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A

a() - Method in class net.imagej.axis.Variable1Axis
 
A(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds
The partial sum A from C.
about() - Method in class net.imagej.app.ImageJApp
 
about() - Method in class net.imagej.legacy.LegacyImageJApp
 
AboutImageJ - Class in net.imagej.app
Displays information and credits about the ImageJ software.
AboutImageJ() - Constructor for class net.imagej.app.AboutImageJ
 
abs(double) - Method in class net.imagej.ops.math.MathNamespace
 
abs(float) - Method in class net.imagej.ops.math.MathNamespace
 
abs(int) - Method in class net.imagej.ops.math.MathNamespace
 
abs(long) - Method in class net.imagej.ops.math.MathNamespace
 
abs(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Abs() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Abs
 
abs() - Method in class net.imagej.types.PreciseFixedFloatType
 
AbsDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by applying the absolute value function to an input Dataset.
AbsDataValues() - Constructor for class net.imagej.plugins.commands.assign.AbsDataValues
 
AbstractAnnotatedSpace<A extends Axis> - Class in net.imagej.space
Abstract base class for AnnotatedSpace implementations.
AbstractAnnotatedSpace(int) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
 
AbstractAnnotatedSpace(A...) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
 
AbstractAnnotatedSpace(List<A>) - Constructor for class net.imagej.space.AbstractAnnotatedSpace
 
AbstractApplyThresholdImg<T> - Class in net.imagej.ops.threshold
Abstract superclass of ApplyThresholdIterable implementations that operate on Img objects.
AbstractApplyThresholdImg() - Constructor for class net.imagej.ops.threshold.AbstractApplyThresholdImg
 
AbstractApplyThresholdIterable<T,I extends Iterable<T>,O extends Iterable<BitType>> - Class in net.imagej.ops.threshold
Abstract superclass of ApplyThresholdIterable implementations.
AbstractApplyThresholdIterable() - Constructor for class net.imagej.ops.threshold.AbstractApplyThresholdIterable
 
AbstractAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale
Abstract base class for AutoscaleMethod plugins.
AbstractAutoscaleMethod() - Constructor for class net.imagej.autoscale.AbstractAutoscaleMethod
 
AbstractBinaryCommand - Class in net.imagej.plugins.commands.binary
Abstract super class for binarization commands like Create Mask and Make Binary.
AbstractBinaryCommand() - Constructor for class net.imagej.plugins.commands.binary.AbstractBinaryCommand
 
AbstractBinaryComputerOp<I1,I2,O> - Class in net.imagej.ops.special.computer
Abstract superclass for BinaryComputerOp implementations.
AbstractBinaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractBinaryComputerOp
 
AbstractBinaryFunctionOp<I1,I2,O> - Class in net.imagej.ops.special.function
Abstract superclass for BinaryFunctionOp implementations.
AbstractBinaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractBinaryFunctionOp
 
AbstractBinaryHybridC<I1,I2,O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCF and BinaryHybridCI1 implementations.
AbstractBinaryHybridC() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridC
 
AbstractBinaryHybridCF<I1,I2,O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCF implementations.
AbstractBinaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCF
 
AbstractBinaryHybridCFI<I,O extends I> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCFI implementations.
AbstractBinaryHybridCFI() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCFI
 
AbstractBinaryHybridCFI1<I1,I2,O extends I1> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCFI1 implementations.
AbstractBinaryHybridCFI1() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCFI1
 
AbstractBinaryHybridCI<I,O extends I> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCI implementations.
AbstractBinaryHybridCI() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCI
 
AbstractBinaryHybridCI1<I1,I2,O extends I1> - Class in net.imagej.ops.special.hybrid
Abstract superclass for BinaryHybridCI1 implementations.
AbstractBinaryHybridCI1() - Constructor for class net.imagej.ops.special.hybrid.AbstractBinaryHybridCI1
 
AbstractBinaryInplace1Op<A,I> - Class in net.imagej.ops.special.inplace
Abstract superclass for BinaryInplace1OnlyOp implementations.
AbstractBinaryInplace1Op() - Constructor for class net.imagej.ops.special.inplace.AbstractBinaryInplace1Op
 
AbstractBinaryInplaceOp<A> - Class in net.imagej.ops.special.inplace
Abstract superclass for BinaryInplaceOnlyOp implementations.
AbstractBinaryInplaceOp() - Constructor for class net.imagej.ops.special.inplace.AbstractBinaryInplaceOp
 
AbstractBinaryOp<I1,I2,O> - Class in net.imagej.ops.special
Abstract base class for BinaryOp implementations.
AbstractBinaryOp() - Constructor for class net.imagej.ops.special.AbstractBinaryOp
 
AbstractBoundarySizeConvexHull<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.BoundarySizeConvexHull.
AbstractBoundarySizeConvexHull(Class<I>) - Constructor for class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
 
AbstractBoxivity<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.Boxivity.
AbstractBoxivity(Class<I>) - Constructor for class net.imagej.ops.geom.AbstractBoxivity
 
AbstractCalibratedAxis - Class in net.imagej.axis
Abstract base class for CalibratedAxis.
AbstractCalibratedAxis(AxisType) - Constructor for class net.imagej.axis.AbstractCalibratedAxis
 
AbstractCalibratedAxis(AxisType, String) - Constructor for class net.imagej.axis.AbstractCalibratedAxis
 
AbstractCalibratedRealInterval<A extends CalibratedAxis> - Class in net.imagej.interval
Abstract base class for CalibratedRealInterval.
AbstractCalibratedRealInterval(RealInterval) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(RealInterval, A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(RealInterval, List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[]) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], double[]) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], double[], A...) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedRealInterval(double[], double[], List<A>) - Constructor for class net.imagej.interval.AbstractCalibratedRealInterval
 
AbstractCalibratedSpace<A extends CalibratedAxis> - Class in net.imagej.space
Abstract base class for CalibratedSpace.
AbstractCalibratedSpace(int) - Constructor for class net.imagej.space.AbstractCalibratedSpace
 
AbstractCalibratedSpace(A...) - Constructor for class net.imagej.space.AbstractCalibratedSpace
 
AbstractCalibratedSpace(List<A>) - Constructor for class net.imagej.space.AbstractCalibratedSpace
 
AbstractCenterAwareComputerOp<I,O> - Class in net.imagej.ops.map.neighborhood
Abstract superclass for CenterAwareComputerOp implementations.
AbstractCenterAwareComputerOp() - Constructor for class net.imagej.ops.map.neighborhood.AbstractCenterAwareComputerOp
 
AbstractCenterAwareNeighborhoodBasedFilter<I,O> - Class in net.imagej.ops.filter
 
AbstractCenterAwareNeighborhoodBasedFilter() - Constructor for class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
 
AbstractChunker - Class in net.imagej.ops.thread.chunker
Abstract ChunkerOp.
AbstractChunker() - Constructor for class net.imagej.ops.thread.chunker.AbstractChunker
 
AbstractColorTool - Class in net.imagej.plugins.tools
Abstract superclass for the BgColorTool and FgColorTool classes.
AbstractColorTool() - Constructor for class net.imagej.plugins.tools.AbstractColorTool
 
AbstractComputeThresholdHistogram<T extends RealType<T>> - Class in net.imagej.ops.threshold
Abstract superclass of ComputeThresholdHistogram implementations.
AbstractComputeThresholdHistogram() - Constructor for class net.imagej.ops.threshold.AbstractComputeThresholdHistogram
 
AbstractConvexity<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.Convexity.
AbstractConvexity() - Constructor for class net.imagej.ops.geom.AbstractConvexity
 
AbstractData - Class in net.imagej
Base implementation of Data.
AbstractData(RealInterval) - Constructor for class net.imagej.AbstractData
Default constructor for use by serialization code.
AbstractData(Context, RealInterval) - Constructor for class net.imagej.AbstractData
TODO
AbstractDataView - Class in net.imagej.display
Abstract superclass for DataViews.
AbstractDataView() - Constructor for class net.imagej.display.AbstractDataView
 
AbstractDisplayCreator - Class in net.imagej.legacy.translate
Abstract superclass for DisplayCreator implementations.
AbstractDisplayCreator() - Constructor for class net.imagej.legacy.translate.AbstractDisplayCreator
 
AbstractFFTFilterC<I,O,K,C> - Class in net.imagej.ops.filter
Abstract class for FFT based filter computers
AbstractFFTFilterC() - Constructor for class net.imagej.ops.filter.AbstractFFTFilterC
 
AbstractFFTFilterF<I extends RealType<I>,O extends RealType<O> & NativeType<O>,K extends RealType<K>,C extends ComplexType<C> & NativeType<C>> - Class in net.imagej.ops.filter
Abstract class for binary filter that performs operations using an image and kernel in the frequency domain.
AbstractFFTFilterF() - Constructor for class net.imagej.ops.filter.AbstractFFTFilterF
 
AbstractHaralickFeature<T extends RealType<T>> - Class in net.imagej.ops.features.haralick
Abstract class for HaralickFeatures.
AbstractHaralickFeature() - Constructor for class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
AbstractHelp - Class in net.imagej.ops.help
Base class for help operations.
AbstractHelp() - Constructor for class net.imagej.ops.help.AbstractHelp
 
AbstractIdentity<T> - Class in net.imagej.ops.identity
Abstract superclass of IdentityOp implementations.
AbstractIdentity() - Constructor for class net.imagej.ops.identity.AbstractIdentity
 
AbstractImageDisplayViewer - Class in net.imagej.ui.viewer.image
The AbstractImageDisplayViewer implements the UI-independent elements of an image display viewer.
AbstractImageDisplayViewer() - Constructor for class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
AbstractImageDisplayViewer.ZoomScaleOption - Enum in net.imagej.ui.viewer.image
 
AbstractImageMomentOp<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.imagemoments
Abstract ImageMomentOp.
AbstractImageMomentOp() - Constructor for class net.imagej.ops.imagemoments.AbstractImageMomentOp
 
AbstractImagePlusCreator - Class in net.imagej.legacy.translate
Abstract superclass for ImagePlusCreator implementations.
AbstractImagePlusCreator() - Constructor for class net.imagej.legacy.translate.AbstractImagePlusCreator
 
AbstractImagePlusDisplayViewer - Class in net.imagej.legacy.display
Abstract DisplayViewer for displaying ImagePluses.
AbstractImagePlusDisplayViewer() - Constructor for class net.imagej.legacy.display.AbstractImagePlusDisplayViewer
 
AbstractIntegralImg<I extends RealType<I>> - Class in net.imagej.ops.image.integral
Abstract base class for n-dimensional integral images.
AbstractIntegralImg() - Constructor for class net.imagej.ops.image.integral.AbstractIntegralImg
 
AbstractIterativeFFTFilterC<I extends RealType<I>,O extends RealType<O>,K extends RealType<K>,C extends ComplexType<C>> - Class in net.imagej.ops.filter
Abstract class for iterative FFT filters that perform on RAI.
AbstractIterativeFFTFilterC() - Constructor for class net.imagej.ops.filter.AbstractIterativeFFTFilterC
 
AbstractJHotDrawAdapter<O extends Overlay,F extends Figure> - Class in net.imagej.ui.swing.overlay
An abstract class that gives default behavior for the JHotDrawAdapter interface.
AbstractJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.AbstractJHotDrawAdapter
 
AbstractLBP2DFeature<I extends RealType<I>> - Class in net.imagej.ops.features.lbp2d
Abstract class for 2d local binary pattern feature
AbstractLBP2DFeature() - Constructor for class net.imagej.ops.features.lbp2d.AbstractLBP2DFeature
 
AbstractLegacyAdapter - Class in net.imagej.legacy.ui
Abstract LegacyAdapter implementation.
AbstractLegacyAdapter(LegacyService) - Constructor for class net.imagej.legacy.ui.AbstractLegacyAdapter
 
AbstractLinearSpace<A extends LinearAxis> - Class in net.imagej.space
Abstract base class for LinearSpace.
AbstractLinearSpace(int) - Constructor for class net.imagej.space.AbstractLinearSpace
 
AbstractLinearSpace(A...) - Constructor for class net.imagej.space.AbstractLinearSpace
 
AbstractLinearSpace(List<A>) - Constructor for class net.imagej.space.AbstractLinearSpace
 
AbstractLineTool - Class in net.imagej.plugins.tools
Abstract class that is used by PencilTool, PaintBrushTool, and their erase modes to draw lines into a dataset using fg/bg values.
AbstractLineTool() - Constructor for class net.imagej.plugins.tools.AbstractLineTool
 
AbstractMapBinaryComputer<EI1,EI2,EO,PI1,PI2,PO> - Class in net.imagej.ops.map
Abstract base class for MapBinaryComputer implementations.
AbstractMapBinaryComputer() - Constructor for class net.imagej.ops.map.AbstractMapBinaryComputer
 
AbstractMapBinaryInplace<EI,EO extends EI,PA> - Class in net.imagej.ops.map
Abstract base class for MapBinaryInplace implementations.
AbstractMapBinaryInplace() - Constructor for class net.imagej.ops.map.AbstractMapBinaryInplace
 
AbstractMapBinaryInplace1<EI1,EI2,EO extends EI1,PA,PI> - Class in net.imagej.ops.map
Abstract base class for MapBinaryInplace1 implementations.
AbstractMapBinaryInplace1() - Constructor for class net.imagej.ops.map.AbstractMapBinaryInplace1
 
AbstractMapComputer<EI,EO,PI,PO> - Class in net.imagej.ops.map
Abstract base class for MapUnaryComputer implementations.
AbstractMapComputer() - Constructor for class net.imagej.ops.map.AbstractMapComputer
 
AbstractMapInplace<EI,EO extends EI,PA> - Class in net.imagej.ops.map
Abstract base class for MapInplace implementations.
AbstractMapInplace() - Constructor for class net.imagej.ops.map.AbstractMapInplace
 
AbstractMapIterableInplace<EI,EO extends EI,PA extends Iterable<EI>> - Class in net.imagej.ops.map
Abstract base class for MapInplace implementations that operate on Iterables.
AbstractMapIterableInplace() - Constructor for class net.imagej.ops.map.AbstractMapIterableInplace
 
AbstractMapNeighborhood<EI,EO,PI,PO,OP extends Op> - Class in net.imagej.ops.map.neighborhood
Abstract base class for MapNeighborhood implementations.
AbstractMapNeighborhood() - Constructor for class net.imagej.ops.map.neighborhood.AbstractMapNeighborhood
 
AbstractMapNullaryComputer<EO,PO> - Class in net.imagej.ops.map
Abstract base class for MapNullaryComputer implementations.
AbstractMapNullaryComputer() - Constructor for class net.imagej.ops.map.AbstractMapNullaryComputer
 
AbstractMapView<EI,EO,PI,PO> - Class in net.imagej.ops.map
Abstract base class for MapView implementations.
AbstractMapView() - Constructor for class net.imagej.ops.map.AbstractMapView
 
AbstractMinMaxMethod<T extends Type<T> & Comparable<T>> - Class in net.imagej.minmax
Abstract superclass for MinMaxMethod implementations.
AbstractMinMaxMethod() - Constructor for class net.imagej.minmax.AbstractMinMaxMethod
 
AbstractMorphOpsCommand - Class in net.imagej.plugins.commands.binary
Abstract super class for commands that modify binary images in place.
AbstractMorphOpsCommand() - Constructor for class net.imagej.plugins.commands.binary.AbstractMorphOpsCommand
 
AbstractNamespace - Class in net.imagej.ops
Abstract base class for Namespace implementations.
AbstractNamespace() - Constructor for class net.imagej.ops.AbstractNamespace
 
AbstractNeighborhoodBasedFilter<I,O> - Class in net.imagej.ops.filter
 
AbstractNeighborhoodBasedFilter() - Constructor for class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
 
AbstractNoiseReducerPlugin<U extends RealType<U>> - Class in net.imagej.plugins.commands.assign.noisereduce
Abstract super class for noise reduction plugin implementations.
AbstractNoiseReducerPlugin() - Constructor for class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
AbstractNoiseReducerPlugin.NeighborhoodType - Enum in net.imagej.plugins.commands.assign.noisereduce
 
AbstractNullaryComputerOp<O> - Class in net.imagej.ops.special.computer
Abstract superclass for BinaryComputerOp implementations.
AbstractNullaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractNullaryComputerOp
 
AbstractNullaryFunctionOp<O> - Class in net.imagej.ops.special.function
Abstract superclass for NullaryFunctionOp implementations.
AbstractNullaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractNullaryFunctionOp
 
AbstractNullaryHybridCF<O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for NullaryHybridCF implementations.
AbstractNullaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractNullaryHybridCF
 
AbstractNullaryOp<O> - Class in net.imagej.ops.special
Abstract base class for NullaryOp implementations.
AbstractNullaryOp() - Constructor for class net.imagej.ops.special.AbstractNullaryOp
 
AbstractOp - Class in net.imagej.ops
Abstract superclass for Op implementations.
AbstractOp() - Constructor for class net.imagej.ops.AbstractOp
 
AbstractOverlay - Class in net.imagej.overlay
Abstract superclass of Overlay implementations.
AbstractOverlay(RealInterval) - Constructor for class net.imagej.overlay.AbstractOverlay
 
AbstractOverlay(Context, RealInterval) - Constructor for class net.imagej.overlay.AbstractOverlay
 
AbstractOverlayProperties - Class in net.imagej.plugins.commands.overlay
A plugin to change the properties (e.g., line color, line width) of a given set of overlays.
AbstractOverlayProperties() - Constructor for class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
AbstractPlanarCommand - Class in net.imagej.command
Abstract superclass for commands that can operate on a single plane.
AbstractPlanarCommand() - Constructor for class net.imagej.command.AbstractPlanarCommand
 
AbstractProgressable - Class in net.imagej.updater.util
Abstract superclass for Progressable implementations.
AbstractProgressable() - Constructor for class net.imagej.updater.util.AbstractProgressable
 
AbstractROIOverlay<R extends RegionOfInterest> - Class in net.imagej.overlay
An overlay that has an associated region of interest
AbstractROIOverlay(R) - Constructor for class net.imagej.overlay.AbstractROIOverlay
 
AbstractROIOverlay(Context, R) - Constructor for class net.imagej.overlay.AbstractROIOverlay
 
AbstractShadows - Class in net.imagej.plugins.commands.correlate
Abstract superclass for Shadows plugins.
AbstractSizeConvexHull<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.SizeConvexHull .
AbstractSizeConvexHull(Class<I>) - Constructor for class net.imagej.ops.geom.AbstractSizeConvexHull
 
AbstractSolidity<I> - Class in net.imagej.ops.geom
Generic implementation of Ops.Geometric.Solidity.
AbstractSolidity() - Constructor for class net.imagej.ops.geom.AbstractSolidity
 
AbstractStatsOp<I,O extends RealType<O>> - Class in net.imagej.ops.stats
Abstract Statistics Op.
AbstractStatsOp() - Constructor for class net.imagej.ops.stats.AbstractStatsOp
 
AbstractSwingImageDisplayViewer - Class in net.imagej.ui.swing.viewer.image
A Swing image display viewer, which displays 2D planes in grayscale or composite color.
AbstractSwingImageDisplayViewer() - Constructor for class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
AbstractTable<C extends Column<? extends T>,T> - Class in net.imagej.table
Abstract superclass for Table implementations.
AbstractTable() - Constructor for class net.imagej.table.AbstractTable
Creates an empty table.
AbstractTable(int, int) - Constructor for class net.imagej.table.AbstractTable
Creates a table with the given column and row dimensions.
AbstractTableDisplayViewer - Class in net.imagej.ui.viewer.table
Implements the UI-independent elements of a Table viewer.
AbstractTableDisplayViewer() - Constructor for class net.imagej.ui.viewer.table.AbstractTableDisplayViewer
 
AbstractTamuraFeature<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.features.tamura2d
Abstract tamura feature.
AbstractTamuraFeature() - Constructor for class net.imagej.ops.features.tamura2d.AbstractTamuraFeature
 
AbstractTypedSpace<A extends TypedAxis> - Class in net.imagej.space
Abstract base class for TypedSpace.
AbstractTypedSpace(int) - Constructor for class net.imagej.space.AbstractTypedSpace
 
AbstractTypedSpace(A...) - Constructor for class net.imagej.space.AbstractTypedSpace
 
AbstractTypedSpace(List<A>) - Constructor for class net.imagej.space.AbstractTypedSpace
 
AbstractUnaryComputerOp<I,O> - Class in net.imagej.ops.special.computer
Abstract superclass for UnaryComputerOp implementations.
AbstractUnaryComputerOp() - Constructor for class net.imagej.ops.special.computer.AbstractUnaryComputerOp
 
AbstractUnaryFunctionOp<I,O> - Class in net.imagej.ops.special.function
Abstract superclass for UnaryFunctionOp implementations.
AbstractUnaryFunctionOp() - Constructor for class net.imagej.ops.special.function.AbstractUnaryFunctionOp
 
AbstractUnaryHybridC<I,O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for UnaryHybridCF and UnaryHybridCI implementations.
AbstractUnaryHybridC() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridC
 
AbstractUnaryHybridCF<I,O> - Class in net.imagej.ops.special.hybrid
Abstract superclass for UnaryHybridCF implementations.
AbstractUnaryHybridCF() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCF
 
AbstractUnaryHybridCFI<I,O extends I> - Class in net.imagej.ops.special.hybrid
Abstract superclass for UnaryHybridCFI implementations.
AbstractUnaryHybridCFI() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCFI
 
AbstractUnaryHybridCI<I,O extends I> - Class in net.imagej.ops.special.hybrid
Abstract superclass for UnaryHybridCI implementations.
AbstractUnaryHybridCI() - Constructor for class net.imagej.ops.special.hybrid.AbstractUnaryHybridCI
 
AbstractUnaryInplaceOp<A> - Class in net.imagej.ops.special.inplace
Abstract superclass for UnaryInplaceOnlyOp implementations.
AbstractUnaryInplaceOp() - Constructor for class net.imagej.ops.special.inplace.AbstractUnaryInplaceOp
 
AbstractUnaryOp<I,O> - Class in net.imagej.ops.special
Abstract base class for UnaryOp implementations.
AbstractUnaryOp() - Constructor for class net.imagej.ops.special.AbstractUnaryOp
 
AbstractUploader - Class in net.imagej.updater
Abstract base class for ImageJ upload mechanisms.
AbstractUploader() - Constructor for class net.imagej.updater.AbstractUploader
 
AbstractVertexInterpolator - Class in net.imagej.ops.geom.geom3d.mesh
AbstractVertexInterpolator() - Constructor for class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
AbstractZernikeFeature<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.features.zernike
Abstract Zernike Op.
AbstractZernikeFeature() - Constructor for class net.imagej.ops.features.zernike.AbstractZernikeFeature
 
accelerate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
accelerate(RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.DeconvolveNamespace
 
AcceleratorHandler - Class in net.imagej.plugins.tools
Handles keyboard accelerator combinations that launch modules.
AcceleratorHandler() - Constructor for class net.imagej.plugins.tools.AcceleratorHandler
 
access - Variable in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection.Traverser
 
accessTextFields() - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
accessTextFields() - Method in class net.imagej.patcher.HeadlessGenericDialog
 
ACTION_ATTRIBUTE - Static variable in class net.imagej.ui.swing.updater.DiffView
 
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.overlay.SwingOverlayManager
 
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
actionPerformed(ActionEvent) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
actionResolution(String, FileObject, FileObject.Action...) - Method in class net.imagej.updater.Conflicts
 
actionResolution(String, Iterable<FileObject>, FileObject.Action...) - Method in class net.imagej.updater.Conflicts
 
actionSpecified() - Method in class net.imagej.updater.FileObject
 
activate() - Method in class net.imagej.legacy.ui.LegacyApplicationFrame
 
activate(DrawingEditor) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
activateUpdateSite(UpdateSite) - Method in class net.imagej.ui.swing.updater.SitesDialog
 
activateUpdateSite(UpdateSite, Progress) - Method in class net.imagej.updater.FilesCollection
Activate the given update site.
ActiveChannelCollectionPreprocessor - Class in net.imagej.display.process
Assigns the active ChannelCollection when there is one single unresolved ChannelCollection parameter.
ActiveChannelCollectionPreprocessor() - Constructor for class net.imagej.display.process.ActiveChannelCollectionPreprocessor
 
ActiveDatasetPreprocessor - Class in net.imagej.display.process
Fills single, unresolved module inputs with the active active Dataset.
ActiveDatasetPreprocessor() - Constructor for class net.imagej.display.process.ActiveDatasetPreprocessor
 
ActiveDatasetViewPreprocessor - Class in net.imagej.display.process
Assigns the active DatasetView when there is one single unresolved DatasetView parameter.
ActiveDatasetViewPreprocessor() - Constructor for class net.imagej.display.process.ActiveDatasetViewPreprocessor
 
ActiveDataViewPreprocessor - Class in net.imagej.display.process
Assigns the active DataView when there is one single unresolved DataView parameter.
ActiveDataViewPreprocessor() - Constructor for class net.imagej.display.process.ActiveDataViewPreprocessor
 
ActiveImageDisplayPreprocessor - Class in net.imagej.display.process
Assigns the active ImageDisplay when there is one single unresolved ImageDisplay parameter.
ActiveImageDisplayPreprocessor() - Constructor for class net.imagej.display.process.ActiveImageDisplayPreprocessor
 
ActiveImagePlusPreprocessor - Class in net.imagej.legacy.plugin
TODO: this class can be removed once Dataset and ImagePlus conversion is done properly via wrapping.
ActiveImagePlusPreprocessor() - Constructor for class net.imagej.legacy.plugin.ActiveImagePlusPreprocessor
 
ActiveOverlayPreprocessor - Class in net.imagej.display.process
Assigns the Overlay of the active ImageDisplay when there is one single unresolved Overlay parameter.
ActiveOverlayPreprocessor() - Constructor for class net.imagej.display.process.ActiveOverlayPreprocessor
 
ActivePositionPreprocessor - Class in net.imagej.display.process
Assigns the Position of the active ImageDisplay when there is one single unresolved Position parameter.
ActivePositionPreprocessor() - Constructor for class net.imagej.display.process.ActivePositionPreprocessor
 
activeTool - Variable in class net.imagej.ui.swing.overlay.ToolDelegator
 
add(String) - Method in class net.imagej.display.DefaultWindowService
 
add(String) - Method in interface net.imagej.display.WindowService
Adds a path to the list of window files.
add(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
Adds the given object to the end of the column.
add(int, Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
add(Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
add(int, Column<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
add(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
Add() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.Add
 
Add() - Constructor for class net.imagej.ops.math.ConstantToIIOutputII.Add
 
Add() - Constructor for class net.imagej.ops.math.ConstantToIIOutputRAI.Add
 
Add() - Constructor for class net.imagej.ops.math.IIToIIOutputII.Add
 
Add() - Constructor for class net.imagej.ops.math.IIToRAIOutputII.Add
 
add(double, double) - Method in class net.imagej.ops.math.MathNamespace
 
add(float, float) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
add(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(IterableInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
add(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<N, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
add(PlanarImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
add(RandomAccessibleInterval<T>, IterableInterval<T>, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(T, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(T, T, T) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<B, ByteArray>, byte) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<DoubleType, DoubleArray>, double) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<FloatType, FloatArray>, float) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<I, IntArray>, int) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<LongType, LongArray>, long) - Method in class net.imagej.ops.math.MathNamespace
 
add(ArrayImg<S, ShortArray>, short) - Method in class net.imagej.ops.math.MathNamespace
 
Add() - Constructor for class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
add() - Method in class net.imagej.plugins.commands.debug.ButtonDemo
 
add(C) - Method in class net.imagej.table.AbstractTable
 
add(int, C) - Method in class net.imagej.table.AbstractTable
 
add(C) - Method in interface net.imagej.table.Table
Appends the specified column to the end of the table.
add(int, C) - Method in interface net.imagej.table.Table
Inserts the specified column at the specified position in the table.
add(BigComplex, BigComplex) - Method in class net.imagej.types.BigComplex
Set self to the result of addition between two BigComplex values.
add(BigComplex) - Method in class net.imagej.types.BigComplex
Adds another BigComplex value to self.
add(PreciseFixedComplexFloatType, PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
add(PreciseFixedComplexFloatType) - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
add(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
add(PreciseFixedFloatType, PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
add(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
add(BezierPath, BezierPath) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
add(FileObject) - Method in class net.imagej.updater.FilesCollection
 
add(FileObject, FileObject) - Method in class net.imagej.updater.FilesCollection.DependencyMap
 
addAccelerator(Component, JComponent, ActionListener, int, int) - Static method in class net.imagej.ui.swing.updater.SwingTools
Add a keyboard accelerator to a container.
addAliases(ScriptService) - Method in class net.imagej.legacy.IJ1Helper
Add name aliases for ImageJ1 classes to the ScriptService.
addAll(Collection<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
addAll(int, Collection<? extends Object>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
addAll(Collection<? extends Column<? extends Object>>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
addAll(int, Collection<? extends Column<? extends Object>>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
addAll(Collection<? extends C>) - Method in class net.imagej.table.AbstractTable
 
addAll(int, Collection<? extends C>) - Method in class net.imagej.table.AbstractTable
 
addAll(Collection<? extends C>) - Method in interface net.imagej.table.Table
Appends all of the columns in the specified collection to the end of the table, in the order that they are returned by the specified collection's iterator.
addAll(int, Collection<? extends C>) - Method in interface net.imagej.table.Table
Inserts all of the columns in the specified collection into this list at the specified position.
AddAndScale(RandomAccessibleInterval<T>, Img<T>, float) - Method in class net.imagej.ops.deconvolve.accelerate.VectorAccelerator
 
addAuthor(String) - Method in class net.imagej.updater.FileObject
 
AddAxis - Class in net.imagej.plugins.commands.restructure
Adds a new axis to an input Dataset.
AddAxis() - Constructor for class net.imagej.plugins.commands.restructure.AddAxis
 
addButton(String, ActionListener) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
AddByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddByte
 
AddByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddByte
 
AddByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddByte
 
addCategory(String) - Method in class net.imagej.updater.FileObject
 
addCheckbox(String, boolean) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addCheckbox(String, boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addCheckboxGroup(int, int, String[], boolean[]) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addCheckboxGroup(int, int, String[], boolean[], String[]) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addCheckboxGroup(int, int, String[], boolean[]) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addCheckboxGroup(int, int, String[], boolean[], String[]) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addChoice(String, String[], String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addChoice(String, String[], String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addClassAndInterfaces(Set<String>, Set<String>, String) - Method in class net.imagej.updater.util.DependencyAnalyzer
 
addClosed(ImagePlus) - Static method in class net.imagej.legacy.LegacyOutputTracker
Add an ImagePlus to the current closed list.
addConflict(String, String, boolean, List<File>) - Method in class net.imagej.updater.Checksummer
 
addCustomOption(String, Iterable<FileObject>) - Method in class net.imagej.ui.swing.updater.ViewOptions
 
addCustomViewOptions() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
AddData - Class in net.imagej.plugins.commands.restructure
Adds hyperplanes of data to an input Dataset along a user specified axis.
AddData() - Constructor for class net.imagej.plugins.commands.restructure.AddData
 
addDependency(FilesCollection, FileObject) - Method in class net.imagej.updater.FileObject
 
addDependency(String, File) - Method in class net.imagej.updater.FileObject
 
addDependency(String, long, boolean) - Method in class net.imagej.updater.FileObject
 
addDependency(Dependency) - Method in class net.imagej.updater.FileObject
 
addDialogListener(DialogListener) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addDialogListener(DialogListener) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addDimension(RandomAccessibleInterval<T>, long, long) - Method in class net.imagej.ops.transform.TransformNamespace
Create view which adds a dimension to the source RandomAccessibleInterval.
addDimension(RandomAccessible<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Create view which adds a dimension to the source RandomAccessible .
AddDimensionViewMinMax<T> - Class in net.imagej.ops.transform.addDimensionView
AddDimensionViewMinMax() - Constructor for class net.imagej.ops.transform.addDimensionView.AddDimensionViewMinMax
 
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddDouble
 
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddDouble
 
AddDouble() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddDouble
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
addEventDispatcher(AWTDropTargetEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class net.imagej.ui.swing.viewer.image.SwingImageDisplayPanel
 
addFace(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultMesh
Add a new facet.
addFaceInFront(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddFloat
 
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddFloat
 
AddFloat() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddFloat
 
addHelp(String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addHelp(String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addImage(ImagePlus) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
AddImage - Class in net.imagej.plugins.commands.overlay
This is a placeholder command for as yet unfinished Add Image command.
AddImage() - Constructor for class net.imagej.plugins.commands.overlay.AddImage
 
AddInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddInt
 
AddInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddInt
 
AddInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddInt
 
addItem(Object) - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
addItem(Object) - Method in class net.imagej.updater.FilesUploader.VerifyTimestamp
 
addItem(Object) - Method in class net.imagej.updater.util.AbstractProgressable
 
addItem(Object) - Method in interface net.imagej.updater.util.Progress
 
addItem(Object) - Method in class net.imagej.updater.util.StderrProgress
 
addLink(String) - Method in class net.imagej.updater.FileObject
 
AddLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddLong
 
AddLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddLong
 
AddLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddLong
 
addMenuItem(String, String) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Callback for ImageJ 1.x' menu parsing machinery.
addMenuItem(String, String) - Method in class net.imagej.patcher.LegacyHooks
Callback for ImageJ 1.x' menu parsing machinery.
addMenuItems() - Method in class net.imagej.legacy.IJ1Helper
Adds legacy-compatible scripts and commands to the ImageJ1 menu structure.
addMessage(String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addMessage(String, Font) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addMessage(String, Font, Color) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addMessage(String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addMessage(String, Font) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addMessage(String, Font, Color) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addNewSite - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
addNoise(I, O, double, double, double, Random) - Static method in class net.imagej.ops.filter.addNoise.AddNoiseRealType
 
addNoise(O, I, double, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
 
addNoise(O, I, double, double, double, long) - Method in class net.imagej.ops.filter.FilterNamespace
 
addNoise(T, double, double, double) - Method in class net.imagej.ops.filter.FilterNamespace
 
AddNoiseRealType<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.filter.addNoise
Sets the real component of an output real number to the addition of the real component of an input real number with an amount of Gaussian noise.
AddNoiseRealType() - Constructor for class net.imagej.ops.filter.addNoise.AddNoiseRealType
 
AddNoiseRealTypeCFI<T extends RealType<T>> - Class in net.imagej.ops.filter.addNoise
Adds Gaussian noise to a real number.
AddNoiseRealTypeCFI() - Constructor for class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
 
AddNoiseToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by applying a default amount of random noise to an input Dataset.
AddNoiseToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddNoiseToDataValues
 
addNumericField(String, double, int) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addNumericField(String, double, int, int, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addNumericField(String, double, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addNumericField(String, double, int, int, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addOrEditUploadSite(List<String>, boolean) - Method in class net.imagej.updater.CommandLine
 
addOrEditUploadSite(String, String, String, String, boolean) - Method in class net.imagej.updater.CommandLine
 
addOutput(ImagePlus) - Static method in class net.imagej.legacy.LegacyOutputTracker
Add an ImagePlus to the current output list.
addOutputListener(OutputListener) - Method in class net.imagej.legacy.LegacyConsoleService
 
addOverlay(int, Overlay) - Method in class net.imagej.display.OverlayInfoList
 
addOverlay(Overlay) - Method in class net.imagej.display.OverlayInfoList
 
addOverlayInfo(int, OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
 
addOverlayInfo(OverlayInfo) - Method in class net.imagej.display.OverlayInfoList
 
addOverlays(ImageDisplay, List<? extends Overlay>) - Method in class net.imagej.display.DefaultOverlayService
 
addOverlays(ImageDisplay, List<? extends Overlay>) - Method in interface net.imagej.display.OverlayService
Adds the list of Overlays to the given ImageDisplay.
addPanel(Panel) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addPanel(Panel, int, Insets) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addPanel(Panel) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addPanel(Panel, int, Insets) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addPersonalSite - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
addPlatform(String) - Method in class net.imagej.updater.FileObject
 
addPluginClasspath(ClassLoader) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Adds the class path of a given ClassLoader to the plugin class loader.
addPluginClasspath(File...) - Method in class imagej.patcher.LegacyEnvironment
Deprecated.
Adds extra elements to the class path of ImageJ 1.x' plugin class loader.
addPluginClasspath(File) - Method in class imagej.patcher.LegacyHooks
Deprecated.
 
addPluginClasspath(ClassLoader) - Method in class net.imagej.patcher.LegacyEnvironment
Adds the class path of a given ClassLoader to the plugin class loader.
addPluginClasspath(File...) - Method in class net.imagej.patcher.LegacyEnvironment
Adds extra elements to the class path of ImageJ 1.x' plugin class loader.
addPluginClasspath(File) - Method in class net.imagej.patcher.LegacyHooks
 
addPluginDirectory(File, String[]) - Method in class imagej.patcher.LegacyHooks
Deprecated.
Extension point to modify the order in which .jar files are added to the PluginClassLoader.
addPluginDirectory(File, String[]) - Method in class net.imagej.patcher.LegacyHooks
Extension point to modify the order in which .jar files are added to the PluginClassLoader.
addPoissonNoise(O, I) - Method in class net.imagej.ops.filter.FilterNamespace
 
addPoissonNoise(O, I, long) - Method in class net.imagej.ops.filter.FilterNamespace
 
addPoissonNoise(IterableInterval<O>, IterableInterval<I>) - Method in class net.imagej.ops.filter.FilterNamespace
 
AddPoissonNoiseMap<T extends ComplexType<T>> - Class in net.imagej.ops.filter.addPoissonNoise
 
AddPoissonNoiseMap() - Constructor for class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
 
AddPoissonNoiseRealType<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.filter.addPoissonNoise
Sets the real component of an output real number to a real number sampled from a Poisson distribution with lambda of the input real number.
AddPoissonNoiseRealType() - Constructor for class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
 
addPreviewCheckbox(PlugInFilterRunner) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addPreviewCheckbox(PlugInFilterRunner, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addPreviewCheckbox(PlugInFilterRunner) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addPreviewCheckbox(PlugInFilterRunner, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addPreviousVersion(String, long, String) - Method in class net.imagej.updater.FileObject
 
addProgress(Progress) - Method in class net.imagej.updater.util.AbstractProgressable
 
addProgress(Progress) - Method in interface net.imagej.updater.util.Progressable
 
addRadioButtonGroup(String, String[], int, int, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
Adds a radio button group.
addRadioButtonGroup(String, String[], int, int, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
Adds a radio button group.
adds - Variable in class net.imagej.ui.swing.updater.DiffView
 
AddShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddShort
 
AddShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddShort
 
AddShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddShort
 
addSlice(String, ImageProcessor) - Method in class net.imagej.legacy.translate.MergedRgbVirtualStack
Adds the image in 'ip' to the end of the stack.
addSlice(String, ImageProcessor, int) - Method in class net.imagej.legacy.translate.MergedRgbVirtualStack
Adds the image in 'ip' to the stack following slice 'n'.
addSlice(ImageProcessor) - Method in class net.imagej.legacy.translate.MergedRgbVirtualStack
 
addSlice(String) - Method in class net.imagej.legacy.translate.MergedRgbVirtualStack
 
addSlice(String, Object) - Method in class net.imagej.legacy.translate.MergedRgbVirtualStack
 
addSlider(String, double, double, double) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addSlider(String, double, double, double) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
AddSpecifiedNoiseToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by applying a user calibrated amount of random noise to an input Dataset.
AddSpecifiedNoiseToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddSpecifiedNoiseToDataValues
 
addStringField(String, String) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addStringField(String, String, int) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addStringField(String, String) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addStringField(String, String, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
addText(String) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
addText(String, SimpleAttributeSet) - Method in class net.imagej.ui.swing.updater.ConflictDialog
 
addTextAreas(String, String, int, int) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
addTextAreas(String, String, int, int) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
AddToDataValues<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by adding a user defined constant value to an input Dataset.
AddToDataValues() - Constructor for class net.imagej.plugins.commands.assign.AddToDataValues
 
addToolListener(ToolListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
addToRegionOfInterest(BezierPath, GeneralPathRegionOfInterest) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
addToRegionOfInterest(PathIterator, GeneralPathRegionOfInterest) - Static method in class net.imagej.ui.swing.overlay.BezierPathFunctions
 
addUndoableEditListener(UndoableEditListener) - Method in interface net.imagej.ui.swing.overlay.JHotDrawTool
 
addUndoableEditListener(UndoableEditListener) - Method in class net.imagej.ui.swing.overlay.ToolDelegator
 
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedByte
 
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedByte
 
AddUnsignedByte() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedByte
 
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedInt
 
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedInt
 
AddUnsignedInt() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedInt
 
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedLong
 
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedLong
 
AddUnsignedLong() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedLong
 
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedShort
 
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedShort
 
AddUnsignedShort() - Constructor for class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedShort
 
addUnsignedShortSlice(String, Object) - Method in class net.imagej.legacy.translate.MergedRgbVirtualStack
Obsolete.
addUpdateSite(String, String, String, String, long) - Method in class net.imagej.updater.FilesCollection
 
addUpdateSite(UpdateSite) - Method in class net.imagej.updater.FilesCollection
 
addUpdateSite(String, UpdateSite) - Method in class net.imagej.updater.FilesCollection
 
addWindow(Frame) - Method in class net.imagej.ui.swing.updater.SwingUserInterface
 
addWindow(Frame) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
addWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface
 
addWindow(Frame) - Method in class net.imagej.updater.util.UpdaterUserInterface.StderrInterface
 
adjustmentValueChanged(AdjustmentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
adjustMinMax(Img<T>, Object) - Static method in class net.imagej.ops.create.img.Imgs
Adjusts the given Img to match the bounds of the specified Interval.
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat32
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Cfloat64
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Float32
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Float64
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int16
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int32
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int64
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Int8
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint16
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint32
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint64
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Convert.Uint8
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.DoG
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Gauss
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Max
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Mean
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Median
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Min
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Sigma
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Filter.Variance
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Image.DistanceTransform
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Image.Normalize
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Labeling.CCA
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThan
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.GreaterThanOrEqual
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.LessThan
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Logic.LessThanOrEqual
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Add
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Complement
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Divide
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.LeftShift
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Multiply
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Power
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Remainder
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.RightShift
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.Subtract
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Math.UnsignedRightShift
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Stats.Mean
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Transform.Crop
 
ALIASES - Static variable in interface net.imagej.ops.Ops.Transform.ScaleView
 
allocateColorTables(ImgPlus<?>) - Static method in class net.imagej.plugins.commands.restructure.RestructureUtils
Modifies an given ImgPlus by allocating 1 color table reference for each plane in the ImgPlus.
allPlanes - Variable in class net.imagej.plugins.commands.assign.MathCommand
 
analyzeByteCode(InputStream, File) - Static method in class net.imagej.updater.Diff
Inspect the byte code of a class file.
analyzeByteCode(InputStream, boolean) - Static method in class net.imagej.updater.Diff
Analyze the byte code of a class file.
analyzeDependencies(FileObject) - Method in class net.imagej.updater.FilesCollection
 
And() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.And
 
And() - Constructor for class net.imagej.ops.logic.IIToIIOutputII.And
 
And() - Constructor for class net.imagej.ops.logic.IIToRAIOutputII.And
 
and(boolean, boolean) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(T, T, T) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
and(IterableInterval<T>, IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.logic.LogicNamespace
 
And() - Constructor for class net.imagej.ops.math.BinaryRealTypeMath.And
 
and(int, int) - Method in class net.imagej.ops.math.MathNamespace
 
and(long, long) - Method in class net.imagej.ops.math.MathNamespace
 
and(O, I1, I2) - Method in class net.imagej.ops.math.MathNamespace
 
and(Overlay) - Method in class net.imagej.overlay.CompositeOverlay
 
and(FilesCollection.Filter, FilesCollection.Filter) - Method in class net.imagej.updater.FilesCollection
 
AndDataValuesWith<T extends RealType<T>> - Class in net.imagej.plugins.commands.assign
Fills an output Dataset by ANDing an input Dataset with a user defined constant value.
AndDataValuesWith() - Constructor for class net.imagej.plugins.commands.assign.AndDataValuesWith
 
AngleFigure() - Constructor for class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter.AngleFigure
 
AngleJHotDrawAdapter - Class in net.imagej.ui.swing.overlay
JHotDraw adapter for angle overlays.
AngleJHotDrawAdapter() - Constructor for class net.imagej.ui.swing.overlay.AngleJHotDrawAdapter
 
AngleJHotDrawAdapter.AngleFigure - Class in net.imagej.ui.swing.overlay
 
AngleOverlay - Class in net.imagej.overlay
Represents an angle having a center point and two end points.
AngleOverlay() - Constructor for class net.imagej.overlay.AngleOverlay
 
AngleOverlay(Context) - Constructor for class net.imagej.overlay.AngleOverlay
 
AngleOverlay(Context, double[], double[], double[]) - Constructor for class net.imagej.overlay.AngleOverlay
 
Animation - Class in net.imagej.animation
The Animation class takes care of running an animation along an axis.
Animation(ImageDisplay) - Constructor for class net.imagej.animation.Animation
Creates an animation for the given ImageDisplay.
animation() - Method in class net.imagej.ImageJ
Gets this application context's AnimationService.
AnimationOptions - Class in net.imagej.plugins.commands.animation
Plugin for adjusting options that affect the behavior of animations.
AnimationOptions() - Constructor for class net.imagej.plugins.commands.animation.AnimationOptions
 
AnimationService - Interface in net.imagej.animation
Interface for service that works with Animations.
AnnotatedSpace<A extends Axis> - Interface in net.imagej.space
A Euclidean space with associated metadata about each dimension of the space.
appAbout() - Method in class net.imagej.legacy.IJ1Helper
Displays the About ImageJ 1.x dialog.
append(UsageStats) - Method in class net.imagej.usage.JSONBuilder
Appends the given usage statistics to the JSON structure.
appendColumn() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendColumn(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendColumn() - Method in class net.imagej.table.AbstractTable
 
appendColumn(String) - Method in class net.imagej.table.AbstractTable
 
appendColumn() - Method in interface net.imagej.table.Table
Appends a column (with no header) to the table.
appendColumn(String) - Method in interface net.imagej.table.Table
Appends a column with the given header to the table.
appendColumns(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendColumns(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendColumns(int) - Method in class net.imagej.table.AbstractTable
 
appendColumns(String...) - Method in class net.imagej.table.AbstractTable
 
appendColumns(int) - Method in interface net.imagej.table.Table
Appends a number of columns (with no headers) to the table.
appendColumns(String...) - Method in interface net.imagej.table.Table
Appends a block of columns with the given headers to the table.
appendRow() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendRow(String) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendRow() - Method in class net.imagej.table.AbstractTable
 
appendRow(String) - Method in class net.imagej.table.AbstractTable
 
appendRow() - Method in interface net.imagej.table.Table
Appends a row (with no header) to the table.
appendRow(String) - Method in interface net.imagej.table.Table
Appends a row with the given header to the table.
appendRows(int) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendRows(String...) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
appendRows(int) - Method in class net.imagej.table.AbstractTable
 
appendRows(String...) - Method in class net.imagej.table.AbstractTable
 
appendRows(int) - Method in interface net.imagej.table.Table
Appends a block of rows (with no headers) to the table.
appendRows(String...) - Method in interface net.imagej.table.Table
Appends a block of rows with the given headers to the table.
apply(Iterable<BitType>, Iterable<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
apply(IterableInterval<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
apply(IterableInterval<BitType>, IterableInterval<T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
apply(BitType, Comparable<? super T>, T) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
apply(BitType, T, T, Comparator<? super T>) - Method in class net.imagej.ops.threshold.ThresholdNamespace
 
applyChanges() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
ApplyConstantThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.apply
Applies the given threshold value to every element along the given Iterable input.
ApplyConstantThreshold() - Constructor for class net.imagej.ops.threshold.apply.ApplyConstantThreshold
 
ApplyLookupTable - Class in net.imagej.plugins.commands.misc
Reads a lookup table from a URL.
ApplyLookupTable() - Constructor for class net.imagej.plugins.commands.misc.ApplyLookupTable
 
applyLUT(ColorTable, ImageDisplay) - Method in class net.imagej.lut.DefaultLUTService
 
applyLUT(ColorTable, ImageDisplay) - Method in interface net.imagej.lut.LUTService
Applies the given ColorTable to the active view of the specified ImageDisplay.
ApplyManualThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.apply
Applies a threshold to an Img.
ApplyManualThreshold() - Constructor for class net.imagej.ops.threshold.apply.ApplyManualThreshold
 
applyOrUpload - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
applyPatches() - Method in class net.imagej.patcher.LegacyEnvironment
Applies the configuration patches.
ApplyThreshold<I,O> - Interface in net.imagej.ops.threshold
An algorithm for applying a threshold value to an object.
applyThreshold - Variable in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
applyThresholdComp - Variable in class net.imagej.ops.threshold.AbstractApplyThresholdIterable
 
ApplyThresholdComparable<T> - Class in net.imagej.ops.threshold.apply
Applies a threshold value (the second input) to the given comparable object, producing a BitType set to 1 iff the object compares above the threshold.
ApplyThresholdComparable() - Constructor for class net.imagej.ops.threshold.apply.ApplyThresholdComparable
 
ApplyThresholdComparator<T> - Class in net.imagej.ops.threshold.apply
Applies a threshold value (the second input) to the given object using the specified comparator, producing a BitType set to 1 iff the object compares above the threshold.
ApplyThresholdComparator() - Constructor for class net.imagej.ops.threshold.apply.ApplyThresholdComparator
 
ApplyThresholdIterable<T,I extends Iterable<T>,O> - Interface in net.imagej.ops.threshold
Interface for ApplyThreshold implementations that operate over an iteration.
ApplyThresholdMethod - Class in net.imagej.ops.threshold
Ops which computes and apply a global threshold to an Img.
ApplyThresholdMethod.Huang<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.IJ1<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Intermodes<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.IsoData<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Li<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.MaxEntropy<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.MaxLikelihood<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Mean<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.MinError<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Minimum<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Moments<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Otsu<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Percentile<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.RenyiEntropy<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Rosin<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Shanbhag<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Triangle<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethod.Yen<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal - Class in net.imagej.ops.threshold
Ops that apply a global threshold locally to a RandomAccessibleInterval.
ApplyThresholdMethodLocal.LocalHuangThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalIJ1Threshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalIntermodesThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalIsoDataThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalLiThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMaxEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMaxLikelihoodThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMinErrorThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMinimumThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalMomentsThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalOtsuThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalPercentileThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalRenyiEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalRosinThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalShanbhagThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalTriangleThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
ApplyThresholdMethodLocal.LocalYenThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold
 
appPrefs() - Method in class net.imagej.legacy.IJ1Helper
Handles display of the ImageJ 1.x preferences.
appQuit() - Method in class net.imagej.legacy.IJ1Helper
Handles shutdown of ImageJ 1.x.
AppUtils - Class in net.imagej.util
Useful methods for obtaining details of the ImageJ application environment.
arccos(double) - Method in class net.imagej.ops.math.MathNamespace
 
arccos(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccos() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccos
 
arccosh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccosh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccosh
 
arccot(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccot() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccot
 
arccoth(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccoth() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccoth
 
arccsc(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccsc() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccsc
 
arccsch(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arccsch() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arccsch
 
arcsec(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arcsec() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsec
 
arcsech(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arcsech() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsech
 
arcsin(double) - Method in class net.imagej.ops.math.MathNamespace
 
arcsin(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arcsin() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsin
 
arcsinh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arcsinh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arcsinh
 
arctan(double) - Method in class net.imagej.ops.math.MathNamespace
 
arctan(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arctan() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arctan
 
arctanh(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Arctanh() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Arctanh
 
areAllSelectedFilesUploadable() - Method in class net.imagej.ui.swing.updater.FileTable
 
areInteger() - Method in class net.imagej.ChannelCollection
Returns true if all channels in the collection can be exactly represented with integer types.
args(Object[], Object...) - Static method in class net.imagej.ops.OpUtils
 
arrowLineDecoration - Static variable in class net.imagej.options.OptionsOverlay
 
ArrowTool - Class in net.imagej.plugins.tools
TODO
ArrowTool() - Constructor for class net.imagej.plugins.tools.ArrowTool
 
ascii(IterableInterval<T>, T, T) - Static method in class net.imagej.ops.image.ascii.DefaultASCII
 
ascii(IterableInterval<T>) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "ascii" operation on the given arguments.
ascii(IterableInterval<T>, T) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "ascii" operation on the given arguments.
ascii(IterableInterval<T>, T, T) - Method in class net.imagej.ops.image.ImageNamespace
Executes the "ascii" operation on the given arguments.
ascii - Variable in class net.imagej.plugins.commands.app.EasterEgg
 
asDouble(T) - Method in interface net.imagej.types.DataType
Converts value to a double.
asDouble(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
asDouble(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
asDouble(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
 
asDouble(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
asDouble(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
asDouble(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
 
asDouble(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
 
asDouble(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
asDouble(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
asDouble(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
 
asDouble(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
 
asDouble(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
 
asDouble(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
asDouble(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
asDouble(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
asDouble(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
askChoice(String[]) - Method in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
asLong(T) - Method in interface net.imagej.types.DataType
Converts value to a long.
asLong(ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
asLong(Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
asLong(ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
 
asLong(UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
asLong(BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
asLong(FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
 
asLong(IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
 
asLong(UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
asLong(ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
asLong(DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
 
asLong(LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
 
asLong(ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
 
asLong(UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
asLong(BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
asLong(PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
asLong(UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
asm(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
asm(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
assign(T, T) - Method in class net.imagej.ops.math.MathNamespace
 
Assign() - Constructor for class net.imagej.ops.math.NullaryNumericTypeMath.Assign
 
assignInputs(Module, Object...) - Method in class net.imagej.ops.DefaultOpMatchingService
 
assignInputs(Module, Object...) - Method in interface net.imagej.ops.OpMatchingService
Assigns arguments into the given module's inputs.
asType(ImgPlus<?>, T) - Method in class net.imagej.DefaultImgPlusService
 
asType(ImgPlus<?>, T) - Method in interface net.imagej.ImgPlusService
Given an ImgPlus of unknown type this returns a typed ImgPlus of a given type.
atan2(PreciseFixedFloatType, PreciseFixedFloatType) - Static method in class net.imagej.types.PreciseFixedFloatType
 
atLineStart - Variable in class net.imagej.updater.util.SkipHashedLines
 
Attribute(int) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
 
authors - Variable in class net.imagej.updater.FileObject
 
AutoContrast - Class in net.imagej.plugins.commands.display
Plugin that auto-thresholds each channel.
AutoContrast() - Constructor for class net.imagej.plugins.commands.display.AutoContrast
 
autoGenerateConfigFile(File) - Method in class imagej.patcher.LegacyHooks
Deprecated.
 
autoGenerateConfigFile(File, File, String, String, StringBuilder) - Method in class imagej.patcher.LegacyHooks
Deprecated.
 
autoGenerateConfigFile(File) - Method in class net.imagej.patcher.LegacyHooks
 
autoGenerateConfigFile(File, File, String, String, StringBuilder) - Method in class net.imagej.patcher.LegacyHooks
 
autoscale(int) - Method in interface net.imagej.display.DatasetView
Autoscales the display range to match the data range, for the given channel.
autoscale(int) - Method in class net.imagej.display.DefaultDatasetView
 
AutoscaleMethod<T extends RealType<T>> - Interface in net.imagej.autoscale
An algorithm for computing suitable display ranges from interval data.
AutoscaleService - Interface in net.imagej.autoscale
Interface for service that works with autoscale algorithms.
autoThreshold() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
AvailableSites - Class in net.imagej.updater.util
Utility class for parsing the list of available update sites.
averageScale(double, double) - Method in class net.imagej.axis.AbstractCalibratedAxis
 
averageScale(double, double) - Method in interface net.imagej.axis.CalibratedAxis
Returns the average scale between two raw value coordinates along an axis.
averageScale(int) - Method in class net.imagej.display.DefaultImageDisplay
 
averageScale(int) - Method in class net.imagej.interval.AbstractCalibratedRealInterval
 
averageScale(int) - Method in class net.imagej.interval.CombinedCalibratedRealInterval
 
averageScale(int) - Method in interface net.imagej.space.CalibratedSpace
Returns the average scale along the given axis, for some reasonable interval.
AWTRenderingService - Class in net.imagej.ui.awt
AWT-based implementation of text rendering service.
AWTRenderingService() - Constructor for class net.imagej.ui.awt.AWTRenderingService
 
AWTScreenCaptureService - Class in net.imagej.ui.awt
An AWT implementation of the ScreenCaptureService interface.
AWTScreenCaptureService() - Constructor for class net.imagej.ui.awt.AWTScreenCaptureService
 
AWTTextRenderer - Class in net.imagej.ui.awt
The AWT implementation of the TextRenderer interface.
AWTTextRenderer() - Constructor for class net.imagej.ui.awt.AWTTextRenderer
 
Axes - Class in net.imagej.axis
An extensible enumeration of dimensional AxisTypes.
axes(CalibratedAxis[]) - Method in class net.imagej.DefaultDataset
 
axes(CalibratedAxis[]) - Method in class net.imagej.display.DefaultImageDisplay
 
axes(A[]) - Method in class net.imagej.space.AbstractAnnotatedSpace
 
axes(A[]) - Method in interface net.imagej.space.AnnotatedSpace
Copies the space's axes into the given array.
axes(A[]) - Method in class net.imagej.space.CombinedSpace
 
Axis - Interface in net.imagej.axis
A dimensional axis of an AnnotatedSpace.
axis(AxisType) - Method in interface net.imagej.Dataset
Gets the axis of the given type.
axis(int) - Method in class net.imagej.DefaultDataset
 
axis(int) - Method in class net.imagej.display.DefaultImageDisplay
 
axis(int) - Method in class net.imagej.space.AbstractAnnotatedSpace
 
axis(int) - Method in interface net.imagej.space.AnnotatedSpace
Gets the axis associated with the given dimension of the space.
axis(int) - Method in class net.imagej.space.CombinedSpace
 
AxisActivatedEvent - Class in net.imagej.display.event
An event indicating an axis has become the active one.
AxisActivatedEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisActivatedEvent
 
axisChanged() - Method in class net.imagej.plugins.commands.animation.AnimationOptions
Updates the first and last values when the axis changes.
axisChanged() - Method in class net.imagej.plugins.commands.restructure.DeleteAxis
Updates the last value when the axis changes.
axisChanged() - Method in class net.imagej.plugins.commands.restructure.ReorderAxis
 
AxisEvent - Class in net.imagej.display.event
An event indicating that one of an ImageDisplay's dimensional axes has changed.
AxisEvent(ImageDisplay) - Constructor for class net.imagej.display.event.AxisEvent
 
AxisEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisEvent
 
AxisPositionBackward - Class in net.imagej.plugins.commands.axispos
Updates the current display to show the previous plane along an axis
AxisPositionBackward() - Constructor for class net.imagej.plugins.commands.axispos.AxisPositionBackward
 
AxisPositionEvent - Class in net.imagej.display.event
An event indicating that a display's dimensional position has changed.
AxisPositionEvent(ImageDisplay) - Constructor for class net.imagej.display.event.AxisPositionEvent
 
AxisPositionEvent(ImageDisplay, AxisType) - Constructor for class net.imagej.display.event.AxisPositionEvent
 
AxisPositionForward - Class in net.imagej.plugins.commands.axispos
Updates the current display to show the next plane along an axis
AxisPositionForward() - Constructor for class net.imagej.plugins.commands.axispos.AxisPositionForward
 
AxisPositionHandler - Class in net.imagej.plugins.tools
Handles keyboard and mouse wheel operations that change the dimensional position.
AxisPositionHandler() - Constructor for class net.imagej.plugins.tools.AxisPositionHandler
 
AxisSubrange - Class in net.imagej.sampler
An AxisSubrange defines a set of position indices using various constructors.
AxisSubrange(long) - Constructor for class net.imagej.sampler.AxisSubrange
Create an AxisSubrange from a single value.
AxisSubrange(long, long) - Constructor for class net.imagej.sampler.AxisSubrange
Create an AxisSubrange from one position to another position and everything in between.
AxisSubrange(long, long, long) - Constructor for class net.imagej.sampler.AxisSubrange
Create an AxisSubrange from one position to another position stepping by a given value.
AxisSubrange(ImageDisplay, AxisType, String, boolean) - Constructor for class net.imagej.sampler.AxisSubrange
Create an AxisSubrange from a String definition.
AxisType - Interface in net.imagej.axis
A dimensional axis type, for describing the dimensions of a TypedSpace.

B

b() - Method in class net.imagej.axis.Variable2Axis
 
B(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds
The partial sum B from C.
backgroundChange() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
BASE_PRIORITY - Static variable in class net.imagej.plugins.tools.AbstractColorTool
 
Batch() - Constructor for class net.imagej.legacy.LegacyCommandline.Batch
 
bck(int) - Method in class net.imagej.display.AbstractDataView
 
bck(int) - Method in class net.imagej.display.DefaultImageDisplay
 
bck() - Method in class net.imagej.Position
Moves the Position backward by one step.
bck(int) - Method in class net.imagej.Position
Moves the Position backward one step in specified dimension.
BCViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain
Base class for BinaryComputerOps that delegate to other BinaryComputerOps.
BCViaBC() - Constructor for class net.imagej.ops.special.chain.BCViaBC
 
BCViaBCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryComputerOps that delegate to other BinaryComputerOps with all matching types (inputs same as output).
BCViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BCViaBCAllSame
 
BCViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryComputerOps that delegate to other BinaryComputerOps with the same input and output types.
BCViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BCViaBCSameIO
 
Benchmark - Class in net.imagej.plugins.commands.misc
This is a placeholder command for as yet unfinished Benchmark command.
Benchmark() - Constructor for class net.imagej.plugins.commands.misc.Benchmark
 
BezierPathFunctions - Class in net.imagej.ui.swing.overlay
Utility functions for GeneralPathJHotDrawAdapter.
BezierPathFunctions() - Constructor for class net.imagej.ui.swing.overlay.BezierPathFunctions
 
BezierPathFunctions.OP - Enum in net.imagej.ui.swing.overlay
 
BFViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to BinaryComputerOps.
BFViaBC() - Constructor for class net.imagej.ops.special.chain.BFViaBC
 
BFViaBCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to BinaryComputerOps with all matching types (inputs same as output).
BFViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BFViaBCAllSame
 
BFViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to BinaryComputerOps with the same input and output types.
BFViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BFViaBCSameIO
 
BFViaBF<I1 extends DI1,I2 extends DI2,O,DI1,DI2,DO extends O> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps.
BFViaBF() - Constructor for class net.imagej.ops.special.chain.BFViaBF
 
BFViaBFAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps with all matching types (inputs same as output).
BFViaBFAllSame() - Constructor for class net.imagej.ops.special.chain.BFViaBFAllSame
 
BFViaBFSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryFunctionOps that delegate to other BinaryFunctionOps with the same input and output types.
BFViaBFSameIO() - Constructor for class net.imagej.ops.special.chain.BFViaBFSameIO
 
BgColorTool - Class in net.imagej.plugins.tools
The tool that displays the current background color.
BgColorTool() - Constructor for class net.imagej.plugins.tools.BgColorTool
 
BHCFViaBC<I1 extends DI1,I2 extends DI2,O extends DO,DI1,DI2,DO> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryComputerOps.
BHCFViaBC() - Constructor for class net.imagej.ops.special.chain.BHCFViaBC
 
BHCFViaBCAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryComputerOps with all matching types (inputs same as output).
BHCFViaBCAllSame() - Constructor for class net.imagej.ops.special.chain.BHCFViaBCAllSame
 
BHCFViaBCSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryComputerOps with the same input and output types.
BHCFViaBCSameIO() - Constructor for class net.imagej.ops.special.chain.BHCFViaBCSameIO
 
BHCFViaBHCF<I1 extends DI1,I2 extends DI2,O,DI1,DI2> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryHybridCFs.
BHCFViaBHCF() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCF
 
BHCFViaBHCFAllSame<IO> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryHybridCFs with all matching types (inputs same as output).
BHCFViaBHCFAllSame() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCFAllSame
 
BHCFViaBHCFSameIO<I1,I2,O> - Class in net.imagej.ops.special.chain
Base class for BinaryHybridCFs that delegate to BinaryHybridCFs with the same input and output types.
BHCFViaBHCFSameIO() - Constructor for class net.imagej.ops.special.chain.BHCFViaBHCFSameIO
 
BIG_FONT_SIZE - Static variable in class net.imagej.ui.swing.updater.DiffView
 
bigBold - Variable in class net.imagej.ui.swing.updater.DiffView
 
BigComplex - Class in net.imagej.types
A complex number that stores values in BigDecimal (arbitrary) precision.
BigComplex() - Constructor for class net.imagej.types.BigComplex
Default constructor: value = (0,0).
BigComplex(long, long) - Constructor for class net.imagej.types.BigComplex
Constructor from longs.
BigComplex(double, double) - Constructor for class net.imagej.types.BigComplex
Constructor from doubles.
BigComplex(BigInteger, BigInteger) - Constructor for class net.imagej.types.BigComplex
Constructor from BigIntegers.
BigComplex(BigDecimal, BigDecimal) - Constructor for class net.imagej.types.BigComplex
Constructor from BigDecimals.
BigComplex(String, String) - Constructor for class net.imagej.types.BigComplex
Constructor from Strings.
bimodalTest(double[]) - Static method in class net.imagej.ops.threshold.Thresholds
 
Binarize<T extends RealType<T>> - Class in net.imagej.plugins.commands.binary
Creates or updates a mask Dataset of type BitType.
Binarize() - Constructor for class net.imagej.plugins.commands.binary.Binarize
 
binary(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.computer.Computers
Gets the best BinaryComputerOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.function.Functions
Gets the best BinaryFunctionOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.function.Functions
Gets the best BinaryFunctionOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, Class<O>, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best BinaryInplaceOp implementation for the given types and arguments, populating its inputs.
binary(OpEnvironment, Class<? extends Op>, O, O, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best BinaryInplaceOp implementation for the given types and arguments, populating its inputs.
binary1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best BinaryInplace1Op implementation for the given types and arguments, populating its inputs.
binary1(OpEnvironment, Class<? extends Op>, O, I2, Object...) - Static method in class net.imagej.ops.special.inplace.Inplaces
Gets the best BinaryInplace1Op implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCF(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCF implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, Class<O>, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI(OpEnvironment, Class<? extends Op>, O, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCFI1(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCFI1 implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, Class<O>, Class<I>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, Class<O>, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI(OpEnvironment, Class<? extends Op>, O, I, I, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, Class<O>, Class<I1>, Class<I2>, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, Class<O>, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
binaryCI1(OpEnvironment, Class<? extends Op>, O, I1, I2, Object...) - Static method in class net.imagej.ops.special.hybrid.Hybrids
Gets the best BinaryHybridCI1 implementation for the given types and arguments, populating its inputs.
binaryComputer(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
binaryComputer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
binaryComputer(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
BinaryComputerOp<I1,I2,O> - Interface in net.imagej.ops.special.computer
A binary computer computes a result from two given inputs, storing it into the specified output reference.
binaryFunction(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
binaryFunction(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
binaryFunction(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
BinaryFunctionOp<I1,I2,O> - Interface in net.imagej.ops.special.function
A binary function calculates a result from two given inputs, returning it as a new object.
binaryHybrid(OpEnvironment, Class<? extends Op>, IterableInterval<T>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
binaryHybrid(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
binaryHybrid(OpEnvironment, Class<? extends Op>, I1, I2, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
BinaryHybridCF<I1,I2,O> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp or BinaryFunctionOp.
BinaryHybridCFI<I,O extends I> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp, BinaryFunctionOp or BinaryInplaceOp.
BinaryHybridCFI1<I1,I2,O extends I1> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp, BinaryFunctionOp or BinaryInplace1Op.
BinaryHybridCI<I,O extends I> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp or BinaryInplaceOp.
BinaryHybridCI1<I1,I2,O extends I1> - Interface in net.imagej.ops.special.hybrid
A hybrid binary operation which can be used as a BinaryComputerOp, or BinaryInplace1Op.
BinaryInplace1OnlyOp<A,I> - Interface in net.imagej.ops.special.inplace
A BinaryInplace1Op which is not a hybrid.
BinaryInplace1Op<I1,I2,O extends I1> - Interface in net.imagej.ops.special.inplace
A binary inplace operation which computes a result from two given arguments, storing it back into the first input (i.e., mutating it).
BinaryInplaceOnlyOp<A> - Interface in net.imagej.ops.special.inplace
A BinaryInplaceOp which is not a hybrid.
BinaryInplaceOp<I,O extends I> - Interface in net.imagej.ops.special.inplace
A binary inplace operation is an op which computes a result from two given arguments, storing it either the first or second argument (i.e., mutating it).
BinaryInput<I1,I2> - Interface in net.imagej.ops.special
Interface for objects with two typed input parameters.
BinaryMaskOverlay<U extends BitType,V extends Img<U>> - Class in net.imagej.overlay
TODO
BinaryMaskOverlay() - Constructor for class net.imagej.overlay.BinaryMaskOverlay
 
BinaryMaskOverlay(Context) - Constructor for class net.imagej.overlay.BinaryMaskOverlay
 
BinaryMaskOverlay(Context, BinaryMaskRegionOfInterest<U, V>) - Constructor for class net.imagej.overlay.BinaryMaskOverlay
 
BinaryOp<I1,I2,O> - Interface in net.imagej.ops.special
A binary operation computes a result from two given inputs.
BinaryOutputFactory<I1,I2,O> - Interface in net.imagej.ops.special
Factory which creates a typed output object given two typed inputs.
BinaryRealTypeMath - Class in net.imagej.ops.math
Binary Ops of the math namespace which operate on RealTypes.
BinaryRealTypeMath.Add<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the addition of the real components of two input real numbers.
BinaryRealTypeMath.And<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the logical AND of the real component of two input real numbers.
BinaryRealTypeMath.Divide<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the division of the real component of two input real numbers.
BinaryRealTypeMath.Multiply<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the multiplication of the real component of two input real numbers.
BinaryRealTypeMath.Or<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the logical OR of the real component of two input real numbers.
BinaryRealTypeMath.Subtract<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the subtraction between the real component of two input real numbers.
BinaryRealTypeMath.Xor<I1 extends RealType<I1>,I2 extends RealType<I2>,O extends RealType<O>> - Class in net.imagej.ops.math
Sets the real component of an output real number to the logical XOR of the real component of two input real numbers.
Binner<T extends RealType<T>> - Class in net.imagej.plugins.commands.imglib
Reduces the size of an image by integral scale factors.
Binner() - Constructor for class net.imagej.plugins.commands.imglib.Binner
 
BIOViaBI<A extends DO,DI,DO extends DI> - Class in net.imagej.ops.special.chain
Base class for BinaryInplaceOnlyOps that delegate to BinaryInplaceOps.
BIOViaBI() - Constructor for class net.imagej.ops.special.chain.BIOViaBI
 
BIOViaBISame<A> - Class in net.imagej.ops.special.chain
Base class for BinaryInplaceOnlyOps that delegate to BinaryInplaceOps with all matching types (inputs same as output).
BIOViaBISame() - Constructor for class net.imagej.ops.special.chain.BIOViaBISame
 
Bit() - Constructor for class net.imagej.ops.convert.ConvertImages.Bit
 
bit(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(Img<BitType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(BitType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(BitType, T) - Method in class net.imagej.ops.convert.ConvertNamespace
 
bit(long) - Static method in class net.imagej.ops.convert.Types
 
bit(double) - Static method in class net.imagej.ops.convert.Types
 
bit(boolean) - Static method in class net.imagej.ops.convert.Types
 
bit(BigInteger) - Static method in class net.imagej.ops.convert.Types
 
bitCount() - Method in interface net.imagej.types.DataType
Number of bits of information required to represent data in the type.
bitCount() - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
bitCount() - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataType16BitSignedInteger
 
bitCount() - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataType32BitSignedFloat
 
bitCount() - Method in class net.imagej.types.DataType32BitSignedInteger
 
bitCount() - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
bitCount() - Method in class net.imagej.types.DataType64BitSignedFloat
 
bitCount() - Method in class net.imagej.types.DataType64BitSignedInteger
 
bitCount() - Method in class net.imagej.types.DataType8BitSignedInteger
 
bitCount() - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
bitCount() - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
BitTypeVertexInterpolator - Class in net.imagej.ops.geom.geom3d.mesh
The BitTypeVertexInterpolator returns the point which is in the middle of the two input vertices.
BitTypeVertexInterpolator() - Constructor for class net.imagej.ops.geom.geom3d.mesh.BitTypeVertexInterpolator
 
bitwiseAnd(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
bitwiseOr(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
BLACK - Static variable in class net.imagej.plugins.commands.binary.Binarize
 
blackTopHat(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
blackTopHat(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
blankLine() - Method in class net.imagej.ui.swing.updater.FileDetails
 
BLUE - Static variable in class net.imagej.display.ColorTables
 
bold - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
bold - Variable in class net.imagej.ui.swing.updater.DiffView
 
bold(String) - Method in class net.imagej.ui.swing.updater.FileDetails
 
bold - Variable in class net.imagej.ui.swing.updater.FileTable
 
BoolColumn - Class in net.imagej.table
Efficient implementation of Column for boolean primitives.
BoolColumn() - Constructor for class net.imagej.table.BoolColumn
 
BoolColumn(String) - Constructor for class net.imagej.table.BoolColumn
 
BooleanAnd() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanAnd
 
BooleanEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanEqual
 
BooleanNot() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanNot
 
BooleanNotEqual() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanNotEqual
 
BooleanOr() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanOr
 
BooleanTypeLogic - Class in net.imagej.ops.logic
Logic operations with BooleanType as output.
BooleanTypeLogic.And<T extends BooleanType<T>> - Class in net.imagej.ops.logic
Performs logical and (&&) between two BooleanTypes.
BooleanTypeLogic.ComparableGreaterThan<I extends Comparable<I>,O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs greater-than (>) between two Comparables.
BooleanTypeLogic.ComparableGreaterThanOrEqual<I extends Comparable<I>,O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs greater-than-or-equal (>=) between two Comparables.
BooleanTypeLogic.ComparableLessThan<I extends Comparable<I>,O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs less-than (<) between two Comparables.
BooleanTypeLogic.ComparableLessThanOrEqual<I extends Comparable<I>,O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs less-than-or-equal (<=) between two Comparables.
BooleanTypeLogic.Not<T extends BooleanType<T>> - Class in net.imagej.ops.logic
Performs logical not (!) on a BooleanType.
BooleanTypeLogic.ObjectsEqual<O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs equals (==) between two Objects.
BooleanTypeLogic.ObjectsNotEqual<O extends BooleanType<O>> - Class in net.imagej.ops.logic
Performs not-equals (!=) between two Objects.
BooleanTypeLogic.Or<T extends BooleanType<T>> - Class in net.imagej.ops.logic
Performs logical or (||) between two BooleanTypes.
BooleanTypeLogic.Xor<T extends BooleanType<T>> - Class in net.imagej.ops.logic
Performs logical xor (^) between two BooleanTypes.
BooleanXor() - Constructor for class net.imagej.ops.logic.PrimitiveLogic.BooleanXor
 
BoolTable - Interface in net.imagej.table
A table of boolean values.
bothInstallAndUninstall(FileObject, FilesCollection, FilesCollection) - Method in class net.imagej.updater.Conflicts
 
bottomPanel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
bottomPanel2 - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
boundaryPixelCount(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCount(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCountConvexHull(Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCountConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCountConvexHull(DoubleType, Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundaryPixelCountConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySize(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySize(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySize(Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySize(DoubleType, Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySizeConvexHull(Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySizeConvexHull(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySizeConvexHull(DoubleType, Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundarySizeConvexHull(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boundingBox(Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
bounds - Variable in class net.imagej.ui.swing.overlay.PointFigure
 
BoxCount<B extends BooleanType<B>> - Class in net.imagej.ops.topology
An N-dimensional box counting that can be used to estimate the fractal dimension of an interval
BoxCount() - Constructor for class net.imagej.ops.topology.BoxCount
 
boxCount(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxCount(RandomAccessibleInterval<B>, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxCount(RandomAccessibleInterval<B>, Long, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxCount(RandomAccessibleInterval<B>, Long, Long, Double) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxCount(RandomAccessibleInterval<B>, Long, Long, Double, Long) - Method in class net.imagej.ops.topology.TopologyNamespace
 
boxivity(Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
boxivity(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boxivity(DoubleType, Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
boxivity(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
boxLayoutPanel(int) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
braces(Object[]) - Method in class net.imagej.ops.eval.OpEvaluator
 
brackets(Object[]) - Method in class net.imagej.ops.eval.OpEvaluator
 
BrightnessContrast<T extends RealType<T>> - Class in net.imagej.plugins.commands.display.interactive
Plugin that sets the minimum and maximum for scaling of display values.
BrightnessContrast() - Constructor for class net.imagej.plugins.commands.display.interactive.BrightnessContrast
 
brightnessContrastChanged() - Method in class net.imagej.plugins.commands.display.interactive.BrightnessContrast
Called when brightness or contrast changes.
BufferFactory<A,B> - Interface in net.imagej.ops.join
An object which can produce buffers using a UnaryOutputFactory.
button(String, String, ActionListener, Container) - Static method in class net.imagej.ui.swing.updater.SwingTools
 
ButtonDemo - Class in net.imagej.plugins.commands.debug
This command is example code that shows how one can make @Parameters that are Buttons which can fire callbacks when pressed.
ButtonDemo() - Constructor for class net.imagej.plugins.commands.debug.ButtonDemo
 
ByteCodeAnalyzer - Class in net.imagej.updater.util
An analyzer to find out which .jar files a given .jar file depends on.
ByteCodeAnalyzer(byte[]) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
 
ByteCodeAnalyzer(byte[], boolean) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
 
ByteCodeAnalyzer(byte[], ByteCodeAnalyzer.Mode) - Constructor for class net.imagej.updater.util.ByteCodeAnalyzer
 
ByteCodeAnalyzer.Attribute - Class in net.imagej.updater.util
 
ByteCodeAnalyzer.Field - Class in net.imagej.updater.util
 
ByteCodeAnalyzer.Interface - Class in net.imagej.updater.util
 
ByteCodeAnalyzer.Method - Class in net.imagej.updater.util
 
ByteCodeAnalyzer.Mode - Enum in net.imagej.updater.util
 
ByteColumn - Class in net.imagej.table
Efficient implementation of Column for byte primitives.
ByteColumn() - Constructor for class net.imagej.table.ByteColumn
 
ByteColumn(String) - Constructor for class net.imagej.table.ByteColumn
 
bytes - Variable in class net.imagej.updater.FilesUploader.DbXmlFile
 
ByteTable - Interface in net.imagej.table
A table of byte-precision integer values.

C

c() - Method in class net.imagej.axis.Variable3Axis
 
C(long[], int) - Static method in class net.imagej.ops.threshold.Thresholds
The partial sum C from C.
CachedOpEnvironment - Class in net.imagej.ops.cached
Creates CachedFunctionOps which know how to cache their outputs.
CachedOpEnvironment(OpEnvironment) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
 
CachedOpEnvironment(OpEnvironment, Collection<? extends OpInfo>) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
 
CachedOpEnvironment(OpEnvironment, Collection<? extends OpInfo>, Collection<Class<?>>) - Constructor for class net.imagej.ops.cached.CachedOpEnvironment
 
cacheFile(URL, boolean) - Method in class net.imagej.updater.Diff
Cache a file locally.
calcOutputValue() - Method in interface net.imagej.plugins.commands.neigh.Neighborhood3x3Watcher
Called after neighborhood is completely visited.
calculate(Dimensions, T) - Method in class net.imagej.ops.create.img.CreateImgFromDimsAndType
 
calculate(Img<T>) - Method in class net.imagej.ops.create.img.CreateImgFromImg
 
calculate(Img<T>) - Method in class net.imagej.ops.create.imgFactory.CreateImgFactoryFromImg
 
calculate() - Method in class net.imagej.ops.create.imgFactory.DefaultCreateImgFactory
 
calculate(Interval) - Method in class net.imagej.ops.create.imgLabeling.CreateImgLabelingFromInterval
 
calculate(Dimensions) - Method in class net.imagej.ops.create.imgLabeling.DefaultCreateImgLabeling
 
calculate(Img<T>) - Method in class net.imagej.ops.create.imgPlus.DefaultCreateImgPlus
 
calculate() - Method in class net.imagej.ops.create.integerType.DefaultCreateIntegerType
 
calculate(double[][]) - Method in class net.imagej.ops.create.kernel.CreateKernel2D
 
calculate(Double) - Method in class net.imagej.ops.create.kernelGauss.CreateKernelGaussSymmetric
 
calculate(double[]) - Method in class net.imagej.ops.create.kernelGauss.DefaultCreateKernelGauss
 
calculate(Double) - Method in class net.imagej.ops.create.kernelLog.CreateKernelLogSymmetric
 
calculate(double[]) - Method in class net.imagej.ops.create.kernelLog.DefaultCreateKernelLog
 
calculate() - Method in class net.imagej.ops.create.labelingMapping.DefaultCreateLabelingMapping
 
calculate() - Method in class net.imagej.ops.create.nativeType.DefaultCreateNativeType
 
calculate(Class<T>) - Method in class net.imagej.ops.create.object.CreateObjectFromClass
 
calculate(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.deconvolve.NonCirculantFirstGuess
 
calculate(String) - Method in class net.imagej.ops.eval.DefaultEval
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocHXY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocMeanX
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocMeanY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPX
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPXMinusY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPXPlusY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocPY
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocStdX
 
calculate(double[][]) - Method in class net.imagej.ops.features.haralick.helper.CoocStdY
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
 
calculate(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.AbstractFFTFilterF
compute output by extending the input(s) and running the filter
calculate(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>) - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF
 
calculate(Dimensions, T) - Method in class net.imagej.ops.filter.fft.CreateOutputFFTMethods
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.fft.FFTMethodsOpF
 
calculate(Dimensions) - Method in class net.imagej.ops.filter.fftSize.ComputeFFTMethodsSize
 
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PaddingIntervalCentered
 
calculate(I, Interval) - Method in class net.imagej.ops.filter.pad.PaddingIntervalOrigin
 
calculate(I) - Method in class net.imagej.ops.filter.pad.PadInput
 
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PadInputFFTMethods
 
calculate(I, Dimensions) - Method in class net.imagej.ops.filter.pad.PadShiftKernel
 
calculate(IterableInterval<?>) - Method in class net.imagej.ops.geom.CentroidII
 
calculate(LabelRegion<?>) - Method in class net.imagej.ops.geom.CentroidLabelRegion
 
calculate(Mesh) - Method in class net.imagej.ops.geom.CentroidMesh
 
calculate(Polygon) - Method in class net.imagej.ops.geom.CentroidPolygon
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.geom.DefaultCenterOfGravity
 
calculate(Polygon) - Method in class net.imagej.ops.geom.geom2d.DefaultBoundingBox
 
calculate(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.geom.geom2d.DefaultContour
 
calculate(Polygon) - Method in class net.imagej.ops.geom.geom2d.DefaultConvexHull2D
 
calculate(Polygon) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeret
 
calculate(Polygon) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeret
 
calculate(Polygon) - Method in class net.imagej.ops.geom.geom2d.DefaultMinorMajorAxis
 
calculate(Polygon) - Method in class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultConvexHull3D
 
calculate(IterableRegion<B>) - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.geom.geom3d.DefaultMarchingCubes
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVolumeMesh
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.DefaultVoxelization3D
 
calculate(Mesh) - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultSmallestOrientedBoundingBox
 
calculate(IterableInterval<?>) - Method in class net.imagej.ops.geom.SizeII
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.ascii.DefaultASCII
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
 
calculate(Iterable<T>) - Method in class net.imagej.ops.image.histogram.HistogramCreate
 
calculate(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.image.integral.WrappedIntegralImg
 
calculate(IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIFunction
 
calculate(String) - Method in class net.imagej.ops.lookup.LookupByName
 
calculate(Class<? extends Op>) - Method in class net.imagej.ops.lookup.LookupByType
 
calculate(IterableInterval<EI>) - Method in class net.imagej.ops.map.MapViewIIToII
 
calculate(RandomAccessibleInterval<EI>) - Method in class net.imagej.ops.map.MapViewRAIToRAI
 
calculate(RandomAccessible<EI>) - Method in class net.imagej.ops.map.MapViewRandomAccessToRandomAccess
 
calculate(String) - Method in class net.imagej.ops.run.RunByName
 
calculate(Op) - Method in class net.imagej.ops.run.RunByOp
 
calculate(Class<? extends Op>) - Method in class net.imagej.ops.run.RunByType
 
calculate(I1, I2) - Method in class net.imagej.ops.special.chain.BFViaBC
 
calculate(I1, I2) - Method in class net.imagej.ops.special.chain.BFViaBF
 
calculate(I) - Method in class net.imagej.ops.special.chain.UFViaUC
 
calculate(I) - Method in class net.imagej.ops.special.chain.UFViaUF
 
calculate(I1, I2) - Method in interface net.imagej.ops.special.function.BinaryFunctionOp
Calculates the output given two inputs.
calculate(I1) - Method in interface net.imagej.ops.special.function.BinaryFunctionOp
 
calculate() - Method in interface net.imagej.ops.special.function.NullaryFunctionOp
Calculates the output value.
calculate(I) - Method in interface net.imagej.ops.special.function.UnaryFunctionOp
Calculates the output given some input.
calculate() - Method in interface net.imagej.ops.special.function.UnaryFunctionOp
 
calculate(I1, I2) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
 
calculate(I1) - Method in interface net.imagej.ops.special.hybrid.BinaryHybridCF
 
calculate() - Method in interface net.imagej.ops.special.hybrid.NullaryHybridCF
 
calculate(I) - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
 
calculate() - Method in interface net.imagej.ops.special.hybrid.UnaryHybridCF
 
calculate(Iterable<I>) - Method in class net.imagej.ops.stats.DefaultMinMax
 
calculate(RandomAccessibleInterval<B>) - Method in class net.imagej.ops.topology.BoxCount
Counts the number of foreground sections in the interval repeatedly with different size sections
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.addDimensionView.AddDimensionViewMinMax
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.addDimensionView.DefaultAddDimensionView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeIntervalView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseNumericView.DefaultCollapseNumeric2CompositeView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeIntervalView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseRealView.DefaultCollapseReal2CompositeView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeIntervalView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.collapseView.DefaultCollapse2CompositeView
 
calculate(ImgPlus<T>, Interval) - Method in class net.imagej.ops.transform.crop.CropImgPlus
 
calculate(RandomAccessibleInterval<T>, Interval) - Method in class net.imagej.ops.transform.crop.CropRAI
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.dropSingletonDimensionsView.DefaultDropSingletonDimensionsView
 
calculate(F) - Method in class net.imagej.ops.transform.extendBorderView.DefaultExtendBorderView
 
calculate(F) - Method in class net.imagej.ops.transform.extendMirrorDoubleView.DefaultExtendMirrorDoubleView
 
calculate(F) - Method in class net.imagej.ops.transform.extendMirrorSingleView.DefaultExtendMirrorSingleView
 
calculate(F) - Method in class net.imagej.ops.transform.extendPeriodicView.DefaultExtendPeriodicView
 
calculate(F) - Method in class net.imagej.ops.transform.extendRandomView.DefaultExtendRandomView
 
calculate(F) - Method in class net.imagej.ops.transform.extendValueView.DefaultExtendValueView
 
calculate(F) - Method in class net.imagej.ops.transform.extendView.DefaultExtendView
 
calculate(F) - Method in class net.imagej.ops.transform.extendZeroView.DefaultExtendZeroView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.flatIterableView.DefaultFlatIterableView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.hyperSliceView.DefaultHyperSliceView
 
calculate(I) - Method in class net.imagej.ops.transform.interpolateView.DefaultInterpolateView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.intervalView.DefaultIntervalView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.intervalView.IntervalViewMinMax
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.invertAxisView.DefaultInvertAxisView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.DefaultOffsetView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.OffsetViewInterval
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.offsetView.OffsetViewOriginSize
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesInverseView.DefaultPermuteCoordinatesInverseView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesInverseView.PermuteCoordinateInverseViewOfDimension
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesView.DefaultPermuteCoordinatesView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.permuteCoordinatesView.PermuteCoordinatesViewOfDimension
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.permuteView.DefaultPermuteView
 
calculate(RealRandomAccessible<T>) - Method in class net.imagej.ops.transform.rasterView.DefaultRasterView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.rotateView.DefaultRotateView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.scaleView.DefaultScaleView
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.scaleView.WrappedScaleView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.shearView.DefaultShearView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.shearView.ShearViewInterval
 
calculate(List<RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.stackView.DefaultStackView
 
calculate(List<RandomAccessibleInterval<T>>) - Method in class net.imagej.ops.transform.stackView.StackViewWithAccessMode
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.subsampleView.DefaultSubsampleView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.subsampleView.SubsampleViewStepsForDims
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.translateView.DefaultTranslateView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.unshearView.DefaultUnshearView
 
calculate(RandomAccessible<T>) - Method in class net.imagej.ops.transform.unshearView.UnshearViewInterval
 
calculate(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.zeroMinView.DefaultZeroMinView
 
calculateTotalSize(List<Uploadable>) - Method in class net.imagej.updater.AbstractUploader
 
calculateTotalSize(List<Uploadable>) - Method in interface net.imagej.updater.Uploader
TODO
CalibratedAxis - Interface in net.imagej.axis
An axis with an associated AxisType, unit and calibration.
CalibratedRealInterval<A extends CalibratedAxis> - Interface in net.imagej.interval
A CalibratedRealInterval marries a TypedRealInterval with a CalibratedSpace.
CalibratedSpace<A extends CalibratedAxis> - Interface in net.imagej.space
A Euclidean space whose dimensions have units and calibrations.
calibratedValue(double) - Method in interface net.imagej.axis.CalibratedAxis
Returns a calibrated value given a raw position along the axis.
calibratedValue(double) - Method in class net.imagej.axis.ChapmanRichardsAxis
 
calibratedValue(double) - Method in class net.imagej.axis.DefaultLinearAxis
 
calibratedValue(double) - Method in class net.imagej.axis.ExponentialAxis
 
calibratedValue(double) - Method in class net.imagej.axis.ExponentialRecoveryAxis
 
calibratedValue(double) - Method in class net.imagej.axis.GammaVariateAxis
 
calibratedValue(double) - Method in class net.imagej.axis.GaussianAxis
 
calibratedValue(double) - Method in class net.imagej.axis.IdentityAxis
 
calibratedValue(double) - Method in class net.imagej.axis.InverseRodbardAxis
 
calibratedValue(double) - Method in class net.imagej.axis.LogLinearAxis
 
calibratedValue(double) - Method in class net.imagej.axis.PolynomialAxis
 
calibratedValue(double) - Method in class net.imagej.axis.PowerAxis
 
calibratedValue(double) - Method in class net.imagej.axis.RodbardAxis
 
Calibrator - Interface in net.imagej.units
Calibrators map values bidirectionally.
cancel(String) - Method in class net.imagej.ops.thread.chunker.AbstractChunker
Cancels the command execution, with the given reason for doing so.
cancel() - Method in class net.imagej.plugins.commands.assign.MathCommand
 
cancel(String) - Method in class net.imagej.plugins.commands.debug.PointSetDemo
 
cancel() - Method in class net.imagej.plugins.commands.display.ChannelsTool
 
cancel() - Method in class net.imagej.plugins.commands.overlay.AbstractOverlayProperties
 
cancel - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
cancel() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
cancel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
cancel() - Method in class net.imagej.updater.util.Downloader
 
cancelled - Variable in class net.imagej.updater.util.Downloader
 
canConvert(Object, Type) - Method in class net.imagej.convert.ConvertListToFinalInterval
 
canConvert(Object, Class<?>) - Method in class net.imagej.convert.ConvertListToFinalInterval
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.convert.ConvertListToFinalInterval
 
canConvert(Class<?>, Type) - Method in class net.imagej.convert.ConvertListToFinalInterval
Deprecated.
canConvert(Object, Type) - Method in class net.imagej.convert.DatasetToImgConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.convert.DatasetToImgConverter
 
canConvert(Class<?>, Type) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.DatasetToImagePlusConverter
 
canConvert(Class<?>, Type) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.ImageDisplayToImagePlusConverter
 
canConvert(Class<?>, Type) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.ImagePlusToDatasetConverter
 
canConvert(Class<?>, Type) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
canConvert(Class<?>, Class<?>) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
canConvert(Object, Type) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.ImagePlusToImageDisplayConverter
 
canConvert(Object, Class<?>) - Method in class net.imagej.legacy.convert.StringToImagePlusConverter
 
candidates(OpEnvironment, String, Class<? extends Op>, int, SpecialOp.Flavor) - Static method in interface net.imagej.ops.special.SpecialOp
 
canDisplay(Class<?>) - Method in class net.imagej.display.DefaultImageDisplay
 
canDisplay(Class<?>) - Method in class net.imagej.table.DefaultTableDisplay
 
canExecute(File) - Static method in class net.imagej.updater.util.UpdaterUtil
 
canOpen(String) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#canOpen instead.
canOpen(String) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#canOpen instead.
canSave(String) - Method in interface net.imagej.DatasetService
Deprecated.
Use io.scif.services.DatasetIOService#canSave instead.
canSave(String) - Method in class net.imagej.DefaultDatasetService
Deprecated.
Use io.scif.services.DatasetIOService#canSave instead.
canUpload - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
CanvasEvent - Class in net.imagej.display.event
An event indicating something has happened to an ImageCanvas.
CanvasEvent(ImageCanvas) - Constructor for class net.imagej.display.event.CanvasEvent
 
canView(Display<?>) - Method in class net.imagej.legacy.display.AbstractImagePlusDisplayViewer
 
canView(Display<?>) - Method in class net.imagej.ui.viewer.image.AbstractImageDisplayViewer
 
canView(Display<?>) - Method in class net.imagej.ui.viewer.table.AbstractTableDisplayViewer
 
canWrite(File) - Static method in class net.imagej.updater.UpToDate
 
capitalize(String) - Static method in class net.imagej.util.MediaWikiClient
 
capture() - Method in class net.imagej.legacy.display.LegacyImageDisplayViewer
 
capture() - Method in class net.imagej.ui.swing.viewer.image.AbstractSwingImageDisplayViewer
 
capture() - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
Captures the current view of data displayed in the canvas, including all JHotDraw embellishments.
capture() - Method in interface net.imagej.ui.viewer.image.ImageDisplayViewer
 
CaptureImage - Class in net.imagej.plugins.commands.display
Captures the current view of an ImageDisplay to a Dataset.
CaptureImage() - Constructor for class net.imagej.plugins.commands.display.CaptureImage
 
captureScreen() - Method in class net.imagej.display.DummyScreenCaptureService
No-op implementation.
captureScreen() - Method in interface net.imagej.display.ScreenCaptureService
 
CaptureScreen - Class in net.imagej.plugins.commands.display
Captures the entire screen to a Dataset.
CaptureScreen() - Constructor for class net.imagej.plugins.commands.display.CaptureScreen
 
captureScreen() - Method in class net.imagej.ui.awt.AWTScreenCaptureService
Captures the entire screen and returns the result in a Dataset.
captureScreenRegion(int, int, int, int) - Method in class net.imagej.display.DummyScreenCaptureService
No-op implementation.
captureScreenRegion(int, int, int, int) - Method in interface net.imagej.display.ScreenCaptureService
 
captureScreenRegion(int, int, int, int) - Method in class net.imagej.ui.awt.AWTScreenCaptureService
Captures a rectangular region of the screen and returns the result in a Dataset.
cast(T, BigComplex) - Method in interface net.imagej.types.DataType
Sets a BigComplex representation from a given variable of the underlying NumericType.
cast(BigComplex, T) - Method in interface net.imagej.types.DataType
Sets a given variable of the underlying NumericType to a value that is closest to a given BigComplex number.
cast(ComplexDoubleType, BigComplex) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
cast(BigComplex, ComplexDoubleType) - Method in class net.imagej.types.DataType128BitSignedComplexFloat
 
cast(Unsigned12BitType, BigComplex) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
cast(BigComplex, Unsigned12BitType) - Method in class net.imagej.types.DataType12BitUnsignedInteger
 
cast(ShortType, BigComplex) - Method in class net.imagej.types.DataType16BitSignedInteger
 
cast(BigComplex, ShortType) - Method in class net.imagej.types.DataType16BitSignedInteger
 
cast(UnsignedShortType, BigComplex) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
cast(BigComplex, UnsignedShortType) - Method in class net.imagej.types.DataType16BitUnsignedInteger
 
cast(BitType, BigComplex) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
cast(BigComplex, BitType) - Method in class net.imagej.types.DataType1BitUnsignedInteger
 
cast(FloatType, BigComplex) - Method in class net.imagej.types.DataType32BitSignedFloat
 
cast(BigComplex, FloatType) - Method in class net.imagej.types.DataType32BitSignedFloat
 
cast(IntType, BigComplex) - Method in class net.imagej.types.DataType32BitSignedInteger
 
cast(BigComplex, IntType) - Method in class net.imagej.types.DataType32BitSignedInteger
 
cast(UnsignedIntType, BigComplex) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
cast(BigComplex, UnsignedIntType) - Method in class net.imagej.types.DataType32BitUnsignedInteger
 
cast(ComplexFloatType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
cast(BigComplex, ComplexFloatType) - Method in class net.imagej.types.DataType64BitSignedComplexFloat
 
cast(DoubleType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedFloat
 
cast(BigComplex, DoubleType) - Method in class net.imagej.types.DataType64BitSignedFloat
 
cast(LongType, BigComplex) - Method in class net.imagej.types.DataType64BitSignedInteger
 
cast(BigComplex, LongType) - Method in class net.imagej.types.DataType64BitSignedInteger
 
cast(ByteType, BigComplex) - Method in class net.imagej.types.DataType8BitSignedInteger
 
cast(BigComplex, ByteType) - Method in class net.imagej.types.DataType8BitSignedInteger
 
cast(UnsignedByteType, BigComplex) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
cast(BigComplex, UnsignedByteType) - Method in class net.imagej.types.DataType8BitUnsignedInteger
 
cast(DataType<U>, U, DataType<V>, V) - Method in interface net.imagej.types.DataTypeService
Fills an output with a cast from an input given information about their DataTypes.
cast(DataType<U>, U, DataType<V>, V, BigComplex) - Method in interface net.imagej.types.DataTypeService
Fills an output with a cast from an input given information about their DataTypes.
cast(BigComplex, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedComplexFloat
 
cast(PreciseFixedFloatType, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
cast(BigComplex, PreciseFixedFloatType) - Method in class net.imagej.types.DataTypeVariableBitSignedFloat
 
cast(UnboundedIntegerType, BigComplex) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
cast(BigComplex, UnboundedIntegerType) - Method in class net.imagej.types.DataTypeVariableBitSignedInteger
 
cast(DataType<U>, U, DataType<V>, V) - Method in class net.imagej.types.DefaultDataTypeService
 
cast(DataType<U>, U, DataType<V>, V, BigComplex) - Method in class net.imagej.types.DefaultDataTypeService
 
cca(ImgLabeling<L, I>, RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement, Iterator<L>) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
cca(ImgLabeling<L, I>, RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
cca(RandomAccessibleInterval<T>, ConnectedComponents.StructuringElement) - Method in class net.imagej.ops.labeling.LabelingNamespace
 
ceil(double) - Method in class net.imagej.ops.math.MathNamespace
 
ceil(O, I) - Method in class net.imagej.ops.math.MathNamespace
 
Ceil() - Constructor for class net.imagej.ops.math.UnaryRealTypeMath.Ceil
 
CenterAwareComputerOp<I,O> - Interface in net.imagej.ops.map.neighborhood
A center aware computer calculates a result from a given input and its surrounding neighborhood, storing it into the specified output reference.
CenterAwareIntegralComputerOp<I,O> - Interface in net.imagej.ops.map.neighborhood
A center-aware computer calculates a result from a given input and the surrounding rectangular neighborhood in (multiple) integral images.
centerDialog(boolean) - Method in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
centerDialog(boolean) - Method in class net.imagej.patcher.HeadlessGenericDialog
 
centerOfGravity(IterableInterval<T>) - Method in class net.imagej.ops.geom.GeomNamespace
 
centralMoment00(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment00(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment01(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment01(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment02(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment02(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment03(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment03(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment10(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment10(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment11(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment11(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment12(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment12(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment20(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment20(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment21(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment21(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment30(IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centralMoment30(O, IterableInterval<I>) - Method in class net.imagej.ops.imagemoments.ImageMomentsNamespace
 
centroid(LabelRegion<?>) - Method in class net.imagej.ops.geom.GeomNamespace
 
centroid(IterableInterval<?>) - Method in class net.imagej.ops.geom.GeomNamespace
 
centroid(Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
centroid(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
CentroidII - Class in net.imagej.ops.geom
This Op computes the centroid of a IterableRegion (Label).
CentroidII() - Constructor for class net.imagej.ops.geom.CentroidII
 
CentroidLabelRegion - Class in net.imagej.ops.geom
This Op computes the centroid of a IterableRegion (Label).
CentroidLabelRegion() - Constructor for class net.imagej.ops.geom.CentroidLabelRegion
 
CentroidMesh - Class in net.imagej.ops.geom
Generic implementation of geom.centroid.
CentroidMesh() - Constructor for class net.imagej.ops.geom.CentroidMesh
 
CentroidPolygon - Class in net.imagej.ops.geom
Generic implementation of geom.centroid.
CentroidPolygon() - Constructor for class net.imagej.ops.geom.CentroidPolygon
 
Cfloat32() - Constructor for class net.imagej.ops.convert.ConvertImages.Cfloat32
 
cfloat32(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat32(Img<ComplexFloatType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat32(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat32(ComplexFloatType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
Cfloat64() - Constructor for class net.imagej.ops.convert.ConvertImages.Cfloat64
 
cfloat64(IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat64(Img<ComplexDoubleType>, IterableInterval<C>) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat64(C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
cfloat64(ComplexDoubleType, C) - Method in class net.imagej.ops.convert.ConvertNamespace
 
chanClicked() - Method in class net.imagej.plugins.commands.display.HistogramPlot
 
changeInput() - Method in class net.imagej.plugins.commands.binary.Binarize
Gets whether to change input data to contain the output mask.
changePixels() - Method in class net.imagej.plugins.commands.display.interactive.Threshold
 
changes() - Method in class net.imagej.updater.FilesCollection
 
changeUploadPassword(String) - Method in class net.imagej.util.MediaWikiClient
 
CHANNEL - Static variable in class net.imagej.axis.Axes
Identifies the Channel dimensional type, representing a generic channel dimension.
ChannelCollection - Class in net.imagej
A ChannelCollection maintains a list of data values.
ChannelCollection() - Constructor for class net.imagej.ChannelCollection
Constructs a new empty channel collection.
ChannelCollection(List<Double>) - Constructor for class net.imagej.ChannelCollection
Constructs a new channel collection from a list of Double values.
ChannelCollection(ColorRGB) - Constructor for class net.imagej.ChannelCollection
Constructs a ChannelCollection containing the three RGB values of a given color.
ChannelsTool - Class in net.imagej.plugins.commands.display
Plugin that allows toggling between different color modes.
ChannelsTool() - Constructor for class net.imagej.plugins.commands.display.ChannelsTool
 
ChapmanRichardsAxis - Class in net.imagej.axis
Implement an axis that uses Chapman and Richards method of scaling.
ChapmanRichardsAxis(AxisType, String, double, double, double) - Constructor for class net.imagej.axis.ChapmanRichardsAxis
 
characters(char[], int, int) - Method in class net.imagej.updater.POMParser
 
characters(char[], int, int) - Method in class net.imagej.updater.XMLFileReader
 
CharColumn - Class in net.imagej.table
Efficient implementation of Column for char primitives.
CharColumn() - Constructor for class net.imagej.table.CharColumn
 
CharColumn(String) - Constructor for class net.imagej.table.CharColumn
 
CharTable - Interface in net.imagej.table
A table of char values.
check() - Static method in class net.imagej.updater.UpToDate
Check the update status of the current ImageJ installation.
check(File) - Static method in class net.imagej.updater.UpToDate
Check the update status of a given ImageJ installation.
checkboxes - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
checkboxes - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
checkboxIndex - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
checkboxIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
checkConsistency() - Method in class net.imagej.updater.FilesCollection
 
Checker() - Constructor for class net.imagej.omero.OMEROFormat.Checker
 
CheckForUpdates - Class in net.imagej.updater
This plugin checks whether updates are available, and prompts the user to launch the updater if so.
CheckForUpdates() - Constructor for class net.imagej.updater.CheckForUpdates
 
checkIfCanceled() - Method in class net.imagej.ui.swing.updater.ProgressDialog
 
checkInput() - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
checkInput() - Method in interface net.imagej.minmax.MinMaxMethod
Verifies method inputs
checkInput(I, O) - Method in class net.imagej.ops.convert.clip.ClipRealTypes
 
checkInput(I, O) - Method in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
 
checkInput(IterableInterval<I>) - Method in class net.imagej.ops.convert.normalizeScale.NormalizeScaleRealTypes
 
checkInput(I, O) - Method in class net.imagej.ops.convert.RealTypeConverter
Allows the convert pix operation to determine some parameters from the concrete input and output types.
checkInput(IterableInterval<I>) - Method in class net.imagej.ops.convert.RealTypeConverter
If the pixels to be converted stem from an IterableInterval some additionally needed parameters (e.g.
checkInput(I, O) - Method in class net.imagej.ops.convert.scale.ScaleRealTypes
 
checkInput() - Method in interface net.imagej.plugins.commands.imglib.OutputAlgorithm
 
checkInput() - Method in class net.imagej.plugins.commands.rotate.XYFlipper
Makes sure input is okay and creates output image
checksum - Variable in class net.imagej.updater.Checksummer.StringAndFile
 
checksum - Variable in class net.imagej.updater.FileObject.Version
 
Checksummer - Class in net.imagej.updater
A class to checksum and timestamp all the files shown in the Updater's UI.
Checksummer(FilesCollection, Progress) - Constructor for class net.imagej.updater.Checksummer
 
Checksummer.StringAndFile - Class in net.imagej.updater
 
checkWritable() - Method in class net.imagej.ui.swing.updater.UpdaterFrame
 
choiceIndex - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
choiceIndex - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
choiceIndices - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
choiceIndices - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
choices - Variable in class imagej.patcher.HeadlessGenericDialog
Deprecated.
 
choices - Variable in class net.imagej.patcher.HeadlessGenericDialog
 
chooseFile(File, String) - Method in class net.imagej.legacy.ui.LegacyUI
 
chooseLabel - Variable in class net.imagej.ui.swing.updater.UpdaterFrame
 
chooseUpdateSite(FilesCollection, FileObject) - Method in class net.imagej.ui.swing.updater.FileTable
 
chooseUploadSite(String) - Method in class net.imagej.updater.CommandLine
 
Chunk - Interface in net.imagej.ops.thread.chunker
A Chunk of code which can be executed by a ChunkerOp.
chunkable - Variable in class net.imagej.ops.thread.chunker.AbstractChunker
Chunk to be executed
chunker(Chunk, long) - Method in class net.imagej.ops.thread.ThreadNamespace
Executes the "chunker" operation on the given arguments.
ChunkerInterleaved - Class in net.imagej.ops.thread.chunker
Implementation of a ChunkerOp that interleaves the chunks.
ChunkerInterleaved() - Constructor for class net.imagej.ops.thread.chunker.ChunkerInterleaved
 
ChunkerOp - Interface in net.imagej.ops.thread.chunker
A "chunker" operation which executes code across chunks of data using multiple threads.
cInfo() - Method in class net.imagej.ops.OpCandidate
Gets the CommandInfo metadata describing the op to match against.
cInfo() - Method in class net.imagej.ops.OpInfo
Gets the associated CommandInfo metadata.
circularity(Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
circularity(DoubleType, Polygon) - Method in class net.imagej.ops.geom.GeomNamespace
 
Class2JarFilesMap - Class in net.imagej.updater.util
Maps class names to the .jar files containing them.
Class2JarFilesMap(File) - Constructor for class net.imagej.updater.util.Class2JarFilesMap
 
cleanFaceInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
clear() - Method in class net.imagej.display.DefaultWindowService
 
clear() - Method in interface net.imagej.display.WindowService
Clears the list of window files.
clear() - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
clear() - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
clear() - Method in interface net.imagej.table.Table
Removes all data (including row and column headers) from the table.
clearClosed() - Static method in class net.imagej.legacy.LegacyOutputTracker
Clears the list of ImagePluses stored in the current closed list.
clearCustomOptions() - Method in class net.imagej.ui.swing.updater.ViewOptions
 
clearDiff() - Method in class net.imagej.ui.swing.updater.DiffFile
Remove the previous diff output from the DiffView.
clearFacesInFront() - Method in class net.imagej.ops.geom.geom3d.mesh.Vertex
 
clearOutputs() - Static method in class net.imagej.legacy.LegacyOutputTracker
Clears the list of ImagePluses stored in the current output list.
clearStats() - Method in class net.imagej.usage.DefaultUsageService
 
clearStats() - Method in interface net.imagej.usage.UsageService
Clears the table of usage statistics.
clip(O, I) - Method in class net.imagej.ops.convert.ConvertNamespace
 
ClipRealTypes<I extends RealType<I>,O extends RealType<O>> - Class in net.imagej.ops.convert.clip
 
ClipRealTypes() - Constructor for class net.imagej.ops.convert.clip.ClipRealTypes
 
clone() - Method in class net.imagej.ui.swing.overlay.PointFigure
 
clone(Iterable<FileObject>) - Method in class net.imagej.updater.FilesCollection
 
clone() - Method in class net.imagej.updater.UpdateSite
 
close() - Method in class net.imagej.omero.OMEROFormat.Reader
 
close() - Method in class net.imagej.omero.OMEROFormat.Writer
 
close() - Method in class net.imagej.omero.OMEROSession
 
close(RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
close(IterableInterval<T>, RandomAccessibleInterval<T>, List<Shape>) - Method in class net.imagej.ops.morphology.MorphologyNamespace
 
close - Variable in class net.imagej.ui.swing.updater.SitesDialog
 
close() - Method in class net.imagej.updater.DllFile
Closes the underlying RandomAccessFile.
CloseBinaryImage - Class in net.imagej.plugins.commands.binary
Does a morphological close operation on a binary image.
CloseBinaryImage() - Constructor for class net.imagej.plugins.commands.binary.CloseBinaryImage
 
clusterPromenence(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
clusterPromenence(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
clusterShade(IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
clusterShade(DoubleType, IterableInterval<T>, int, int, MatrixOrientation) - Method in class net.imagej.ops.features.haralick.HaralickNamespace
 
coarseness(RandomAccessibleInterval<I>) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
coarseness(O, RandomAccessibleInterval<I>) - Method in class net.imagej.ops.features.tamura2d.TamuraNamespace
 
coeff(int) - Method in class net.imagej.axis.PolynomialAxis
Gets the ith coefficient of the polynomial.
collapse(RandomAccessible<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessible<T> into an ( n -1)-dimensional RandomAccessible< GenericComposite <T>>
collapse(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T> into an ( n -1)-dimensional RandomAccessibleInterval< GenericComposite<T>>
collapseNumeric(RandomAccessible<N>, int) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseNumeric(RandomAccessibleInterval<N>) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends NumericType<T>> into an (n-1)-dimensional RandomAccessibleInterval<NumericComposite<T>>
collapseReal(RandomAccessibleInterval<T>) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessibleInterval<T extends RealType <T>> into an (n-1)-dimensional RandomAccessibleInterval<RealComposite<T>>
collapseReal(RandomAccessible<R>, int) - Method in class net.imagej.ops.transform.TransformNamespace
Collapse the nth dimension of an n -dimensional RandomAccessible<T extends RealType <T>> into an (n-1)-dimensional RandomAccessible <RealComposite<T>>
colon(Object, Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
COLOR - Static variable in class net.imagej.plugins.commands.display.ChannelsTool
 
ColorDisplayCreator - Class in net.imagej.legacy.translate
Creates ImageDisplays from ImagePluses containing color data.
ColorDisplayCreator(Context) - Constructor for class net.imagej.legacy.translate.ColorDisplayCreator
 
ColorImagePlusCreator - Class in net.imagej.legacy.translate
Creates ImagePluses from ImageDisplays containing color merged data.
ColorImagePlusCreator(Context) - Constructor for class net.imagej.legacy.translate.ColorImagePlusCreator
 
ColorMode - Enum in net.imagej.display
The mode to use to display data in a view.
colorOptions(ColorRGB, ColorRGB) - Method in class net.imagej.legacy.OptionsSynchronizer
 
ColorPixelHarmonizer - Class in net.imagej.legacy.translate
Supports bidirectional synchronization between color ImagePluses and merged Datasets.
ColorPixelHarmonizer() - Constructor for class net.imagej.legacy.translate.ColorPixelHarmonizer
 
ColorTableHarmonizer - Class in net.imagej.legacy.translate
This class synchronizes ImageDisplay ColorTables with ImagePlus LUTs.
ColorTableHarmonizer(ImageDisplayService) - Constructor for class net.imagej.legacy.translate.ColorTableHarmonizer
 
ColorTableRemapper - Class in net.imagej.plugins.commands.restructure
Class responsible for simple remapping of color tables from one indexing scheme to another.
ColorTableRemapper(ColorTableRemapper.RemapAlgorithm) - Constructor for class net.imagej.plugins.commands.restructure.ColorTableRemapper
 
ColorTableRemapper.RemapAlgorithm - Interface in net.imagej.plugins.commands.restructure
 
ColorTables - Class in net.imagej.display
Built-in lookup tables.
ColorTableWidget<U> - Interface in net.imagej.widget
Widget interface for color tables.
Column<T> - Interface in net.imagej.table
A column of data of a Table.
CombinedCalibratedRealInterval<A extends CalibratedAxis,S extends CalibratedRealInterval<A>> - Class in net.imagej.interval
A CombinedRealInterval that has calibrated axes.
CombinedCalibratedRealInterval() - Constructor for class net.imagej.interval.CombinedCalibratedRealInterval
 
CombinedRealInterval<A extends TypedAxis,S extends TypedRealInterval<A>> - Class in net.imagej.interval
A CombinedRealInterval is a RealInterval (specifically a TypedRealInterval) which is a union of other TypedRealIntervals.
CombinedRealInterval() - Constructor for class net.imagej.interval.CombinedRealInterval
 
CombinedRealInterval.MinMax - Class in net.imagej.interval
 
CombinedSpace<A extends TypedAxis,S extends TypedSpace<A>> - Class in net.imagej.space
A CombinedSpace is a EuclideanSpace (specifically a TypedSpace) which is a union of other TypedSpaces.
CombinedSpace() - Constructor for class net.imagej.space.CombinedSpace
 
CommandLine - Class in net.imagej.updater
This is the command-line interface into the ImageJ Updater.
CommandLine() - Constructor for class net.imagej.updater.CommandLine
Deprecated.
CommandLine(File, int) - Constructor for class net.imagej.updater.CommandLine
 
CommandLine(File, int, Progress) - Constructor for class net.imagej.updater.CommandLine
 
CommandLine.ConsoleAuthenticator - Class in net.imagej.updater
 
CommandLine.ConsoleUserInterface - Class in net.imagej.updater
 
CommandLine.FileFilter - Class in net.imagej.updater
 
commandService - Variable in class net.imagej.plugins.commands.assign.noisereduce.AbstractNoiseReducerPlugin
 
commandsName() - Method in class net.imagej.legacy.IJ1Helper
 
compactness(Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
compactness(DoubleType, Mesh) - Method in class net.imagej.ops.geom.GeomNamespace
 
ComparableGreaterThan() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThan
 
ComparableGreaterThanOrEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThanOrEqual
 
ComparableLessThan() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThan
 
ComparableLessThanOrEqual() - Constructor for class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThanOrEqual
 
compare(String, String) - Method in class imagej.patcher.LegacyHooks.FatJarNameComparator
Deprecated.
 
compare(String, String) - Method in class net.imagej.patcher.LegacyHooks.FatJarNameComparator
 
compareTo(Data) - Method in class net.imagej.AbstractData
 
compareTo(AxisType) - Method in class net.imagej.axis.DefaultAxisType
 
compareTo(OpInfo) - Method in class net.imagej.ops.OpInfo
 
compareTo(PreciseFixedFloatType) - Method in class net.imagej.types.PreciseFixedFloatType
 
compareTo(UnboundedIntegerType) - Method in class net.imagej.types.UnboundedIntegerType
 
compareTo(FileObject.Version) - Method in class net.imagej.updater.FileObject.Version
 
compareTo(UpdateSite) - Method in class net.imagej.updater.UpdateSite
 
compareTo(Prioritized) - Method in class net.imagej.updater.util.StderrLogService
Deprecated.
 
compatible(IterableInterval<I>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(RandomAccessibleInterval<I>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I1>, IterableInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(RandomAccessibleInterval<I1>, IterableInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(IterableInterval<I1>, RandomAccessibleInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(RandomAccessibleInterval<I1>, IterableInterval<I2>, RandomAccessibleInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
compatible(RandomAccessibleInterval<I1>, RandomAccessibleInterval<I2>, IterableInterval<O>) - Static method in class net.imagej.ops.map.Maps
 
complement(Object) - Method in class net.imagej.ops.eval.OpEvaluator
 
complement(int) - Method in class net.imagej.ops.math.MathNamespace
 
complement(long) - Method in class net.imagej.ops.math.MathNamespace
 
completeMetadataFrom(FileObject) - Method in class net.imagej.updater.FileObject
Fill unset metadata with metadata from another object
complex(ImgPlus<?>) - Method in class net.imagej.DefaultImgPlusService
 
complex(ImgPlus<?>) - Method in interface net.imagej.ImgPlusService
Given an ImgPlus of unknown type this returns a typed ImgPlus of type ComplexType.
complexConjugate() - Method in class net.imagej.types.BigComplex
Does complex conjugation on self.
complexConjugate() - Method in class net.imagej.types.PreciseFixedComplexFloatType
 
complexConjugate() - Method in class net.imagej.types.PreciseFixedFloatType
 
complexConjugate() - Method in class net.imagej.types.UnboundedIntegerType
 
complexConjugateMultiply(IterableInterval<O>, IterableInterval<I>, IterableInterval<I>) - Method in class net.imagej.ops.math.MathNamespace
 
complexConjugateMultiply(C, C, C) - Method in class net.imagej.ops.math.MathNamespace
 
ComplexConjugateMultiplyMap<T extends ComplexType<T>> - Class in net.imagej.ops.math.multiply
 
ComplexConjugateMultiplyMap() - Constructor for class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
 
ComplexConjugateMultiplyOp<T extends ComplexType<T>> - Class in net.imagej.ops.math.multiply
 
ComplexConjugateMultiplyOp() - Constructor for class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
 
complexMerge(TriangularFacet) - Method in class net.imagej.ops.geom.geom3d.mesh.Horizon
Merges another facet to this facet.
ComplexToBit() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToBit
 
ComplexToCfloat32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat32
 
ComplexToCfloat64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat64
 
ComplexToFloat32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToFloat32
 
ComplexToFloat64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToFloat64
 
ComplexToInt16() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt16
 
ComplexToInt32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt32
 
ComplexToInt64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt64
 
ComplexToInt8() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToInt8
 
ComplexToUint12() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint12
 
ComplexToUint128() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint128
 
ComplexToUint16() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint16
 
ComplexToUint2() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint2
 
ComplexToUint32() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint32
 
ComplexToUint4() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint4
 
ComplexToUint64() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint64
 
ComplexToUint8() - Constructor for class net.imagej.ops.convert.ConvertTypes.ComplexToUint8
 
componentHidden(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
componentMoved(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
componentResized(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
componentShown(ComponentEvent) - Method in class net.imagej.ui.swing.viewer.image.JHotDrawImageCanvas
 
COMPOSITE - Static variable in class net.imagej.plugins.commands.display.ChannelsTool
 
CompositeHarmonizer - Class in net.imagej.legacy.translate
This class sets composite channel count for Datasets to match a given ImagePlus.
CompositeHarmonizer() - Constructor for class net.imagej.legacy.translate.CompositeHarmonizer
 
CompositeOverlay - Class in net.imagej.overlay
A composite of one or more overlays.
CompositeOverlay() - Constructor for class net.imagej.overlay.CompositeOverlay
 
CompositeOverlay(Context) - Constructor for class net.imagej.overlay.CompositeOverlay
 
CompositeOverlay(Context, int) - Constructor for class net.imagej.overlay.CompositeOverlay
 
CompositeOverlay.Operation - Enum in net.imagej.overlay
 
compute(int, long, long, T, T) - Method in class net.imagej.minmax.DefaultMinMaxMethod
 
compute(I, O) - Method in class net.imagej.ops.convert.clip.ClipRealTypes
 
compute(C, BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToBit
 
compute(C, ComplexFloatType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat32
 
compute(C, ComplexDoubleType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToCfloat64
 
compute(C, FloatType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat32
 
compute(C, DoubleType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToFloat64
 
compute(C, ShortType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt16
 
compute(C, IntType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt32
 
compute(C, LongType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt64
 
compute(C, ByteType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToInt8
 
compute(C, Unsigned12BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint12
 
compute(C, Unsigned128BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint128
 
compute(C, UnsignedShortType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint16
 
compute(C, Unsigned2BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint2
 
compute(C, UnsignedIntType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint32
 
compute(C, Unsigned4BitType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint4
 
compute(C, UnsignedLongType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint64
 
compute(C, UnsignedByteType) - Method in class net.imagej.ops.convert.ConvertTypes.ComplexToUint8
 
compute(T, BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToBit
 
compute(T, ShortType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt16
 
compute(T, IntType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt32
 
compute(T, LongType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt64
 
compute(T, ByteType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToInt8
 
compute(T, Unsigned12BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint12
 
compute(T, Unsigned128BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint128
 
compute(T, UnsignedShortType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint16
 
compute(T, Unsigned2BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint2
 
compute(T, UnsignedIntType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint32
 
compute(T, Unsigned4BitType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint4
 
compute(T, UnsignedLongType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint64
 
compute(T, UnsignedByteType) - Method in class net.imagej.ops.convert.ConvertTypes.IntegerToUint8
 
compute(I, O) - Method in class net.imagej.ops.convert.copy.CopyRealTypes
 
compute(IterableInterval<I>, IterableInterval<O>) - Method in class net.imagej.ops.convert.imageType.ConvertIIs
 
compute(I, O) - Method in class net.imagej.ops.convert.scale.ScaleRealTypes
 
compute(ArrayImg<T, A>, ArrayImg<T, A>) - Method in class net.imagej.ops.copy.CopyArrayImg
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.copy.CopyII
 
compute(Img<T>, Img<T>) - Method in class net.imagej.ops.copy.CopyImg
 
compute(ImgLabeling<L, T>, ImgLabeling<L, T>) - Method in class net.imagej.ops.copy.CopyImgLabeling
 
compute(LabelingMapping<L>, LabelingMapping<L>) - Method in class net.imagej.ops.copy.CopyLabelingMapping
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.copy.CopyRAI
 
compute(T, T) - Method in class net.imagej.ops.copy.CopyType
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyC
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<O>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyCorrection
computes the correction factor of the Richardson Lucy Algorithm
compute(I, I) - Method in class net.imagej.ops.deconvolve.RichardsonLucyTVUpdate
performs update step of the Richardson Lucy with Total Variation Algorithm
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.deconvolve.RichardsonLucyUpdate
performs update step of the Richardson Lucy Algorithm
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultASM
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultClusterPromenence
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultClusterShade
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultContrast
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultCorrelation
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultDifferenceEntropy
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultDifferenceVariance
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultEntropy
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultICM1
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultICM2
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultIFDM
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultMaxProbability
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumAverage
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumEntropy
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultSumVariance
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultTextureHomogeneity
 
compute(IterableInterval<T>, DoubleType) - Method in class net.imagej.ops.features.haralick.DefaultVariance
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
 
compute(RandomAccessibleInterval<I>, ArrayList<LongType>) - Method in class net.imagej.ops.features.lbp2d.DefaultLBP2D
 
compute(RandomAccessibleInterval<I>, O) - Method in class net.imagej.ops.features.tamura2d.DefaultCoarsenessFeature
 
compute(RandomAccessibleInterval<I>, O) - Method in class net.imagej.ops.features.tamura2d.DefaultContrastFeature
 
compute(RandomAccessibleInterval<I>, O) - Method in class net.imagej.ops.features.tamura2d.DefaultDirectionalityFeature
 
compute(IterableInterval<T>, O) - Method in class net.imagej.ops.features.zernike.DefaultMagnitudeFeature
 
compute(IterableInterval<T>, O) - Method in class net.imagej.ops.features.zernike.DefaultPhaseFeature
 
compute(RandomAccessibleInterval<I>, IterableInterval<O>) - Method in class net.imagej.ops.filter.AbstractCenterAwareNeighborhoodBasedFilter
 
compute(RandomAccessibleInterval<I>, IterableInterval<O>) - Method in class net.imagej.ops.filter.AbstractNeighborhoodBasedFilter
 
compute(I, O) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealType
 
compute(T, T) - Method in class net.imagej.ops.filter.addNoise.AddNoiseRealTypeCFI
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
 
compute(I, O) - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseRealType
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.convolve.ConvolveFFTC
Call the linear filter that is set up to perform convolution
compute(RandomAccessible<I>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveC
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.correlate.CorrelateFFTC
Call the linear filter that is set up to perform correlation
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DefaultDoG
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.dog.DoGSingleSigmas
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<C>) - Method in class net.imagej.ops.filter.fft.FFTMethodsOpC
Computes an ND FFT using FFTMethods
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<K>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.filter.FFTMethodsLinearFFTFilterC
Perform convolution by multiplying the FFTs in the frequency domain
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.DefaultGaussRAI
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.gauss.GaussRAISingleSigma
 
compute(RandomAccessibleInterval<C>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpC
Compute an ND inverse FFT
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractBoundarySizeConvexHull
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractBoxivity
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractConvexity
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractSizeConvexHull
 
compute(I, DoubleType) - Method in class net.imagej.ops.geom.AbstractSolidity
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultCircularity
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultEccentricity
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultElongation
 
compute(Pair<RealLocalizable, RealLocalizable>, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsAngle
 
compute(Pair<RealLocalizable, RealLocalizable>, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameter
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultFeretsDiameterForAngle
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMajorAxis
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretAngle
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMaximumFeretDiameter
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretAngle
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinimumFeretDiameter
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultMinorAxis
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultPerimeterLength
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultRoundness
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultSizePolygon
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountConvexHullPolygon
 
compute(Polygon, DoubleType) - Method in class net.imagej.ops.geom.geom2d.DefaultVerticesCountPolygon
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultCompactness
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSphericity
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultSurfaceArea
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountConvexHullMesh
 
compute(Mesh, DoubleType) - Method in class net.imagej.ops.geom.geom3d.DefaultVerticesCountMesh
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
 
compute(RandomAccessibleInterval<B>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
 
compute(String, IterableInterval<T>) - Method in class net.imagej.ops.image.equation.DefaultEquation
 
compute(Iterable<T>) - Method in class net.imagej.ops.image.fill.DefaultFill
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<RealType<?>>) - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
 
compute(IterableInterval<I>, IterableInterval<O>) - Method in class net.imagej.ops.image.invert.InvertII
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.image.normalize.NormalizeIIComputer
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment00
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment01
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment02
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment03
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment10
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment11
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment12
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment20
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment21
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.DefaultCentralMoment30
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment00
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.centralmoments.IterableCentralMoment11
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment1
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment2
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment3
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment4
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment5
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment6
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.hu.DefaultHuMoment7
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment00
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment01
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment10
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.moments.DefaultMoment11
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment02
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment03
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment11
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment12
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment20
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment21
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.imagemoments.normalizedcentralmoments.DefaultNormalizedCentralMoment30
 
compute(A, C) - Method in interface net.imagej.ops.join.Join2Computers
 
compute(A, BO) - Method in interface net.imagej.ops.join.JoinComputerAndInplace
 
compute(AO, B) - Method in interface net.imagej.ops.join.JoinInplaceAndComputer
 
compute(A, A) - Method in interface net.imagej.ops.join.JoinNComputers
 
compute(RandomAccessibleInterval<T>, ImgLabeling<L, I>) - Method in class net.imagej.ops.labeling.cca.DefaultCCA
 
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.And
 
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThan
 
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableGreaterThanOrEqual
 
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThan
 
compute(I, I, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ComparableLessThanOrEqual
 
compute(T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Not
 
compute(Object, Object, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ObjectsEqual
 
compute(Object, Object, O) - Method in class net.imagej.ops.logic.BooleanTypeLogic.ObjectsNotEqual
 
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Or
 
compute(T, T, T) - Method in class net.imagej.ops.logic.BooleanTypeLogic.Xor
 
compute(I, O) - Method in class net.imagej.ops.logic.Default
 
compute(I, O) - Method in class net.imagej.ops.logic.If
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.And
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
 
compute(I, I) - Method in interface net.imagej.ops.loop.LoopComputer
 
compute(IterableInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToII
 
compute(IterableInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToIIParallel
 
compute(IterableInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAI
 
compute(IterableInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAIParallel
 
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToII
 
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToIIParallel
 
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAI
 
compute(IterableInterval<EI1>, RandomAccessibleInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAIParallel
 
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToII
 
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToIIParallel
 
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAI
 
compute(RandomAccessibleInterval<EI1>, IterableInterval<EI2>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAIParallel
 
compute(RandomAccessibleInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToII
 
compute(RandomAccessibleInterval<EI1>, RandomAccessibleInterval<EI2>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToIIParallel
 
compute(Iterable<EI>, Iterable<EO>) - Method in class net.imagej.ops.map.MapIterableToIterable
 
compute(IterableInterval<O>) - Method in class net.imagej.ops.map.MapNullaryII
 
compute(Iterable<O>) - Method in class net.imagej.ops.map.MapNullaryIterable
 
compute(IterableInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToII
 
compute(IterableInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToIIParallel
 
compute(IterableInterval<EI>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAI
 
compute(IterableInterval<EI>, RandomAccessibleInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAIParallel
 
compute(RandomAccessibleInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToII
 
compute(RandomAccessibleInterval<EI>, IterableInterval<EO>) - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToIIParallel
 
compute(RandomAccessibleInterval<I>, Shape, IterableInterval<O>) - Method in class net.imagej.ops.map.neighborhood.DefaultMapNeighborhood
 
compute(RandomAccessibleInterval<I>, Shape, IterableInterval<O>) - Method in class net.imagej.ops.map.neighborhood.MapNeighborhoodWithCenter
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Add
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.And
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Divide
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Multiply
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Or
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Subtract
 
compute(I1, I2, O) - Method in class net.imagej.ops.math.BinaryRealTypeMath.Xor
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
compute(IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Add
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Divide
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Multiply
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.math.ConstantToIIOutputRAI.Subtract
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
compute(IterableInterval<T>, RandomAccessibleInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
compute(IterableInterval<T>, IterableInterval<T>, IterableInterval<T>) - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
 
compute(T, T, T) - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
 
compute(T) - Method in class net.imagej.ops.math.NullaryNumericTypeMath.Assign
 
compute(T) - Method in class net.imagej.ops.math.NullaryNumericTypeMath.Zero
 
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
compute(T, T, T) - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Abs
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccos
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccosh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccot
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccoth
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccsc
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arccsch
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsec
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsech
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsin
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arcsinh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arctan
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Arctanh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Ceil
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cos
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cosh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Cot
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Coth
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Csc
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Csch
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.CubeRoot
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Exp
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.ExpMinusOne
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Floor
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.GammaConstant
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Invert
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log10
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Log2
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.LogOnePlusX
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.MaxConstant
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.MinConstant
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.NearestInt
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Negate
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.PowerConstant
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomGaussian
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.RandomUniform
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Reciprocal
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Round
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sec
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sech
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Signum
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sin
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sinc
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.SincPi
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sinh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sqr
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Sqrt
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Step
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Tan
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Tanh
 
compute(I, O) - Method in class net.imagej.ops.math.UnaryRealTypeMath.Ulp
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.close.ListClose
 
compute(RandomAccessibleInterval<T>, Shape, IterableInterval<T>) - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.dilate.ListDilate
 
compute(RandomAccessibleInterval<T>, Shape, IterableInterval<T>) - Method in class net.imagej.ops.morphology.erode.DefaultErode
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.erode.ListErode
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.extractHoles.DefaultExtractHolesComputer
 
compute(RandomAccessibleInterval<T>, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.fillHoles.DefaultFillHoles
 
compute(RandomAccessibleInterval<T>, Localizable, RandomAccessibleInterval<T>) - Method in class net.imagej.ops.morphology.floodFill.DefaultFloodFill
 
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.open.ListOpen
 
compute(RandomAccessibleInterval<B>, Boolean, RandomAccessibleInterval<BitType>) - Method in class net.imagej.ops.morphology.outline.Outline
Copies the outlines of the objects in the input interval into the output
compute(RandomAccessibleInterval<T>, List<Shape>, IterableInterval<T>) - Method in class net.imagej.ops.morphology.topHat.ListTopHat
 
compute(RandomAccessibleInterval<I>, RandomAccessibleInterval<O>) - Method in class net.imagej.ops.slice.SliceRAI2RAI
 
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BCViaBC
 
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BHCFViaBC
 
compute(I1, I2, O) - Method in class net.imagej.ops.special.chain.BHCFViaBHCF
 
compute(I, O) - Method in class net.imagej.ops.special.chain.UCViaUC
 
compute(I, O) - Method in class net.imagej.ops.special.chain.UHCFViaUC
 
compute(I, O) - Method in class net.imagej.ops.special.chain.UHCFViaUHCF
 
compute(I1, I2, O) - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
Computes the output given two inputs.
compute(I1, O) - Method in interface net.imagej.ops.special.computer.BinaryComputerOp
 
compute(O) - Method in interface net.imagej.ops.special.computer.NullaryComputerOp
Computes the output value.
compute(I, O) - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
Computes the output given some input.
compute(O) - Method in interface net.imagej.ops.special.computer.UnaryComputerOp
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultGeometricMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultHarmonicMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultKurtosis
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMedian
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMoment1AboutMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMoment2AboutMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMoment3AboutMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultMoment4AboutMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultPercentile
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultQuantile
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSize
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSkewness
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultStandardDeviation
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSum
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSumOfInverses
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSumOfLogs
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultSumOfSquares
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.DefaultVariance
 
compute(IterableInterval<I>, O) - Method in class net.imagej.ops.stats.IISize
 
compute(RectangleNeighborhood<Composite<I>>, DoubleType) - Method in class net.imagej.ops.stats.IntegralMean
 
compute(RectangleNeighborhood<I>, DoubleType) - Method in class net.imagej.ops.stats.IntegralSum
 
compute(RectangleNeighborhood<Composite<I>>, DoubleType) - Method in class net.imagej.ops.stats.IntegralVariance
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableGeometricMean
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableHarmonicMean
 
compute(Iterable<T>, T) - Method in class net.imagej.ops.stats.IterableMax
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableMean
 
compute(Iterable<T>, T) - Method in class net.imagej.ops.stats.IterableMin
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableStandardDeviation
 
compute(Iterable<I>, O) - Method in class net.imagej.ops.stats.IterableVariance
 
compute(I, O) - Method in class net.imagej.ops.threshold.AbstractApplyThresholdIterable
 
compute(Histogram1d<T>, T) - Method in class net.imagej.ops.threshold.AbstractComputeThresholdHistogram
 
compute(Iterable<T>, T, Iterable<BitType>) - Method in class net.imagej.ops.threshold.apply.ApplyConstantThreshold
 
compute(Comparable<? super T>, T, BitType) - Method in class net.imagej.ops.threshold.apply.ApplyThresholdComparable
 
compute(T, T, BitType) - Method in class net.imagej.ops.threshold.apply.ApplyThresholdComparator
 
compute(RandomAccessibleInterval<I>, IterableInterval<BitType>) - Method in class net.imagej.ops.threshold.apply.LocalThresholdIntegral
 
compute(Iterable<T>, T, O) - Method in class net.imagej.ops.threshold.LocalThresholdMethodHistogram
 
compute(RandomAccessibleInterval<B>, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
 
compute(RandomAccessibleInterval<B>, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
 
compute(RandomAccessibleInterval<B>, DoubleType) - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
 
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.DefaultProjectParallel
 
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.ProjectRAIToII
 
compute(RandomAccessibleInterval<T>, IterableInterval<V>) - Method in class net.imagej.ops.transform.project.ProjectRAIToIterableInterval
 
computeBin(Histogram1d<T>) - Method in interface net.imagej.ops.threshold.ComputeThresholdHistogram
Computes the bin number of the threshold cutoff within the histogram.
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.huang.ComputeHuangThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.ij1.ComputeIJ1Threshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.intermodes.ComputeIntermodesThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.isoData.ComputeIsoDataThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.li.ComputeLiThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.maxEntropy.ComputeMaxEntropyThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.maxLikelihood.ComputeMaxLikelihoodThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.mean.ComputeMeanThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.minError.ComputeMinErrorThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.minimum.ComputeMinimumThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.moments.ComputeMomentsThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.otsu.ComputeOtsuThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.percentile.ComputePercentileThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.renyiEntropy.ComputeRenyiEntropyThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.rosin.ComputeRosinThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.shanbhag.ComputeShanbhagThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.triangle.ComputeTriangleThreshold
 
computeBin(Histogram1d<T>) - Method in class net.imagej.ops.threshold.yen.ComputeYenThreshold
 
computeBinomialFactorial(int, int, int, double[][]) - Static method in class net.imagej.ops.features.zernike.helper.ZernikeComputer
 
ComputeFFTMethodsSize - Class in net.imagej.ops.filter.fftSize
Op that calculates FFT sizes.
ComputeFFTMethodsSize() - Constructor for class net.imagej.ops.filter.fftSize.ComputeFFTMethodsSize
 
ComputeFFTSize - Class in net.imagej.ops.filter.fftSize
Op that calculates FFT sizes.
ComputeFFTSize() - Constructor for class net.imagej.ops.filter.fftSize.ComputeFFTSize
 
ComputeHuangThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.huang
Implements Huang's threshold method by Huang & Wang.
ComputeHuangThreshold() - Constructor for class net.imagej.ops.threshold.huang.ComputeHuangThreshold
 
ComputeIJ1Threshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.ij1
Implements the default threshold method from ImageJ 1.x.
ComputeIJ1Threshold() - Constructor for class net.imagej.ops.threshold.ij1.ComputeIJ1Threshold
 
ComputeIntermodesThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.intermodes
Implements an intermodes threshold method by Prewitt & Mendelsohn.
ComputeIntermodesThreshold() - Constructor for class net.imagej.ops.threshold.intermodes.ComputeIntermodesThreshold
 
ComputeIsoDataThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.isoData
Implements an IsoData (intermeans) threshold method by Ridler & Calvard.
ComputeIsoDataThreshold() - Constructor for class net.imagej.ops.threshold.isoData.ComputeIsoDataThreshold
 
ComputeLiThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.li
Implements Li's threshold method by Li & Lee, and Li & Tam, and Sezgin & Sankur.
ComputeLiThreshold() - Constructor for class net.imagej.ops.threshold.li.ComputeLiThreshold
 
ComputeMaxEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.maxEntropy
Implements Kapur-Sahoo-Wong (Maximum Entropy) thresholding method.
ComputeMaxEntropyThreshold() - Constructor for class net.imagej.ops.threshold.maxEntropy.ComputeMaxEntropyThreshold
 
ComputeMaxLikelihoodThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.maxLikelihood
Implements a maximum likelihood threshold method by Dempster, Laird, & Rubin and Glasbey.
ComputeMaxLikelihoodThreshold() - Constructor for class net.imagej.ops.threshold.maxLikelihood.ComputeMaxLikelihoodThreshold
 
ComputeMeanThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.mean
Implements a mean threshold method by Glasbey.
ComputeMeanThreshold() - Constructor for class net.imagej.ops.threshold.mean.ComputeMeanThreshold
 
ComputeMinErrorThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.minError
Implements a minimum error threshold method by Kittler & Illingworth and Glasbey.
ComputeMinErrorThreshold() - Constructor for class net.imagej.ops.threshold.minError.ComputeMinErrorThreshold
 
ComputeMinimumThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.minimum
Implements a minimum threshold method by Prewitt & Mendelsohn.
ComputeMinimumThreshold() - Constructor for class net.imagej.ops.threshold.minimum.ComputeMinimumThreshold
 
computeMinSize(Interval, List<Shape>) - Static method in class net.imagej.ops.morphology.Morphologies
Computes the min coordinate and the size of an Interval after padding with a list of Shapes in a series morphology operations.
ComputeMomentsThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.moments
Implements a moments based threshold method by Tsai.
ComputeMomentsThreshold() - Constructor for class net.imagej.ops.threshold.moments.ComputeMomentsThreshold
 
ComputeOtsuThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.otsu
Implements Otsu's threshold method.
ComputeOtsuThreshold() - Constructor for class net.imagej.ops.threshold.otsu.ComputeOtsuThreshold
 
ComputePercentileThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.percentile
Implements a percentile threshold method by Doyle.
ComputePercentileThreshold() - Constructor for class net.imagej.ops.threshold.percentile.ComputePercentileThreshold
 
computer(OpEnvironment, Class<? extends Op>, IterableInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.IIs
 
computer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
computer(OpEnvironment, Class<? extends Op>, RandomAccessibleInterval<F>, RandomAccessibleInterval<T>, Object...) - Static method in class net.imagej.ops.special.chain.RAIs
 
computer(OpEnvironment, Class<? extends Op>, I, Object...) - Static method in class net.imagej.ops.special.chain.RTs
 
ComputerConverter<A,B> - Class in net.imagej.ops.special.computer
A Converter backed by a UnaryComputerOp.
ComputerConverter(UnaryComputerOp<A, B>) - Constructor for class net.imagej.ops.special.computer.ComputerConverter
 
ComputeRenyiEntropyThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.renyiEntropy
Implements a Renyi entropy based threshold method by Kapur, Sahoo, & Wong.
ComputeRenyiEntropyThreshold() - Constructor for class net.imagej.ops.threshold.renyiEntropy.ComputeRenyiEntropyThreshold
 
ComputeRosinThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.rosin
Implements Rosin's threshold method.
ComputeRosinThreshold() - Constructor for class net.imagej.ops.threshold.rosin.ComputeRosinThreshold
 
Computers - Class in net.imagej.ops.special.computer
Utility class for looking up computer ops in a type-safe way.
ComputeShanbhagThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.shanbhag
Implements Shanbhag's threshold method.
ComputeShanbhagThreshold() - Constructor for class net.imagej.ops.threshold.shanbhag.ComputeShanbhagThreshold
 
ComputeThreshold<I,O> - Interface in net.imagej.ops.threshold
An algorithm for computing a threshold value that divides an object into two classes.
ComputeThresholdHistogram<T extends RealType<T>> - Interface in net.imagej.ops.threshold
Interface for threshold computation algorithms relying on a histogram.
ComputeTriangleThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.triangle
Implements a Triangle algorithm threshold method from Zack, Rogers, & Latt.
ComputeTriangleThreshold() - Constructor for class net.imagej.ops.threshold.triangle.ComputeTriangleThreshold
 
ComputeYenThreshold<T extends RealType<T>> - Class in net.imagej.ops.threshold.yen
Implements Yen's threshold method (Yen, Chang, & Chang, and Sezgin & Sankur).
ComputeYenThreshold() - Constructor for class net.imagej.ops.threshold.yen.ComputeYenThreshold
 
conditional(O, I, O, O) - Method in class net.imagej.ops.logic.LogicNamespace
 
conditional(I, O, O) - Method in class net.imagej.ops.logic.LogicNamespace
 
conditional(O, I, O) - Method in class net.imagej.ops.logic.LogicNamespace
 
ConfidenceIntervalAutoscaleMethod<T extends RealType<T>> - Class in net.imagej.autoscale
Computes a confidence interval containing percentages of the an entire set of values in an IterableInterval.
ConfidenceIntervalAutoscaleMethod() - Constructor for class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
Construct a confidence interval that contains 95% of the data range.
ConfidenceIntervalAutoscaleMethod(double, double) - Constructor for class net.imagej.autoscale.ConfidenceIntervalAutoscaleMethod
Construct a confidence interval with user specified percentages of the data range.
CONFIG_FILE - Static variable in class net.imagej.config.ConfigFileParameters
 
ConfigFileParameters - Class in net.imagej.config
This class reads launcher configuration parameters from a file and allows them to be maintained.
ConfigFileParameters(Context) - Constructor for class net.imagej.config.ConfigFileParameters
Constructs a ConfigFileParameters object.
ConfigFileParameters(Context, File) - Constructor for class net.imagej.config.ConfigFileParameters
Constructs a ConfigFileParameters object.
configure() - Method in class net.imagej.plugins.tools.AbstractColorTool
 
configure() - Method in class net.imagej.plugins.tools.FloodFillTool
Implements the configuration of this tool.
configure() - Method in class net.imagej.plugins.tools.PaintBrushTool
 
configure() - Method in class net.imagej.plugins.tools.PencilTool
 
configure() - Method in class net.imagej.plugins.tools.SprayCanTool
 
Conflict(FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Deprecated.
Conflict(boolean, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Deprecated.
Conflict(boolean, boolean, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Deprecated.
Conflict(boolean, boolean, String, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
Deprecated.
Conflict(Conflicts.Conflict.Severity, FileObject, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
 
Conflict(Conflicts.Conflict.Severity, String, String, Conflicts.Resolution...) - Constructor for class net.imagej.updater.Conflicts.Conflict
 
ConflictDialog - Class in net.imagej.ui.swing.updater
This dialog lists conflicts and let's the user choose how to resolve (or ignore) them.
ConflictDialog(UpdaterFrame, String) - Constructor for class net.imagej.ui.swing.updater.ConflictDialog
 
conflictingVersions(FileObject, File, String) - Method in class net.imagej.updater.Conflicts
 
conflictList - Variable in class net.imagej.ui.swing.updater.ConflictDialog
 
conflicts - Variable in class net.imagej.ui.swing.updater.ResolveDependencies
 
Conflicts - Class in net.imagej.updater
A class describing conflicts in what is selected for updating/uploading.
Conflicts(FilesCollection) - Constructor for class net.imagej.updater.Conflicts
 
conflicts - Variable in class net.imagej.updater.Conflicts
 
conflicts - Variable in class net.imagej.updater.FilesCollection
 
Conflicts.Conflict - Class in net.imagej.updater
An upload or download conflict requiring user resolution.
Conflicts.Conflict.Severity - Enum in net.imagej.updater
 
Conflicts.Notice - Class in net.imagej.updater
Part of the conflict list, but really only a non-critical notice.
Conflicts.Resolution - Class in net.imagej.updater
 
conforms() - Method in interface net.imagej.ops.Contingent
True if the contingency holds; i.e., the current circumstances conform to the contingency's requirements.
conforms() - Method in class net.imagej.ops.copy.CopyArrayImg
 
conforms() - Method in class net.imagej.ops.copy.CopyII
 
conforms() - Method in class net.imagej.ops.copy.CopyImg
 
conforms() - Method in class net.imagej.ops.copy.CopyImgLabeling
 
conforms() - Method in class net.imagej.ops.copy.CopyRAI
 
conforms() - Method in class net.imagej.ops.create.imgPlus.DefaultCreateImgPlus
 
conforms() - Method in class net.imagej.ops.create.kernel.CreateKernel2D
 
conforms() - Method in class net.imagej.ops.features.haralick.AbstractHaralickFeature
 
conforms() - Method in class net.imagej.ops.features.hog.HistogramOfOrientedGradients2D
 
conforms() - Method in class net.imagej.ops.features.lbp2d.AbstractLBP2DFeature
 
conforms() - Method in class net.imagej.ops.features.tamura2d.AbstractTamuraFeature
 
conforms() - Method in class net.imagej.ops.features.zernike.AbstractZernikeFeature
 
conforms() - Method in class net.imagej.ops.filter.addPoissonNoise.AddPoissonNoiseMap
 
conforms() - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveC
 
conforms() - Method in class net.imagej.ops.filter.convolve.ConvolveNaiveF
 
conforms() - Method in class net.imagej.ops.filter.correlate.CorrelateFFTF
 
conforms() - Method in class net.imagej.ops.filter.dog.DoGVaryingSigmas
 
conforms() - Method in class net.imagej.ops.filter.fft.FFTMethodsOpC
Make sure that the input and output size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpC
Make sure that the input size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.ifft.IFFTMethodsOpI
Make sure that the input size conforms to a supported FFT size.
conforms() - Method in class net.imagej.ops.filter.sigma.DefaultSigmaFilter
 
conforms() - Method in class net.imagej.ops.geom.CentroidMesh
 
conforms() - Method in class net.imagej.ops.geom.geom2d.DefaultContour
 
conforms() - Method in class net.imagej.ops.geom.geom2d.DefaultSmallestEnclosingRectangle
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3D
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultInertiaTensor3DMesh
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMainElongation
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMarchingCubes
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultMedianElongation
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultSparenessMesh
 
conforms() - Method in class net.imagej.ops.geom.geom3d.DefaultVolumeMesh
 
conforms() - Method in class net.imagej.ops.geom.geom3d.mesh.AbstractVertexInterpolator
 
conforms() - Method in class net.imagej.ops.geom.geom3d.mesh.DefaultSmallestOrientedBoundingBox
 
conforms() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix2D
 
conforms() - Method in class net.imagej.ops.image.cooccurrenceMatrix.CooccurrenceMatrix3D
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransform
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DefaultDistanceTransformCalibration
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2D
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform2DCalibration
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3D
 
conforms() - Method in class net.imagej.ops.image.distancetransform.DistanceTransform3DCalibration
 
conforms() - Method in class net.imagej.ops.image.integral.AbstractIntegralImg
 
conforms() - Method in class net.imagej.ops.imagemoments.AbstractImageMomentOp
 
conforms() - Method in class net.imagej.ops.labeling.cca.DefaultCCA
 
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.And
 
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.Or
 
conforms() - Method in class net.imagej.ops.logic.IIToIIOutputII.Xor
 
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.And
 
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Or
 
conforms() - Method in class net.imagej.ops.logic.IIToRAIOutputII.Xor
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAI
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndIIToRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAI
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.IIAndRAIToRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAI
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndIIToRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryComputers.RAIAndRAIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAI
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.IIAndRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndII
 
conforms() - Method in class net.imagej.ops.map.MapBinaryInplace1s.RAIAndIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapIIAndIIInplace
 
conforms() - Method in class net.imagej.ops.map.MapIIAndIIInplaceParallel
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToII
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToIIParallel
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAI
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.IIToRAIParallel
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToII
 
conforms() - Method in class net.imagej.ops.map.MapUnaryComputers.RAIToIIParallel
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.AddUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.DivideUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.MultiplyUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImage.SubtractUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.AddUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.DivideUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.MultiplyUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToArrayImageP.SubtractUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Add
 
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Divide
 
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Multiply
 
conforms() - Method in class net.imagej.ops.math.ConstantToIIOutputII.Subtract
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.AddUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.DivideUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.MultiplyUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractDouble
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractFloat
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractShort
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedByte
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedInt
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedLong
 
conforms() - Method in class net.imagej.ops.math.ConstantToPlanarImage.SubtractUnsignedShort
 
conforms() - Method in class net.imagej.ops.math.divide.DivideHandleZeroMap
 
conforms() - Method in class net.imagej.ops.math.divide.DivideHandleZeroMap1
 
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Add
 
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Divide
 
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Multiply
 
conforms() - Method in class net.imagej.ops.math.IIToIIOutputII.Subtract
 
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Add
 
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Divide
 
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Multiply
 
conforms() - Method in class net.imagej.ops.math.IIToRAIOutputII.Subtract
 
conforms() - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyMap
 
conforms() - Method in class net.imagej.ops.math.multiply.ComplexConjugateMultiplyOp
 
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Add
 
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Divide
 
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Multiply
 
conforms() - Method in class net.imagej.ops.math.NumericTypeBinaryMath.Subtract
 
conforms() - Method in class net.imagej.ops.morphology.blackTopHat.ListBlackTopHat
 
conforms() - Method in class net.imagej.ops.morphology.close.ListClose
 
conforms() - Method in class net.imagej.ops.morphology.dilate.DefaultDilate
 
conforms() - Method in class net.imagej.ops.morphology.dilate.ListDilate
 
conforms() - Method in class net.imagej.ops.morphology.erode.DefaultErode
 
conforms() - Method in class net.imagej.ops.morphology.erode.ListErode
 
conforms() - Method in class net.imagej.ops.morphology.open.ListOpen
 
conforms() - Method in class net.imagej.ops.morphology.topHat.ListTopHat
 
conforms() - Method in class net.imagej.ops.threshold.apply.LocalThreshold
 
conforms() - Method in class net.imagej.ops.threshold.localMean.LocalMeanThreshold
 
conforms() - Method in class net.imagej.ops.threshold.localNiblack.LocalNiblackThreshold
 
conforms() - Method in class net.imagej.ops.threshold.localPhansalkar.LocalPhansalkarThreshold
 
conforms() - Method in class net.imagej.ops.threshold.localSauvola.LocalSauvolaThreshold
 
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26N
The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCharacteristic26NFloating
The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.topology.eulerCharacteristic.EulerCorrection
The algorithm is defined only for 3D images
conforms() - Method in class net.imagej.ops.transform.project.DefaultProjectParallel
 
conforms() - Method in class net.imagej.ops.transform.project.ProjectRAIToII
 
conforms() - Method in class net.imagej.ops.transform.project.ProjectRAIToIterableInterval
 
conforms() - Method in class net.imagej.ops.transform.scaleView.DefaultScaleView
 
conforms() - Method in class net.imagej.ops.transform.scaleView.WrappedScaleView
 
conforms() - Method in class net.imagej.ops.transform.subsampleView.SubsampleViewStepsForDims
 
connect(String, URL, String, String...) - Method in class net.imagej.plugins.uploaders.webdav.WebDAVUploader
 
console - Variable in class net.imagej.updater.CommandLine.ConsoleAuthenticator
 
console - Variable in class net.imagej.updater.CommandLine.ConsoleUserInterface
 
ConsoleAuthenticator() - Constructor for class net.imagej.updater.CommandLine.ConsoleAuthenticator
 
ConsoleUserInterface() - Constructor for class net.imagej.updater.CommandLine.ConsoleUserInterface
 
ConstantToArrayImage - Class in net.imagej.ops.math
Wrapper class for binary math operations between constant values and ArrayImgs.
ConstantToArrayImage.AddByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddDouble - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddFloat - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddUnsignedByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddUnsignedInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddUnsignedLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.AddUnsignedShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideDouble - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideFloat - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideUnsignedByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideUnsignedInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideUnsignedLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.DivideUnsignedShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyDouble - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyFloat - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyUnsignedByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyUnsignedInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyUnsignedLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.MultiplyUnsignedShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractDouble - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractFloat - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractShort - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractUnsignedByte - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractUnsignedInt - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractUnsignedLong - Class in net.imagej.ops.math
 
ConstantToArrayImage.SubtractUnsignedShort - Class in net.imagej.ops.math
 
ConstantToArrayImageP - Class in net.imagej.ops.math
Wrapper class for multi-threaded version of binary math operations between constant values and ArrayImgs.
ConstantToArrayImageP.AddByte - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type ByteType
ConstantToArrayImageP.AddDouble - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type DoubleType
ConstantToArrayImageP.AddFloat - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type FloatType
ConstantToArrayImageP.AddInt - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type IntType
ConstantToArrayImageP.AddLong - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type LongType
ConstantToArrayImageP.AddShort - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type ShortType
ConstantToArrayImageP.AddUnsignedByte - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.AddUnsignedInt - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.AddUnsignedLong - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.AddUnsignedShort - Class in net.imagej.ops.math
Multi-threaded version of optimized add constant for ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.DivideByte - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type ByteType
ConstantToArrayImageP.DivideDouble - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type DoubleType
ConstantToArrayImageP.DivideFloat - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type FloatType
ConstantToArrayImageP.DivideInt - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type IntType
ConstantToArrayImageP.DivideLong - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type LongType
ConstantToArrayImageP.DivideShort - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type ShortType
ConstantToArrayImageP.DivideUnsignedByte - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.DivideUnsignedInt - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.DivideUnsignedLong - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.DivideUnsignedShort - Class in net.imagej.ops.math
Multi-threaded version of optimized divide constant from ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.MultiplyByte - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type ByteType
ConstantToArrayImageP.MultiplyDouble - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type DoubleType
ConstantToArrayImageP.MultiplyFloat - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type FloatType
ConstantToArrayImageP.MultiplyInt - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type IntType
ConstantToArrayImageP.MultiplyLong - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type LongType
ConstantToArrayImageP.MultiplyShort - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type ShortType
ConstantToArrayImageP.MultiplyUnsignedByte - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.MultiplyUnsignedInt - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.MultiplyUnsignedLong - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.MultiplyUnsignedShort - Class in net.imagej.ops.math
Multi-threaded version of optimized multiply constant for ArrayImgs of type UnsignedShortType
ConstantToArrayImageP.SubtractByte - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type ByteType
ConstantToArrayImageP.SubtractDouble - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type DoubleType
ConstantToArrayImageP.SubtractFloat - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type FloatType
ConstantToArrayImageP.SubtractInt - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type IntType
ConstantToArrayImageP.SubtractLong - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type LongType
ConstantToArrayImageP.SubtractShort - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type ShortType
ConstantToArrayImageP.SubtractUnsignedByte - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedByteType
ConstantToArrayImageP.SubtractUnsignedInt - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedIntType
ConstantToArrayImageP.SubtractUnsignedLong - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedLongType
ConstantToArrayImageP.SubtractUnsignedShort - Class in net.imagej.ops.math
Multi-threaded version of optimized subtract constant from ArrayImgs of type UnsignedShortType
ConstantToIIOutputII - Class in net.imagej.ops.math
Wrapper class for functional binary math operations between constant values and IterableIntervals, and write the result to IterableIntervals.
ConstantToIIOutputII.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputII.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputII.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputII.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputRAI - Class in net.imagej.ops.math
Wrapper class for functional binary math operations between constant values and IterableIntervals, and write the result to RandomAccessibleIntervals.
ConstantToIIOutputRAI.Add<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputRAI.Divide<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputRAI.Multiply<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToIIOutputRAI.Subtract<T extends NumericType<T>> - Class in net.imagej.ops.math
 
ConstantToPlanarImage - Class in net.imagej.ops.math
Wrapper class for binary math operations between constant values and PlanarImgs.
ConstantToPlanarImage.AddByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddDouble - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddFloat - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddUnsignedByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddUnsignedInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddUnsignedLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.AddUnsignedShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideDouble - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideFloat - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideUnsignedByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideUnsignedInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideUnsignedLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.DivideUnsignedShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyDouble - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyFloat - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyUnsignedByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyUnsignedInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyUnsignedLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.MultiplyUnsignedShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractDouble - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractFloat - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractShort - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractUnsignedByte - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractUnsignedInt - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractUnsignedLong - Class in net.imagej.ops.math
 
ConstantToPlanarImage.SubtractUnsignedShort - Class in net.imagej.ops.math
 
constrain(AxisType, AxisSubrange) - Method in class net.imagej.sampler.SamplingDefinition
Replaces the current constraining definition of a given axis within the current SamplingDefinition with a given subrange.
contains(Object) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
contains(Object) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
contains(Object) - Method in interface net.imagej.table.Table
Gets whether the table contains the given column.
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.GeneralPathFigure
 
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.PointFigure
Checks if a Point2D.Double is near any point contained in the figure
contains(Point2D.Double) - Method in class net.imagej.ui.swing.overlay.ThresholdFigure
 
containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableColumnWrapper
 
containsAll(Collection<?>) - Method in class net.imagej.legacy.convert.ResultsTableWrapper
 
containsAll(Collection<?>) - Method in interface net.imagej.table.Table
Returns true if the table contains all of the columns of the specified collection.
containsClosed(ImagePlus) - Static method in class net.imagej.legacy.LegacyOutputTracker
Return true if the current closed list contains the given ImagePlus .
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Attribute
 
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer
 
containsDebugInfo() - Method in class net.imagej.updater.util.ByteCodeAnalyzer.Method
 
containsDebugInfo(String) - Static method in class net.imagej.updater.util.DependencyAnalyzer
 
containsOutput(ImagePlus) - Static method in class net.imagej.legacy.LegacyOutputTracker
Return true if the current output list contains the given ImagePlus .
context() - Method in class net.imagej.AbstractData
 
context() - Method in class net.imagej.updater.util.StderrLogService
Deprecated.
 
CONTEXT_MENU_ROOT - Static variable in interface net.imagej.display.ImageDisplay
Pop-up context menu root for image displays.
ContextMenuHandler - Class in net.imagej.plugins.tools