGit - Class in de.unihalle.informatik.Alida.version
Version provider to extract version information from local Git repository.
ALDVersionProviderGit() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
 
ALDVersionProviderReleaseJar - Class in de.unihalle.informatik.Alida.version
Info class which provides Alida operators with version information from a version file distributed with the release jar archive.
ALDVersionProviderReleaseJar() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
 
ALDWeakHashMapEntry - Class in de.unihalle.informatik.Alida.helpers
Weak reference hashmap entry.
ALDWeakHashMapEntry(int, Object, Object, ALDWeakHashMapEntry, ReferenceQueue<Object>) - Constructor for class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry
Constructor.
ALDWorkflow - Class in de.unihalle.informatik.Alida.workflows
Class to model a workflow in Alida.
ALDWorkflow(String) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Constructor for a workflow in a grappa context.
ALDWorkflow(String, ALDWorkflow.ALDWorkflowContextType) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Constructor
ALDWorkflow() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Constructor for an untitled workflow in a grappa context.
ALDWorkflow(ALDWorkflow.ALDWorkflowContextType) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Constructor for an untitled workflow
ALDWorkflow.ALDWorkflowContextType - Enum in de.unihalle.informatik.Alida.workflows
workflow context types.
ALDWorkflow.COMPATIBILITY - Enum in de.unihalle.informatik.Alida.workflows
 
ALDWorkflow.ExecuteThread - Class in de.unihalle.informatik.Alida.workflows
This thread executes all non-ready nodes in the given order.
ALDWorkflowClassEvent - Class in de.unihalle.informatik.Alida.workflows.events
Event type related to Alida work flows.
ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
Constructor.
ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
Constructor.
ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType, String, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
Constructor.
ALDWorkflowClassEvent.ALDWorkflowClassEventType - Enum in de.unihalle.informatik.Alida.workflows.events
Types of events.
ALDWorkflowClassEventListener - Interface in de.unihalle.informatik.Alida.workflows.events
Listener interface for `Alida` workflow events.
ALDWorkflowClassEventType() - Constructor for enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent.ALDWorkflowClassEventType
 
ALDWorkflowContextType() - Constructor for enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.ALDWorkflowContextType
 
ALDWorkflowDataIOXmlbeans - Class in de.unihalle.informatik.Alida.workflows
DataIO provider for ALDWorkflow from xml using xmlbeans.
ALDWorkflowDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
 
ALDWorkflowEdge - Class in de.unihalle.informatik.Alida.workflows
This class represents an edge within an work flow.
ALDWorkflowEdge(ALDWorkflowNode, String, ALDWorkflowNode, String) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Create an edge with the given source and target.
ALDWorkflowEdgeID - Class in de.unihalle.informatik.Alida.workflows
Class to index a work flow edge
ALDWorkflowEdgeID() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdgeID
Create a new edge is
ALDWorkflowEvent - Class in de.unihalle.informatik.Alida.workflows.events
Event type related to Alida work flows.
ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Constructor.
ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Constructor.
ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType, String, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Constructor.
ALDWorkflowEvent(ALDWorkflowEvent) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Constructor.
ALDWorkflowEvent.ALDWorkflowEventType - Enum in de.unihalle.informatik.Alida.workflows.events
Types of events.
ALDWorkflowEventListener - Interface in de.unihalle.informatik.Alida.workflows.events
Listener interface for `Alida` workflow events.
ALDWorkflowEventManager - Class in de.unihalle.informatik.Alida.workflows
 
ALDWorkflowEventManager(ALDWorkflowEventListener) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
 
ALDWorkflowEventReporter - Interface in de.unihalle.informatik.Alida.workflows.events
Interface for classes that generate events of type ALDWorkflowEvent.
ALDWorkflowEventType() - Constructor for enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent.ALDWorkflowEventType
 
ALDWorkflowException - Exception in de.unihalle.informatik.Alida.exceptions
Exception mainly thrown by ALDWorkflow in case of failures.
ALDWorkflowException(ALDWorkflowException.WorkflowExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
Constructor.
ALDWorkflowException.WorkflowExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
 
ALDWorkflowHelper - Class in de.unihalle.informatik.Alida.workflows
 
ALDWorkflowHelper() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper
 
ALDWorkflowID - Class in de.unihalle.informatik.Alida.workflows
Class to index a work flow object.
ALDWorkflowID(Integer) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowID
Create an id object.
ALDWorkflowNode - Class in de.unihalle.informatik.Alida.workflows
This class represents a node in an Alida work flow.
ALDWorkflowNode(ALDWorkflow, ALDOperator) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Create a node
ALDWorkflowNode(ALDWorkflow, ALDOperator, boolean) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Create a node
ALDWorkflowNode.ALDWorkflowNodeState - Enum in de.unihalle.informatik.Alida.workflows
 
ALDWorkflowNodeID - Class in de.unihalle.informatik.Alida.workflows
Class to index a work flow node.
ALDWorkflowNodeID() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowNodeID
Create a new node id.
ALDWorkflowNodeState() - Constructor for enum de.unihalle.informatik.Alida.workflows.ALDWorkflowNode.ALDWorkflowNodeState
 
ALDWorkflowRunFailureInfo - Class in de.unihalle.informatik.Alida.workflows.events
This class holds information related to a run failure event
ALDWorkflowRunFailureInfo(Exception, ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
 
ALDWorkflowRunFailureInfo(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
 
ALDWorkflowStorageInfo - Class in de.unihalle.informatik.Alida.workflows.events
 
ALDWorkflowStorageInfo(String, ALDWorkflow) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
 
alidaIcon - Variable in class de.unihalle.informatik.Alida.helpers.ALDIcon
The icon by itself.
alidaWorkflow - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Reference to the underlying Alida workflow object.
alidaWorkflow - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Reference to the underlying Alida workflow object.
allDataports - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
 
allEdges - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
 
allInstances - Static variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
 
allOpNodes - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
 
allowAdditionalFields - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
If true additional fields/variables and so on should be tolerated by providers
allowedClassForIO(Class<?>) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Is this class allowed as Input and/or Output?
applicationLocations - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
 
applicationTreeModel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Tree of available operators for standard level.
ApplyToMatrix - Class in de.unihalle.informatik.Alida.demo
Demo operator to apply a summarizing operation to a 2D array in row or column wise fashion.
ApplyToMatrix() - Constructor for class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Default constructor.
ApplyToMatrix(Double[][]) - Constructor for class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Constructor.
ApplyToMatrix.SummarizeMode - Enum in de.unihalle.informatik.Alida.demo
Choose row or colum wise sum
ApproachMax() - Constructor for class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ApproachMax
 
ApproachMin() - Constructor for class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ApproachMin
 
args - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner
command line arguments.
args - Variable in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
command line arguments.
array_Intege_2D - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
array_Integer - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
array_String - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
array_String_2D - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
arrayClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
Class of array to configure.
arrayClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Class of array to configure.
ArrayConfigPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
Constructor.
ArrayConfigPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Constructor.
ArrayConfigWindow(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Default constructor.
ArrayConfigWindow(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Default constructor.
arrayDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
Descriptor of parameter linked to array.
arrayDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Descriptor of parameter linked to array.
arrayField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
Parameter field of array to configure.
arrayField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Parameter field of array to configure.
arrayRows - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
Number of rows in array.
arrayRows - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
Number of rows in array.
ArrayShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayShowButton
Constructor.
ArrayShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayShowButton
Constructor.
arrayToString(Object) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
Formats an array according to Alida data I/O conventions.
AuxNode(ALDOperatorLocation) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode
Constructor.
AuxNode() - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode
Default constructor.
availableClasses - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
List of available classes.
availableClasses - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
List of available classes.

B

barrierLock - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Lock used only for its memory effects.
BarrierLock() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap.BarrierLock
 
baseline - Variable in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
The baseline detected
baseline - Variable in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
The baseline detected
Baseline1D - Class in de.unihalle.informatik.Alida.demo
This class holds a baseline for 1D data which essentially is a straight line as a 1D function.
Baseline1D() - Constructor for class de.unihalle.informatik.Alida.demo.Baseline1D
Standard constructor is required
Baseline1D(Double, Double) - Constructor for class de.unihalle.informatik.Alida.demo.Baseline1D
 
baselineCorrected - Variable in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Are the data baseline corrected?
batchConfigPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Configuration panel for batch mode.
batchInputIterator - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Iterator for batch mode input parameter.
batchInputParameter - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Name of batch mode input parameter.
batchModeActive - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Flag to indicate if batch mode is active.
batchOutputParameter - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
List of batch mode output parameters.
batchOutputResultMap - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Batch mode result objects.
boxItemNone - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
Default item if no value is selected.
boxItemNone - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
Default item if no value is selected.
brackets - Static variable in class de.unihalle.informatik.Alida.helpers.ALDParser
Hashmap to hold pairs of opening and closing brackets.
buildInputPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Builds up the input panel, only called on construction.
buildWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Generates the window.
buildWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Generates the window.
buttonColor_ready - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Default run button color of ready operators.
buttonColor_runnable - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Default run button color of runnable operators.
buttonColor_running - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Default run button color of running operators.
buttonColor_unconfigured - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Default run button color of unconfigured operators.

C

callback - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Associated callback method.
capacity() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Returns the number of slots in this table.
cell - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge
Graph object to which the menu is to be attached.
changeViewMode(Parameter.ExpertMode) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Switches view mode of the panel.
changeViewMode(Parameter.ExpertMode) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Changes the view mode.
checkDataflowStateChange(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Updates the state of this node according to the states of its parents.
checkLocalStateChange(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Updates the state of this node according to its local configuration.
checkParentStates(ALDWorkflowNode, ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Check if all parents of the given node have a state at least requiredState.
checkValue() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
Method that handles events triggered by the text field.
children - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode
Children of this node.
children - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
children of this opNode, will be set during back tracing
ChooserTreeMouseAdapter() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame.ChooserTreeMouseAdapter
 
classes - Static variable in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing
List of supported classes.
classes - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
List of supported classes.
classes - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
List of supported classes.
classesAllowed(ALDOpParameterDescriptor, ALDOpParameterDescriptor, ALDWorkflowEdge) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Check if class of source parameter is assignable to target parameter or may be converted by a converter provider or is incompatible
classloader - Static variable in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter
Class loader to be used for searching SezPoz annotation indices.
className - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Name of parametrized class to configure.
classname - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
The canaonical class name of the ALDData bound to the port.
className - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
 
classSelection - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
Combobox containing available classes to select.
classSelection - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
Combobox containing available classes to select.
clear() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Removes all mappings from the map.
clearTreeSelection() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
clone() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Returns a shallow copy of this ConcurrentReaderHashMap instance.
clone() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
Clone an instance
clone() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Clones an instance.
cloneProperties() - Method in class de.unihalle.informatik.Alida.operator.ALDData
Clone the property hash of this obejct.
closeButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Button to close the configuration window.
closeWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
Closes the GUI table window.
closeWindow() - Static method in class de.unihalle.informatik.Alida.gui.OnlineHelpDisplayer
Closes the online help window if it is currently displayed.
collectExpandedPackages(TreePath, String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Collect the package names (for operators) and path (for workflows) which are currently expanded.
collectInstances - Static variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
if true all instances of ALDOpNode will be collected in a static Vector.
CollectionConfigButton(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
Constructor.
CollectionConfigWindow(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Default constructor.
CollectionShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionShowButton
Constructor.
ComboBoxTooltipRenderer(Vector<ALDSwingComponentComboBoxItem>) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox.ComboBoxTooltipRenderer
Default constructor.
comment - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDException
Exception comment.
compare(Double, Double) - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ApproachMax
 
compare(Double, Double) - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ApproachMin
 
compare(ALDParameterDescriptor, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator.DescriptorComparator
 
compareTo(ALDSwingComponentComboBoxItem) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
 
COMPATIBILITY() - Constructor for enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.COMPATIBILITY
 
compatible(Class, Class) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
Checks compatibility of wrapper and primitive classes.
compCheckBox - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
Associated Swing component.
compComboBox - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
Associated Swing component.
compLabel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
Associated Swing component.
completeDAG - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
Does this operator prefer a complete DAG or a data dependency DAG.
completeDAG - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
This opnode prefers a complete DAG to constructed for its invocation.
compMap - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Maps a parameter descriptor to its component in the GUI.
compMapLinkBak - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Maps a parameter to the component shown if parameter is linked (in Grappa).
componentMap - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
Map of compenents displayed in frame.
compTextField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
Associated Swing component.
confButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
Button to open configuration window.
confButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
Button to create and configure array.
confButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Button to open configuration window.
configButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
Button to open configuration window.
configButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
Button to open configuration window.
configPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
GUI component associated with this Swing component.
configPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
GUI component associated with this Swing component.
configPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
Panel containing buttons.
configPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Sub-panel containing operator parameters.
configurationEventlistenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
List of configuration event listeners attached to this reporter.
configureCollectionApplicationOps() - Static method in class de.unihalle.informatik.Alida.tools.ALDGrappaRunner
Configure collection of operators belonging to the application set.
configureCollectionStandardOps() - Static method in class de.unihalle.informatik.Alida.tools.ALDGrappaRunner
Configure collection of operators belonging to the standard set.
configureWorkflow(ALDConfigurationEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 
configWindows - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Map of node cells and their corresponding configuration windows.
configWins - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
Hashmap to store configuration windows for classes.
configWins - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
Hashmap to store configuration windows for classes.
confPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
Configure button for operator as parameter.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
Collection configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
Array configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Collection configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
Operator configuration window.
confWin - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
Operator configuration window.
ConstructioMode() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperator.ConstructioMode
 
constructionMode - Static variable in class de.unihalle.informatik.Alida.operator.ALDOperator
Mode of implicit construction of the processing graph.
containsKey(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Tests if the specified object is a key in this table.
ContextMenuGraph() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuGraph
Default constructor.
ContextMenuNodeEdge(int, int) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge
Default constructor for context menu.
controlEventlistenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
List of control event listeners attached to this reporter.
controlWin - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Corresponding configuration and control window.
convert(Object, Type[], Class<?>, Type[]) - Method in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter
Convert the sourceObject into an object of class targetClass.
convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
Convert the sourceObject into an object of class targetClass.
convert(ALDDataConverter, Object, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
Convert the sourceObject into an object of class targetClass.
convert(Object, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
 
convert(Object, Class<?>) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
Convert the sourceObject into an object of class targetClass.
convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
 
convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
 
converter - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
a data converter to convert source to target class if necessary, i.e. the class of the target parameter is not assignable from the source parameter
converterManager - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
converter manager singleton instance
convolve(Double[], Double[]) - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
Convolve data with the kernel.
copy(Field) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
 
copyConfiguration(ALDOperatorParameterPanel) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
TODO Function should usually not be required...
copyConfiguration(ALDParameterPanel) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
 
copyNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Copy this node.
copyWorkflowNodeLinksOnly(ALDOperator, mxCell, ALDOperator, int, int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Copies only the links of a workflow node to a new node of same type.
correctedExtrema - Variable in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
Corrected extrema
correctedExtrema - Variable in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
Corrected extrema
CorrectForBaseline1D - Class in de.unihalle.informatik.Alida.demo
Operator to correct the extrema with respect to a baseline.
CorrectForBaseline1D() - Constructor for class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
Default constructor.
count - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
The total number of mappings in the hash table.
createALDXMLWorkflowEgdeType(ALDWorkflowEdge, HashMap<ALDWorkflowNode, Integer>) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
Crreate a xml object for a workflow edge
createALDXMLWorkflowNodeType(ALDWorkflowNode) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
Create a xml object for a workflow node
createChildWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Add a new workflow as a child to this workflow.
createChildWorkflow(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Add a new workflow as a child to this workflow.
createClassLocation(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
Creates and returns a new location for an class extending ALDOperator.
createCopy() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Create a clone of this event with the same time stamp
createEdge(ALDWorkflowNodeID, String, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
This method calls createEdge with the argument allowDataConversion = false.
createEdge(ALDWorkflowNodeID, String, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Add an edge representing the data flow between the parameter sourceParameterName in the operator represented by the node with sourceNodeId to the parameter targetParameterName in the operator represented by the node with targetNodeId.
createGraphmlDocument(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Create the processing history for sourceObjOfHistory and convert to graphml object.
createGraphmlDocument(Object, ALDProcessingDAG.HistoryType) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Create the processing history for sourceObjOfHistory and convert to graphml object.
createGraphmlDocument(Object, ALDProcessingDAG.HistoryType, boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Create the processing history for sourceObjOfHistory and convert to graphml object.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
Create a gui element which may be used to request the user to input data.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputIteratorSwing
Interface method to create a GUI element for batch data input.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
 
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
 
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
Create a gui element which may be used to request the user to input data of class cl.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing
Interface method to create a GUI element for data input.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
Generic reading of collections.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
Generate GUI element for generic reading of enumeration types.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
 
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
Generic reading of 1D arrays.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
Generic reading of 2D arrays.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
 
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
 
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor, boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
Method to actually create the GUI element for the parameter requested.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
Generates the GUI element.
createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
 
createInParameterPanel(Boolean, Boolean, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Create a panel with an entry for each input parameter as requested.
createNewWorkflowEdge(mxCell, ALDWorkflowNodeID, ALDGrappaNodePortInfo, ALDWorkflowNodeID, ALDGrappaNodePortInfo) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Adds a new edge object to the graph.
createNewWorkflowNode(ALDOperatorLocation, int, int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Creates a new workflow node.
createNode(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Add a new operator node to this workflow.
createNode(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Add a new operator node to this workflow.
createNode(ALDOperator) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Add a new operator to this workflow.
createOperator() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
Create an ALDOperator form this location object.
createOpTreeModel(Collection<ALDOperatorLocation>, String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
 
createTree(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode
Generates the ModelTree using the tree represented with AuxNodes.
createWorkflowFileLocation(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
Creates and returns a new location for a file holding a work flow.
currentIndex - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
Index of iterator in set.
currentIndex - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
Index of iterator in set.
currentVersionProvider - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
Stores name of current version provider class.

D

DAGExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException.DAGExceptionType
 
data - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionShowButton
Data to be displayed.
data - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayShowButton
Data to be displayed.
data - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayShowButton
Data to be displayed.
data - Variable in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
Input data array.
data - Variable in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
Input 1D array
data - Variable in class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix
Input data array.
data - Variable in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
The data
dataArray - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
Data.
dataArray - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
Data.
dataIOObj - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing.GrappaLinkTextField
 
dataIOOrder - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Data I/O order in GUI.
dataTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Data table (swing tables are nicer than imageJ tables).
dataTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Data table (swing tables are nicer than imageJ tables).
dataTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
Data table (swing tables are nicer than imageJ tables).
DataTabFileFilter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
 
DataTabFileFilter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
 
DataTabFileFilter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
 
dataTabModel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Reference object to the data.
dataTabModel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Reference object to the data.
dataTabModel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
Reference object to the data.
de.unihalle.informatik.Alida.annotations - package de.unihalle.informatik.Alida.annotations
Defines all annotations used within the Alida framework.
de.unihalle.informatik.Alida.annotations.indexing - package de.unihalle.informatik.Alida.annotations.indexing
Contains helper classes related to annotation indexing in Alida.
de.unihalle.informatik.Alida.batch - package de.unihalle.informatik.Alida.batch
Package containing classes for batch mode.
de.unihalle.informatik.Alida.batch.provider.input - package de.unihalle.informatik.Alida.batch.provider.input
Package containing input providers for batch mode.
de.unihalle.informatik.Alida.batch.provider.input.swing - package de.unihalle.informatik.Alida.batch.provider.input.swing
Package containing batch input providers for Swing GUIs.
de.unihalle.informatik.Alida.batch.provider.output - package de.unihalle.informatik.Alida.batch.provider.output
Package containing output provider classes for batch mode.
de.unihalle.informatik.Alida.batch.provider.output.swing - package de.unihalle.informatik.Alida.batch.provider.output.swing
Package containing batch output providers for Swing GUIs.
de.unihalle.informatik.Alida.dataconverter - package de.unihalle.informatik.Alida.dataconverter
 
de.unihalle.informatik.Alida.dataio - package de.unihalle.informatik.Alida.dataio
Package containing I/O related classes like managers and providers.
de.unihalle.informatik.Alida.dataio.provider - package de.unihalle.informatik.Alida.dataio.provider
Package containing data I/O providers and helpers.
de.unihalle.informatik.Alida.dataio.provider.cmdline - package de.unihalle.informatik.Alida.dataio.provider.cmdline
Package containing data I/O providers for commandline presenters.
de.unihalle.informatik.Alida.dataio.provider.helpers - package de.unihalle.informatik.Alida.dataio.provider.helpers
Package containing data I/O provider helper classes.
de.unihalle.informatik.Alida.dataio.provider.swing - package de.unihalle.informatik.Alida.dataio.provider.swing
Package containing data I/O providers for GUIs based on Java Swing.
de.unihalle.informatik.Alida.dataio.provider.swing.components - package de.unihalle.informatik.Alida.dataio.provider.swing.components
 
de.unihalle.informatik.Alida.dataio.provider.swing.events - package de.unihalle.informatik.Alida.dataio.provider.swing.events
 
de.unihalle.informatik.Alida.dataio.provider.xmlbeans - package de.unihalle.informatik.Alida.dataio.provider.xmlbeans
Package containing data I/O providers for xmlbeans presenters.
de.unihalle.informatik.Alida.datatypes - package de.unihalle.informatik.Alida.datatypes
Package containing data types defined by Alida.
de.unihalle.informatik.Alida.demo - package de.unihalle.informatik.Alida.demo
Demonstrator package of how to implement and use Alida operators.
de.unihalle.informatik.Alida.exceptions - package de.unihalle.informatik.Alida.exceptions
Defines Alida exceptions.
de.unihalle.informatik.Alida.grappa - package de.unihalle.informatik.Alida.grappa
Contains all resources for the graphical programming editor Grappa.
de.unihalle.informatik.Alida.gui - package de.unihalle.informatik.Alida.gui
Package containing GUI components for interactive operator selection/control.
de.unihalle.informatik.Alida.helpers - package de.unihalle.informatik.Alida.helpers
Contains miscellaneous helper classes used in Alida.
de.unihalle.informatik.Alida.operator - package de.unihalle.informatik.Alida.operator
Contains the core of Alida, i.e. the operator concept and processing graph stuff.
de.unihalle.informatik.Alida.operator.events - package de.unihalle.informatik.Alida.operator.events
Definitions of Alida events and corresponding reporter and listener interfaces.
de.unihalle.informatik.Alida.tools - package de.unihalle.informatik.Alida.tools
Tools for generic operator execution.
de.unihalle.informatik.Alida.version - package de.unihalle.informatik.Alida.version
Classes for handling software version information.
de.unihalle.informatik.Alida.workflows - package de.unihalle.informatik.Alida.workflows
Classes related to workflows in Alida.
de.unihalle.informatik.Alida.workflows.events - package de.unihalle.informatik.Alida.workflows.events
Contains all events appearing in context of workflows in Alida.
debug - Static variable in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter
For internal debugging purposes.
debug - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
For internal debugging purposes only.
debug - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
For internal debugging purposes
debug - Static variable in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
 
debug - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
 
debug - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
For internal debugging purposes
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
output debugging info?
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
debug messages
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
debugging output
debug - Static variable in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDCollectionDataIOHelper
Flag to output debug infos.
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
Local debug flag, not accessible from outside of the class.
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
output debugging info?
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
 
debug - Variable in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
debugging output
debug - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
for debug message to stdout
debug - Variable in class de.unihalle.informatik.Alida.gui.ALDBatchOperatorResultFrame
Local debug flag.
debug - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Debug flag (not accessible from outside).
debug - Static variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Debug flag (not accessible from outside).
debug - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
Local debug flag.
debug - Static variable in class de.unihalle.informatik.Alida.helpers.ALDClassInfo
Debug flag for internal usage only.
debug - Static variable in class de.unihalle.informatik.Alida.helpers.ALDParser
 
debug - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
 
debug - Variable in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans
debug messages
debug - Static variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
debug flag for debugging output.
debug - Static variable in class de.unihalle.informatik.Alida.operator.GraphmlHelper
turns debugging on
debug - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner
debug flag for additional debuging information.
debug - Variable in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
debug flag for additional debuging information.
debug - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
For debugging information
debug - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
debug messages
debug - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper
 
DEFAULT_INITIAL_CAPACITY - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
The default initial number of table slots for this table (32).
DEFAULT_LOAD_FACTOR - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
The default load factor for this table (1.0).
defaultTarget - Static variable in class de.unihalle.informatik.Alida.gui.OnlineHelpDisplayer
Name of the default target page within the helpset.
defaultVersionProvider - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
Fallback provider if nothing else specified.
defObject - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Default collection object.
delButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Button to delete an element;
delCol - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Button for deleting a column.
delimButtonSpace - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
Button for selecting spaces as delimiters.
delimButtonTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
Button for selecting tabs as delimiters.
delimiter - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
Delimiter to be used for table export to file.
delRow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Button for deleting a row.
delRow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Button for deleting a row.
DemoWorkflow1D - Class in de.unihalle.informatik.Alida.demo
Operator implementing a workflow using ExperimentalData1D.
DemoWorkflow1D() - Constructor for class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
Default constructor.
depth - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
depth in calling stack of Operators, set when back tracing
DERIVEDCLASS_CHAR - Static variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
As a convention this character starts a derived class name, and is terminated by ':'
description - Variable in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Description
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionShowButton
Descriptor associated with parameter object belongs to.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Optional descriptor for additional information on parameter.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayShowButton
Optional descriptor for additional information on parameter.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Optional descriptor for additional information on parameter.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayShowButton
Optional descriptor for additional information on parameter.
descriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Optional descriptor granting access to additional parameter information.
DescriptorComparator() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperator.DescriptorComparator
 
descriptorName - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
The descriptor name of this port within opNode
DetectBaseline1D - Class in de.unihalle.informatik.Alida.demo
Operator to detect a baseline in the data of an ExperimentalData1D.
DetectBaseline1D() - Constructor for class de.unihalle.informatik.Alida.demo.DetectBaseline1D
Default constructor.
DetectLocalExtrema1D - Class in de.unihalle.informatik.Alida.demo
Operator to detect local extrema in the data of an ExperimentalData1D.
DetectLocalExtrema1D() - Constructor for class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
Default constructor.
DetectLocalExtrema1D.ApproachMax - Class in de.unihalle.informatik.Alida.demo
 
DetectLocalExtrema1D.ApproachMin - Class in de.unihalle.informatik.Alida.demo
 
DetectLocalExtrema1D.ExtremaType - Enum in de.unihalle.informatik.Alida.demo
 
DetectLocalExtrema1D.State - Enum in de.unihalle.informatik.Alida.demo
are we approaching the next extremum, are values equal, or are we departing the last extremum?
Direction() - Constructor for enum de.unihalle.informatik.Alida.annotations.Parameter.Direction
 
direction - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Direction of the port.
direction - Variable in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
Direction of this parameter
directionAllowd(ALDWorkflowNode, ALDOpParameterDescriptor, ALDWorkflowNode, ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Checks if the direction are allowed Source parameter
If the source node represents the workflow, the source parameter needs to be of direction IN or INOUT.
directlyRegisteredChildren - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
children of this opNode, set when the operate() represented by this opNode calls nested operators.
directoryDefault - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
Default directory to be used initially.
dirPath - Variable in class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString
Name of directory including full path.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Deactivates the configuration window to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Disable table and buttons to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Disable table and buttons to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Disables the operator configuration panel.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Disable component to prohibit value changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
Method to disable the component, i.e. all graphical elements, to prohibit parameter changes.
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
 
disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
 
disableComponent() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
 
disableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Disables all components in the different sub-panels.
disableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Disables all components in this panel.
disableStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
Reset flag for step-wise execution.
disableValueChecks - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Flag to disable entry validation checks.
displayFailureMessageWindow(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Displays window with detailed error information on execution failures.
displayMode - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Mode for displaying parameters.
displayMode - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Mode for displaying parameters.
displayMode - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Mode for displaying parameters.
displayMode - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Mode for displaying parameters.
displayOnly - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Flag to indicate if editing is allowed or only display is requested.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Disposes this window and all sub-components.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Disposes all resources of this window.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Disposes all resources of this window.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Disposes all resources of this window.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Disposes all resources of this window and its sub-windows.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Disposes all components in the different sub-panels.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Disposes all components in this panel.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Dispose component and all sub-windows.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
Releases all resources, i.e. closes all sub-windows.
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
 
dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
 
dispose() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
 
dispose() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
 
doHistory - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
If true writeData should try to write the history to file if the object itself is written to a file
doHistory - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
If true writeData should try to write the history to file if the object itself is written to a file
doMeanFree - Variable in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
Compute mean free data
doNextBatchModeStep() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 
doNextStepInWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 
donotrun - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner
If true, the operator will not be invoked but only its interface printed to stdout.
doStateChange(ALDWorkflowNode, ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Set the new state in the node and fire corresponding event.
doStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
Return flag for step-wise execution.
downButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Button to move an element downwards.

E

edgeAllowed(ALDWorkflowEdge, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Check if this edge is allowed.
edgeIdsToString(Collection<ALDWorkflowEdge>) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Formats the ids of the given edges into a string for debugging purposes.
edgeIdToEdge - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Hash map of edges of this workflow.
edges - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
All edges of this workflow.
edgeToEdgeId - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
editsAllowed - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Flag to enable/disable editing.
elapsedTime - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Elpased time
elemClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Collection element class.
elemComps - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
List of current GUI components in window.
elemCounter - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Number of elements.
elementClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Class that table entries should represent.
elemField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Collection element field.
elemFieldType - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Collection element type.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Reactivates the configuration window to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Enable table and buttons to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Enable table and buttons to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Enables the operator configuration panel.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Enable component to allow for value changes.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
Method to enable the component with all graphical elements again.
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
 
enableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
 
enableComponent() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
 
enableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Enables all components in the different sub-panels.
enableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Enables all components in this panel.
enableStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
Set flag for step-wise execution.
entryClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Class of objects to be filled in the table.
entryRefList - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
List of currently specified values (to restore entry if check fails).
entryRefList - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
List of currently specified values (to restore entry if check fails).
EnumSelection() - Constructor for enum de.unihalle.informatik.Alida.demo.ALDParameterTester.EnumSelection
 
epsilon - Variable in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
Size of neighborhood is 2*epsilon+1
eq(Object, Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Check for equality of non-null references x and y.
equals(Object) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
 
errorListToMessage(LinkedList<Integer>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Error function displaying an error message box.
errorListToMessage(LinkedList<int[]>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Error function displaying an error message box.
eType - Variable in class de.unihalle.informatik.Alida.operator.events.ALDControlEvent
Type of the event.
eType - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
Type of the event.
eType - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Type of the event.
eventMessage - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkflowTabChangeEvent
Message string, freely configurable.
eventMessage - Variable in class de.unihalle.informatik.Alida.operator.events.ALDEvent
Message string, freely configurable.
eventQueue - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
The event queue associated with the listener
EventType() - Constructor for enum de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent.EventType
 
exception - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
Exception which caused the run failure, may be null
execProxy - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Reference to the surrounding workflow manager.
executeNode(ALDWorkflow, ALDWorkflowNode, boolean) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
This actually runOps the operator in its own thread and takes care of firing events for state changes.
executeNonReadyNodes(List<ALDWorkflowNode>, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run all not ready nodes of the list in the given order.
executeOperator(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Executes the chosen operator, i.e. opens the config/control window.
ExecuteThread(ALDWorkflow, List<ALDWorkflowNode>) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow.ExecuteThread
 
executionInterrupted - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Deprecated.
ExecutionMode() - Constructor for enum de.unihalle.informatik.Alida.annotations.ALDAOperator.ExecutionMode
 
experiment - Variable in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.ReadExperimentalData1D
1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.SmoothData1D
1D Experiment
experiment - Variable in class de.unihalle.informatik.Alida.demo.WriteExperimentalData1D
1D Experiment
ExperimentalData1D - Class in de.unihalle.informatik.Alida.demo
This class is a toy implementation of experimental data for a demo of Alida's parametrized classes.
ExperimentalData1D() - Constructor for class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Standard constructor is required
ExperimentalData1D(String, Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Constructor for an experiment.
ExperimentalData1D(String, Double[], boolean, Float) - Constructor for class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Constructor for an experiment.
ExpertMode() - Constructor for enum de.unihalle.informatik.Alida.annotations.Parameter.ExpertMode
 
explanation - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
The explanation of this port.
explanation - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Explanatory string.
extrema - Variable in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
Extrema
extrema - Variable in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
Local extrema detected
extrema - Variable in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
Extrema of un-smoothed data
extrema - Variable in class de.unihalle.informatik.Alida.demo.WriteExtrema1D
1D Experiment
Extrema1D - Class in de.unihalle.informatik.Alida.demo
 
Extrema1D() - Constructor for class de.unihalle.informatik.Alida.demo.Extrema1D
Standard constructor is required
extremaSmoothedData - Variable in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
Extrema detected in smoothed data
extremaType - Variable in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
Type of extrema
ExtremaType() - Constructor for enum de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D.ExtremaType
 

F

failureMessageWin - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Corresponding configuration and control window.
fatal(String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Output fatal error to stderr and throw an exception
favoriteOperators - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
List of favorite operators to be unfolded at startup.
field - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Field corresponding to parameter.
fieldContained(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Does any hash table contain the key, i.e. this field?
fileDefault - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
Default file name in current working directory.
FileDirectoryDataIOPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
Default constructor.
FILEIO_CHAR - Static variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
As a convention a parameter value starting with this character indicates that the actual parameter should be read from or writen to a file.
filename - Variable in class de.unihalle.informatik.Alida.demo.ReadExperimentalData1D
Filename
filename - Variable in class de.unihalle.informatik.Alida.demo.WriteExperimentalData1D
Filename
filename - Variable in class de.unihalle.informatik.Alida.demo.WriteExtrema1D
Filename
filename - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
 
filePath - Variable in class de.unihalle.informatik.Alida.datatypes.ALDFileString
Name of file including complete path information.
filterField - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Text field to enter filter to select operators
filterField - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Text field to enter filter to select operators
findALDOperators(String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
Find operator with given pattern among all annotated ALDOperators and return the full qualified names as a list.
findCurrentThreadsOpNodeStack() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Find the opNode stack for the current thread.
findDataIds(DataType, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
 
findEdgeIds(EdgeType, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Insert edgeId and associated nodes into the translationTable.
findIds(GraphType, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Traverse the graph, find all graphIDs and insert into the translationTable.
findInstantiableSubclasses(Class, String) - Static method in class de.unihalle.informatik.Alida.helpers.SubclassFinder
Returns all sub-classes of T that can be instantiated, i.e.
findNodeIds(NodeType, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Insert nodeId and associated attributes into the translationTable.
findOperators(String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
This method is call once to populate the member matchingClassNames.
findSibblingsAndParent(ALDOpNode, Vector<ALDInputPort>, int) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Find all sibblings and the parent of opNode.
findSubclasses(Class, String) - Static method in class de.unihalle.informatik.Alida.helpers.SubclassFinder
Returns all sub-classes of T including interfaces and abstract classes that are located in a package below startPackage.
findSubclasses(String, Class, String) - Static method in class de.unihalle.informatik.Alida.helpers.SubclassFinder
 
fireALDConfigurationEvent(ALDConfigurationEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
 
fireALDConfigurationEvent(ALDConfigurationEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventReporter
Sends an event to all registered listeners.
fireALDControlEvent(ALDControlEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
 
fireALDControlEvent(ALDControlEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventReporter
Sends the given event to all registered listeners.
fireALDOpParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Sends an event to all registered listeners.
fireALDOpParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEventReporter
Sends the given event to all registered listeners.
fireALDSwingValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
Sends an event to all registered listeners.
fireALDWorkflowClassEvent(ALDWorkflowClassEvent) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Fire an event by the class ALDWorkflow.
fireALDWorkflowEvent(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
fireALDWorkflowEvent(ALDWorkflowEvent) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventReporter
Sends the given event to all registered listeners.
fireOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Sends an event of changed execution progress to all registered listeners.
fit(double[], double[]) - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
least squares fit through points given with their x and y coordinates.
floatIn - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
floatParameterName - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
focusGained(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.TableFocusListener
 
focusGained(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.TableFocusListener
 
focusGained(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
 
focusLost(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.TableFocusListener
 
focusLost(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.TableFocusListener
 
focusLost(FocusEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
 
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
Returns the string representations of collection.
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
 
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
 
formatAsString(Object, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
Format all parameters of this parametrized class annotated with ALDClassParameter into a string.
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
Generic formatter to string of parametrized classes.
formatAsString(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
Returns the string representations of this object This method is assumed to directly format the obj into the string return and make no prior interpretation regarding a file to be used.
formatAsString(Object, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
Returns the external representations of this object using a formatString.
frameHeightMin - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Fixed minimal height of the configuration window.
frameWidth - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Fixed width of window.
frameWidth - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Fixed width of window.
frameWidthMin - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Fixed minimal width of window.

G

generateAccessFunction(ALDOpParameterDescriptor, String) - Static method in class de.unihalle.informatik.Alida.tools.GenerateGetterSetter
Generate access function code.
generateAccessFunctionNoAnnotation(ALDOpParameterDescriptor, String) - Static method in class de.unihalle.informatik.Alida.tools.GenerateGetterSetter
Deprecated. 
GenerateGetterSetter - Class in de.unihalle.informatik.Alida.tools
Generates code for getter/setter methods for an ALDOperator.
GenerateGetterSetter() - Constructor for class de.unihalle.informatik.Alida.tools.GenerateGetterSetter
 
generateHelpMenu() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
Function to setup the help menu.
generateHelpMenu() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Sets up the help menu.
generateHelpMenu() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Sets up the help menu.
genuineInstance - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
Genuine object representing the operation.
get(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Returns the value to which the specified key is mapped in this table.
getActionPositionX() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
Returns the x-coordinate of the action's position.
getActionPositionY() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
Returns the y-coordinate of the action's position.
getALDPortHashAccessKey() - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get a reference to the port hash access object.
getAllInstances() - Static method in class de.unihalle.informatik.Alida.operator.ALDOpNode
 
getAncestors() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Return all ancestors of this node.
getAnnotatedFields(Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
Return all fields for member variables of myclass or any of its super classes which is annotated with ALDClassParameter.
getBaseline() - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
 
getBaseline() - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
 
getBatchInputParameters() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Returns selected input parameters for batch mode.
getBatchOutputParameters() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Returns selected output parameters for batch mode.
getCallback() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
 
getChildren() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get the all opNode children found during back tracing.
getChildren() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Return all children nodes of this node.
getClassname() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
Return the canonical classname of the ALDData associated with this port
getClassName() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
 
getClassName() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
Returns version provider class according to environment configuration.
getCommentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
Returns comment string.
getConfigValue(String, String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
Gets the value of a property from the environment.
getConfigValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
Reads the value of the specified property from the environment.
getConstructionMode() - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
Return the current mode of implicit construction ALDOperator.constructionMode.
getConverter() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
 
getCorrectedExtrema() - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
 
getCorrectedExtrema() - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
 
getData() - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
Returns the 1D array
getData() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Return the data
getDataIOOrder() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Returns data I/O order of parameter.
getDataPortId(ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Return an ID used in graphml for a data port
getDebug() - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Return the debug state
getDelimiterString() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
Returns the currently selected delimiter string.
getDepth() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get depth.
getDescendants() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Return the nodeIds of all descendants of the given node.
getDescription() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
 
getDescription() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow.DataTabFileFilter
 
getDescription() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
 
getDescription() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Get description.
getDescriptorName() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
Return the descriptor name of the port within its opNode
getDirDialog - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
File/directory chooser dialogue.
getDirection() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
Returns parameter direction.
getDirectlyRegisteredChildern() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get the all opNode children directly registered during invocation.
getDirectoryName() - Method in class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString
Returns current name of directory.
getDummyInitializer(Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
Method to instantiate dummy object of requested class for default.
getEdge(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Get the workflow edge associated with edgeId.
getEdge(ALDWorkflowNode, String, ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Get the workflow edge connecting given edges and parameters.
getEdgeIdDuringLoading(Integer) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the edgeId of the idx-th edge according to the order of the edges in the external representation resulting from (last) loading this workflow.
getEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return a collection of all edges of this workflow
getElapsedTime() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Get value of elapsedTime.
getEntryNum() - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash
Returns the number of objects currently stored in the port hash.
getEnvVarValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
Reads the value of the specified property from environment variables.
getEpsilon() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
 
getEventMessage() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkflowTabChangeEvent
Returns individual message string.
getEventMessage() - Method in class de.unihalle.informatik.Alida.operator.events.ALDEvent
Returns individual message string.
getEventMessage(int) - Method in class de.unihalle.informatik.Alida.operator.events.ALDEvent
Returns individual message string formatted to a maximal line length.
getEventQueue(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Returns the event queue associated with the listener or null it the listener is not registered.
getEventType() - Method in class de.unihalle.informatik.Alida.operator.events.ALDControlEvent
Returns type of event.
getEventType() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
Returns type of event.
getEventType() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Returns type of event.
getException() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
 
getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOException
Returns string characterising exception type.
getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOException
Returns string characterising exception type.
getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
Returns string characterising exception type.
getExecutionProgressDescr() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
 
getExecutionStatus() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
Get the current execution status of the operator.
getExperiment() - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
 
getExperiment() - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
 
getExperiment() - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
 
getExperiment() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
 
getExplanation() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
Return the explanation of the port copied from the argument descriptor
getExplanation() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Returns explanation for parameter.
getExtension(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
Gets extension from the filename, if any.
getExtrema() - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
 
getExtrema() - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
 
getExtrema() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
 
getExtremaSmoothedData() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
 
getExtremaType() - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
 
getField() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Returns a reference to the field of the parameter.
getFileName() - Method in class de.unihalle.informatik.Alida.datatypes.ALDFileString
Returns current file name value.
getFileName(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
Returns name without leading directories or file description (extension).
getFilename() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
 
getGraphId(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Get the graphIP at the beginning of an id up (exculing) idSeparator
getGraphmlHistory() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
Get the grahphml history of this data port
getGraphName(int) - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Return an ID used in graphml for graph
getHandlingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Returns mode of parameter handling.
getHelpActionListener(Component, String, JFrame) - Static method in class de.unihalle.informatik.Alida.gui.OnlineHelpDisplayer
Get an ActionListener linked to the Alida online help system.
getHidingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Return the hidingMode of this operator during execution via runOp.
getHidingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get hiding mode of this opNode.
getHistoryLink(Object) - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash
Get port to which object is currently linked in the history.
getHistoryLink(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
Get the port to which the object is currently linked in history.
getIcon() - Method in class de.unihalle.informatik.Alida.helpers.ALDIcon
Get reference to the icon.
getId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Return the id associated with this edge.
getId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Return the Id associated with this node.
getId() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
Returns the index of the even
getId() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Returns the index of the even
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException
 
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException
 
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException
 
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException
 
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException
 
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
Returns a (hopefully unique) identification string.
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException
 
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
 
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException
 
getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
 
getIdentStringWithoutType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
Returns the ident string in a user-friendly format without type info.
getIncludedData() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get all included data ports found during back tracing.
getInEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Returns all incoming edges.
getInEdgesForParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Return all incoming edges for this node which have their target at parameterName.
getInInoutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the names of in or inout parameters.
getInInoutNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the names of in or inout parameters.
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
Method to request initial value a provider sets in GUI.
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing
Interface method to request initial GUI values of provider.
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwingInitialGUIValueDefaultHandler
 
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
 
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
 
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
 
getInitialGUIValue(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
 
getInNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the names of in parameters.
getInOutNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the names of inout parameters.
getInputParamIterator(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Returns an iterator for a specific input parameter in batch mode.
getInputPort(int) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get input port with index i of this opNode.
getInputPorts() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get all input ports of this opNode.
getInstance() - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
Return the single instance of this class
getInstance() - Static method in class de.unihalle.informatik.Alida.helpers.ALDIcon
Get singleton instance.
getIntercept() - Method in class de.unihalle.informatik.Alida.demo.Baseline1D
 
getItemText() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
Get textual representation of object.
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
Method to request the provider's GUI element.
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
 
getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
 
getJComponent() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
 
getJPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Get access to the main panel.
getJPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Method to access associated panel.
getJVMPropValue(String, String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
Reads the value of the specified property from JVM properties.
getJVMPropValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
Reads the value of specified property from JVM properties.
getKey() - Method in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry
Returns the key of this hashmap element.
getLabel() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Returns label for parameter.
getLastSelectedPathComponent() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
 
getLength() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
 
getLevel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Return current mode of usage.
getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox.ComboBoxTooltipRenderer
 
getLocation() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode
Get location object.
getLocation() - Method in class de.unihalle.informatik.Alida.operator.ALDData
Get the location property, i.e. property with key location
getLocation() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
Get the location property, i.e. property with key location
getMappingEdgeIdToInteger() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the current mapping of EdgeIds to integer ids.
getMappingIntegerToEdgeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the current mapping of integer ids to EdgeIds.
getMappingIntegerToNodeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the current mapping of integer ids to NodeIds.
getMappingNodeIdToInteger() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the current mapping of NodeIds to integer ids.
getMatrix() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Get value of matrix.
getMessage() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
 
getMissingRequiredInputs() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Deprecated.
getMissingRequiredInputs(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Returns the names of all required input parameters of the operator object associated with the node which are not linked and have a value of null.
getMissingRequiredInputs() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Returns the names of all required input parameters of the operator object associated with the node which are not linked and have a value of null
getMyclass() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Returns class of parameter.
getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the name of this operator
getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
Returns the proper name of this location
getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get the name of the operator represented by this opNode.
getName() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Returns name of parameter.
getNewConfigWin(ALDOperator, ALDGrappaWorkbenchTab.ParameterUpdateListener) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Generate a new configuration window.
getNewConfigWin(ALDOperator) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Generate a new configuration window.
getNext() - Method in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry
Returns reference to subsequent hash element.
getNode() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
 
getNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Get the workflow node associated with nodeId.
getNodeID() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
 
getNodeIdDuringLoading(Integer) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the nodeId of the idx-th node according to the order of the nodes in the external representation resulting from (last) loading this workflow.
getNodeName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
Returns name of node.
getNodes() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return a collection of all nodes of this workflow
getNodeStyleString(String) - Static method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Method to properly format node style string.
getNodeWithoutSources(HashMap<ALDWorkflowNode, Set<ALDWorkflowNode>>) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Returns one node from the sourceNodeMap with zero source nodes, if any.
getNumberOfMeasurements() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Return number of measurements, i.e. the length of the 1D data
getNumEntries() - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
Returns the number of objects currently stored in the history database.
getNumParameters() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the number of parameters
getObject() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
Get the object associated with this item.
getOperator() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Get a reference to the operator object.
getOperator(String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
This method is called to instantiate the ALDOperator.
getOperator(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Get the operator associated with nodeId.
getOperator() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Returns the operator associated with this node.
getOperatorClass() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get the class object of the operator represented by this opNode.
getOperatorExecutionProgressDescr() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
 
getOperatorSearchPaths() - Static method in class de.unihalle.informatik.Alida.helpers.ALDClassInfo
 
getOpNameFilter() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
 
getOpNode() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
Return the opNode of this port
getOpNodeId(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Return an ID used in graphml an opNode
getOrigin() - Method in class de.unihalle.informatik.Alida.operator.ALDPort
Get the origin of this port, which is the parent in the processing graph.
getOriginatingOperator() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
 
getOutEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Returns all outgoing edges.
getOutEdgesForParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Return outgoing edges for this node which have their source at parameterName.
getOutInoutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the names of out or inout parameters
getOutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the names of out parameters
getOutputPort(int) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get output port with index i of this opNode.
getOutputPorts() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get all output ports of this opNode.
getPackageName() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
 
getParamDescriptor() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent
Get descriptor of associated (operator) parameter.
getParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the value of a parameter specified by name.
getParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get value of parameter for given key.
getParameterDescriptor(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the parameter descriptor for given name.
getParameterDescriptors(ALDOperatorParameterPanel.ParameterType) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Gets all the parameter descriptors of the given type.
getParameteres() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
 
getParameterHashAsXml() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get the parameter hash where values of parameters.
getParameterKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get all keys of the parameter hash.
getParameterNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the names of all parameters
getParameterValue(boolean, boolean, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Get the current value for a paramter.
getParameterValue(boolean, boolean, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanelParent
Method to allow ALDParameterPanel to request parameter values.
getParameterValue(boolean, boolean, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
 
getParameterValueVec() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
Get a reference to the input parameter value vector.
getParent() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get the parent opNode.
getParents() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Return all parents of this node.
getParentWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
 
getPartsOfName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
Return the parts of the name within a hierarchy, e.g. package structure or package structure
getPath(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
Get path.
getPermanent() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
 
getPortClassName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Returns the class name of the port/parameter datatype.
getPortDirection() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Returns the direction of the port/parameter.
getPortExplanation() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Returns the explanation of the port/parameter.
getPortId(ALDPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Return an ID used in graphml for a port
getPortIndex() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
Return the index of the port within its opNode
getPortLabel() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Returns the label of the port/parameter.
getPortName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Returns the name of the port/parameter.
getProperties() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
Return the properties associated with this port which have been retrieved from the data as it passed the port.
getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDData
Get a property value for the given key.
getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
Get a property value for the given key.
getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort
Return property with key
getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDData
Get the keys of all properties set in this data object
getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
Get the keys of all properties set in this data object
getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort
Return all keys of the property hash of this output port
getProvider(Class<?>, Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
Method to return an instance of the batch input provider for given class.
getProvider(Class<?>, Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
Method to return an instance of the batch output provider of the requested class.
getProvider(Class<?>, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
Method to return an instance of the data converter provider for given classes.
getProvider(Class<?>, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
 
getProvider(Class, Class) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
Method to return an instance of the DataIO provider class for the class cl which implements the requested interface interfaceRequired (which has itself to implement ALDDataIO).
getProviderInstance() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
Returns a reference to the currently selected provider object.
getProviderInstance(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
Returns a reference to the provider object of the specified class.
getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
Returns the current level of provider interaction.
getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
Returns the current level of provider interaction.
getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
Returns the current level of provider interaction.
getProviderMap() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
Method to return a clone of the mapping of classes to dataIO providers.
getRefID() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
Returns the reference ID of the node.
getRefinedExtrema() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
 
getReleaseVersion(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
Returns the release version/tag of the current jar archive.
getReleaseVersion() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
Returns the tag/release version.
getRepositoryInfo() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
Returns information about current commit.
getResultDataVec() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
Get a reference to the result data vector.
getResultMean() - Method in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
Returns the calculated mean value.
getReturnElapsedTime() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Get value of returnElapsedTime.
getShadowNodeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
getSigma() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
 
getSlope() - Method in class de.unihalle.informatik.Alida.demo.Baseline1D
 
getSmoothedExperiment() - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
 
getSmoothedExperiment() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
 
getSmoothingMethod() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
 
getSourceClass() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
 
getSourceNode() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Returns the source node.
getSourceNodeId(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the NodeId of the source node of this edge
getSourceParameterName(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the source parameter name of this edge
getSourceParameterName() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Returns the parameter name of the source.
getSourcePort() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge
Return the source port of the edge.
getState(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Get the state of node with nodeId.
getState() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Returns the current state of this node
getStepSize() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
Return desired step size.
getSummaries() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Get value of summaries.
getSummarizeMode() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Get value of summarizeMode.
getSummarizeOp() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Get value of summarizeOp.
getSummary() - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
Returns the Summarizing scalar
getSums() - Method in class de.unihalle.informatik.Alida.demo.MatrixSum
Returns the calculated sums.
getSupplemental() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
Returns if parameter is supplemental.
getSupplementalNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the names of supplemental parameters
getTableForReading() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Get ref to table; the reference and the cells it accesses will be at least as fresh as from last use of barrierLock
getTargetClass() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
 
getTargetNode() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Returns the target node.
getTargetNodeId(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the NodeId of the target node of this edge
getTargetParameterName(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Return the target parameter name of this edge
getTargetParameterName() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Returns the parameter name of the target.
getTargetPort() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge
Return the target port of the edge.
getText() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
Returns text of text field.
getTimeResolution() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Get time resolution in milliseconds.
getTimeStamp() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Returns the timestamp of this event.
getTooltip() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
Get tooltip text.
getToolTipForCell(Object) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph
 
getTooltipText(Object) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Function to return tooltip text for a cell.
getToplevelGraph(GraphmlType) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Return the first element of type Graph found at the top level of the graphml object
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException
Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException
Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException
Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException
Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException
Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException
Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException
Returns the type of this exception.
getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
Returns the type of this exception.
getType() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEvent
Get the event's type.
getValue(Field, Object) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
Return the value of the member variable associated with field in the object obj.
getValue() - Method in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry
Returns the value of this hashmap element.
getValue(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
 
getValueStringFromFile(String) - Static method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
The complete content of the file is return as one string.
getVerbose() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Get value of verbose.
getVerbose() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Return the verbose state of this opertor.
getVersion() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Get the version of this operator
getVersion() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Get the software version.
getVersion() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
 
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProvider
Returns the software version of currently running instance.
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderCmdLine
 
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderDummy
 
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
 
getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
 
getWidth() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
 
getWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
 
getWorkflowContext() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
getWorkflowName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Returns name of currently active workflow.
getWorkflowThreadStatus() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Returns current status of workflow thread.
getWorkflowTitle() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Returns the workflow title.
getX(int) - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
Return the x coordinate of the i-th extremal point
getX() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
 
getY(Double) - Method in class de.unihalle.informatik.Alida.demo.Baseline1D
Return the function value of this baseline for coordinate x.
getY(int) - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
Return the y coordinate of the i-th extremal point
getY() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
 
graphEdgeIDs - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Map of edge cells and their corresponding Alida workflow IDs.
graphEdges - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Map of Alida workflow IDs and their corresponding edge cells.
GraphEventListener() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphEventListener
 
graphIndex - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
This index is the index used to build the prefix for all Ids for elements for the next history to add to the current graphml.
GraphKeyListener() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
 
GraphmlHelper - Class in de.unihalle.informatik.Alida.operator
This class supplies some static auxiliary methods used when explicitly constructing a history graph.
GraphmlHelper() - Constructor for class de.unihalle.informatik.Alida.operator.GraphmlHelper
 
graphmlHistory - Variable in class de.unihalle.informatik.Alida.operator.ALDDataPort
The processing history as graphml if any.
GraphMouseAdapter() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphMouseAdapter
 
graphNodeIDs - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Map of node cells and their corresponding Alida workflow IDs.
graphNodes - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Map of Alida workflow IDs and their corresponding node cells.
GrappaLinkTextField(ALDGrappaLinkDataIOSwing) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing.GrappaLinkTextField
 
grappaMainWin - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
Reference to main window of grappa.
grappaMenu - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Menubar.
guiProxys - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
List of active GUI managers.
guiUsageAllowed(Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
Internal helper to request GUI-suitability of an operator.

H

handleAddNodeEvent(ALDOperator, ALDWorkflowNodeID, int, int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Adds a node to the workflow graph.
handleAddNodeEvent(ALDOperator, ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Adds a node to the workflow graph.
handleALDConfigurationEvent(ALDConfigurationEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
 
handleALDConfigurationEvent(ALDConfigurationEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventListener
Method which is called on event occurence.
handleALDControlEvent(ALDControlEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
 
handleALDControlEvent(ALDControlEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventListener
Method which is called on event occurence.
handleALDParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ParameterUpdateListener
 
handleALDParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.ParameterUpdateListener
 
handleALDParameterUpdateEvent(ALDOpParameterUpdateEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEventListener
Method which is called on event occurence.
handleALDWorkflowClassEvent(ALDWorkflowClassEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
handleALDWorkflowClassEvent(ALDWorkflowClassEvent) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEventListener
Method which is called on event occurrence.
handleALDWorkflowEvent(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
 
handleALDWorkflowEvent(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 
handleALDWorkflowEvent(ALDWorkflowEvent) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventListener
Method which is called on event occurrence.
handleInputPorts(ALDOpNode, Vector<ALDInputPort>, Vector<ALDInputPort>, LinkedList<ALDOutputPort>) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Trace back each port of inputPorts which are input ports of a child of parentOpNode.
handleLoadWorkflowEvent(ALDWorkflowClassEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
handleNodeParameterChangeEvent(Collection<ALDWorkflowNodeID>) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Update node's configuration window according to parameter status.
handleNodeParameterChangeEvent(Collection<ALDWorkflowNodeID>) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Update parameter labels according to configuration states.
handleNodeStateChangeEvent(Collection<ALDWorkflowNodeID>) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Update node color according to node's state.
handleNodeStateChangeEvent(Collection<ALDWorkflowNodeID>) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Update control window color according to node's state.
handleOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
 
handleOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEventListener
Method which is called on event occurence.
handleOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
 
handleOperatorExecutionProgressEvent(ALDOperatorExecutionProgressEvent) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
handlePort(ALDOpNode, ALDPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Handle a port to register the incoming edge and to potentially register dataport to opNode.
handleSaveWorkflowEvent(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Stores the workflow to the given file.
handleShowResultsEvent(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Displays result frame for given node.
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
 
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in interface de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeListener
Method which is called on event occurence.
handleValueChangeEvent(ALDSwingValueChangeEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
 
handleWorkflowRenameEvent(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
handlingMode - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Parameter mode, i.e. if to be relevant for all users or experts only.
hash(Object) - Static method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Return hash code for Object x.
hash - Variable in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry
Hash value of referenced object.
hasInOutParameters() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Return true it this operator has at least one INOUT parameter
hasNext() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
 
hasNext() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
 
hasParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Returns true if the operator has a currently active parameter of the given name, otherwise false.
hb - Static variable in class de.unihalle.informatik.Alida.gui.OnlineHelpDisplayer
Local help broker.
headerOptionalParamsPanel - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Title string for the panel with optional parameters.
headerRequiredParamsPanel - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Title string for the panel with required parameters.
headerSupplementalParamsPanel - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Title string for the panel with supplemental parameters.
helpHS - Static variable in class de.unihalle.informatik.Alida.gui.OnlineHelpDisplayer
Name of helpset to be used.
hideLeaves(TreePath) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Hide all leaves of this tree below the given path.
HidingMode() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode
 
hidingMode - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
Hiding mode of this opnode in the processing history.
historyAnchors - Static variable in class de.unihalle.informatik.Alida.operator.ALDPortHash
Hashmap of port links into the processing history.
historyType - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Type of the history to be generated.
HistoryType() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDProcessingDAG.HistoryType
 

I

id - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ParameterUpdateListener
ID of the corresponding Grappa node.
id - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.ParameterUpdateListener
Corresponding node ID.
id - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowID
This id is only to print debug information, but NOT to identify an object
idSeparator - Static variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Character separating graphId prefix from rest
ignoreEvents - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
Flag to ensure that no events are triggered if item change is triggered from internal.
ignoreHiding - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Ignore hidden flag of opnodes when creating a processing history.
includedData - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
ALDDataPorts created within this opNode, set during back tracing
includeInHistory(ALDOperator.HidingMode, ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Is this invocation to be included into the history?
inconsistent(String) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Output error to stderr
inEdges - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
all incoming edges.
info - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
info - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Flag to indicate if it is just an info parameter.
info - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
ID of work flow object
info - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
ID of work flow object
infoString - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
infoText - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
init() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Does the main work to instantiate the frame.
initAdapter() - Static method in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter
Initialization routine for this class.
initAdapter(ClassLoader) - Static method in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter
Initialization routine for this class.
initDataType() - Method in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
initDone - Static variable in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter
Variable to check if init routine was called.
initFavoriteOperators() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Initialize list of favorite operators to be unfolded at startup.
initHelpset(String) - Static method in class de.unihalle.informatik.Alida.gui.OnlineHelpDisplayer
Explicitly init the helpset, i.e. set helpset prefix.
initInterruptWin() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Setup of the window for renaming workflows.
initMapTable(Class<?>) - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
Method to initialize the hashmap which registers batch input providers.
initMapTable(Class<?>) - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
Method to initialize the hashmap which registers batch output providers.
initMapTable() - Static method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
Method to initialize the hashmap which registers data conversion providers.
initMapTable(Class) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
Method to initialize the hashmap which registers DataIO providers.
initNewTab(ALDGrappaWorkbenchGraph) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
initNewWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
initNewWorkflow(ALDGrappaWorkbenchGraph) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
initOperator() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Initializes a new operator object with default configuration.
initPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Inits the panel according to formerly specified descriptors.
initReloadedTab(mxGraph, ALDWorkflow) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
initReloadedWorkflow(mxGraph, ALDWorkflow) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
initRenameWin() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Setup of the window for renaming workflows.
initWorkbench() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
 
inputCheckBoxes - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Set of checkboxes to select input parameters in batch mode.
inputPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
The top level panel of this frame.
inputParameterValues - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
List of input values for parameter.
inputPorts - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
the input ports of this opNode.
inputProviderComps - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Components in GUI linked to the different input batch parameters.
insertGraphId(String, HashMap<String, String>, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Insert id into if not already included.
instance - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
The singleton instance of this class.
instance - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
The singleton instance of this class
instance - Static variable in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
The singleton instance of this class.
instance - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
The singleton instance of this class
instance - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
The singleton instance of this class
instance - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
The singleton instance of this class
instance - Static variable in class de.unihalle.informatik.Alida.helpers.ALDIcon
Singleton reference.
instantiateObject(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
Instantiates an object of the specified version provider class.
intercept - Variable in class de.unihalle.informatik.Alida.demo.Baseline1D
intercept
interiorShadowNode - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
This node is used as an interior shadow (or substitute) for the node holding this workflow.
interruptExecution() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Aborts running execution of the workflow.
interruptExecution() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Aborts running execution of the workflow.
interruptExecution() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Deprecated.
interruptWin - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Message window shown while workflow execution is aborted.
interruptWorkflowExecution() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
intIn - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
intParameterName - Static variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
invoke(Object, mxEventObject) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphEventListener
 
ioPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
Swing component to be integrated in GUI.
isAllowAdditionalFields() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
 
isAnnotatedParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Returns true if the operator has an annotated parameter name irrespective whether this parameter is currently active or not
isBaselineCorrected() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
Query if data are baseline corrected.
isBatchModeActive() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Check if batch mode is currently active.
isClassNameSpecified() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
Returns true if the factory can be properly configured.
isCompleteOpnode(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Is a complete history to be created for this opNode?
isConfigured() - Method in interface de.unihalle.informatik.Alida.datatypes.ALDConfigurationValidator
Returns true if the object is properly configured.
isConfigured() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
 
isConfigured() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Checks if this node is configured.
isDirectory - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
Flag indicating if panel refers to a directory parameter or not.
isDoHistory() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
 
isDoHistory() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
 
isEmpty() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Returns true if this map contains no key-value mappings.
isEnabled - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Flag to remember if window is enabled or disabled.
isExactSubstring(String, String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
return true, if substr is a exact substring of str
isHiddenOpnode(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Should we hide this opnode.
isInfo() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
 
isInteriorShadowNode - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Is true it his node is used as an interior shadow (or substitute) for the node holding this work flow {see ALDWorkflow.
isNeedConverter() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
 
isOperator() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode
Is this node a operator?
isOperatorNull() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Allows to check if window is linked to operator object or not.
isParamLinked - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Map keeping track if parameters are linked or not (in Grappa).
isRegistered(Object) - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash
Returns true if the given object is already registered in the hash.
isRegistered(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
Check if an object is registered in the hash.
isRequired() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Returns is parameter is required.
isResetDisconnectedInput() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
isTermiate() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
 
isToplevelOpnode(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Is this an opNode of the toplevel operator.
isTriggerValueChangeEvents() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
Returns value of event trigger flag.
isTriggerValueChangeEvents() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
Returns value of event trigger flag.
isTriggerValueChangeEvents() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
Returns value of event trigger flag.
isVisible() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Method to query if configuration window is visible.
item - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
Item linked to the combobox entry.
items - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox.ComboBoxTooltipRenderer
List of items represented by combobox.
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
 
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
 
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
 
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
 
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
 
itemStateChanged(ItemEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
 
itemText - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
Textual representation of the object.

K

keyPressed(KeyEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
 
keyReleased(KeyEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
 
keyTyped(KeyEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
 
killWorkflowThread() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 

L

label - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Label of the parameter.
labelMap - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Maps a descriptor to its JLabel component in the panel.
lastAdded - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Stores the index of last element added (may vary due to element swaps).
lastDir - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
For convenience: always open last directory for saving.
lastDir - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
For convenience: always open last directory for saving.
lastDir - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
For convenience: always open last directory for saving.
lastDirectory - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
Last directory selected by user.
lastDirectory - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Last directory visited, initially it's user's home.
lastFile - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
Last file selected by user.
lastFile - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Last selected file.
lastID - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdgeID
variable to count IDs
lastID - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNodeID
variable to count IDs
lastLoadFilePath - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
lastSaveFilePath - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
lastSelectedLocation - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Stores the recently selected path in the chooser tree.
lastWrite - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
field written to only to guarantee lock ordering.
length - Variable in class de.unihalle.informatik.Alida.demo.Extrema1D
Only to test changeValueHook
Level() - Constructor for enum de.unihalle.informatik.Alida.annotations.ALDAOperator.Level
 
level - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Mode of usage.
linkedDataObject - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
Optional data object linked to the table model.
listener - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
The listener for which to handle events
listenerList - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
List of registered event listeners.
listenerList - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
List of registered event listeners.
load(Class<A>, Class<I>) - Static method in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter
 
load(String) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Load a workflow from file with filename and create a new workflow object.
load(String, boolean) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Load a workflow from file with filename and create a new workflow object.
load(File) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Load a workflow from File and create a new workflow object.
load(File, boolean) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Load a workflow from File and create a new workflow object.
loadFactor - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
The load factor for the hash table.
loadFactor() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Returns the load factor.
loadIndexToEdgeId - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Gives the edgeIds of last loading of this workflow from an external representation in the order as store externally.
loadIndexToNodeId - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Gives the nodeIds of last loading of this workflow from an external representation in the order as store externally.
loadTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Loads contents of the table from a user-specified file.
loadTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Loads contents of the table from a user-specified file.
loadWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Loads a new workflow from file(s).
localVersion - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
Version info string.
location - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree.AuxNode
location object for this node.
location - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode
The location object for this node.
locationType - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
Type of this location
LocationType() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperatorLocation.LocationType
 
logger - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Slf4j logger.
logger - Static variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Slf4j logger.
logger - Static variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Slf4j logger.
logger - Static variable in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
Init a logger object.
lookupExtendingClasses(Class) - Static method in class de.unihalle.informatik.Alida.helpers.ALDClassInfo
Collects all derived class of given class.
lookupOperatorClassnames(ALDAOperator.Level, ALDAOperator.ExecutionMode) - Static method in class de.unihalle.informatik.Alida.helpers.ALDClassInfo
Collects all ALDOperators annotated with the requested level and execution mode and all ALDOperators found in a package specified by a JVM property alida_oprunner_favoriteops or the environment variable ALIDA_OPRUNNER_OPERATORPATH as a colon separated list of package names.
lookupOperators(ALDAOperator.Level, ALDAOperator.ExecutionMode) - Static method in class de.unihalle.informatik.Alida.helpers.ALDClassInfo
Collects all ALDOperators annotated with the requested level and execution mode and all ALDOperators found in a package specified by a JVM property alida_oprunner_favoriteops or the environment variable ALIDA_OPRUNNER_OPERATORPATH as a colon separated list of package names.
lookupParameternames(ALDOperator, String) - Static method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
Lookup all parameter names of the operator with prefix pre.
lookupParameternames(ALDOperator, String) - Static method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans
Lookup all parameter names of the operator with prefix pre.
lookupType(Field) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDCollectionDataIOHelper
 
lookupWorkflows() - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper
Collects work flows from files and return location objects.
lookupWorkflows(String) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper
Collects work flows from files and return location objects.

M

main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.ALDGrappaRunner
Main function called from outside.
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
Main routine of ALDOpRunner , see usage.
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.ALDOpRunnerGUI
 
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.GenerateGetterSetter
Main function.
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
Main routine of ALDOpRunner , see usage.
main(String[]) - Static method in class de.unihalle.informatik.Alida.tools.PrintOperatorInterface
Extracts operator interface from given class.
mainButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
Button to open configuration window.
mainFrame - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Main panel of main frame.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Main panel of main frame.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
Main panel.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
Main panel containing elements for class selection.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Main panel containing all operator parameters.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
The main panel containing everything.
mainPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Main panel of main frame.
mainPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Main panel of chooser window.
mainPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Main panel.
makeVisibleNodes(TreePath, String, HashSet<String>) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Makes all nodes of the tree visible where the corresponding package names (of workflow paths) are contained in packageNames.
manager - Variable in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
 
mapeEdgeIdToEdge(ALDWorkflowEdgeID) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Map an edgeId to its edge.
mapEgdeToEdgeId(ALDWorkflowEdge) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
mapNodeIdToNode(ALDWorkflowNodeID) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Map a nodeId to its node.
mapNodeToNodeId(ALDWorkflowNode) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Map a node to its NodeId
mapTable - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
Hashtable containing mappings of datatypes to provider classes.
mapTable - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
Hashtable containing mappings of datatypes to provider classes.
mapTable - Variable in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
Hashtable containing mappings of class pairs to a collection of provider class names.
mapTable - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
Hashtable containing mappings of datatypes to DataIO provider classes.
markParameter(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Sets label color of parameter to red (e.g. if validation failed).
markParameterProbablyConf(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
 
matches(String, String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
Does className match the opNameFilter
matchingClassNames - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner
List of fully qualified class names of operators available
matrix - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Input matrix
matrix - Variable in class de.unihalle.informatik.Alida.demo.MatrixSum
Input matrix
MatrixSum - Class in de.unihalle.informatik.Alida.demo
Demo operator to calculate colum or row sums of a 2D array.
MatrixSum() - Constructor for class de.unihalle.informatik.Alida.demo.MatrixSum
Default constructor.
MatrixSum(Double[][]) - Constructor for class de.unihalle.informatik.Alida.demo.MatrixSum
Constructor.
MatrixSum.SummarizeMode - Enum in de.unihalle.informatik.Alida.demo
Choose row or colum wise sum
MAXIMUM_CAPACITY - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
The maximum capacity, used if a higher value is implicitly specified by either of the constructors with arguments.
mean - Variable in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
Calculated average value.
meanFreeData - Variable in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
Mean free data
median(Double[], Integer) - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
Compute the median of data within a window of width width.
messageBoard - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Text field for displaying status messages at the bottom, changes dynamically according to operator and GUI events.
messageBoardLineConfigLabel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Label attached to message board line configuration spinner.
messageBoardLineConfigSpinner - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Message board line configuration spinner.
messageBoardLineNumber - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Number of lines currently visible in ALDOperatorConfigurationFrame.messageBoard.
messageBoardScroller - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Scrollable pane containing the ALDOperatorConfigurationFrame.messageBoard.
MINIMUM_CAPACITY - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
The minimum capacity, used if a lower value is implicitly specified by either of the constructors with arguments.
modifyParamMode - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Operator interface modification mode.
mouseClicked(MouseEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame.ChooserTreeMouseAdapter
 
mousePressed(MouseEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphMouseAdapter
 
mousePressed(MouseEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame.MyMouseAdapter
 
myclass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Parametrized class to configure.
myclass - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Class of the parameter.
myDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Parameter descriptor associated with parametrized class object.
MyMouseAdapter() - Constructor for class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame.MyMouseAdapter
Constructor.
myObj - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Object to configure associated with window.

N

name - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
Name of the operator
name - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
The name of this location in the original form, e.g. a filename or a fully qualified class name
name - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
name of the operator for which an invocations is represented by this opNode
name - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Name of the parameter, i.e. its variable.
nameParameterMap - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner
Hashmap to collect parameter name as given on command line and matching parameter name.
nameValueMap - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner
Hashmap to collect parameter name as given on command line and correspnding value string
needConverter - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
This field is necessary for (de)serialization as the provider cannot be (de)serialized.
newInstance(Class) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDInstantiationHelper
 
next() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
 
next() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
 
next - Variable in class de.unihalle.informatik.Alida.helpers.ALDWeakHashMapEntry
Pointer to the next reference in hashmap list.
nextTimeStamp - Static variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
Count for (almost) unique time stamps (we allow wrap around).
node - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Node to which the port is attached.
nodeConfigShowAllParameters - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Map of window configurations for parameter display.
noDefaultHistory - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner
If true, history files are not read and written by default.
nodeID - Variable in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
ID of the workflow node for which a runOp() failed.
nodeIdsToString(Collection<ALDWorkflowNode>) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Formats the ids of the given nodes into a string for debugging purposes.
nodeIdToNode - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Hash map of operator nodes of this workflow.
nodeName - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
Name of the node, i.e. name of corresponding operator.
nodeParameterChanged(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Notify the workflow that parameters of the operator object associated with node nodeId have changed.
nodes - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow.ExecuteThread
The nodes of the workflow to execute
nodes - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
All nodes contained in this workflow
nodeToNodeId - Static variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
notifyListenersRecursively - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
Flag for recursive propagation of events to nested listeners.
numberClasses - Static variable in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
 

O

objCl - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
Class of objects to be read through this text field.
okOption - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Ok label to be used on button of Ok message boxes.
oldEdgeTarget - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
 
oldEdgeTargetParamName - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
 
OnlineHelpDisplayer - Class in de.unihalle.informatik.Alida.gui
Convenience class for context-sensitive online help.
OnlineHelpDisplayer() - Constructor for class de.unihalle.informatik.Alida.gui.OnlineHelpDisplayer
 
OnlineHelpMissingHelpListener - Class in de.unihalle.informatik.Alida.gui
Class handling requests to the online help if help files were not found.
OnlineHelpMissingHelpListener(JFrame) - Constructor for class de.unihalle.informatik.Alida.gui.OnlineHelpMissingHelpListener
Default constructor.
onlyDisplay - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Flag to disable editability of GUI elements.
op - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
The operator of this frame, may be abstract!
op - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
The operator associated with this frame.
op - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorParamDisplayFrame
Associated operator.
op - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
Associated operator.
op - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
 
op - Variable in class de.unihalle.informatik.Alida.tools.ALDOpRunner
The operator to be invoked.
op - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
The operator object associated with this node.
openWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
Shows the table window in graphical environment.
operate() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
 
operate() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDArrayMean
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDArrayMin
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDArraySum
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
 
operate() - Method in class de.unihalle.informatik.Alida.demo.CorrectForBaseline1D
 
operate() - Method in class de.unihalle.informatik.Alida.demo.DemoWorkflow1D
 
operate() - Method in class de.unihalle.informatik.Alida.demo.DetectBaseline1D
 
operate() - Method in class de.unihalle.informatik.Alida.demo.DetectLocalExtrema1D
 
operate() - Method in class de.unihalle.informatik.Alida.demo.MatrixSum
 
operate() - Method in class de.unihalle.informatik.Alida.demo.ReadExperimentalData1D
 
operate() - Method in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
 
operate() - Method in class de.unihalle.informatik.Alida.demo.SmoothData1D
 
operate() - Method in class de.unihalle.informatik.Alida.demo.WriteExperimentalData1D
 
operate() - Method in class de.unihalle.informatik.Alida.demo.WriteExtrema1D
 
operate() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
This method does the actual work and needs to be implemented by every subclass.
operate() - Method in class de.unihalle.informatik.Alida.operator.ALDToplevelOperator
The abstract method operate needs to be implemented, but this top levels operator is never to be invoked.
operate() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
operator - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Corresponding operator to be configured.
operator - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
The operator associated with this panel.
operatorClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
Class of operator to configure.
operatorClass - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Class of the operator to be configured.
operatorClass - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
class of the operator for which an invocations is represented by this opNode
OperatorConfigPanel(Class<?>, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
Constructor.
OperatorConfigWindow(ALDOperator, Class<?>, ALDParameterDescriptor, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
Default constructor.
OperatorControlStatus() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatus
 
operatorDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
Descriptor of parameter linked to operator.
OperatorExceptionType() - Constructor for enum de.unihalle.informatik.Alida.exceptions.ALDOperatorException.OperatorExceptionType
 
operatorExecStatus - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
Actual execution state of operator.
operatorExecutionEventlistenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
List of control event listeners attached to this class listening to ALDOperatorExecutionProgressEvent.
operatorExecutionProgressDescr - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
The execution progress of the operator associated with this node
OperatorExecutionStatus() - Constructor for enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorExecutionStatus
 
OperatorHierarchyConfigPanel() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
Default constructor.
operatorID - Static variable in class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable
Operator identifier.
operatorNodeID - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Reference ID of the operator node in Alida workflow;
operatorParameterPanel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Panel where operator parameters are embedded.
OperatorShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorShowButton
Constructor.
operatorStatus - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
Control status of operator, used to stop/pause/resume calculations.
opLocation - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Location of recently selected operator.
opNameFilter - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
if non null regular expression select operators
opNameJText - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Label to display selected operator.
opNode - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
The opNode of this operator during execution of runOp.
opNode - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
The opNode this port belongs to
opNodePortsTraced - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
 
opNodesClone - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
 
opNodesInGraph - Variable in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
 
opNodeStackHash - Static variable in class de.unihalle.informatik.Alida.operator.ALDOperator
A weak hashmap which contains for each thread a stack of opNodes reflecting the current state of the method stack.
opParamDescrips - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
List of all parameter descriptors associated with operator.
opParamDescrips - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
List of all parameter descriptors associated with the operator.
optionCheckboxProgressEvents - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
Checkbox in options menu to turn on/off display of progress events.
optionsWindow - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
Window for configuration of table options.
opTree - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Tree of available operators.
opTree - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
Reference to the operator chooser tree of window this menubar belongs to.
opTree - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
JComponent containing both trees of available operators.
opTreePane - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Scroll pane displaying the operator tree.
opTreePane - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Scroll pane displaying the operator tree.
origin - Variable in class de.unihalle.informatik.Alida.operator.ALDPort
The origin/producer of this port.
originatingOperator - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
 
out_array_Integer - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_array_String - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_Boolean - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_Byte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_Double - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_double - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_Float - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_Integer - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_Long - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_Short - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_vectorByte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
out_vectorDouble - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
outEdges - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
outgoing edges.
outputCheckBoxes - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Set of checkboxed to select parameters to summarize in batch mode.
outputOpNode(ALDOpNode, GraphType) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Output opNode and it ports, and recursively its children to the graph.
outputPorts - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
the output ports of this opNode.

P

p2capacity(int) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Returns appropriate capacity for argument.
packageName - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
 
panelMap - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Maps a parameter descriptor to its panel in the GUI.
panelOptionalParams - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Sub-panel managing the configuration of optional parameters.
panelParent - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Reference of parent panel to which this one belongs.
panelRequiredParams - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Sub-panel managing the configuration of required parameters.
panelSupplementalParams - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Sub-panel managing the configuration of supplemental parameters.
param_boolean - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_Boolean - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_byte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_Byte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_dir - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_double - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_Double - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_enum - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_file - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_float - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_Float - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_int - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_Integer - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_long - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_Long - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_short - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_Short - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_String - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_vectorByte - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
param_vectorDouble - Variable in class de.unihalle.informatik.Alida.demo.ALDParameterTester
 
paramDescr - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent
Descriptor of the (operator) parameter changed, if available.
paramDescrips - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Listed of associated parametrized class parameters.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Parameter descriptor of associated parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
Descriptor of the associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
Descriptor of the associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
Descriptor of associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
Descriptor of associated (operator) parameter.
paramDescriptor - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
Descriptor of associated (operator) parameter.
paramDescriptors - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
List of parameter descriptors managed by this panel.
Parameter - Annotation Type in de.unihalle.informatik.Alida.annotations
Annotation definition for operator parameters.
Parameter.Direction - Enum in de.unihalle.informatik.Alida.annotations
Enumerates the different directions a parameter may, e.g. into or out of an operator.
Parameter.ExpertMode - Enum in de.unihalle.informatik.Alida.annotations
Enumerates the different modes which are defined for a parameter to be shown in automatically generated user interfaces.
Parameter.ParameterModificationMode - Enum in de.unihalle.informatik.Alida.annotations
Defines the different modes of possible changes a parameter might do on changes of its own value.
Parameter.Type - Enum in de.unihalle.informatik.Alida.annotations
Deprecated.
parameterDescriptorsAll - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
Hash contains parameter descriptors for all currently active parameters.
parameterDescriptorsAnnotated - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
Hash contains parameter descriptors which are annotated.
parameterDescriptorsInactive - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
Hash contains parameter descriptors which has previous be active but currently inactive, i.e. removed, for potential later re-use.
parameterHash - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
This hash contains the values of all parameters as return by the toString() method of the parameters at the time of invocation of the operator using runOp().
parameterHash - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterWrapper
 
parameterHashAsXml - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
parameteHash as an XmlObject
ParameterModificationMode() - Constructor for enum de.unihalle.informatik.Alida.annotations.Parameter.ParameterModificationMode
 
parameterModificationMode() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
 
parameterName - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
Name of parameter over which was iterated.
parameterPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Parameter panel.
parameterShowModeItem - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge
Checkbox for selecting which set of parameters and ports, to show.
ParameterType() - Constructor for enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel.ParameterType
 
ParameterUpdateListener(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ParameterUpdateListener
Default constructor.
ParameterUpdateListener(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.ParameterUpdateListener
Default constructor.
ParametrizedClassPanel(Field, Class<?>, Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
Default constructor.
ParametrizedClassShowButton(Object, ALDParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassShowButton
Default constructor.
paramFrame - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
Window to display associated parameter configuration.
paramPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
GUI configuration element.
paramPanel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
GUI configuration element.
paramUpdateListener - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Listener object attached to the control window.
parent - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNode
parent of this opNode, will be set during back tracing
parentFrame - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Reference to the control frame linked to this panel.
parentWorkflow - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
This is the enclosing work flow.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
Returns a collection instantiated from valueString.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
 
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
Method to parse native data from a string.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
Parser for parametrized classes and ALDOperators.
parse(Field, Class<?>, String, ALDOperator) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
Generic Parser for parametrized classes and ALDOperators.
parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
Returns an object instantiated from valueString.
parseBracket(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
Parses a string for a matching bracket.
parseBracket(String, char) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
Parses a string for a matching bracket.
parseNameValuePairs(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
Parses a comma separated list of 'name=value' pairs into a hash map.
pauseButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Pause button, changes its label.
pauseWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 
permanent - Variable in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
If a parameter is declared as permanent it (reps. its descriptor) may not be removed from the operator
pLevel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Level of interaction providers are allowed to perform.
popRecentlySelectedOperatorLocation() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
 
popRecentlySelectedOperatorPath() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
portClassName - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
(Simple) class name of the parameter datatype.
portExplanation - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Explanation of the parameter.
portHashAccess - Static variable in class de.unihalle.informatik.Alida.operator.ALDOperator
Access to the central port hash.
portIndex - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
The index of this port within opNode
portLabel - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Label of the associated operator parameter.
portName - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
Variable name of the associated operator parameter.
postStatusMessage(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Posts a general status message in the status text field.
postSystemMessage(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Posts a system status message in the status text field.
postSystemStatusMessage(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Post a new system status message to the log window.
postWorkflowStatusMessage(String, String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Post a new status message to the log window.
print() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData1D
 
print() - Method in class de.unihalle.informatik.Alida.demo.Extrema1D
print information about this object to stdout
print() - Method in class de.unihalle.informatik.Alida.operator.ALDData
Print this data object to standard out
print() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
Print some information to System.out.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge
Print this edge to stdout.
print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDEdge
Print this edge to stdout with a given ident string.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Print some information of the current state this operator to System.out.
print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Print some information the current state of this operator to outfile.
print(PrintStream, boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Print information of the interface and values of this operator to outfile.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
Print information if this opNode to standard output.
print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
Print information of this port onto System.out
print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
Print this descriptor to outfile
print(PrintStream, ALDOperator) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
Print this descriptor to outfile.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort
Print information to standard out
print() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Print this descriptor to standard out.
print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Print this descriptor to outfile.
print() - Method in class de.unihalle.informatik.Alida.operator.ALDPort
Print some information on System.out
print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDPort
Print some information on System.out
print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Print information of this edge to standard out.
print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Print information of this node to standard out.
printData(DataType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Print a Data item to standard out using an indentation string
PrintDataIOProvider - Class in de.unihalle.informatik.Alida.tools
A helper class to adminstrate the ALDIA dataIO system.
PrintDataIOProvider(String[]) - Constructor for class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
Construct a PrintDataIOProvider using args
printEdge(EdgeType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Print an Edge to standard out using an indentation string
printException(ALDException) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
 
printGraph(GraphType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Print a graph to standard out using an indentation string
printGraphml(GraphmlType) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Print a graphml element to standard out
printInstanceStatistics() - Static method in class de.unihalle.informatik.Alida.operator.ALDOpNode
 
printInstanceStatistics(PrintStream) - Static method in class de.unihalle.informatik.Alida.operator.ALDOpNode
 
printInterface() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Print information of the interface of this operator to System.out.
printInterface(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Print information of the interface of this operator to outfile.
printMap(HashMap<String, Collection<String>>) - Static method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
 
printNode(NodeType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Print a Node to standard out using an indentation string
PrintOperatorInterface - Class in de.unihalle.informatik.Alida.tools
Prints the interface of an operator (inputs/outputs/parameters) to console.
PrintOperatorInterface() - Constructor for class de.unihalle.informatik.Alida.tools.PrintOperatorInterface
 
printPort(PortType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Print a Port to standard out using an indentation string
printUsage() - Static method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
Print short usage to stderr.
printUsage() - Static method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
Print usage to stderr.
printUsageVerbose() - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
Print verbose usage to stderr.
printUsageVerbose() - Method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
Print verbose usage to stderr.
processWorkflowEventQueue() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Processes all events that were recently added to the queue.
processWorkflowEventQueue() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Processes all events that were recently added to the queue.
properties - Variable in class de.unihalle.informatik.Alida.operator.ALDData
Properties of the data object
properties - Variable in class de.unihalle.informatik.Alida.operator.ALDDataPort
The properties of the underlying MTBData at the time of creation of this Dataport
properties - Variable in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
The properties retrieved from the data as it passed the port into or out of the operator.
properties - Variable in class de.unihalle.informatik.Alida.operator.ALDOutputPort
Hash to hold properties copied upon return from runOp()
providedClasses() - Method in interface de.unihalle.informatik.Alida.batch.provider.input.ALDBatchInputIterator
Interface method to announce all classes handled by this provider.
providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
Interface method to announce class for which IO is provided for field is ignored.
providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
Interface method to announce class for which IO is provided for field is ignored.
providedClasses() - Method in interface de.unihalle.informatik.Alida.batch.provider.output.ALDBatchOutputSummarizer
Interface method to announce all classes handled by this provider.
providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing
Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeDataSwing
Interface method to announce class for which IO is provided for field is ignored.
providedClasses() - Method in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter
Announce all classes pairs which the converter can handle.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
 
providedClasses() - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIO
Interface method to announce all classes handled by this provider.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
Interface method to announce class for which IO is provided for
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
Interface method to announce class for which IO is provided for.
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDClassDataIOXmlbeans
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
 
providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
 
providedClasses() - Method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans
Interface method to announce class for which IO is provided for
providedClasses() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
Interface method to announce class for which IO is provided for
providedClassesMethodName - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
Name of the method which returns all classes supported by a DataIO provider class.
providedInputClassesMethodName - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
Name of the method which returns all classes supported.
providedOutputClassesMethodName - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
Name of the method which returns all classes supported.
providerAvailable(Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
Check if a provider has registered for the given class.
providerAvailable(Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
Check if a provider has registered for the given class.
providerInstances - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
Hashmap with global version provider objects.
ProviderInteractionLevel() - Constructor for enum de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing.ProviderInteractionLevel
 
ProviderInteractionLevel() - Constructor for enum de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing.ProviderInteractionLevel
 
ProviderInteractionLevel() - Constructor for enum de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing.ProviderInteractionLevel
 
providesMethodName - Static variable in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter
Name of the method which returns all source classes supported.
provInterLevel - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
Interaction level the providers should obey.
provInterLevel - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
Interaction level the providers should obey.
provInterLevel - Variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
Interaction level the providers should obey.
put(Object, Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Maps the specified key to the specified value in this table.

Q

quit() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
Terminates Grappa after some clean-ups.
quit() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Closes the main window after cleaning up.
quit() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Does clean-up on termination, i.e. closes all open windows.
quit() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
Cleans-up on termination, e.g. closes all windows.
quit() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Clean-up on termination.
quit() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
 
quit() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Does clean-up on termination, i.e. closes all open windows.

R

readArray1D(Class<?>, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
Parses a string into a 1D-array.
readArray2D(Class<?>, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
Parses a string into a 2D-array.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
Reads data of given class from a specified source.
readData(Field, Class<?>, ALDSwingComponent) - Method in interface de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputIteratorSwing
Interface method for getting parameter values via a GUI element.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
 
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
 
readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
Reads data of given class from a specified source.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
Reads data of given class from a specified source.
readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
Reads data of given class from a specified source.
readData(Field, Class<?>, String) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOCmdline
Interface for reading data from the given source.
readData(Field, Class<?>, ALDSwingComponent) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing
Interface method for getting parameter values via a GUI element.
readData(Field, Class<?>, ALDXMLObjectType) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOXmlbeans
Interface for reading data from the given source.
readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
 
readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
Read an object using valueString.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigButton
Gets the data from the configuration window.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing.CollectionConfigWindow
Extracts current collection data.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
 
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
 
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
Returns the contents of the text field.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
 
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
Gets the data from the configuration window.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Read data from graphical component.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
 
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Gets the data from the configuration window.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Read parameter value from graphical user interface.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
 
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
 
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
Read operator parameter values.
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel.AbstrOpClassPanel
Function to read parameter values from GUI.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorHierarchyConfigPanel
 
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
 
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing.ParametrizedClassPanel
Function to read parameter values from GUI.
readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
 
readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
Extracts current parametrized class configuration.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDClassDataIOXmlbeans
 
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
Returns a collection instantiated from aldXmlObject.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
 
readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
 
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
Method to parse native data from a string.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
Returns an object instantiated from aldXmlObject.
readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
Check if the class of the opject represented in aldXmlObject is compatible with the requested field or cl.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDParametrizedClassDataIOXmlbeans
Xmlbeans provider for parametrized classes and ALDOperators.
readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
 
ReadExperimentalData1D - Class in de.unihalle.informatik.Alida.demo
Operator to read ExperimentalData1D from a file.
ReadExperimentalData1D() - Constructor for class de.unihalle.informatik.Alida.demo.ReadExperimentalData1D
Default constructor.
readGUIParameterValues() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
Retrieve parameter values from GUI and configure operator accordingly.
readHistory(Object, String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
Reads and set the history graph of the given object from file.
readHistory(Object, String) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
Read and set the processing history from file.
readParameter(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Get value of given parameter from the GUI element.
readParameterValues(int, boolean) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
Read all IN and INOUT parameters specified on the command line.
readResolve() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Init function for deserialized objects.
readResolve() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Init function for deserialized objects.
readXml(String, Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
Read Object from a file using xmlbeans providers
readXml(File, Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
Read Object from a file using xmlbeans providers
recordModification(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Force a memory synchronization that will cause all readers to see table.
redirectSource(ALDWorkflowEdgeID, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Call redirectSource with with the argument allowDataConversion = false.
redirectSource(ALDWorkflowEdgeID, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Redirect the source of an edge.
redirectSource(ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Redirect the source of this edge
redirectTarget(ALDWorkflowEdgeID, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Calls redirectTarget with the argument allowDataConversion = false The same restrictions as for createEdge apply.
redirectTarget(ALDWorkflowEdgeID, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Redirect the target of an edge.
redirectTarget(ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
Redirect the target of this node.
redirectWorkflowEdge(mxCell, ALDWorkflowEdgeID, ALDWorkflowNodeID, ALDWorkflowNodeID, ALDGrappaNodePortInfo, ALDGrappaNodePortInfo) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Redirects the workflow edge.
referenceFrame - Variable in class de.unihalle.informatik.Alida.gui.OnlineHelpMissingHelpListener
Top level frame within which the help is to be used.
refID - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
Reference ID in workflow, required for loading from file.
refinedExtrema - Variable in class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
Refined positions of the extrema detected in smoothed data
RefineLocalExtrema1D - Class in de.unihalle.informatik.Alida.demo
Refine extrema extremaSmoothedData found in smoothed data using extrema extrema of the un-smoothed.
RefineLocalExtrema1D() - Constructor for class de.unihalle.informatik.Alida.demo.RefineLocalExtrema1D
Default constructor.
reformatInfoString(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
Reformats an info message to multiple lines if it contains newlines.
refQueue - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Queue for managing references to deleted objects.
register(Object) - Static method in class de.unihalle.informatik.Alida.operator.ALDPortHash
Adds the object's port to the hash.
register(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
Register the object in the hash.
register(ALDOpNode, ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Register an opNode as child to its parents if not already found directly or indirectly before.
register(ALDOpNode, ALDDataPort) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Register the dataport as directly included in opNode.
registerGUIElement(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
Adds a graphical component for the given parameter to the GUI.
rehash() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Rehashes the contents of this map into a new table with a larger capacity.
reinitializeParameterDescriptors() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Deprecated.
releaseVersion - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
Release version or tag information.
relocateNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Relocate the node to this workflow.
relocateNodes(Collection<ALDWorkflowNodeID>, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Relocate the nodes nodeIds and all edges of the sub graph induced by these nodes to this workflow.
remove() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
 
remove() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
 
remove(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Removes the key (and its corresponding value) from the table.
removeALDConfigurationEventListener(ALDConfigurationEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
 
removeALDConfigurationEventListener(ALDConfigurationEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventReporter
Removes a listener from this reporter.
removeALDControlEventListener(ALDControlEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
 
removeALDControlEventListener(ALDControlEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventReporter
Removes a listener from this reporter.
removeALDOpParameterUpdateEventListener(ALDOpParameterUpdateEventListener) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
Removes a listener from this reporter.
removeALDOpParameterUpdateEventListener(ALDOpParameterUpdateEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDOpParameterUpdateEventReporter
Removes a listener from this reporter.
removeALDWorkflowClassEventListener(ALDWorkflowEventListener) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Remove a listener for events thrown by the class ALDWorkflow (not an instance).
removeALDWorkflowEventListener(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
 
removeALDWorkflowEventListener(ALDWorkflowEventListener) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventReporter
Removes a listener from this reporter.
removeEdge(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Remove an edge from the workflow.
removeExtension(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
Removes preceding path elements and extension from filename, if any.
removeGraphId(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
Remove the graphIP including idSeparator at the beginning of an id
removeLeadingDirectories(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
Remove all leading pathname components from a filename.
removeNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Remove a node with all incoming and outgoing edges from the workflow.
removeOperatorExecutionProgressEventListener(ALDOperatorExecutionProgressEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Removes a listener from this reporter.
removeParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
Remove the descriptor associated with name.
removeValueChangeEventListener(ALDSwingValueChangeListener) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
Removes a listener from this reporter.
removeWeakKeys() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
Cleans-up the hashmap when called.
removeWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Removes the currently active workflow.
removeWorkflowEdge(mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Removes the specified edge from the workflow.
removeWorkflowNode(mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Removes the specified cell from the graph.
renameDataIds(DataType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
 
renameEdgeIds(EdgeType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
 
renameGraphIds(GraphType, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Rename all GraphIds of nodes, edges, data, etc with a new graphID.
renameIds(GraphType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Traverse the graph, find all graphIDs and do the renaming
renameNodeIds(NodeType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
Traverse the graph, find all graphIDs and actually rename.
renameTextField - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
renameWin - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
renameWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Rename the currently active workflow.
renameWorkflow(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
 
representsDirectory() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
Request type of input.
requestedClass - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing.ALDBatchIteratorNativeArray1D
Class of elements in array.
requestedClass - Variable in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing.ALDBatchIteratorNativeArray1D
Class of elements in array.
required - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
Flag to indicate if parameter is required.
resetButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigPanel
Button to reset array.
resetButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigPanel
Button to reset array.
resetButton - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigPanel
Button to reset operator to null.
resetDisconnectedInput - Variable in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
If true, an input parameter is reset (currently set to null) if is is disconnected (by removing or redirecting an edge) from its source.
resetParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
Reset the parameter parameterName in the operator associated to this node.
resizeTableEntries(int) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing.ArrayConfigWindow
Method to resize the reference entry list.
resizeTableEntries(int, int) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing.ArrayConfigWindow
Method to resize the reference entry list.
restoreConfigWins() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Instantiates for each node in the current workflow a configuration window.
restoreIDs() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Restore maps of Alida workflow IDs and corresponding graph cells.
result - Variable in class de.unihalle.informatik.Alida.demo.ALDDynamicOp
 
resultDataVec - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
List of corresponding result data objects.
resultDisplayButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Result display button.
resultFrame - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Frame showing operator execution results.
resumeWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 
returnElapsedTime - Variable in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
Supplemental to request elapsed time to be returned
revFile - Static variable in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
Name of revision file.
run() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow.ExecuteThread
 
run() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEventManager
 
runButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
Run button.
runFromNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the given node and all descendants of the given node.
runFromNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the given node and all descendants of the given node.
runFromNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the given node and all descendants of the given node.
runIt() - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
This method does the complete work to scan arguments, read and write parameters and runOp the operator.
runIt() - Method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
This method does the complete work to scan arguments, read and write parameters and runOp the operator.
runNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the given node and all its ancestors.
runNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the given node and all its ancestors.
runNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the given node and all its ancestors.
runOp() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
A legal method to invoke the operator and handles everything necessary to protocol the processing history.
runOp(boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
A legal method to invoke the operator and handles everything necessary to protocol the processing history.
runOp(ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
A legal method to invoke the operator and handles everything necessary to protocol the processing history.
runWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
Run the currently active workflow.
runWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Executes the complete workflow, i.e. all nodes currently present.
runWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
Executes the workflow.
runWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the complete workflow.
runWorkflow(boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the complete workflow.
runWorkflow(boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
Run the complete workflow.
runWorkflowFromNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
Executes the workflow from the specified node to the end.
runWorkflowInBatchMode() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
 
runWorkflowNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.grappa.