public class Watershed3DPlugin extends Object implements ij.plugin.PlugIn
Modifier and Type | Field and Description |
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static double |
hMax
the maximum value for dynamic
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static double |
hMin
the minimum value for dynamic
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static boolean |
use26neighbors
flag to use 26-connectivity
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Constructor and Description |
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Watershed3DPlugin() |
Modifier and Type | Method and Description |
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ij.ImagePlus |
process(ij.ImagePlus input,
ij.ImagePlus mask,
int connectivity,
double hMin,
double hMax)
Apply 3D watershed to a 2D or 3D image (it does work for 2D images too).
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void |
run(String arg)
Plugin run method, to be called from ImageJ.
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public static boolean use26neighbors
public static double hMin
public static double hMax
public ij.ImagePlus process(ij.ImagePlus input, ij.ImagePlus mask, int connectivity, double hMin, double hMax)
input
- the 2D or 3D image (in principle a "gradient" image)mask
- binary mask to restrict region of interestconnectivity
- 6 or 26 voxel connectivityhMin
- minimum grayscale level heighthMax
- maximum grayscale level heightpublic void run(String arg)
run
in interface ij.plugin.PlugIn
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