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A

about() - Method in class org.scijava.app.AbstractApp
 
about() - Method in interface org.scijava.app.App
Displays information about the application.
about() - Method in interface org.scijava.platform.AppEventService
Deprecated.
Use App.about() instead.
about() - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
 
AbstractApp - Class in org.scijava.app
Abstract superclass of App implementations.
AbstractApp() - Constructor for class org.scijava.app.AbstractApp
 
AbstractAutoCompleter - Class in org.scijava.script
Abstract base class for AutoCompleter implementations.
AbstractAutoCompleter(ScriptLanguage) - Constructor for class org.scijava.script.AbstractAutoCompleter
 
AbstractAWTMenuCreator<T> - Class in org.scijava.ui.awt.menu
Populates an AWT menu structure with menu items from a ShadowMenu.
AbstractAWTMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
AbstractBasicDetails - Class in org.scijava
Abstract superclass of BasicDetails implementations.
AbstractBasicDetails() - Constructor for class org.scijava.AbstractBasicDetails
 
AbstractCodeRunner - Class in org.scijava.run
Abstract superclass of CodeRunner implementations.
AbstractCodeRunner() - Constructor for class org.scijava.run.AbstractCodeRunner
 
AbstractConsoleArgument - Class in org.scijava.console
Abstract superclass of ConsoleArgument implementations.
AbstractConsoleArgument() - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsoleArgument(String...) - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsoleArgument(int, String...) - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsolePane<C> - Class in org.scijava.ui.console
Abstract base class of ConsolePane implementations.
AbstractConsolePane(Context) - Constructor for class org.scijava.ui.console.AbstractConsolePane
 
AbstractContextual - Class in org.scijava
Abstract base class for Contextual objects.
AbstractContextual() - Constructor for class org.scijava.AbstractContextual
 
AbstractConverter<I,O> - Class in org.scijava.convert
Abstract superclass for Converter plugins.
AbstractConverter() - Constructor for class org.scijava.convert.AbstractConverter
 
AbstractConvertService - Class in org.scijava.convert
Abstract superclass for ConvertService implementations.
AbstractConvertService() - Constructor for class org.scijava.convert.AbstractConvertService
 
AbstractDataHandle<L extends Location> - Class in org.scijava.io.handle
Abstract base class for DataHandle plugins.
AbstractDataHandle() - Constructor for class org.scijava.io.handle.AbstractDataHandle
 
AbstractDelegateConverter<I,D,O> - Class in org.scijava.convert
Abstract superclass for Converter plugins that delegate to other converters to chain two conversion steps together.
AbstractDelegateConverter() - Constructor for class org.scijava.convert.AbstractDelegateConverter
 
AbstractDisplay<T> - Class in org.scijava.display
Abstract superclass of Display implementations.
AbstractDisplay(Class<T>) - Constructor for class org.scijava.display.AbstractDisplay
 
AbstractDisplayViewer<T> - Class in org.scijava.ui.viewer
The AbstractDisplayViewer provides some basic generic implementations for a DisplayViewer such as storing and providing the display, window and panel for a DisplayViewer.
AbstractDisplayViewer() - Constructor for class org.scijava.ui.viewer.AbstractDisplayViewer
 
AbstractDragAndDropData - Class in org.scijava.ui.dnd
Abstract superclass for DragAndDropData implementations.
AbstractDragAndDropData() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropData
 
AbstractDragAndDropHandler<D> - Class in org.scijava.ui.dnd
Abstract superclass for DragAndDropHandlers.
AbstractDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
AbstractEvaluator - Class in org.scijava.parsington.eval
Base class for Evaluator implementations.
AbstractEvaluator() - Constructor for class org.scijava.parsington.eval.AbstractEvaluator
 
AbstractEvaluator(ExpressionParser) - Constructor for class org.scijava.parsington.eval.AbstractEvaluator
 
AbstractGateway - Class in org.scijava
Abstract superclass for Gateway implementations.
AbstractGateway() - Constructor for class org.scijava.AbstractGateway
 
AbstractGateway(String, Context) - Constructor for class org.scijava.AbstractGateway
 
AbstractHandlerPlugin<D> - Class in org.scijava.plugin
Abstract base class for HandlerPlugin implementations.
AbstractHandlerPlugin() - Constructor for class org.scijava.plugin.AbstractHandlerPlugin
 
AbstractHandlerService<DT,PT extends HandlerPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for HandlerServices.
AbstractHandlerService() - Constructor for class org.scijava.plugin.AbstractHandlerService
 
AbstractHigherOrderHandle<L extends Location> - Class in org.scijava.io.handle
Abstract superclass for DataHandles that operate over other DataHandles.
AbstractHigherOrderHandle(DataHandle<L>) - Constructor for class org.scijava.io.handle.AbstractHigherOrderHandle
 
AbstractIndexWriter - Class in org.scijava.annotations
Writes annotations as JSON-formatted files.
AbstractIndexWriter() - Constructor for class org.scijava.annotations.AbstractIndexWriter
 
AbstractIndexWriter.StreamFactory - Interface in org.scijava.annotations
 
AbstractInputHarvester<P,W> - Class in org.scijava.widget
Abstract superclass for InputHarvesters.
AbstractInputHarvester() - Constructor for class org.scijava.widget.AbstractInputHarvester
 
AbstractInputHarvesterPlugin<P,W> - Class in org.scijava.ui
AbstractInputHarvesterPlugin is an InputHarvester that implements the PreprocessorPlugin interface.
AbstractInputHarvesterPlugin() - Constructor for class org.scijava.ui.AbstractInputHarvesterPlugin
 
AbstractInputPanel<P,W> - Class in org.scijava.widget
Abstract superclass of UI-specific InputPanel implementations.
AbstractInputPanel() - Constructor for class org.scijava.widget.AbstractInputPanel
 
AbstractInputWidget<T,W> - Class in org.scijava.widget
Base class for input widgets.
AbstractInputWidget() - Constructor for class org.scijava.widget.AbstractInputWidget
 
AbstractIOPlugin<D> - Class in org.scijava.io
Abstract base class for IOPlugins.
AbstractIOPlugin() - Constructor for class org.scijava.io.AbstractIOPlugin
 
AbstractLevelsFilter - Class in org.scijava.config.logback
Filters log messages, keeping only certain levels.
AbstractLevelsFilter(Level...) - Constructor for class org.scijava.config.logback.AbstractLevelsFilter
 
AbstractLocation - Class in org.scijava.io.location
Abstract base class for Location implementations.
AbstractLocation() - Constructor for class org.scijava.io.location.AbstractLocation
 
AbstractLocationResolver - Class in org.scijava.io.location
Abstract super class for LocationResolver plugins.
AbstractLocationResolver(String...) - Constructor for class org.scijava.io.location.AbstractLocationResolver
 
AbstractLogService - Class in org.scijava.log
Base class for LogService implementations.
AbstractLogService() - Constructor for class org.scijava.log.AbstractLogService
 
AbstractLogService(Properties) - Constructor for class org.scijava.log.AbstractLogService
 
AbstractMenuCreator<T,M> - Class in org.scijava.menu
Abstract helper class for generating a menu structure.
AbstractMenuCreator() - Constructor for class org.scijava.menu.AbstractMenuCreator
 
AbstractModule - Class in org.scijava.module
Abstract superclass of Module implementations.
AbstractModule() - Constructor for class org.scijava.module.AbstractModule
 
AbstractModuleInfo - Class in org.scijava.module
Abstract superclass of ModuleInfo implementation.
AbstractModuleInfo() - Constructor for class org.scijava.module.AbstractModuleInfo
 
AbstractModuleItem<T> - Class in org.scijava.module
Abstract superclass of ModuleItem implementations.
AbstractModuleItem(ModuleInfo) - Constructor for class org.scijava.module.AbstractModuleItem
 
AbstractMouseAndKeyHandler - Class in org.scijava.ui.behaviour
 
AbstractMouseAndKeyHandler() - Constructor for class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
AbstractMouseAndKeyHandler.BehaviourEntry<T extends Behaviour> - Class in org.scijava.ui.behaviour
 
AbstractNamedAction - Class in org.scijava.ui.behaviour.util
 
AbstractNamedAction(String) - Constructor for class org.scijava.ui.behaviour.util.AbstractNamedAction
 
AbstractNamedBehaviour - Class in org.scijava.ui.behaviour.util
 
AbstractNamedBehaviour(String) - Constructor for class org.scijava.ui.behaviour.util.AbstractNamedBehaviour
 
AbstractOptions<T extends AbstractOptions<T>> - Class in org.scijava.optional
 
AbstractOptions(T) - Constructor for class org.scijava.optional.AbstractOptions
 
AbstractOptions() - Constructor for class org.scijava.optional.AbstractOptions
 
AbstractOptions.AbstractValues - Class in org.scijava.optional
 
AbstractOptions.ValuesToString - Class in org.scijava.optional
 
AbstractPlatform - Class in org.scijava.platform
Abstract superclass of platform implementations.
AbstractPlatform() - Constructor for class org.scijava.platform.AbstractPlatform
 
AbstractPOMHandler - Class in org.scijava.minimaven
Abstract base class for POM SAX handlers.
AbstractPOMHandler() - Constructor for class org.scijava.minimaven.AbstractPOMHandler
 
AbstractPostprocessorPlugin - Class in org.scijava.module.process
Abstract base class for plugin postprocessors.
AbstractPostprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPostprocessorPlugin
 
AbstractPrefService - Class in org.scijava.prefs
Abstract PrefService implementation.
AbstractPrefService() - Constructor for class org.scijava.prefs.AbstractPrefService
 
AbstractPreprocessorPlugin - Class in org.scijava.module.process
Abstract base class for plugin preprocessors.
AbstractPreprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPreprocessorPlugin
 
AbstractPrimitiveArray<ArrayType,BaseType> - Class in org.scijava.util
Abstract base class for primitive-type extensible arrays.
AbstractPrimitiveArray(Class<BaseType>) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by a fixed-size array.
AbstractPrimitiveArray(Class<BaseType>, int) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by a fixed-size array.
AbstractPrimitiveArray(Class<BaseType>, ArrayType) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by the given fixed-size array.
AbstractPTService<PT extends SciJavaPlugin> - Class in org.scijava.plugin
Abstract base class for PTServices.
AbstractPTService() - Constructor for class org.scijava.plugin.AbstractPTService
 
AbstractRemoteLocation - Class in org.scijava.io.location
Abstract base class for RemoteLocation implementations.
AbstractRemoteLocation() - Constructor for class org.scijava.io.location.AbstractRemoteLocation
 
AbstractRichPlugin - Class in org.scijava.plugin
Abstract base class for RichPlugin implementations.
AbstractRichPlugin() - Constructor for class org.scijava.plugin.AbstractRichPlugin
 
AbstractScriptContext - Class in org.scijava.script
A minimal implementation of ScriptContext for use in the AbstractScriptEngine.
AbstractScriptContext() - Constructor for class org.scijava.script.AbstractScriptContext
 
AbstractScriptEngine - Class in org.scijava.script
This class implements dummy versions for ScriptEngine's methods that are not needed by the SciJava scripting framework.
AbstractScriptEngine() - Constructor for class org.scijava.script.AbstractScriptEngine
 
AbstractScriptHeader - Class in org.scijava.script
Abstract superclass for ScriptHeader implementations.
AbstractScriptHeader() - Constructor for class org.scijava.script.AbstractScriptHeader
 
AbstractScriptLanguage - Class in org.scijava.script
Abstract superclass for ScriptLanguage implementations.
AbstractScriptLanguage() - Constructor for class org.scijava.script.AbstractScriptLanguage
 
AbstractSeekableStreamHandle<L extends Location> - Class in org.scijava.io.handle
 
AbstractSeekableStreamHandle() - Constructor for class org.scijava.io.handle.AbstractSeekableStreamHandle
 
AbstractService - Class in org.scijava.service
Abstract superclass of Service implementations.
AbstractService() - Constructor for class org.scijava.service.AbstractService
 
AbstractSingleInputPreprocessor - Class in org.scijava.module.process
Abstract superclass for PreprocessorPlugin implementations that populate singleton inputs.
AbstractSingleInputPreprocessor() - Constructor for class org.scijava.module.process.AbstractSingleInputPreprocessor
 
AbstractSingletonService<PT extends SingletonPlugin> - Class in org.scijava.plugin
Abstract base class for SingletonServices.
AbstractSingletonService() - Constructor for class org.scijava.plugin.AbstractSingletonService
 
AbstractStackEvaluator - Class in org.scijava.parsington.eval
Base class for StackEvaluator implementations.
AbstractStackEvaluator() - Constructor for class org.scijava.parsington.eval.AbstractStackEvaluator
 
AbstractStackEvaluator(ExpressionParser) - Constructor for class org.scijava.parsington.eval.AbstractStackEvaluator
 
AbstractStandardStackEvaluator - Class in org.scijava.parsington.eval
Base class for stack-based evaluators which support the standard operators.
AbstractStandardStackEvaluator() - Constructor for class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
AbstractStandardStackEvaluator(ExpressionParser) - Constructor for class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
AbstractStreamHandle<L extends Location> - Class in org.scijava.io.handle
Abstract base class for StreamHandle implementations.
AbstractStreamHandle() - Constructor for class org.scijava.io.handle.AbstractStreamHandle
 
AbstractSwingMenuCreator<T> - Class in org.scijava.ui.swing.menu
Populates a Swing menu structure with menu items from a ShadowMenu.
AbstractSwingMenuCreator() - Constructor for class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
AbstractSwingUI - Class in org.scijava.ui.swing
Abstract superclass for Swing-based user interfaces.
AbstractSwingUI() - Constructor for class org.scijava.ui.swing.AbstractSwingUI
 
AbstractTable<C extends Column<? extends T>,T> - Class in org.scijava.table
Abstract superclass for column-oriented Table implementations.
AbstractTable() - Constructor for class org.scijava.table.AbstractTable
Creates an empty table.
AbstractTable(int, int) - Constructor for class org.scijava.table.AbstractTable
Creates a table with the given column and row dimensions.
AbstractTableDisplayViewer - Class in org.scijava.ui.viewer.table
Implements the UI-independent elements of a Table viewer.
AbstractTableDisplayViewer() - Constructor for class org.scijava.ui.viewer.table.AbstractTableDisplayViewer
 
AbstractTextDisplayViewer - Class in org.scijava.ui.viewer.text
Implements the UI-independent elements of a text viewer.
AbstractTextDisplayViewer() - Constructor for class org.scijava.ui.viewer.text.AbstractTextDisplayViewer
 
AbstractTextFormat - Class in org.scijava.text
Abstract superclass of TextFormat implementations.
AbstractTextFormat() - Constructor for class org.scijava.text.AbstractTextFormat
 
AbstractTool - Class in org.scijava.tool
Abstract base class for Tool implementations.
AbstractTool() - Constructor for class org.scijava.tool.AbstractTool
 
AbstractTypedIOService<D> - Class in org.scijava.io
Abstract base class for typed IOPlugins.
AbstractTypedIOService() - Constructor for class org.scijava.io.AbstractTypedIOService
 
AbstractTypedPlugin<D> - Class in org.scijava.plugin
Abstract base class for TypedPlugins.
AbstractTypedPlugin() - Constructor for class org.scijava.plugin.AbstractTypedPlugin
 
AbstractTypedService<DT,PT extends TypedPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for TypedServices.
AbstractTypedService() - Constructor for class org.scijava.plugin.AbstractTypedService
 
AbstractUIDetails - Class in org.scijava
Abstract superclass of UIDetails implementations.
AbstractUIDetails() - Constructor for class org.scijava.AbstractUIDetails
 
AbstractUIInputWidget<T,W> - Class in org.scijava.ui
Abstract superclass of InputWidget implementations that belong to a specific UI.
AbstractUIInputWidget() - Constructor for class org.scijava.ui.AbstractUIInputWidget
 
AbstractUserInterface - Class in org.scijava.ui
Abstract superclass for UserInterface implementations.
AbstractUserInterface() - Constructor for class org.scijava.ui.AbstractUserInterface
 
AbstractValues() - Constructor for class org.scijava.optional.AbstractOptions.AbstractValues
 
AbstractWrapperPlugin<D> - Class in org.scijava.plugin
Abstract base class for WrapperPlugins.
AbstractWrapperPlugin() - Constructor for class org.scijava.plugin.AbstractWrapperPlugin
 
AbstractWrapperService<DT,PT extends WrapperPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for WrapperServices.
AbstractWrapperService() - Constructor for class org.scijava.plugin.AbstractWrapperService
 
Accelerator - Class in org.scijava.input
A keyboard shortcut, consisting of a KeyCode plus InputModifiers.
Accelerator(KeyCode, InputModifiers) - Constructor for class org.scijava.input.Accelerator
 
AcceleratorTriplet() - Constructor for class org.scijava.ui.swing.script.TextEditor.AcceleratorTriplet
 
accept(String, Object) - Method in class org.scijava.optional.AbstractOptions.ValuesToString
 
acquireDrawer(Tool) - Method in interface org.scijava.tool.IconService
 
acquireDrawer(Tool) - Method in class org.scijava.ui.swing.SwingIconService
 
actionPerformed(ActionEvent) - Method in class org.scijava.batch.SwingScriptInfoWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.behaviour.util.RunnableAction
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.script.BookmarkDialog
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.script.TextEditor
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
actions(SearchResult) - Method in interface org.scijava.search.SearchService
Gets the suite of available actions for the given search result.
Actions - Class in org.scijava.ui.behaviour.util
Convenience class for adding to a InputMap/ActionMap pair, with InputMap keys that are read from a given InputTriggerConfig.
Actions(KeyStrokeAdder.Factory, String...) - Constructor for class org.scijava.ui.behaviour.util.Actions
Construct with new, empty InputMap and ActionMap.
Actions(InputMap, ActionMap, KeyStrokeAdder.Factory, String...) - Constructor for class org.scijava.ui.behaviour.util.Actions
Construct with specified InputMap and ActionMap.
activate() - Method in interface org.scijava.tool.Tool
Informs the tool that it is now active.
activate() - Method in interface org.scijava.ui.ApplicationFrame
Activate the application frame, bringing it to the front.
activate() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
activate(KeyPressedManager.KeyPressedReceiver) - Method in class org.scijava.ui.behaviour.KeyPressedManager
 
activate() - Method in class org.scijava.ui.swing.search.SwingSearchBar
Called externally to bring the search bar into focus.
activate() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
ACTIVE_BORDER - Static variable in class org.scijava.ui.swing.SwingToolBar
 
ActiveDisplayPreprocessor - Class in org.scijava.display
Assigns the active Display when there is one single unresolved Display parameter.
ActiveDisplayPreprocessor() - Constructor for class org.scijava.display.ActiveDisplayPreprocessor
 
adapt(Object) - Method in class org.scijava.annotations.AbstractIndexWriter
 
adapt(A) - Method in class org.scijava.annotations.AbstractIndexWriter
 
AdaptedScriptEngine - Class in org.scijava.script
Abstract superclass for ScriptEngine implementations which adapt an existing ScriptEngine.
AdaptedScriptEngine(ScriptEngine) - Constructor for class org.scijava.script.AdaptedScriptEngine
 
AdaptedScriptLanguage - Class in org.scijava.script
Abstract superclass for ScriptLanguage implementations which adapt an existing ScriptEngineFactory.
AdaptedScriptLanguage(ScriptEngineFactory) - Constructor for class org.scijava.script.AdaptedScriptLanguage
Creates a new AdaptedScriptLanguage wrapping the given ScriptEngineFactory.
AdaptedScriptLanguage(String) - Constructor for class org.scijava.script.AdaptedScriptLanguage
Creates a new AdaptedScriptLanguage wrapping the ScriptEngineFactory with the given name.
add(Map<String, Object>, String, String) - Method in class org.scijava.annotations.AbstractIndexWriter
 
add(A, String) - Method in class org.scijava.annotations.DirectoryIndexer
 
add(int, T) - Method in class org.scijava.display.AbstractDisplay
 
add(T) - Method in class org.scijava.display.AbstractDisplay
 
add(String) - Method in class org.scijava.io.DefaultRecentFileService
 
add(String) - Method in interface org.scijava.io.RecentFileService
Adds or refreshes a path on the list of recent files.
add(ModuleInfo) - Method in class org.scijava.menu.ShadowMenu
Adds the given module to the menu structure.
add(String) - Method in class org.scijava.minimaven.JarClassLoader
 
add(E, String) - Method in class org.scijava.object.NamedObjectIndex
 
add(E, Class<?>, String, boolean) - Method in class org.scijava.object.NamedObjectIndex
 
add(E) - Method in class org.scijava.object.ObjectIndex
 
add(E, boolean) - Method in class org.scijava.object.ObjectIndex
Adds the object to all compatible type lists.
add(E, Class<?>, boolean) - Method in class org.scijava.object.ObjectIndex
Adds an object to type lists beneath the given type hierarchy.
add(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
add(String, String) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
add(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
add(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
add(float, float) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
add(double, double) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
add(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
add(BigDecimal, BigDecimal) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
add(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.ADD operator.
ADD - Static variable in class org.scijava.parsington.Operators
 
add(ScriptEngineFactory, boolean) - Method in class org.scijava.script.ScriptLanguageIndex
 
add(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex
 
add(C) - Method in class org.scijava.table.AbstractTable
 
add(int, C) - Method in class org.scijava.table.AbstractTable
 
add(C) - Method in interface org.scijava.table.Table
Appends the specified column to the end of the table.
add(int, C) - Method in interface org.scijava.table.Table
Inserts the specified column at the specified position in the table.
add(String, String, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
add(InputTrigger, String, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
add(InputTrigger, String, Collection<String>) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
add(String) - Method in class org.scijava.ui.swing.script.RecentFilesMenuItem
 
add(int, BaseType) - Method in class org.scijava.util.AbstractPrimitiveArray
 
add(int, Boolean) - Method in class org.scijava.util.BoolArray
 
add(int, Byte) - Method in class org.scijava.util.ByteArray
 
add(int, Character) - Method in class org.scijava.util.CharArray
 
add(int, Double) - Method in class org.scijava.util.DoubleArray
 
add(int, Float) - Method in class org.scijava.util.FloatArray
 
add(int, Integer) - Method in class org.scijava.util.IntArray
 
add(T) - Method in class org.scijava.util.LastRecentlyUsed
Add a new newest entry.
add(int, Long) - Method in class org.scijava.util.LongArray
 
add(int, E) - Method in class org.scijava.util.ObjectArray
 
add(int, Short) - Method in class org.scijava.util.ShortArray
 
ADD_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
addAccelerator(JMenuItem, int, int) - Method in class org.scijava.ui.swing.script.TextEditor
 
addAccelerator(JMenuItem, int, int, boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
addAccelerator(RSyntaxTextArea, JMenuItem, int, int) - Method in class org.scijava.ui.swing.script.TextEditor
 
addActionMap(String, ActionMap) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Add as ActionMap with the specified id to the end of the list (overrides maps that were added earlier).
addActionMap(int, String, ActionMap) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Add as ActionMap with the specified id at the specified position in the list (overrides maps at lower positions).
addAlias(String, Class<?>) - Method in class org.scijava.script.DefaultScriptService
 
addAlias(Class<?>) - Method in interface org.scijava.script.ScriptService
TODO
addAlias(String, Class<?>) - Method in interface org.scijava.script.ScriptService
TODO
addAll(int, Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay
 
addAll(Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay
 
addAll(Collection<? extends ModuleInfo>) - Method in class org.scijava.menu.ShadowMenu
Adds the given modules to the menu structure.
addAll(Collection<? extends E>) - Method in class org.scijava.object.ObjectIndex
 
addAll(Collection<? extends E>) - Method in class org.scijava.object.SortedObjectIndex
 
addAll(Collection<? extends C>) - Method in class org.scijava.table.AbstractTable
 
addAll(int, Collection<? extends C>) - Method in class org.scijava.table.AbstractTable
 
addAll(Collection<? extends C>) - Method in interface org.scijava.table.Table
Appends all of the columns in the specified collection to the end of the table, in the order that they are returned by the specified collection's iterator.
addAll(int, Collection<? extends C>) - Method in interface org.scijava.table.Table
Inserts all of the columns in the specified collection into this list at the specified position.
addAll(int, Collection<? extends Boolean>) - Method in class org.scijava.util.BoolArray
 
addAll(int, Collection<? extends Byte>) - Method in class org.scijava.util.ByteArray
 
addAll(int, Collection<? extends Character>) - Method in class org.scijava.util.CharArray
 
addAll(int, Collection<? extends Double>) - Method in class org.scijava.util.DoubleArray
 
addAll(int, Collection<? extends Float>) - Method in class org.scijava.util.FloatArray
 
addAll(int, Collection<? extends Integer>) - Method in class org.scijava.util.IntArray
 
addAll(Collection<? extends T>) - Method in class org.scijava.util.LastRecentlyUsed
 
addAll(int, Collection<? extends Long>) - Method in class org.scijava.util.LongArray
 
addAll(int, Collection<? extends E>) - Method in class org.scijava.util.ObjectArray
 
addAll(int, Collection<? extends Short>) - Method in class org.scijava.util.ShortArray
 
addArgDelimiter() - Method in interface org.scijava.script.CodeGenerator
Deprecated.
Adds delimiter character between arguments (typically a ',').
addArgDelimiter() - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
addArgument(ParameterObject) - Method in interface org.scijava.script.CodeGenerator
Deprecated.
 
addArgument(ParameterObject) - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
addAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
addAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.ADD_ASSIGN operator.
addAutoCompletionListener(AutoCompletionListener) - Static method in class org.scijava.ui.swing.script.autocompletion.JythonAutocompletionProvider
 
addBehaviourMap(String, BehaviourMap) - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings
Add as BehaviourMap with the specified id to the end of the list (overrides maps that were added earlier).
addButton(String, String, ActionListener) - Method in class org.scijava.ui.swing.search.SwingSearchBar
Adds a button to the search pane's toolbar.
addChild(MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
addChildren(List<? extends TreeNode<?>>) - Method in interface org.scijava.util.TreeNode
Adds the given list of children to this node.
addCommand(String, String, String) - Method in class org.scijava.ui.behaviour.io.gui.CommandDescriptionBuilder
 
addConfigChangeListener(VisualEditorPanel.ConfigChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
Deprecated.
Use modelChangedListeners().add(listener) instead.
addDefaultAccelerators(RSyntaxTextArea) - Method in class org.scijava.ui.swing.script.TextEditor
 
addDisplayViewer(DisplayViewer<?>) - Method in class org.scijava.ui.DefaultUIService
 
addDisplayViewer(DisplayViewer<?>) - Method in interface org.scijava.ui.UIService
Registers the given viewer with the service.
addError(String, int, String) - Method in class org.scijava.ui.swing.script.ErrorHandler
 
addEventDispatcher(InternalFrameEventDispatcher) - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class org.scijava.ui.swing.SwingStatusBar
 
addHotKey(int, JComponent, String, Action) - Static method in class org.scijava.ui.swing.StaticSwingUtils
Adds a control hot key to the containing window of a component.
addImport(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
addImport(String) - Method in class org.scijava.ui.swing.script.TokenFunctions
 
addInput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
addInput(String, Class<T>) - Method in interface org.scijava.module.MutableModule
Adds an input to the list.
addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule
Adds an input to the list.
addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo
Adds an input to the list.
addInputMap(String, InputMap, String...) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Adds a InputMap with the specified id to the end of the list (overrides maps that were added earlier).
addInputMap(String, InputMap, Collection<String>) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Adds a InputMap with the specified id to the end of the list (overrides maps that were added earlier).
addInputMap(int, String, InputMap, String...) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Inserts a InputMap with the specified id at the specified position in the list (overrides maps at lower positions).
addInputMap(int, String, InputMap, Collection<String>) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Inserts a InputMap with the specified id at the specified position in the list (overrides maps at lower positions).
addInputTriggerChangeListener(InputTriggerPanelEditor.InputTriggerChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor
 
addInputTriggerMap(String, InputTriggerMap, String...) - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings
Add as InputTriggerMap with the specified id to the end of the list (overrides maps that were added earlier).
addInputTriggerMap(String, InputTriggerMap, Collection<String>) - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings
Add as InputTriggerMap with the specified id to the end of the list (overrides maps that were added earlier).
addLater(LazyObjects<? extends E>) - Method in class org.scijava.object.ObjectIndex
Registers objects which will be created lazily as needed.
addLeafListener(FileSystemTree.LeafListener) - Method in class org.scijava.ui.swing.script.FileSystemTree
 
addLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addLeafToMenu(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addLeafToMenu(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addLeafToTop(ShadowMenu, MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addLeafToTop(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addLeafToTop(ShadowMenu, PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addLeafToTop(ShadowMenu, JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addLeafToTop(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addLeafToTop(ShadowMenu, JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addListener(EventHistoryListener) - Method in class org.scijava.event.DefaultEventHistory
 
addListener(EventHistoryListener) - Method in interface org.scijava.event.EventHistory
Adds an event history listener.
addLogListener(LogListener) - Method in class org.scijava.log.AbstractLogService
 
addLogListener(LogListener) - Method in class org.scijava.log.DefaultLogger
 
addLogListener(LogListener) - Method in interface org.scijava.log.Logger
Adds an item to the list of registered listeners.
addMain(String, String...) - Method in class org.scijava.main.DefaultMainService
 
addMain(String, String...) - Method in interface org.scijava.main.MainService
Registers a main class to be executed by MainService.execMains().
addMap(InputTriggerMap, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder
 
addMap(InputMap, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder
 
addModule(String) - Method in class org.scijava.minimaven.MavenProject
 
addModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService
 
addModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService
Manually registers a module with the module service.
addModuleCalled(String) - Method in interface org.scijava.script.CodeGenerator
Deprecated.
 
addModuleCalled(String) - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
addModules(Collection<? extends ModuleInfo>) - Method in class org.scijava.module.DefaultModuleService
 
addModules(Collection<? extends ModuleInfo>) - Method in interface org.scijava.module.ModuleService
Manually registers a list of modules with the module service.
addMultiProjectRoot(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
addNonLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addNonLeafToMenu(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addNonLeafToMenu(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addNonLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addNonLeafToTop(ShadowMenu, MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addNonLeafToTop(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addNonLeafToTop(ShadowMenu, PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addNonLeafToTop(ShadowMenu, JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addNonLeafToTop(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addNonLeafToTop(ShadowMenu, JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addObject(Object) - Method in interface org.scijava.object.ObjectService
Registers an object with the object service.
addObject(Object, String) - Method in interface org.scijava.object.ObjectService
Registers a named object with the object service.
addObservers(Runnable) - Method in class org.scijava.ui.swing.console.LogRecorder
The Runnable observer will be executed, after every new log message or text recorded.
addOperation(Runnable) - Method in class org.scijava.startup.DefaultStartupService
 
addOperation(Runnable) - Method in interface org.scijava.startup.StartupService
Adds an operation that will run as soon as the application starts up.
addOutput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
addOutput(String, Class<T>) - Method in interface org.scijava.module.MutableModule
Adds an output to the list.
addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule
Adds an output to the list.
addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo
Adds an output to the list.
addOutputListener(OutputListener) - Method in interface org.scijava.console.ConsoleService
Adds a listener for output sent to stdout or stderr.
addOutputListener(OutputListener) - Method in class org.scijava.console.DefaultConsoleService
 
addOutputStream(OutputStream) - Method in class org.scijava.console.MultiOutputStream
Adds an output stream to those receiving this stream's output.
addParameter(String, Class<?>, Object) - Method in class org.scijava.script.InvocationObject
Deprecated.
 
addPlugin(PluginInfo<?>) - Method in class org.scijava.plugin.DefaultPluginService
 
addPlugin(PluginInfo<?>) - Method in interface org.scijava.plugin.PluginService
Manually registers a plugin with the plugin service.
addPlugins(Collection<T>) - Method in class org.scijava.plugin.DefaultPluginService
 
addPlugins(Collection<T>) - Method in interface org.scijava.plugin.PluginService
Manually registers plugins with the plugin service.
addPropertyChangeListener(PropertyChangeListener) - Method in interface org.scijava.ui.Arrangeable
 
addRecursively(List<String>, File, String, File, String, boolean) - Method in class org.scijava.minimaven.MavenProject
 
addResolver(Map<String, Object>) - Method in class org.scijava.grab.DefaultGrabService
 
addResolver(Map<String, Object>) - Method in interface org.scijava.grab.GrabService
 
addRootDirectory(String, boolean) - Method in class org.scijava.ui.swing.script.FileSystemTree
Add a directory as a top-level root.
addScriptDirectory(File) - Method in class org.scijava.script.DefaultScriptService
 
addScriptDirectory(File, MenuPath) - Method in class org.scijava.script.DefaultScriptService
 
addScriptDirectory(File) - Method in interface org.scijava.script.ScriptService
Adds a base directory to scan for scripts.
addScriptDirectory(File, MenuPath) - Method in interface org.scijava.script.ScriptService
Adds a base directory to scan for scripts, placing discovered scripts beneath the given menu path prefix.
addSeparatorToMenu(M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addSeparatorToMenu(Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addSeparatorToMenu(JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addSeparatorToTop(T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addSeparatorToTop(MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addSeparatorToTop(Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addSeparatorToTop(PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addSeparatorToTop(JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addSeparatorToTop(JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addSeparatorToTop(JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addTag(String) - Method in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
addTagSelectionChangeListener(TagPanelEditor.TagSelectionChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
addTemplatePath(String) - Static method in class org.scijava.ui.swing.script.TextEditor
Adds a script template path that will be scanned by future TextEditor instances.
addThread(Thread, TextEditor) - Static method in class org.scijava.ui.swing.script.ExceptionHandler
 
addThreadGroup(ThreadGroup, TextEditor) - Static method in class org.scijava.ui.swing.script.ExceptionHandler
 
addTiming(Object) - Method in class org.scijava.util.Timing
 
addTiming(long, Object) - Method in class org.scijava.util.Timing
 
addToEnd(T) - Method in class org.scijava.util.LastRecentlyUsed
Add a new oldest entry.
addToJarRecursively(JarOutputStream, File, String) - Method in class org.scijava.minimaven.MavenProject
 
addToken(char[], int, int, int, int, boolean) - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Adds the token specified to the current linked list of tokens.
addToken(char[], int, int, int, int, boolean) - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Adds the token specified to the current linked list of tokens.
addToList(E, List<E>, boolean) - Method in class org.scijava.object.ObjectIndex
 
addToList(E, List<E>, boolean) - Method in class org.scijava.object.SortedObjectIndex
 
addToMenu(JMenu, String, int, int) - Method in class org.scijava.ui.swing.script.TextEditor
 
addTopLevelFoldersFrom(String) - Method in class org.scijava.ui.swing.script.FileSystemTree
For restoring state.
addUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService
 
addUI(String, UserInterface) - Method in class org.scijava.ui.DefaultUIService
 
addUI(UserInterface) - Method in interface org.scijava.ui.UIService
Adds the given UI to those managed by the service.
addUI(String, UserInterface) - Method in interface org.scijava.ui.UIService
Adds the given UI to those managed by the service.
addValue(boolean) - Method in class org.scijava.util.BoolArray
 
addValue(int, boolean) - Method in class org.scijava.util.BoolArray
 
addValue(byte) - Method in class org.scijava.util.ByteArray
 
addValue(int, byte) - Method in class org.scijava.util.ByteArray
 
addValue(char) - Method in class org.scijava.util.CharArray
 
addValue(int, char) - Method in class org.scijava.util.CharArray
 
addValue(double) - Method in class org.scijava.util.DoubleArray
 
addValue(int, double) - Method in class org.scijava.util.DoubleArray
 
addValue(float) - Method in class org.scijava.util.FloatArray
 
addValue(int, float) - Method in class org.scijava.util.FloatArray
 
addValue(int) - Method in class org.scijava.util.IntArray
 
addValue(int, int) - Method in class org.scijava.util.IntArray
 
addValue(long) - Method in class org.scijava.util.LongArray
 
addValue(int, long) - Method in class org.scijava.util.LongArray
 
addValue(E) - Method in class org.scijava.util.ObjectArray
 
addValue(int, E) - Method in class org.scijava.util.ObjectArray
 
addValue(short) - Method in class org.scijava.util.ShortArray
 
addValue(int, short) - Method in class org.scijava.util.ShortArray
 
addWidget(InputWidget<?, Panel>) - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
addWidget(InputWidget<?, JPanel>) - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
addWidget(InputWidget<?, W>) - Method in class org.scijava.widget.AbstractInputPanel
 
addWidget(InputWidget<?, W>) - Method in interface org.scijava.widget.InputPanel
Adds a widget to the panel.
adjustmentValueChanged(AdjustmentEvent) - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
adjustmentValueChanged(AdjustmentEvent) - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
advance(long) - Method in interface org.scijava.io.handle.StreamHandle
Increments the handle's offset by the given amount.
alias - Variable in class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion.Import
 
ALICEBLUE - Static variable in class org.scijava.util.Colors
 
allocate(FileChannel, FileChannel.MapMode, long, int) - Method in class org.scijava.io.nio.DefaultNIOService
 
allocate(FileChannel, FileChannel.MapMode, long, int) - Method in interface org.scijava.io.nio.NIOService
Allocates or maps the desired file data into memory.
allocate(long...) - Static method in class org.scijava.util.ArrayUtils
Allocates a 1-dimensional byte array matching the product of the given sizes.
ALT_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
ALT_GRAPH_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
ALTR_TMPDIR - Static variable in class org.scijava.nativelib.BaseJniExtractor
 
alwaysLog(int, Object, Throwable) - Method in class org.scijava.log.AbstractLogService
 
alwaysLog(int, Object, Throwable) - Method in class org.scijava.log.DefaultLogger
 
alwaysLog(int, Object, Throwable) - Method in interface org.scijava.log.Logger
Logs a message with an exception.
ANALYZE_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
ANALYZE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
ANALYZE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
AND_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
andAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
andAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.AND_ASSIGN operator.
annotation() - Method in class org.scijava.annotations.IndexItem
Obtains the annotation values.
AnnotationCombiner - Class in org.scijava.annotations
Combines annotation indexes from all JAR files on the classpath.
AnnotationCombiner() - Constructor for class org.scijava.annotations.AnnotationCombiner
 
AnnotationProcessor - Class in org.scijava.annotations
The annotation processor for use with Java 8 and earlier.
AnnotationProcessor() - Constructor for class org.scijava.annotations.AnnotationProcessor
 
ANTIQUEWHITE - Static variable in class org.scijava.util.Colors
 
app() - Method in class org.scijava.AbstractGateway
 
App - Interface in org.scijava.app
Metadata about a SciJava-based application, used by the AppService.
app() - Method in interface org.scijava.Gateway
Gets this application context's AppService.
AppAboutEvent - Class in org.scijava.platform.event
An event sent when the application is asked to open its about window.
AppAboutEvent() - Constructor for class org.scijava.platform.event.AppAboutEvent
 
append(String) - Method in class org.scijava.display.DefaultTextDisplay
 
append(String) - Method in interface org.scijava.display.TextDisplay
Add a line to the display.
append(StringBuilder, String) - Method in class org.scijava.minimaven.MavenProject
 
append(T) - Method in class org.scijava.optional.AbstractOptions
 
append(OutputEvent) - Method in interface org.scijava.ui.console.ConsolePane
Appends the given output to the console.
append(EventDetails) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Appends the given event details to the text pane.
append(String) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Appends the given HTML text string to the text pane.
append(OutputEvent) - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
append(String[], String) - Method in class org.scijava.ui.swing.script.FileFunctions
 
append(String[], String[]) - Method in class org.scijava.ui.swing.script.FileFunctions
 
append(String) - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
append(String) - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
append(String) - Method in class org.scijava.util.StringMaker
 
append(String, Object) - Method in class org.scijava.util.StringMaker
 
append(String, Object, Object) - Method in class org.scijava.util.StringMaker
 
appendBytes(byte[], int) - Method in interface org.scijava.io.ByteBank
Appends the given bytes to the buffer
appendBytes(byte[], int, int) - Method in interface org.scijava.io.ByteBank
Appends the given bytes to the buffer
appendColumn() - Method in interface org.scijava.table.Table
Appends a column (with no header) to the table.
appendColumn(String) - Method in interface org.scijava.table.Table
Appends a column with the given header to the table.
appendColumns(int) - Method in interface org.scijava.table.Table
Appends a number of columns (with no headers) to the table.
appendColumns(String...) - Method in interface org.scijava.table.Table
Appends a block of columns with the given headers to the table.
appendContents(Collection<URL>, URL) - Static method in class org.scijava.util.FileUtils
Recursively adds contents from the referenced directory to an existing collection.
appendContents(Collection<URL>, URL, boolean, boolean) - Static method in class org.scijava.util.FileUtils
Add contents from the referenced directory to an existing collection.
appendRow() - Method in interface org.scijava.table.Table
Appends a row (with no header) to the table.
appendRow(String) - Method in interface org.scijava.table.Table
Appends a row with the given header to the table.
appendRows(int) - Method in interface org.scijava.table.Table
Appends a block of rows (with no headers) to the table.
appendRows(String...) - Method in interface org.scijava.table.Table
Appends a block of rows with the given headers to the table.
appEvent() - Method in class org.scijava.AbstractGateway
 
appEvent() - Method in interface org.scijava.Gateway
Gets this application context's AppEventService.
AppEventService - Interface in org.scijava.platform
Deprecated.
Use AppService and App instead.
AppFocusEvent - Class in org.scijava.platform.event
An event sent when the application has become the foreground app, or when it has resigned being the foreground app.
AppFocusEvent(boolean) - Constructor for class org.scijava.platform.event.AppFocusEvent
 
appHidden(AppHiddenEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
APPLICATION_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin
Deprecated.
APPLICATION_MENU_ROOT - Static variable in interface org.scijava.UIDetails
The default, application-level menu root.
ApplicationEvent - Class in org.scijava.platform.event
An event indicating an application-level occurrence.
ApplicationEvent() - Constructor for class org.scijava.platform.event.ApplicationEvent
 
ApplicationFrame - Interface in org.scijava.ui
Common interface for top-level application frames.
applySettings() - Method in class org.scijava.ui.swing.console.LogFormatter
 
AppMenusCreatedEvent - Class in org.scijava.platform.event
An event sent when the application has created and populated its menus.
AppMenusCreatedEvent(Object) - Constructor for class org.scijava.platform.event.AppMenusCreatedEvent
 
appMovedToBackground(AppForegroundEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
AppOpenFilesEvent - Class in org.scijava.platform.event
An event sent when the application is asked to re-open itself.
AppOpenFilesEvent(List<File>) - Constructor for class org.scijava.platform.event.AppOpenFilesEvent
 
AppPreferencesEvent - Class in org.scijava.platform.event
An event sent when the application is asked to open its preferences window.
AppPreferencesEvent() - Constructor for class org.scijava.platform.event.AppPreferencesEvent
 
AppPrintEvent - Class in org.scijava.platform.event
An event sent when the app is asked to print a list of files.
AppPrintEvent() - Constructor for class org.scijava.platform.event.AppPrintEvent
 
AppQuitEvent - Class in org.scijava.platform.event
An event sent when the application is asked to quit.
AppQuitEvent() - Constructor for class org.scijava.platform.event.AppQuitEvent
 
appRaisedToForeground(AppForegroundEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
appReOpened(AppReOpenedEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
AppReOpenEvent - Class in org.scijava.platform.event
An event sent when the application is asked to re-open itself.
AppReOpenEvent() - Constructor for class org.scijava.platform.event.AppReOpenEvent
 
AppScreenSleepEvent - Class in org.scijava.platform.event
An event sent when the displays attached to the system enter and exit power save sleep.
AppScreenSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppScreenSleepEvent
 
AppService - Interface in org.scijava.app
Interface for application-level functionality.
AppSleepEvent - Class in org.scijava.platform.event
An event sent when a device enters or exits power save sleep.
AppSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSleepEvent
 
AppSystemSleepEvent - Class in org.scijava.platform.event
An event sent when the system enters and exits power save sleep.
AppSystemSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSystemSleepEvent
 
appUnhidden(AppHiddenEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
AppUserSessionEvent - Class in org.scijava.platform.event
An event sent when the the user session has been changed via Fast User Switching.
AppUserSessionEvent(boolean) - Constructor for class org.scijava.platform.event.AppUserSessionEvent
 
AppUtils - Class in org.scijava.util
Useful methods for obtaining details of the SciJava application environment.
AppVisibleEvent - Class in org.scijava.platform.event
An event sent when the application has been hidden or shown.
AppVisibleEvent(boolean) - Constructor for class org.scijava.platform.event.AppVisibleEvent
 
AQUA - Static variable in class org.scijava.util.Colors
 
AQUAMARINE - Static variable in class org.scijava.util.Colors
 
AREA_STYLE - Static variable in interface org.scijava.widget.TextWidget
Widget style for text areas.
ARGBPlane - Class in org.scijava.ui
Represents a plane of ARGB pixel data.
ARGBPlane(int, int, int[]) - Constructor for class org.scijava.ui.ARGBPlane
 
ARGBPlane(int, int) - Constructor for class org.scijava.ui.ARGBPlane
 
args() - Method in interface org.scijava.main.MainService.Main
Gets the arguments to pass to the class's main method.
args(Type, Class<?>) - Static method in class org.scijava.util.Types
Gets the type arguments of a class/interface based on a subtype.
args(Class<?>, ParameterizedType) - Static method in class org.scijava.util.Types
Tries to determine the type arguments of a class/interface based on a super parameterized type's type arguments.
Arrangeable - Interface in org.scijava.ui
Arrangeable.
Arrangeable.Arrangement - Enum in org.scijava.ui
 
arrangeFramesHorizontally() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
Arranges the frames as efficiently as possibly with preference for keeping horizontal size maximal.
arrangeFramesVertically() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
Arranges the frames as efficiently as possibly with preference for keeping vertical size maximal.
array(T...) - Static method in class org.scijava.util.ArrayUtils
Creates an array of the given type, containing the specified values.
array(Class<?>) - Static method in class org.scijava.util.Types
Gets the array class corresponding to the given element type.
array(Class<?>, int) - Static method in class org.scijava.util.Types
Gets the array class corresponding to the given element type and dimensionality.
array(Type) - Static method in class org.scijava.util.Types
Gets the array type—which might be a Class or a GenericArrayType depending on the argument—corresponding to the given element type.
arrayContainsString(String[], String) - Method in class org.scijava.minimaven.MavenProject
 
ArrayConverters - Class in org.scijava.convert
Container class for all desired combinations of PrimitiveArrayUnwrapper and PrimitiveArrayWrapper implementations.
ArrayConverters() - Constructor for class org.scijava.convert.ArrayConverters
 
ArrayConverters.BoolArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.BoolArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.ByteArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.ByteArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.CharArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.CharArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.DoubleArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.DoubleArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.FloatArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.FloatArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.IntArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.IntArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.LongArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.LongArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.ShortArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.ShortArrayWrapper - Class in org.scijava.convert
 
ArrayUtils - Class in org.scijava.util
Utility class for working with arrays, particularly arrays of primitives.
artifactId - Variable in class org.scijava.minimaven.Coordinate
 
as(Object, Class<T>) - Method in class org.scijava.script.process.DirectiveScriptProcessor
Coerces some object into another object of the given type.
asBigDecimal(Number) - Static method in class org.scijava.util.NumberUtils
 
asBigInteger(Number) - Static method in class org.scijava.util.NumberUtils
 
asHTML(String) - Method in class org.scijava.plugins.text.markdown.MarkdownTextFormat
 
asHTML(String) - Method in class org.scijava.plugins.text.plain.PlainTextFormat
 
asHTML(File) - Method in class org.scijava.text.DefaultTextService
 
asHTML(String) - Method in interface org.scijava.text.TextFormat
Expresses the given text string in HTML format.
asHTML(File) - Method in interface org.scijava.text.TextService
Expresses the given text string as HTML.
asList(Object, Class<T>) - Method in class org.scijava.script.process.DirectiveScriptProcessor
Coerces some object into a list of objects of the given type.
asMap() - Method in interface org.scijava.parse.Items
Gets the parsed items as a map.
assertConsistency() - Method in class org.scijava.util.LastRecentlyUsed
 
assertThat(boolean, String) - Method in class org.scijava.parsington.Position
Throws IllegalStateException if something goes wrong.
assign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
assign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.ASSIGN operator.
ASSIGN - Static variable in class org.scijava.parsington.Operators
 
assignProperties(MenuEntry) - Method in class org.scijava.MenuEntry
Updates any default properties of this menu entry to match those of the given menu entry.
asType(ModuleItem<?>, Class<T>) - Method in class org.scijava.command.InteractiveCommand
 
attach(Object) - Method in class org.scijava.log.LogMessage
Attach object to this log message.
attachments() - Method in class org.scijava.log.LogMessage
Collection of objects that have been attached to this message with LogMessage.attach(Object).
Attr - Annotation Type in org.scijava.plugin
A name/value attribute pair, used to extend the @Plugin annotation.
AUTO_DOWNLOAD_SETTING - Static variable in class org.scijava.grab.DefaultGrabService
 
AUTO_IMPORT_PREFS - Static variable in class org.scijava.ui.swing.script.TextEditor
 
autocomplete(String, int, ScriptEngine) - Method in class org.scijava.script.AbstractAutoCompleter
 
autocomplete(String, ScriptEngine) - Method in interface org.scijava.script.AutoCompleter
 
autocomplete(String, int, ScriptEngine) - Method in interface org.scijava.script.AutoCompleter
 
AutoCompleter - Interface in org.scijava.script
Helper for generating autocomplete suggestions for code fragments.
AutoCompletionListener - Interface in org.scijava.ui.swing.script.autocompletion
 
AutoCompletionResult - Class in org.scijava.script
Data structure housing suggestions given by AutoCompleter helpers.
AutoCompletionResult(List<String>) - Constructor for class org.scijava.script.AutoCompletionResult
 
AutoCompletionResult(List<String>, int) - Constructor for class org.scijava.script.AutoCompletionResult
 
AutoImporter - Interface in org.scijava.ui.swing.script
Base interface for auto-importer plugins.
available(long) - Method in interface org.scijava.io.handle.DataHandle
Gets the number of bytes which can be read from, or written to, the data handle, bounded by the specified number of bytes.
available() - Method in class org.scijava.io.handle.DataHandleInputStream
 
AWTApplicationFrame - Class in org.scijava.ui.awt
AWT implementation of ApplicationFrame.
AWTApplicationFrame(String) - Constructor for class org.scijava.ui.awt.AWTApplicationFrame
 
AWTButtonWidget - Class in org.scijava.ui.awt.widget
An AWT widget that displays a button and invokes the callback of a parameter when the button is clicked.
AWTButtonWidget() - Constructor for class org.scijava.ui.awt.widget.AWTButtonWidget
 
AWTChoiceWidget - Class in org.scijava.ui.awt.widget
AWT implementation of multiple choice selector widget.
AWTChoiceWidget() - Constructor for class org.scijava.ui.awt.widget.AWTChoiceWidget
 
AWTClipboard - Class in org.scijava.ui.awt
AWT implementation of the SystemClipboard interface
AWTClipboard() - Constructor for class org.scijava.ui.awt.AWTClipboard
 
AWTColors - Class in org.scijava.ui.awt
Translates ImageJ ColorRGBs into AWT Colors.
AWTCursors - Class in org.scijava.ui.awt
Translates ImageJ MouseCursors into AWT Cursors.
AWTDragAndDropData - Class in org.scijava.ui.awt
AWT implementation of DragAndDropData.
AWTDragAndDropData(Context, Transferable) - Constructor for class org.scijava.ui.awt.AWTDragAndDropData
 
AWTDropTargetEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT DropTargetEvents as ImageJ DragAndDropEvent s.
AWTDropTargetEventDispatcher(Display<?>, EventService) - Constructor for class org.scijava.ui.awt.AWTDropTargetEventDispatcher
Creates an AWT drag-and-drop event dispatcher for the given display.
AWTFileWidget - Class in org.scijava.ui.awt.widget
AWT implementation of file selector widget.
AWTFileWidget() - Constructor for class org.scijava.ui.awt.widget.AWTFileWidget
 
AWTImageTools - Class in org.scijava.ui.awt
Convenience methods for working with AWT Images.
AWTInputEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT InputEvents as ImageJ InputEvents, translating KeyEvents into KyEvents, and MouseEvents into MsEvents.
AWTInputEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.awt.AWTInputEventDispatcher
Creates an AWT input event dispatcher for the given display.
AWTInputEventDispatcher(Display<?>, EventService) - Constructor for class org.scijava.ui.awt.AWTInputEventDispatcher
Creates an AWT input event dispatcher for the given display.
AWTInputHarvester - Class in org.scijava.ui.awt.widget
AWTInputHarvester is an InputHarvester that collects input parameter values from the user using an AWTInputPanel dialog box.
AWTInputHarvester() - Constructor for class org.scijava.ui.awt.widget.AWTInputHarvester
 
AWTInputPanel - Class in org.scijava.ui.awt.widget
AWT implementation of InputPanel.
AWTInputPanel() - Constructor for class org.scijava.ui.awt.widget.AWTInputPanel
 
AWTInputWidget<T> - Class in org.scijava.ui.awt.widget
Common superclass for AWT-based input widgets.
AWTInputWidget() - Constructor for class org.scijava.ui.awt.widget.AWTInputWidget
 
AWTMenuBarCreator - Class in org.scijava.ui.awt.menu
Populates an AWT MenuBar with menu items from a ShadowMenu.
AWTMenuBarCreator() - Constructor for class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
AWTMenuCreator - Class in org.scijava.ui.awt.menu
Populates an AWT Menu with menu items from a ShadowMenu.
AWTMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AWTMenuCreator
 
AWTMessageWidget - Class in org.scijava.ui.awt.widget
AWT implementation of message widget.
AWTMessageWidget() - Constructor for class org.scijava.ui.awt.widget.AWTMessageWidget
 
AWTNumberWidget - Class in org.scijava.ui.awt.widget
AWT implementation of number chooser widget.
AWTNumberWidget() - Constructor for class org.scijava.ui.awt.widget.AWTNumberWidget
 
AWTObjectWidget - Class in org.scijava.ui.awt.widget
AWT implementation of object selector widget.
AWTObjectWidget() - Constructor for class org.scijava.ui.awt.widget.AWTObjectWidget
 
AWTPopupMenuCreator - Class in org.scijava.ui.awt.menu
Populates an AWT PopupMenu with menu items from a ShadowMenu.
AWTPopupMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
AWTStatusBar - Class in org.scijava.ui.awt
AWT implementation of StatusBar.
AWTStatusBar(Context) - Constructor for class org.scijava.ui.awt.AWTStatusBar
 
AWTTextWidget - Class in org.scijava.ui.awt.widget
AWT implementation of text field widget.
AWTTextWidget() - Constructor for class org.scijava.ui.awt.widget.AWTTextWidget
 
AWTToggleWidget - Class in org.scijava.ui.awt.widget
AWT implementation of boolean toggle widget.
AWTToggleWidget() - Constructor for class org.scijava.ui.awt.widget.AWTToggleWidget
 
AWTToolBar - Class in org.scijava.ui.awt
Button bar with selectable tools, similar to ImageJ 1.x.
AWTToolBar(Context) - Constructor for class org.scijava.ui.awt.AWTToolBar
 
AWTUI - Class in org.scijava.ui.awt
AWT-based user interface for ImageJ.
AWTUI() - Constructor for class org.scijava.ui.awt.AWTUI
 
AWTWindowEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT WindowEvents as ImageJ WinEvents.
AWTWindowEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.awt.AWTWindowEventDispatcher
Creates an AWT window event dispatcher for the given display.
AWTWindowEventDispatcher(EventService) - Constructor for class org.scijava.ui.awt.AWTWindowEventDispatcher
Creates an AWT window event dispatcher for a null display, using the given event service.
AWTWindows - Class in org.scijava.ui.awt
Utility methods for working with AWT Windows.
AZURE - Static variable in class org.scijava.util.Colors
 

B

base64(byte[]) - Static method in class org.scijava.util.DigestUtils
Converts the given byte array to a base64 string.
BaseJniExtractor - Class in org.scijava.nativelib
 
BaseJniExtractor() - Constructor for class org.scijava.nativelib.BaseJniExtractor
 
BaseJniExtractor(Class<?>) - Constructor for class org.scijava.nativelib.BaseJniExtractor
 
BasicDetails - Interface in org.scijava
An interface defining basic characteristics including name, label, description, and a table of key/value pairs.
basicRangeCheck(long, long) - Method in interface org.scijava.io.ByteBank
Ensures that the requested range satisfies basic sanity criteria.
batchableInputs(ModuleInfo) - Method in interface org.scijava.batch.BatchService
A collection of input ModuleItems of the given ModuleInfo that are supported (i.e.
BatchInput - Class in org.scijava.batch.input
Currency for use with BatchInputProvider methods
BatchInput(Class<?>, ModuleItem<?>) - Constructor for class org.scijava.batch.input.BatchInput
 
BatchInput(Type, ModuleItem<?>) - Constructor for class org.scijava.batch.input.BatchInput
 
BatchInputProvider<I> - Interface in org.scijava.batch.input
 
BatchModuleSearchActionFactory - Class in org.scijava.batch
Search action for executing a SciJava module in batch mode.
BatchModuleSearchActionFactory() - Constructor for class org.scijava.batch.BatchModuleSearchActionFactory
 
BatchService - Interface in org.scijava.batch
 
BeanshellBindings - Class in org.scijava.plugins.scripting.beanshell
Local variables for Beanshell interpreters.
BeanshellBindings(Interpreter) - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
BeanshellHighlighter - Class in org.scijava.ui.swing.script.highliters
SyntaxHighliter for "beanshell".
BeanshellHighlighter() - Constructor for class org.scijava.ui.swing.script.highliters.BeanshellHighlighter
 
BeanshellScriptEngine - Class in org.scijava.plugins.scripting.beanshell
BeanShell support for SciJava.
BeanshellScriptEngine() - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
BeanshellScriptLanguage - Class in org.scijava.plugins.scripting.beanshell
An adapter of the BeanShell interpreter to the SciJava scripting interface.
BeanshellScriptLanguage() - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
begin(ScriptInfo) - Method in class org.scijava.grab.script.process.GrabScriptProcessor
 
begin(ScriptInfo) - Method in class org.scijava.script.process.DirectiveScriptProcessor
 
begin(ScriptInfo) - Method in class org.scijava.script.process.ParameterScriptProcessor
 
begin(ScriptInfo) - Method in interface org.scijava.script.process.ScriptProcessor
 
begin(ScriptInfo) - Method in class org.scijava.script.process.ShebangScriptProcessor
 
behaviour() - Method in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler.BehaviourEntry
 
Behaviour - Interface in org.scijava.ui.behaviour
 
behaviour(Behaviour, String, String...) - Method in class org.scijava.ui.behaviour.util.Behaviours
 
BehaviourEntry(InputTrigger, T) - Constructor for class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler.BehaviourEntry
 
BehaviourMap - Class in org.scijava.ui.behaviour
Maps String keys to Behaviours.
BehaviourMap() - Constructor for class org.scijava.ui.behaviour.BehaviourMap
Creates an BehaviourMap with no parent and no mappings.
Behaviours - Class in org.scijava.ui.behaviour.util
Convenience class for adding to a InputTriggerMap/BehaviourMap pair, with InputTriggerMap triggers that are read from a given InputTriggerConfig.
Behaviours(InputTriggerAdder.Factory, String...) - Constructor for class org.scijava.ui.behaviour.util.Behaviours
Construct with new, empty InputTriggerMap and BehaviourMap.
Behaviours(InputTriggerMap, BehaviourMap, InputTriggerAdder.Factory, String...) - Constructor for class org.scijava.ui.behaviour.util.Behaviours
Construct with the specified InputTriggerMap and BehaviourMap.
BEIGE - Static variable in class org.scijava.util.Colors
 
best(String) - Static method in class org.scijava.util.DigestUtils
Gets the given string's best available hash.
best(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the given byte array's best available hash.
bestBase64(String) - Static method in class org.scijava.util.DigestUtils
Gets the base64 string of the given string's best available hash.
bestBase64(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the base64 string of the given byte array's best available hash.
bestHex(String) - Static method in class org.scijava.util.DigestUtils
Gets the hex string of the given string's best available hash.
bestHex(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the hex string of the given byte array's best available hash.
BigIntegerToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter
 
BISESearcher - Class in org.scijava.search.web
A searcher for the Bio-Imaging Search Engine.
BISESearcher() - Constructor for class org.scijava.search.web.BISESearcher
 
BISQUE - Static variable in class org.scijava.util.Colors
 
BITWISE_AND - Static variable in class org.scijava.parsington.Operators
 
BITWISE_OR - Static variable in class org.scijava.parsington.Operators
 
bitwiseAnd(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
bitwiseAnd(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
bitwiseAnd(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
bitwiseAnd(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
bitwiseAnd(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.BITWISE_AND operator.
bitwiseOr(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
bitwiseOr(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
bitwiseOr(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
bitwiseOr(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
bitwiseOr(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.BITWISE_OR operator.
BLACK - Static variable in class org.scijava.util.Colors
 
BLANCHEDALMOND - Static variable in class org.scijava.util.Colors
 
BLUE - Static variable in class org.scijava.util.Colors
 
BLUEVIOLET - Static variable in class org.scijava.util.Colors
 
Bookmark - Class in org.scijava.ui.swing.script
A "bookmark" is a stored location (line, file) in the text editor.
Bookmark(TextEditorTab, GutterIconInfo) - Constructor for class org.scijava.ui.swing.script.Bookmark
 
BookmarkDialog - Class in org.scijava.ui.swing.script
TODO
BookmarkDialog(Frame, Vector<Bookmark>) - Constructor for class org.scijava.ui.swing.script.BookmarkDialog
 
BoolArray - Class in org.scijava.util
An extensible array of boolean elements.
BoolArray() - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by a fixed-size array.
BoolArray(int) - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by a fixed-size array.
BoolArray(boolean[]) - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by the given fixed-size array.
BoolArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper
 
BoolArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayWrapper
 
BoolColumn - Class in org.scijava.table
Efficient implementation of Column for boolean primitives.
BoolColumn() - Constructor for class org.scijava.table.BoolColumn
 
BoolColumn(String) - Constructor for class org.scijava.table.BoolColumn
 
BoolTable - Interface in org.scijava.table
A table of boolean values.
box(Class<T>) - Static method in class org.scijava.util.Types
Returns the non-primitive Class closest to the given type.
braces(Object[]) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
braces(Object[]) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.BRACES operator.
BRACES - Static variable in class org.scijava.parsington.Operators
 
brackets(Object[]) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
brackets(Object[]) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.BRACKETS operator.
BRACKETS - Static variable in class org.scijava.parsington.Operators
 
BROWN - Static variable in class org.scijava.util.Colors
 
BrowsableLocation - Interface in org.scijava.io.location
A Location that offers methods to browse other locations relative to it.
buffer - Variable in class org.scijava.minimaven.ReadInto
 
buffer - Variable in class org.scijava.util.LineOutputStream
 
buffer - Variable in class org.scijava.util.ReadInto
 
build() - Method in class org.scijava.minimaven.MavenProject
Compiles the project.
build(boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
build(boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
build(boolean, boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
buildAndInstall() - Method in class org.scijava.minimaven.MavenProject
Builds the artifact and installs it and its dependencies into ${imagej.app.directory}.
buildAndInstall(File) - Method in class org.scijava.minimaven.MavenProject
Builds the project an its dependencies, and installs them into the given ImageJ.app/ directory structure.
buildAndInstall(File, boolean) - Method in class org.scijava.minimaven.MavenProject
Builds the project an its dependencies, and installs them into the given ImageJ.app/ directory structure.
BuildEnvironment - Class in org.scijava.minimaven
The build environment of MiniMaven.
BuildEnvironment(PrintStream, boolean, boolean, boolean) - Constructor for class org.scijava.minimaven.BuildEnvironment
 
buildFromSource - Variable in class org.scijava.minimaven.MavenProject
 
buildJar() - Method in class org.scijava.minimaven.MavenProject
Builds the artifact.
buildNumber - Variable in class org.scijava.minimaven.SnapshotPOMHandler
 
buildPanel(InputPanel<P, W>, Module) - Method in class org.scijava.widget.AbstractInputHarvester
 
buildPanel(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester
Populates the given InputPanel with widgets corresponding to the given Module instance.
built - Variable in class org.scijava.minimaven.MavenProject
 
BURLYWOOD - Static variable in class org.scijava.util.Colors
 
Button - Interface in org.scijava.widget
A interface used for marking input fields of plugin parameter dialogs as button fields.
BUTTON1_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
BUTTON2_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
BUTTON3_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
buttonClicks - Variable in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
buttonDrags - Variable in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
buttons() - Method in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler.BehaviourEntry
 
ButtonWidget<U> - Interface in org.scijava.widget
Widget interface for buttons.
ByteArray - Class in org.scijava.util
An extensible array of byte elements.
ByteArray() - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by a fixed-size array.
ByteArray(int) - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by a fixed-size array.
ByteArray(byte[]) - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by the given fixed-size array.
ByteArrayByteBank - Class in org.scijava.io
ByteBank implementation backed by a ByteArray.
ByteArrayByteBank() - Constructor for class org.scijava.io.ByteArrayByteBank
ByteArrayByteBank(int) - Constructor for class org.scijava.io.ByteArrayByteBank
Creates a ByteArrayByteBank with the specified initial capacity.
ByteArrayByteBank(byte[]) - Constructor for class org.scijava.io.ByteArrayByteBank
Creates a ByteArrayByteBank that wraps the provided byte array.
ByteArrayByteBank(ByteArray) - Constructor for class org.scijava.io.ByteArrayByteBank
Creates a ByteArrayByteBank that wraps the specified ByteArray.
ByteArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper
 
ByteArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayWrapper
 
ByteBank - Interface in org.scijava.io
A ByteBank is a self-growing buffer over arbitrary bytes.
ByteBufferByteBank - Class in org.scijava.io.nio
A ByteBank backed by a ByteBuffer.
ByteBufferByteBank() - Constructor for class org.scijava.io.nio.ByteBufferByteBank
 
ByteBufferByteBank(Function<Integer, ByteBuffer>) - Constructor for class org.scijava.io.nio.ByteBufferByteBank
 
ByteBufferByteBank(Function<Integer, ByteBuffer>, int) - Constructor for class org.scijava.io.nio.ByteBufferByteBank
 
ByteBufferByteBank(int) - Constructor for class org.scijava.io.nio.ByteBufferByteBank
 
ByteColumn - Class in org.scijava.table
Efficient implementation of Column for byte primitives.
ByteColumn() - Constructor for class org.scijava.table.ByteColumn
 
ByteColumn(String) - Constructor for class org.scijava.table.ByteColumn
 
Bytes - Class in org.scijava.util
Useful methods for reading, writing, decoding and converting bytes and byte arrays.
bytes(String) - Static method in class org.scijava.util.DigestUtils
Converts the given string to a byte array.
bytes(int) - Static method in class org.scijava.util.DigestUtils
Converts the given integer into a byte array.
BytesHandle - Class in org.scijava.io.handle
BytesHandle() - Constructor for class org.scijava.io.handle.BytesHandle
 
BytesLocation - Class in org.scijava.io.location
Location backed by a ByteBank.
BytesLocation(ByteBank) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by the specified ByteBank.
BytesLocation(ByteBank, String) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by the specified ByteBank.
BytesLocation(int) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity, but with a reported size of 0.
BytesLocation(int, String) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity, but with a reported size of 0.
BytesLocation(ByteArray) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank that wraps the specified ByteArray.
BytesLocation(ByteArray, String) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank that wraps the specified ByteArray.
BytesLocation(byte[]) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank which wraps the specified array.
BytesLocation(byte[], String) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank which wraps the specified array.
BytesLocation(byte[], int, int) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity and the provided data.
BytesLocation(byte[], int, int, String) - Constructor for class org.scijava.io.location.BytesLocation
Creates a BytesLocation backed by a ByteArrayByteBank with the specified initial capacity and the provided data.
ByteTable - Interface in org.scijava.table
A table of byte-precision integer values.
ByteToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter
 
ByteToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter
 
ByteToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToDoubleConverter
 
ByteToFloatConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToFloatConverter
 
ByteToIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToIntegerConverter
 
ByteToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToLongConverter
 
ByteToShortConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToShortConverter
 

C

cacheAndReturn(String, MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
cacheAnnotatedObjects(Class<?>, Query) - Static method in class org.scijava.util.ClassUtils
This method scans the provided class, its superclasses and interfaces for all supported Annotation : AnnotatedElement pairs.
cachedLocation(Location) - Method in class org.scijava.download.DiskLocationCache
 
cachedLocation(Location) - Method in interface org.scijava.download.LocationCache
Gets the cache location of a given data source.
CacheService - Interface in org.scijava.cache
Base interface for cache services in SciJava
CADETBLUE - Static variable in class org.scijava.util.Colors
 
call(String[], boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
call(String[], boolean, boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
call() - Method in class org.scijava.module.ModuleRunner
 
callback(Module) - Method in class org.scijava.module.AbstractModuleItem
 
callback(Module) - Method in interface org.scijava.module.ModuleItem
Invokes this item's callback function, if any, on the given module.
callback() - Method in class org.scijava.widget.DefaultWidgetModel
 
callback() - Method in interface org.scijava.widget.WidgetModel
Executes the callback associated with this widget's associated input.
callbacks() - Method in class org.scijava.script.ScriptInfo
Gets the list of routines which should be invoked each time the script is about to execute.
CallingClassUtils - Class in org.scijava.log
Utility class for getting the calling class of a method.
canAssign(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils
canAssign(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils
canCache(Location) - Method in class org.scijava.download.DiskLocationCache
 
canCache(Location) - Method in interface org.scijava.download.LocationCache
Gets whether the given location can be cached by this cache.
canCancel() - Method in class org.scijava.command.CommandInfo
 
canCancel() - Method in class org.scijava.command.DynamicCommandInfo
 
canCancel() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module condones cancellation.
canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
canCast(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils
canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils
canCast(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils
cancel(String) - Method in interface org.scijava.Cancelable
Cancels the operation execution, with the given reason for doing so.
cancel() - Method in class org.scijava.command.CommandModule
Cancels the command, undoing the effects of any CommandModule.preview() calls.
cancel(String) - Method in class org.scijava.command.CommandModule
 
cancel(String) - Method in class org.scijava.command.ContextCommand
Cancels the command execution, with the given reason for doing so.
cancel(String) - Method in class org.scijava.command.DynamicCommand
 
cancel() - Method in class org.scijava.command.InteractiveCommand
 
cancel(String) - Method in class org.scijava.command.ModuleCommand
 
cancel() - Method in interface org.scijava.command.Previewable
Does whatever is necessary upon cancelation to reset things back to before the operation was executed.
cancel() - Method in class org.scijava.module.AbstractModule
 
cancel() - Method in interface org.scijava.module.Module
Performs necessary cleanup in response to cancellation of the module execution.
cancel(String) - Method in class org.scijava.module.process.AbstractPreprocessorPlugin
 
cancel() - Method in class org.scijava.options.OptionsPlugin
 
cancel() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder
 
cancel(String) - Method in class org.scijava.task.DefaultTask
 
cancel(String) - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
 
Cancelable - Interface in org.scijava
An operation that can be canceled.
canConvert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Object, Type) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Object, Class<?>) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Class<?>, Type) - Method in class org.scijava.convert.AbstractConverter
Deprecated.
canConvert(Object, Class<?>) - Method in class org.scijava.convert.CastingConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.CastingConverter
 
canConvert(ConversionRequest) - Method in interface org.scijava.convert.Converter
Checks whether a given ConversionRequest can be processed, by converting the desired ConversionRequest.sourceClass() to its ConversionRequest.destClass() or ConversionRequest.destType().
canConvert(Object, Type) - Method in interface org.scijava.convert.Converter
Checks whether the given object's type can be converted to the specified type.
canConvert(Object, Class<?>) - Method in interface org.scijava.convert.Converter
Checks whether the given object's type can be converted to the specified type.
canConvert(Class<?>, Type) - Method in interface org.scijava.convert.Converter
canConvert(Class<?>, Class<?>) - Method in interface org.scijava.convert.Converter
canConvert(Class<?>, Type) - Method in class org.scijava.convert.DefaultConverter
Deprecated.
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.DefaultConverter
Deprecated.
canConvert(ConversionRequest) - Method in class org.scijava.convert.NullConverter
 
canConvert(Object, Type) - Method in class org.scijava.convert.NullConverter
 
canConvert(Object, Class<?>) - Method in class org.scijava.convert.NullConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.NullConverter
 
canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
canConvert(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils
canConvert(Class<?>, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Object, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canDisplay(Class<?>) - Method in class org.scijava.display.AbstractDisplay
 
canDisplay(Class<?>) - Method in interface org.scijava.display.Display
Tests whether the display is capable of visualizing objects of the given class.
canDisplay(Object) - Method in interface org.scijava.display.Display
Tests whether the display is capable of visualizing the given object.
canDisplay(Class<?>) - Method in class org.scijava.table.DefaultTableDisplay
 
canHandleFile(File) - Method in class org.scijava.script.ScriptLanguageIndex
 
canHandleFile(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
canHandleFile(File) - Method in interface org.scijava.script.ScriptService
TODO
canHandleFile(String) - Method in interface org.scijava.script.ScriptService
TODO
canOpen(String) - Method in class org.scijava.io.AbstractTypedIOService
 
canOpen(Location) - Method in class org.scijava.io.AbstractTypedIOService
 
canOpen(String) - Method in interface org.scijava.io.TypedIOService
 
canOpen(Location) - Method in interface org.scijava.io.TypedIOService
 
canOpen(Location) - Method in class org.scijava.table.io.DefaultTableIOService
 
canPreview() - Method in class org.scijava.command.CommandInfo
 
canPreview() - Method in class org.scijava.command.DynamicCommandInfo
 
canPreview() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module supports previews.
canProvide(ModuleItem<?>) - Method in interface org.scijava.batch.input.BatchInputProvider
Check if a given ModuleItem can be populated by this input provider.
canProvide(ModuleItem<?>) - Method in class org.scijava.batch.input.FileBatchInputProvider
 
canRunHeadless() - Method in class org.scijava.command.CommandInfo
 
canRunHeadless() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module condones headless execution.
canRunHeadless() - Method in class org.scijava.script.ScriptInfo
 
canSave(D, String) - Method in class org.scijava.io.AbstractTypedIOService
 
canSave(D, Location) - Method in class org.scijava.io.AbstractTypedIOService
 
canSave(D, String) - Method in interface org.scijava.io.TypedIOService
 
canSave(D, Location) - Method in interface org.scijava.io.TypedIOService
 
canView(Display<?>) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer
 
canView(Display<?>) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
canView(T) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
canView(Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer
Returns true if an instance of this display viewer can view the given display.
canView(Display<?>) - Method in class org.scijava.ui.viewer.table.AbstractTableDisplayViewer
 
canView(Display<?>) - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer
 
capacity() - Method in class org.scijava.util.AbstractPrimitiveArray
Gets the current capacity of the backing array.
capacity() - Method in interface org.scijava.util.PrimitiveArray
Gets the current capacity of the backing array.
cast(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
cast(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils
cast(Object, Class<T>) - Static method in class org.scijava.util.Types
Casts the given object to the specified type, or null if the types are incompatible.
CastingConverter - Class in org.scijava.convert
Minimal Converter implementation to do direct casting.
CastingConverter() - Constructor for class org.scijava.convert.CastingConverter
 
cdata(String) - Method in class org.scijava.util.XML
Obtains the CDATA identified by the given XPath expression.
cdata(Node) - Static method in class org.scijava.util.XML
Gets the CData beneath the given node.
cdata(Element, String) - Static method in class org.scijava.util.XML
Gets the CData beneath the given element's specified child.
centerWindow(Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window on the screen.
centerWindow(Window, Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window within the specified parent window.
centerWindow(Rectangle, Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window within the specified bounds.
ch(CharSequence) - Method in class org.scijava.parsington.Position
 
ch(CharSequence, int) - Method in class org.scijava.parsington.Position
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.EditorPane
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.FileFunctions.TextWrapper
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.TextEditor
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
changeSetting(LogFormatter.Field, boolean) - Method in class org.scijava.ui.swing.console.LogFormatter
 
characters(char[], int, int) - Method in class org.scijava.minimaven.AbstractPOMHandler
 
CharArray - Class in org.scijava.util
An extensible array of char elements.
CharArray() - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by a fixed-size array.
CharArray(int) - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by a fixed-size array.
CharArray(char[]) - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by the given fixed-size array.
CharArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayUnwrapper
 
CharArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayWrapper
 
charAt(int) - Method in class org.scijava.parsington.SubSequence
 
CharColumn - Class in org.scijava.table
Efficient implementation of Column for char primitives.
CharColumn() - Constructor for class org.scijava.table.CharColumn
 
CharColumn(String) - Constructor for class org.scijava.table.CharColumn
 
CharTable - Interface in org.scijava.table
A table of char values.
CHARTREUSE - Static variable in class org.scijava.util.Colors
 
check - Variable in class org.scijava.swing.checkboxtree.CheckBoxNodePanel
 
check(D, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Throws IllegalArgumentException if (data, display) pair is incompatible.
check(boolean) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
check(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkBounds(int) - Method in class org.scijava.util.AbstractPrimitiveArray
Checks that the index is less than the size of the array.
CheckBoxNodeData - Class in org.scijava.swing.checkboxtree
A tree node user object, for use with a JTree, that tracks whether it is checked.
CheckBoxNodeData(String, boolean) - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
CheckBoxNodeEditor - Class in org.scijava.swing.checkboxtree
A TreeCellEditor for check box tree nodes.
CheckBoxNodeEditor(JTree) - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
CheckBoxNodePanel - Class in org.scijava.swing.checkboxtree
Helper class defining Swing components for check box node renderer UI.
CheckBoxNodePanel() - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodePanel
 
CheckBoxNodeRenderer - Class in org.scijava.swing.checkboxtree
A TreeCellRenderer for check box tree nodes.
CheckBoxNodeRenderer() - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeRenderer
 
checkDirectory(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkDirectory(File, File, long) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkForOutsideChanges() - Method in class org.scijava.ui.swing.script.TextEditor
Check whether the file was edited outside of this EditorPane and ask the user whether to reload.
CheckInputsPreprocessor - Class in org.scijava.module.process
A preprocessor plugin that does a final check of input parameters, complaining if any required ones are null.
CheckInputsPreprocessor() - Constructor for class org.scijava.module.process.CheckInputsPreprocessor
 
checkJar(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkObject(Object) - Method in class org.scijava.display.AbstractDisplay
 
checkParentTag(String, String, String) - Method in class org.scijava.minimaven.MavenProject
 
checkReadPos(long, long) - Method in interface org.scijava.io.ByteBank
Check if we can read from the specified range
CheckSezpoz - Class in org.scijava.util
Deprecated.
checksum() - Method in class org.scijava.download.MultiWriteHandle
 
checksum() - Method in interface org.scijava.io.handle.DataHandle
Gets a "fast" checksum which succinctly represents the contents of the data stream.
checkUpToDate(boolean) - Method in class org.scijava.minimaven.MavenProject
 
checkWritePos(long, long) - Method in interface org.scijava.io.ByteBank
Check if we can write to the specified range
child(String) - Method in interface org.scijava.io.location.BrowsableLocation
Obtains a location with the given name, for whom this location is the parent.
child(String) - Method in class org.scijava.io.location.FileLocation
 
child(int) - Method in class org.scijava.parsington.SyntaxTree
 
children() - Method in interface org.scijava.io.location.BrowsableLocation
Obtains a collection of locations for whom this location is the parent.
children() - Method in class org.scijava.io.location.FileLocation
 
children - Variable in class org.scijava.minimaven.MavenProject
 
children() - Method in class org.scijava.util.DefaultTreeNode
 
children() - Method in interface org.scijava.util.TreeNode
Gets the node's children.
CHOCOLATE - Static variable in class org.scijava.util.Colors
 
ChoiceWidget<U> - Interface in org.scijava.widget
Widget interface for multiple choice selectors.
chooseFile(File, String) - Method in class org.scijava.ui.awt.AWTUI
 
chooseFile(File, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFile(String, File, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFile(String, File, String) - Method in class org.scijava.ui.headless.HeadlessUI
 
chooseFile(File, String) - Method in class org.scijava.ui.swing.AbstractSwingUI
 
chooseFile(File, String) - Method in interface org.scijava.ui.UIService
Prompts the user to choose a file.
chooseFile(String, File, String) - Method in interface org.scijava.ui.UIService
Prompts the user to choose a file.
chooseFile(File, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a file.
chooseFile(String, File, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a file.
chooseFiles(File, File[], FileFilter, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFiles(File, List<File>, FileFilter, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFiles(File, File[], FileFilter, String) - Method in class org.scijava.ui.swing.AbstractSwingUI
 
chooseFiles(File, File[], FileFilter, String) - Method in interface org.scijava.ui.UIService
Prompts the user to select one or multiple files.
chooseFiles(File, List<File>, FileFilter, String) - Method in interface org.scijava.ui.UIService
Prompts the user to select one or multiple files.
chooseFiles(File, File[], FileFilter, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a list of files.
chooseFiles(File, List<File>, FileFilter, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a list of files.
ChooseFontSize - Class in org.scijava.ui.swing.script.commands
Sets the font size in the current editor tab.
ChooseFontSize() - Constructor for class org.scijava.ui.swing.script.commands.ChooseFontSize
 
ChooseTabSize - Class in org.scijava.ui.swing.script.commands
Sets the tab size in the current editor tab.
ChooseTabSize() - Constructor for class org.scijava.ui.swing.script.commands.ChooseTabSize
 
chooseTaskToKill() - Method in class org.scijava.ui.swing.script.TextEditor
Query the list of running scripts and provide a dialog to choose one and kill it.
clampToRange(Class<?>, Number, Number, Number) - Static method in class org.scijava.util.NumberUtils
 
class2source - Static variable in class org.scijava.ui.swing.script.FileFunctions
 
ClassesSearcher - Class in org.scijava.search.classes
Searcher plugin for Java classes.
ClassesSearcher() - Constructor for class org.scijava.search.classes.ClassesSearcher
 
classifier - Variable in class org.scijava.minimaven.Coordinate
 
className() - Method in class org.scijava.annotations.IndexItem
Returns the name of the annotated class.
className() - Method in interface org.scijava.main.MainService.Main
Gets the name of the class containing the main method to run.
className - Variable in class org.scijava.ui.swing.script.autocompletion.ImportCompletionImpl
 
className - Variable in class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion.Import
 
ClassSearchResult - Class in org.scijava.search.classes
Search result for the ClassesSearcher.
ClassSearchResult(Class<?>, String) - Constructor for class org.scijava.search.classes.ClassSearchResult
 
ClassUtil - Class in org.scijava.ui.swing.script.autocompletion
 
ClassUtil() - Constructor for class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
ClassUtil.JarProperties - Class in org.scijava.ui.swing.script.autocompletion
 
ClassUtils - Class in org.scijava.util
Useful methods for working with Class objects and primitive types.
clazz() - Method in class org.scijava.search.classes.ClassSearchResult
 
clean() - Method in class org.scijava.minimaven.MavenProject
 
clean(File) - Method in class org.scijava.minimaven.MavenProject
 
cleanup() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
Clean up data structures after a handle has been closed in the AbstractHigherOrderHandle.close() method.
cleanup() - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
cleanup() - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
clear() - Method in class org.scijava.display.AbstractDisplay
 
clear() - Method in class org.scijava.event.DefaultEventHistory
 
clear() - Method in interface org.scijava.event.EventHistory
Clears the recorded event history.
clear() - Method in class org.scijava.io.ByteArrayByteBank
 
clear() - Method in interface org.scijava.io.ByteBank
Clears the buffer
clear() - Method in class org.scijava.io.DefaultRecentFileService
 
clear() - Method in class org.scijava.io.nio.ByteBufferByteBank
 
clear() - Method in interface org.scijava.io.RecentFileService
Clears the list of recent files.
clear() - Method in class org.scijava.menu.ShadowMenu
 
clear() - Method in class org.scijava.object.ObjectIndex
 
clear() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
clear() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
clear() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
clear() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
clear(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
 
clear(String, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
clear(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
clear(Class<?>) - Method in interface org.scijava.prefs.PrefService
Deletes all of the given Class's keys from persistent storage.
clear(String) - Method in interface org.scijava.prefs.PrefService
clear(String, String) - Method in interface org.scijava.prefs.PrefService
clear(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
clear() - Method in interface org.scijava.table.Table
Removes all data (including row and column headers) from the table.
clear() - Method in class org.scijava.ui.behaviour.BehaviourMap
Removes all bindings from this map..
clear() - Method in class org.scijava.ui.behaviour.InputTriggerMap
Remove all bindings from this map.
clear() - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
clear() - Method in class org.scijava.ui.behaviour.util.WrappedActionMap
 
clear() - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
clear() - Method in class org.scijava.ui.behaviour.util.WrappedInputMap
 
clear() - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
clear() - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Clears the text pane.
clear() - Method in class org.scijava.ui.swing.console.ConsolePanel
 
clear() - Method in class org.scijava.ui.swing.console.LoggingPanel
 
clear() - Method in class org.scijava.ui.swing.console.LogRecorder
 
clear() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
clear() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
clear() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
clear() - Method in class org.scijava.util.AbstractPrimitiveArray
 
clear() - Method in class org.scijava.util.LastRecentlyUsed
Empties the data structure.
clear(Class<?>) - Static method in class org.scijava.util.Prefs
Deprecated.
 
clear(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Clears the node.
clear(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
clearAll() - Method in class org.scijava.prefs.DefaultPrefService
 
clearAll() - Method in interface org.scijava.prefs.PrefService
Deletes all information from the data store.
clearAll() - Static method in class org.scijava.util.Prefs
Deprecated.
Clears everything.
clearParameters() - Method in class org.scijava.module.AbstractModuleInfo
Clears input and output parameters.
clearParameters() - Method in class org.scijava.script.ScriptInfo
 
ClearRecent - Class in org.scijava.plugins.commands.io
Clears the list of recently opened files.
ClearRecent() - Constructor for class org.scijava.plugins.commands.io.ClearRecent
 
clearStatus() - Method in class org.scijava.app.DefaultStatusService
 
clearStatus() - Method in interface org.scijava.app.StatusService
Clears the status message.
click(int, int) - Method in interface org.scijava.ui.behaviour.ClickBehaviour
A click occuered at the specified location, where click can mean a regular mouse click or a typed key.
ClickBehaviour - Interface in org.scijava.ui.behaviour
 
ClojureBindings - Class in org.scijava.plugins.scripting.clojure
A Bindings wrapper around Clojure's local variables.
ClojureBindings() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureBindings
 
ClojureScriptEngine - Class in org.scijava.plugins.scripting.clojure
A Clojure interpreter.
ClojureScriptEngine() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
ClojureScriptLanguage - Class in org.scijava.plugins.scripting.clojure
An adapter of the Clojure interpreter to the SciJava scripting interface.
ClojureScriptLanguage() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
clone() - Method in class org.scijava.util.MersenneTwisterFast
 
close() - Method in class org.scijava.annotations.legacy.LegacyReader
 
close() - Method in class org.scijava.console.MultiOutputStream
 
close() - Method in class org.scijava.Context
 
close() - Method in class org.scijava.display.AbstractDisplay
 
close() - Method in interface org.scijava.display.Display
Closes the display and disposes its resources.
close() - Method in class org.scijava.download.MultiWriteHandle
 
close() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
close() - Method in class org.scijava.io.handle.BytesHandle
 
close() - Method in class org.scijava.io.handle.DataHandleInputStream
 
close() - Method in class org.scijava.io.handle.DataHandleOutputStream
 
close() - Method in class org.scijava.io.handle.DummyHandle
 
close() - Method in class org.scijava.io.handle.FileHandle
 
close() - Method in interface org.scijava.io.handle.StreamHandle
 
Close - Class in org.scijava.plugins.commands.display
Closes the active display.
Close() - Constructor for class org.scijava.plugins.commands.display.Close
 
close() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
close() - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
 
close() - Method in class org.scijava.ui.swing.script.JTextAreaWriter
 
close() - Method in class org.scijava.ui.swing.script.OutputPane
 
close() - Method in class org.scijava.ui.swing.search.SwingSearchBar
Closes the search results pane.
close() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
close() - Method in interface org.scijava.ui.viewer.DisplayWindow
 
close() - Method in class org.scijava.util.LineOutputStream
Flushes the current line buffer if any bytes are left in it.
CloseAll - Class in org.scijava.plugins.commands.display
Closes all displays.
CloseAll() - Constructor for class org.scijava.plugins.commands.display.CloseAll
 
CloseConfirmable - Interface in org.scijava.ui
Interface for UI components that require the user to deal with changed state before the component can be closed.
closeLine(SourceDataLine) - Method in class org.scijava.util.TunePlayer
 
closeOnEOF - Variable in class org.scijava.util.ReadInto
 
closesSearch() - Method in interface org.scijava.search.SearchAction
Deprecated.
Feature removed. By community demand, nothing forces the search results to close.
CodeGenerator - Interface in org.scijava.script
Deprecated.
To be removed in SciJava Common 3.0.0.
CodeGeneratorJava - Class in org.scijava.script
Deprecated.
To be removed in SciJava Common 3.0.0.
CodeGeneratorJava() - Constructor for class org.scijava.script.CodeGeneratorJava
Deprecated.
 
CodeRunner - Interface in org.scijava.run
A plugin which extends the RunService's execution handling.
colon(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
colon(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.COLON operator.
COLON - Static variable in class org.scijava.parsington.Operators
 
ColorRGB - Class in org.scijava.util
A color with red, green and blue color components.
ColorRGB(int, int, int) - Constructor for class org.scijava.util.ColorRGB
 
ColorRGB(String) - Constructor for class org.scijava.util.ColorRGB
Parses a color from the given string.
ColorRGBA - Class in org.scijava.util
A color with red, green, blue and alpha color components.
ColorRGBA(int, int, int, int) - Constructor for class org.scijava.util.ColorRGBA
 
Colors - Class in org.scijava.util
Predefined ColorRGB objects and related utility methods.
ColorWidget<U> - Interface in org.scijava.widget
Widget interface for color choosers.
Column<T> - Interface in org.scijava.table
A column of data of a Table.
column(int) - Method in class org.scijava.table.io.TableIOOptions.Values
 
COLUMN_COUNT - Static variable in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
columnDelimiter(char) - Method in class org.scijava.table.io.TableIOOptions
 
columnDelimiter() - Method in class org.scijava.table.io.TableIOOptions.Values
 
columnFormatter(int, Function<Object, String>) - Method in class org.scijava.table.io.TableIOOptions
 
columnParser(int, Function<String, Object>) - Method in class org.scijava.table.io.TableIOOptions
In case each data type vary between columns, this method can be used to set the parser for a specific column.
ColumnTableIOOptions - Class in org.scijava.table.io
 
ColumnTableIOOptions() - Constructor for class org.scijava.table.io.ColumnTableIOOptions
 
ColumnTableIOOptions.Values - Class in org.scijava.table.io
 
columnType(int, Class<?>) - Method in class org.scijava.table.io.TableIOOptions
In case each data type vary between columns, this method can be used to set the data type of a specific column.
combine(File) - Method in class org.scijava.annotations.AnnotationCombiner
Reads in annotations from all available resources and combines them.
combine() - Method in class org.scijava.util.CombineAnnotations
Deprecated.
combine(File) - Method in interface org.scijava.util.Combiner
Combines a collection of items and writes the result to the provided directory.
combine(File) - Method in class org.scijava.util.ServiceCombiner
 
CombineAnnotations - Class in org.scijava.util
Deprecated.
Use AnnotationCombiner instead.
CombineAnnotations() - Constructor for class org.scijava.util.CombineAnnotations
Deprecated.
Combiner - Interface in org.scijava.util
Interface for combining structurally-delicate items (such as annotations) which need to be unified to a single output.
command() - Method in class org.scijava.AbstractGateway
 
Command - Interface in org.scijava.command
Command is a plugin that is executable.
command() - Method in interface org.scijava.Gateway
Gets this application context's CommandService.
Command - Class in org.scijava.ui.behaviour.io.gui
Behaviour or action name in a context.
Command(String, String) - Constructor for class org.scijava.ui.behaviour.io.gui.Command
 
CommandCodeRunner - Class in org.scijava.command.run
Runs the given Command class.
CommandCodeRunner() - Constructor for class org.scijava.command.run.CommandCodeRunner
 
CommandDescriptionBuilder - Class in org.scijava.ui.behaviour.io.gui
Utility class that is used to build a map of Commands to their description.
CommandDescriptionBuilder() - Constructor for class org.scijava.ui.behaviour.io.gui.CommandDescriptionBuilder
 
CommandFinder - Class in org.scijava.ui.swing.commands
A plugin to display the CommandFinderPanel in a dialog.
CommandFinder() - Constructor for class org.scijava.ui.swing.commands.CommandFinder
 
CommandFinderPanel - Class in org.scijava.ui.swing.commands
A panel that allows the user to search for SciJava commands.
CommandFinderPanel(ModuleService, String) - Constructor for class org.scijava.ui.swing.commands.CommandFinderPanel
 
CommandFinderPanel.CommandTableModel - Class in org.scijava.ui.swing.commands
 
commandHelp() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
commandHelp() - Method in interface org.scijava.plugins.scripting.matlab.MATLABService
Builds a complete usage message by querying the MATLABCommands.help() method of all available commands.
CommandInfo - Class in org.scijava.command
A collection of metadata about a particular Command.
CommandInfo(String) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(String, Plugin) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(Class<? extends Command>) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(PluginInfo<Command>) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object describing the same command as the given PluginInfo.
CommandInfo(PluginInfo<Command>, String, Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo
 
CommandModule - Class in org.scijava.command
Module adapter class for working with a Command instance.
CommandModule(CommandInfo) - Constructor for class org.scijava.command.CommandModule
Creates a command module for the given PluginInfo.
CommandModule(CommandInfo, Command) - Constructor for class org.scijava.command.CommandModule
Creates a command module for the given CommandInfo, around the specified Command instance.
CommandModuleItem<T> - Class in org.scijava.command
ModuleItem implementation describing an input or output of a command.
CommandModuleItem(ModuleInfo, Field) - Constructor for class org.scijava.command.CommandModuleItem
 
CommandService - Interface in org.scijava.command
Interface for service that keeps track of available commands.
commandService() - Method in class org.scijava.platform.DefaultPlatformService
 
commandService() - Method in interface org.scijava.platform.PlatformService
 
commandsList - Variable in class org.scijava.ui.swing.commands.CommandFinderPanel
 
CommandTableModel(List<ModuleInfo>, String) - Constructor for class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
compare(Prioritized, Prioritized) - Static method in class org.scijava.Priority
Compares two Prioritized objects.
compare(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
Compares two Class objects using their fully qualified names.
compare(T, T) - Static method in class org.scijava.util.MiscUtils
Compares two comparable objects, even if one or both of them are null.
compare(T, T, boolean) - Static method in class org.scijava.util.MiscUtils
Compares two comparable objects, even if one or both of them are null.
compare(String, String) - Static method in class org.scijava.util.VersionUtils
Compares two version strings.
compareTo(ShadowMenu) - Method in class org.scijava.menu.ShadowMenu
 
compareTo(MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
compareTo(Operator) - Method in class org.scijava.parsington.Operator
 
compareTo(Prioritized) - Method in interface org.scijava.Prioritized
 
compareTo(Prioritized) - Method in interface org.scijava.UIDetails
 
compareTo(POM) - Method in class org.scijava.util.POM
 
compareVersion(String, String) - Static method in class org.scijava.minimaven.BuildEnvironment
 
compareVersions(String, String) - Static method in class org.scijava.util.POM
Compares two version strings.
compile(String) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
compile(Reader) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
compile(String) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
compile(Reader) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
compile(File) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles the specified .java file.
compile(File, Writer) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles the specified .java file.
compile() - Method in class org.scijava.ui.swing.script.TextEditor
 
CompileError(Object) - Constructor for exception org.scijava.minimaven.JavaCompiler.CompileError
 
complement(Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
complement(int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
complement(long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
complement(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.COMPLEMENT operator.
COMPLEMENT - Static variable in class org.scijava.parsington.Operators
 
completionsFor(CompletionProvider, String, String, String) - Method in interface org.scijava.ui.swing.script.autocompletion.AutoCompletionListener
 
component - Variable in class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
component(Type) - Static method in class org.scijava.util.Types
Gets the component type of the given array type, or null if not an array.
configChanged() - Method in interface org.scijava.ui.behaviour.io.gui.VisualEditorPanel.ConfigChangeListener
Called when settings are changed in the visual editor.
configChangeListeners() - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
Deprecated.
Use modelChangedListeners() instead.
configCommittedListeners() - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
Please, see the documentation of VisualEditorPanel.modelChangedListeners and VisualEditorPanel.configCommittedListeners to understand when these listeners are triggered.
configToModel() - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
 
configure(PlatformService) - Method in class org.scijava.platform.AbstractPlatform
 
configure(PlatformService) - Method in interface org.scijava.platform.Platform
Activates and configures the platform.
configure(PlatformService) - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform
 
configure() - Method in interface org.scijava.tool.Tool
Occurs when the user right clicks this tool's icon.
confirmClose() - Method in interface org.scijava.ui.CloseConfirmable
 
confirmClose() - Method in class org.scijava.ui.swing.script.TextEditor
 
console() - Method in class org.scijava.AbstractGateway
 
console() - Method in interface org.scijava.Gateway
Gets this application context's ConsoleService.
ConsoleArgument - Interface in org.scijava.console
A plugin which extends an application's command line argument handling.
ConsolePane<C> - Interface in org.scijava.ui.console
A panel which displays stdout and stderr console output.
ConsolePanel - Class in org.scijava.ui.swing.console
ConsolePanel is a JPanel holding a JTextArea.
ConsolePanel(Context) - Constructor for class org.scijava.ui.swing.console.ConsolePanel
 
ConsoleService - Interface in org.scijava.console
Interface for service that manages interaction with the console.
ConsoleUtils - Class in org.scijava.console
Deprecated.
Use alternatives instead (see individual method docs).
ConsoleUtils() - Constructor for class org.scijava.console.ConsoleUtils
Deprecated.
 
consume() - Method in class org.scijava.event.SciJavaEvent
 
contains(Object) - Method in class org.scijava.display.AbstractDisplay
 
contains(Object) - Method in class org.scijava.menu.ShadowMenu
 
contains(Object) - Method in class org.scijava.object.ObjectIndex
 
contains(Object) - Method in class org.scijava.object.SortedObjectIndex
 
contains(Object) - Method in interface org.scijava.table.Column
 
contains(Object) - Method in interface org.scijava.table.Table
Gets whether the table contains the given column.
contains(byte[], byte) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(boolean[], boolean) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(char[], char) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(double[], double) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(float[], float) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(int[], int) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(long[], long) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(short[], short) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(Object[], Object) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(boolean) - Method in class org.scijava.util.BoolArray
 
contains(Object) - Method in class org.scijava.util.BoolArray
 
contains(byte) - Method in class org.scijava.util.ByteArray
 
contains(Object) - Method in class org.scijava.util.ByteArray
 
contains(char) - Method in class org.scijava.util.CharArray
 
contains(Object) - Method in class org.scijava.util.CharArray
 
contains(double) - Method in class org.scijava.util.DoubleArray
 
contains(Object) - Method in class org.scijava.util.DoubleArray
 
contains(float) - Method in class org.scijava.util.FloatArray
 
contains(Object) - Method in class org.scijava.util.FloatArray
 
contains(int) - Method in class org.scijava.util.IntArray
 
contains(Object) - Method in class org.scijava.util.IntArray
 
contains(IntCoords) - Method in class org.scijava.util.IntRect
Tests whether the given coordinates lie within the rectangle.
contains(Object) - Method in class org.scijava.util.LastRecentlyUsed
 
contains(long) - Method in class org.scijava.util.LongArray
 
contains(Object) - Method in class org.scijava.util.LongArray
 
contains(Object) - Method in class org.scijava.util.ObjectArray
 
contains(RealCoords) - Method in class org.scijava.util.RealRect
Tests whether the given coordinates lie within the rectangle.
contains(short) - Method in class org.scijava.util.ShortArray
 
contains(Object) - Method in class org.scijava.util.ShortArray
 
containsAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay
 
containsAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu
 
containsAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex
 
containsAll(Collection<?>) - Method in class org.scijava.object.SortedObjectIndex
 
containsAll(Collection<?>) - Method in interface org.scijava.table.Column
 
containsAll(Collection<?>) - Method in interface org.scijava.table.Table
Returns true if the table contains all of the columns of the specified collection.
containsAll(Collection<?>) - Method in class org.scijava.util.BoolArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ByteArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.CharArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.DoubleArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.FloatArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.IntArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed
 
containsAll(Collection<?>) - Method in class org.scijava.util.LongArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ObjectArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ShortArray
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
containsProject(String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
containsProject(Coordinate) - Method in class org.scijava.minimaven.BuildEnvironment
 
containsTypeVars(Type) - Static method in class org.scijava.util.Types
Learn, recursively, whether any of the type parameters associated with type are bound to variables.
containsValue(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
context() - Method in class org.scijava.AbstractContextual
 
context() - Method in class org.scijava.command.CommandModule
 
context() - Method in class org.scijava.command.DynamicCommand
 
Context - Class in org.scijava
Top-level SciJava application context, which initializes and maintains a list of services.
Context() - Constructor for class org.scijava.Context
Creates a new SciJava application context with all available services.
Context(boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context.
Context(boolean, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context.
Context(Class...) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(PluginIndex) - Constructor for class org.scijava.Context
Creates a new SciJava application context with all available services from the specified PluginIndex.
Context(Collection<Class<? extends Service>>, PluginIndex) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>, PluginIndex, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
context() - Method in interface org.scijava.Contextual
Gets the application context to which the object belongs.
context() - Method in class org.scijava.script.ScriptInfo
 
context() - Method in class org.scijava.script.ScriptModule
 
context() - Method in class org.scijava.search.classes.ClassSearchResult
 
context() - Method in class org.scijava.search.module.ModuleSearchResult
 
context() - Method in interface org.scijava.search.SearchResult
 
CONTEXT_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin
Deprecated.
Use a context-specific menu root string instead. This one is too general. There is no such thing as a "default context menu" since such a thing wouldn't be a context menu!
ContextCommand - Class in org.scijava.command
A command that knows its context.
ContextCommand() - Constructor for class org.scijava.command.ContextCommand
 
ContextDisposingEvent - Class in org.scijava.event
Event to be published just before disposing a context.
ContextDisposingEvent() - Constructor for class org.scijava.event.ContextDisposingEvent
 
contexts - Static variable in class org.scijava.ui.swing.script.TextEditor
 
Contextual - Interface in org.scijava
An object that belongs to a SciJava application context.
conversionBuffer() - Method in class org.scijava.io.handle.AbstractDataHandle
 
conversionBuffer() - Method in interface org.scijava.io.handle.DataHandle
 
ConversionRequest - Class in org.scijava.convert
Currency for use in Converter and ConvertService methods.
ConversionRequest(Object, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionRequest(Type, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionRequest(Object, Type, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionUtils - Class in org.scijava.util
Deprecated.
convert() - Method in class org.scijava.AbstractGateway
 
convert(Object, Type) - Method in class org.scijava.convert.AbstractConverter
 
convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter
 
convert(Object, Type) - Method in class org.scijava.convert.AbstractConvertService
 
convert(Object, Class<T>) - Method in class org.scijava.convert.AbstractConvertService
 
convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConvertService
 
convert(Object, Class<T>) - Method in class org.scijava.convert.AbstractDelegateConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.CastingConverter
 
convert(Object, Type) - Method in interface org.scijava.convert.Converter
As Converter.convert(Object, Class) but capable of creating and populating multi-element objects (Collections and array types).
convert(Object, Class<T>) - Method in interface org.scijava.convert.Converter
Converts the given object to an object of the specified type.
convert(ConversionRequest) - Method in interface org.scijava.convert.Converter
convert(Object, Type) - Method in interface org.scijava.convert.ConvertService
 
convert(Object, Class<T>) - Method in interface org.scijava.convert.ConvertService
 
convert(ConversionRequest) - Method in interface org.scijava.convert.ConvertService
 
convert(Object, Type) - Method in class org.scijava.convert.DefaultConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.DefaultConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.FileToStringConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.FileListConverters.StringToFileConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.NullConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToBigDecimalConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToBigIntegerConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToDoubleConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToFloatConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToIntegerConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToLongConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.NumberToNumberConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToNumberConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToShortConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayUnwrapper
 
convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayWrapper
 
convert(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils
convert(Object, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
convert(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
convertData(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
convertData(DragAndDropData) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Converts the given DragAndDropData to the type of data object supported by this handler.
convertDataUnchecked(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Converts the given data to this handler's native data type, without verifying compatibility first.
Converter<I,O> - Interface in org.scijava.convert
Extensible conversion Plugin for converting between classes and types.
convertObject(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
convertObject(Object) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Converts the given object to the type of data object supported by this handler.
convertObjectUnchecked(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Converts the given object to this handler's native data type, without verifying compatibility first.
ConvertService - Interface in org.scijava.convert
Service for converting between types using an extensible plugin: Converter.
convertSpacesToTabs() - Method in class org.scijava.ui.swing.script.EditorPane
 
convertTabsToSpaces() - Method in class org.scijava.ui.swing.script.EditorPane
 
convertToEnum(String, Class<T>) - Static method in class org.scijava.util.ConversionUtils
Coordinate - Class in org.scijava.minimaven
TODO
Coordinate() - Constructor for class org.scijava.minimaven.Coordinate
 
Coordinate(String, String, String) - Constructor for class org.scijava.minimaven.Coordinate
 
Coordinate(String, String, String, String, boolean, String, String) - Constructor for class org.scijava.minimaven.Coordinate
Deprecated.
Coordinate(String, String, String, String, boolean, String, String, Set<String>) - Constructor for class org.scijava.minimaven.Coordinate
 
coordinate - Variable in class org.scijava.minimaven.MavenProject
 
copy(DataHandle<Location>, DataHandle<Location>) - Static method in class org.scijava.io.handle.DataHandles
Copies all bytes from the input to the output handle.
copy(DataHandle<Location>, DataHandle<Location>, Task) - Static method in class org.scijava.io.handle.DataHandles
Copies all bytes from the input to the output handle, reporting the progress to the provided task.
copy(DataHandle<Location>, DataHandle<Location>, int) - Static method in class org.scijava.io.handle.DataHandles
Copies up to length bytes from the input to the output handle.
copy(DataHandle<Location>, DataHandle<Location>, long, Task) - Static method in class org.scijava.io.handle.DataHandles
Copies up to length bytes from the input to the output handle, reporting the progress to the provided task.
copy(DataHandle<Location>, DataHandle<Location>, long, Task, int) - Static method in class org.scijava.io.handle.DataHandles
Copies up to length bytes from the input to the output handle, reporting the progress to the provided task.
copy(InputStream, File) - Static method in class org.scijava.minimaven.BuildEnvironment
 
copy(InputStream, OutputStream, boolean) - Static method in class org.scijava.minimaven.BuildEnvironment
 
copyArray() - Method in class org.scijava.util.AbstractPrimitiveArray
 
copyArray() - Method in interface org.scijava.util.PrimitiveArray
Returns a copy of the primitive-array array.
copyDependencies(File, boolean) - Method in class org.scijava.minimaven.MavenProject
Copy the runtime dependencies
copyFile(File, File) - Static method in class org.scijava.minimaven.BuildEnvironment
 
copyOrThis() - Method in class org.scijava.optional.AbstractOptions
 
copySelectionToClipboard() - Method in class org.scijava.ui.swing.console.LoggingPanel
 
copyTo(InputStream, String) - Method in class org.scijava.ui.swing.script.FileFunctions
 
copyTo(InputStream, OutputStream) - Method in class org.scijava.ui.swing.script.FileFunctions
 
CORAL - Static variable in class org.scijava.util.Colors
 
cornerText(String) - Method in class org.scijava.table.io.TableIOOptions
 
cornerText() - Method in class org.scijava.table.io.TableIOOptions.Values
 
CORNFLOWERBLUE - Static variable in class org.scijava.util.Colors
 
CORNSILK - Static variable in class org.scijava.util.Colors
 
count() - Method in class org.scijava.parsington.SyntaxTree
 
create(SearchResult) - Method in class org.scijava.batch.BatchModuleSearchActionFactory
 
create(String) - Static method in class org.scijava.input.Accelerator
Creates an accelerator from the given string representation.
create(D) - Method in interface org.scijava.plugin.FactoryPlugin
 
create(Class<? extends SciJavaPlugin>) - Static method in class org.scijava.plugin.PluginInfo
Creates a PluginInfo for the given plugin class.
create(Class<P>, Class<PT>) - Static method in class org.scijava.plugin.PluginInfo
Creates a PluginInfo for the given plugin class of the specified plugin type.
create(Class<P>) - Method in interface org.scijava.plugin.PTService
Creates an instance of the given plugin class.
create(Class<P>) - Method in interface org.scijava.plugin.SingletonService
 
create(D) - Method in interface org.scijava.plugin.WrapperService
Creates a new plugin instance wrapping the given associated data object.
create(SearchResult) - Method in class org.scijava.search.classes.JavadocSearchActionFactory
 
create(SearchResult) - Method in class org.scijava.search.classes.SourceSearchActionFactory
 
create(SearchResult) - Method in class org.scijava.search.module.RunModuleSearchActionFactory
 
create(SearchResult) - Method in class org.scijava.search.snippet.RunSnippetActionFactory
 
create(SearchResult) - Method in class org.scijava.search.web.OpenInBrowserActionFactory
 
createAutoCompletion(CompletionProvider) - Method in class org.scijava.ui.swing.script.languagesupport.JythonLanguageSupportPlugin
Ignores the argument.
createBindings() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
createBindings() - Method in class org.scijava.script.AbstractScriptEngine
 
createBindings() - Method in class org.scijava.script.AdaptedScriptEngine
 
createButton16(ImageIcon) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
createButton16(ImageIcon, String) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
createColumn(String) - Method in class org.scijava.table.AbstractTable
 
createColumn(String) - Method in class org.scijava.table.DefaultBoolTable
 
createColumn(String) - Method in class org.scijava.table.DefaultByteTable
 
createColumn(String) - Method in class org.scijava.table.DefaultCharTable
 
createColumn(String) - Method in class org.scijava.table.DefaultDoubleTable
 
createColumn(String) - Method in class org.scijava.table.DefaultFloatTable
 
createColumn(String) - Method in class org.scijava.table.DefaultGenericTable
 
createColumn(String) - Method in class org.scijava.table.DefaultIntTable
 
createColumn(String) - Method in class org.scijava.table.DefaultLongTable
 
createColumn(String) - Method in class org.scijava.table.DefaultShortTable
 
createConsoleMenu() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
createDisplay(Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplay(String, Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplay(Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.
createDisplay(String, Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.
createDisplayPanel(T) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
createDisplayQuietly(Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplayQuietly(Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, without publishing a DisplayCreatedEvent.
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.awt.AWTUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.headless.HeadlessUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.swing.sdi.SwingSDIUI
 
createDisplayWindow(Display<?>, EventService) - Static method in class org.scijava.ui.swing.sdi.SwingSDIUI
Utility method for creating SwingDisplayWindows.
createDisplayWindow(Display<?>) - Method in interface org.scijava.ui.UserInterface
Creates a new display window housing the given display, or null if not applicable.
createExactService(Class<S>) - Method in class org.scijava.service.ServiceHelper
Instantiates a service of the given class, registering it in the index.
createFileFilter(String) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget
Creates a FileFilter that filters files and/or directories according to the given widget style.
createImage(int, int) - Static method in class org.scijava.ui.awt.AWTImageTools
Creates a BufferedImage compatible with the graphics environment.
createInputPanel() - Method in class org.scijava.ui.awt.widget.AWTInputHarvester
 
createInputPanel() - Method in class org.scijava.ui.swing.widget.SwingInputHarvester
 
createInputPanel() - Method in interface org.scijava.widget.InputHarvester
Constructs an empty InputPanel.
createInstance() - Method in class org.scijava.command.CommandInfo
 
createInstance() - Method in interface org.scijava.Instantiable
Creates an object.
createInstance(PluginInfo<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstance() - Method in class org.scijava.plugin.PluginInfo
 
createInstance(PluginInfo<PT>) - Method in interface org.scijava.plugin.PluginService
Creates an instance of the given plugin.
createInstances(List<PluginInfo<PT>>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstances(List<PluginInfo<PT>>) - Method in interface org.scijava.plugin.PluginService
Creates an instance of each of the plugins on the given list.
createInstancesOfType(Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstancesOfType(Class<PT>) - Method in interface org.scijava.plugin.PluginService
Creates one instance each of the available plugins of the given type.
createLeaf(ShadowMenu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
createLeaf(ShadowMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createMenus(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
createMenus(ShadowMenu, T) - Method in interface org.scijava.menu.MenuCreator
 
createMenus(MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService
Populates a UI-specific application menu structure.
createMenus(String, MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService
Populates a UI-specific menu structure.
createMenus() - Method in class org.scijava.ui.awt.AWTUI
 
createMenus() - Method in class org.scijava.ui.swing.AbstractSwingUI
Creates a JMenuBar from the master ShadowMenu structure.
createMenus(ShadowMenu, T) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createModel(Number, Number, Number, Number) - Method in class org.scijava.ui.swing.widget.SpinnerNumberModelFactory
 
createModel(InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Method in interface org.scijava.widget.WidgetService
Create a WidgetModel for the given module input.
createModule(Command) - Method in class org.scijava.command.CommandInfo
Instantiates the module described by this module info, around the specified existing command instance.
createModule() - Method in class org.scijava.command.CommandInfo
 
createModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService
 
createModule() - Method in interface org.scijava.module.ModuleInfo
Instantiates the module described by this module info.
createModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService
Creates an instance of the given module.
createModule() - Method in interface org.scijava.module.MutableModuleInfo
 
createModule() - Method in class org.scijava.script.ScriptInfo
 
createNewDocument() - Method in class org.scijava.ui.swing.script.TextEditor
 
createNewDocument(String, String) - Method in class org.scijava.ui.swing.script.TextEditor
 
createNewFromTemplate(File, File) - Method in class org.scijava.ui.swing.script.TextEditor
Open a new editor to edit the given file, with a templateFile if the file does not exist yet
createNonLeaf(ShadowMenu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
createNonLeaf(ShadowMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createPath(File, String) - Static method in class org.scijava.test.TestUtils
Creates an empty file at the given path, creating intermediate directories as necessary.
createTask(String) - Method in class org.scijava.task.DefaultTaskService
 
createTask(String) - Method in interface org.scijava.task.TaskService
Creates a new, empty Task.
createTemporaryDirectory(String) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String, Class<?>) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String, Class<?>, String) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String) - Static method in class org.scijava.util.FileUtils
Creates a temporary directory.
createTemporaryDirectory(String, String) - Static method in class org.scijava.util.FileUtils
Creates a temporary directory.
createTemporaryDirectory(String, String, File) - Static method in class org.scijava.util.FileUtils
Creates a temporary directory.
createUI() - Method in class org.scijava.ui.AbstractUserInterface
Subclasses override to control UI creation.
createUI() - Method in class org.scijava.ui.awt.AWTUI
 
createUI() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
CRIMSON - Static variable in class org.scijava.util.Colors
 
CTRL_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
current - Variable in class org.scijava.ui.swing.script.ErrorHandler
 
currentOffset - Variable in class org.scijava.ui.swing.script.ErrorHandler
 
CustomDrawnTool - Interface in org.scijava.tool
Tools that would like to define how they are drawn implement this interface.
CYAN - Static variable in class org.scijava.util.Colors
 

D

DARKBLUE - Static variable in class org.scijava.util.Colors
 
DARKCYAN - Static variable in class org.scijava.util.Colors
 
DARKGOLDENROD - Static variable in class org.scijava.util.Colors
 
DARKGRAY - Static variable in class org.scijava.util.Colors
 
DARKGREEN - Static variable in class org.scijava.util.Colors
 
DARKGREY - Static variable in class org.scijava.util.Colors
 
DARKKHAKI - Static variable in class org.scijava.util.Colors
 
DARKMAGENTA - Static variable in class org.scijava.util.Colors
 
DARKOLIVEGREEN - Static variable in class org.scijava.util.Colors
 
DARKORANGE - Static variable in class org.scijava.util.Colors
 
DARKORCHID - Static variable in class org.scijava.util.Colors
 
DARKRED - Static variable in class org.scijava.util.Colors
 
DARKSALMON - Static variable in class org.scijava.util.Colors
 
DARKSEAGREEN - Static variable in class org.scijava.util.Colors
 
DARKSLATEBLUE - Static variable in class org.scijava.util.Colors
 
DARKSLATEGRAY - Static variable in class org.scijava.util.Colors
 
DARKSLATEGREY - Static variable in class org.scijava.util.Colors
 
DARKTURQUOISE - Static variable in class org.scijava.util.Colors
 
DARKVIOLET - Static variable in class org.scijava.util.Colors
 
data() - Method in class org.scijava.util.DefaultTreeNode
 
data() - Method in interface org.scijava.util.TreeNode
Gets the data associated with the node.
DataHandle<L extends Location> - Interface in org.scijava.io.handle
A data handle is a plugin which provides both streaming and random access to bytes at a Location (e.g., files or arrays).
DataHandle.ByteOrder - Enum in org.scijava.io.handle
 
DataHandleInputStream<L extends Location> - Class in org.scijava.io.handle
InputStream backed by a DataHandle.
DataHandleInputStream(DataHandle<L>) - Constructor for class org.scijava.io.handle.DataHandleInputStream
Creates an input stream around the given DataHandle.
DataHandleOutputStream<L extends Location> - Class in org.scijava.io.handle
DataHandleOutputStream(DataHandle<L>) - Constructor for class org.scijava.io.handle.DataHandleOutputStream
Creates an output stream around the given DataHandle.
DataHandles - Class in org.scijava.io.handle
Utility methods for working with DataHandles.
DataHandleService - Interface in org.scijava.io.handle
Interface for low-level data I/O: reading and writing bytes using DataHandles.
DataOpenedEvent - Class in org.scijava.io.event
An event indicating that data has been opened from a location.
DataOpenedEvent(Location, Object) - Constructor for class org.scijava.io.event.DataOpenedEvent
 
DataOpenedEvent(String, Object) - Constructor for class org.scijava.io.event.DataOpenedEvent
Deprecated.
DataSavedEvent - Class in org.scijava.io.event
An event indicating that data has been saved to a destination.
DataSavedEvent(Location, Object) - Constructor for class org.scijava.io.event.DataSavedEvent
 
DataSavedEvent(String, Object) - Constructor for class org.scijava.io.event.DataSavedEvent
Deprecated.
DateWidget<U> - Interface in org.scijava.widget
Widget interface for dates.
deactivate() - Method in interface org.scijava.tool.Tool
Informs the tool that it is no longer active.
deactivate(KeyPressedManager.KeyPressedReceiver) - Method in class org.scijava.ui.behaviour.KeyPressedManager
 
debug(Object) - Method in interface org.scijava.log.Logger
 
debug(Throwable) - Method in interface org.scijava.log.Logger
 
debug(Object, Throwable) - Method in interface org.scijava.log.Logger
 
DEBUG - Static variable in class org.scijava.log.LogLevel
 
DEBUG - Static variable in interface org.scijava.log.LogService
Deprecated.
debug - Variable in class org.scijava.minimaven.BuildEnvironment
 
debug() - Method in class org.scijava.script.ScriptREPL
 
DebugPostprocessor - Class in org.scijava.module.process
A postprocessor plugin that dumps parameter values to the log.
DebugPostprocessor() - Constructor for class org.scijava.module.process.DebugPostprocessor
 
DebugPreprocessor - Class in org.scijava.module.process
A preprocessor plugin that dumps information to the log.
DebugPreprocessor() - Constructor for class org.scijava.module.process.DebugPreprocessor
 
DebugUtils - Class in org.scijava.util
Useful methods for debugging programs.
decide(LoggingEvent) - Method in class org.scijava.config.logback.AbstractLevelsFilter
 
decode(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.jython.JythonScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.renjin.RenjinScriptLanguage
 
decode(Object) - Method in interface org.scijava.script.ScriptLanguage
Performs any necessary conversion of an encoded object retrieved from the language's script engine.
DEEPPINK - Static variable in class org.scijava.util.Colors
 
DEEPSKYBLUE - Static variable in class org.scijava.util.Colors
 
DEFAULT_BLOCK_SIZE - Static variable in interface org.scijava.io.handle.DataHandle
Default block size to use when searching through the stream.
DEFAULT_PAD_CHAR - Static variable in class org.scijava.util.StringUtils
 
DEFAULT_SEARCH_PATH - Static variable in class org.scijava.nativelib.NativeLibraryUtil
 
DEFAULT_SHORTENER_THRESHOLD - Static variable in class org.scijava.util.FileUtils
 
DEFAULT_TAB_SIZE - Static variable in class org.scijava.ui.swing.script.EditorPane
 
DEFAULT_WEIGHT - Static variable in class org.scijava.MenuEntry
 
DEFAULT_WINDOW_HEIGHT - Static variable in class org.scijava.ui.swing.script.TextEditor
 
DEFAULT_WINDOW_WIDTH - Static variable in class org.scijava.ui.swing.script.TextEditor
 
defaultAccelerators - Variable in class org.scijava.ui.swing.script.TextEditor
 
DefaultAppEventService - Class in org.scijava.platform
Deprecated.
Use AppService and App instead.
DefaultAppEventService() - Constructor for class org.scijava.platform.DefaultAppEventService
Deprecated.
 
DefaultAppService - Class in org.scijava.app
Default service for application-level functionality.
DefaultAppService() - Constructor for class org.scijava.app.DefaultAppService
 
DefaultAutoCompleter - Class in org.scijava.script
Default implementation of AutoCompleter.
DefaultAutoCompleter(ScriptLanguage) - Constructor for class org.scijava.script.DefaultAutoCompleter
 
DefaultAutoImporters - Class in org.scijava.ui.swing.script
Generates the statements for the auto-imports (for internal use by the script editor and script interpreter only).
DefaultAutoImporters() - Constructor for class org.scijava.ui.swing.script.DefaultAutoImporters
 
DefaultBoolTable - Class in org.scijava.table
Default implementation of BoolTable.
DefaultBoolTable() - Constructor for class org.scijava.table.DefaultBoolTable
Creates an empty boolean table.
DefaultBoolTable(int, int) - Constructor for class org.scijava.table.DefaultBoolTable
Creates a boolean table with the given row and column dimensions.
DefaultByteTable - Class in org.scijava.table
Default implementation of ByteTable.
DefaultByteTable() - Constructor for class org.scijava.table.DefaultByteTable
Creates an empty byte table.
DefaultByteTable(int, int) - Constructor for class org.scijava.table.DefaultByteTable
Creates a byte table with the given row and column dimensions.
DefaultCacheService - Class in org.scijava.cache
Trivial CacheService implementation.
DefaultCacheService() - Constructor for class org.scijava.cache.DefaultCacheService
 
DefaultCharTable - Class in org.scijava.table
Default implementation of CharTable.
DefaultCharTable() - Constructor for class org.scijava.table.DefaultCharTable
Creates an empty char table.
DefaultCharTable(int, int) - Constructor for class org.scijava.table.DefaultCharTable
Creates a char table with the given row and column dimensions.
DefaultColumn<T> - Class in org.scijava.table
Default implementation of Column.
DefaultColumn(Class<T>) - Constructor for class org.scijava.table.DefaultColumn
 
DefaultColumn(Class<T>, String) - Constructor for class org.scijava.table.DefaultColumn
 
DefaultCommandService - Class in org.scijava.command
Default service for working with Commands.
DefaultCommandService() - Constructor for class org.scijava.command.DefaultCommandService
 
DefaultConsoleService - Class in org.scijava.console
Default service for managing interaction with the console.
DefaultConsoleService() - Constructor for class org.scijava.console.DefaultConsoleService
 
DefaultConverter - Class in org.scijava.convert
Default Converter implementation.
DefaultConverter() - Constructor for class org.scijava.convert.DefaultConverter
 
DefaultConvertService - Class in org.scijava.convert
Default ConvertService implementation.
DefaultConvertService() - Constructor for class org.scijava.convert.DefaultConvertService
 
DefaultDataHandleService - Class in org.scijava.io.handle
Default implementation of DataHandleService.
DefaultDataHandleService() - Constructor for class org.scijava.io.handle.DefaultDataHandleService
 
DefaultDisplay - Class in org.scijava.display
Default display for objects, when no other displays are available.
DefaultDisplay() - Constructor for class org.scijava.display.DefaultDisplay
 
DefaultDisplayService - Class in org.scijava.display
Default service for working with Displays.
DefaultDisplayService() - Constructor for class org.scijava.display.DefaultDisplayService
 
DefaultDoubleTable - Class in org.scijava.table
Default implementation of DoubleTable.
DefaultDoubleTable() - Constructor for class org.scijava.table.DefaultDoubleTable
Creates an empty results table.
DefaultDoubleTable(int, int) - Constructor for class org.scijava.table.DefaultDoubleTable
Creates a results table with the given row and column dimensions.
DefaultDownloadService - Class in org.scijava.download
Default implementation of DownloadService.
DefaultDownloadService() - Constructor for class org.scijava.download.DefaultDownloadService
 
DefaultDragAndDropData - Class in org.scijava.ui.dnd
Default implementation of DragAndDropData, which provides a UI-agnostic way to bundle an object together with its MIME type.
DefaultDragAndDropData(Context, MIMEType, Object) - Constructor for class org.scijava.ui.dnd.DefaultDragAndDropData
 
DefaultDragAndDropService - Class in org.scijava.ui.dnd
Default service for handling drag and drop events.
DefaultDragAndDropService() - Constructor for class org.scijava.ui.dnd.DefaultDragAndDropService
 
DefaultEvaluator - Class in org.scijava.parsington.eval
An expression evaluator for most standard operators with common built-in types (i.e.: Booleans, Strings and Numbers).
DefaultEvaluator() - Constructor for class org.scijava.parsington.eval.DefaultEvaluator
 
DefaultEvaluator(ExpressionParser) - Constructor for class org.scijava.parsington.eval.DefaultEvaluator
 
DefaultEventBus - Class in org.scijava.event
An EventService implementation for SciJava.
DefaultEventBus(ThreadService, LogService) - Constructor for class org.scijava.event.DefaultEventBus
 
DefaultEventHistory - Class in org.scijava.event
Default service for keeping a history of SciJava events.
DefaultEventHistory() - Constructor for class org.scijava.event.DefaultEventHistory
 
DefaultEventService - Class in org.scijava.event
Default service for publishing and subscribing to SciJava events.
DefaultEventService() - Constructor for class org.scijava.event.DefaultEventService
 
DefaultFloatTable - Class in org.scijava.table
Default implementation of FloatTable.
DefaultFloatTable() - Constructor for class org.scijava.table.DefaultFloatTable
Creates an empty float table.
DefaultFloatTable(int, int) - Constructor for class org.scijava.table.DefaultFloatTable
Creates a float table with the given row and column dimensions.
DefaultGenericTable - Class in org.scijava.table
Default implementation of GenericTable.
DefaultGenericTable() - Constructor for class org.scijava.table.DefaultGenericTable
Creates an empty table.
DefaultGenericTable(int, int) - Constructor for class org.scijava.table.DefaultGenericTable
Creates a table with the given row and column dimensions.
DefaultGrabService - Class in org.scijava.grab
Default implementation of GrabService.
DefaultGrabService() - Constructor for class org.scijava.grab.DefaultGrabService
 
DefaultInputService - Class in org.scijava.input
Default implementation of InputService.
DefaultInputService() - Constructor for class org.scijava.input.DefaultInputService
 
DefaultIntTable - Class in org.scijava.table
Default implementation of IntTable.
DefaultIntTable() - Constructor for class org.scijava.table.DefaultIntTable
Creates an empty int table.
DefaultIntTable(int, int) - Constructor for class org.scijava.table.DefaultIntTable
Creates a int table with the given row and column dimensions.
DefaultIOService - Class in org.scijava.io
Default implementation of IOService.
DefaultIOService() - Constructor for class org.scijava.io.DefaultIOService
 
DefaultJava3DService - Class in org.scijava.java3d
Default service for working with Java 3D.
DefaultJava3DService() - Constructor for class org.scijava.java3d.DefaultJava3DService
 
DefaultJavadocService - Class in org.scijava.search.javadoc
Default implementation of JavadocService.
DefaultJavadocService() - Constructor for class org.scijava.search.javadoc.DefaultJavadocService
 
DefaultJniExtractor - Class in org.scijava.nativelib
JniExtractor suitable for single application deployments per virtual machine
DefaultJniExtractor(Class<?>) - Constructor for class org.scijava.nativelib.DefaultJniExtractor
 
DefaultLanguageSupportService - Class in org.scijava.ui.swing.script
Default LanguageSupportService implementation.
DefaultLanguageSupportService() - Constructor for class org.scijava.ui.swing.script.DefaultLanguageSupportService
 
DefaultLocationService - Class in org.scijava.io.location
Default LocationService implementation.
DefaultLocationService() - Constructor for class org.scijava.io.location.DefaultLocationService
 
DefaultLogger - Class in org.scijava.log
Default implementation of Logger.
DefaultLogger(LogListener, LogSource, int) - Constructor for class org.scijava.log.DefaultLogger
 
DefaultLongTable - Class in org.scijava.table
Default implementation of LongTable.
DefaultLongTable() - Constructor for class org.scijava.table.DefaultLongTable
Creates an empty long table.
DefaultLongTable(int, int) - Constructor for class org.scijava.table.DefaultLongTable
Creates a long table with the given row and column dimensions.
DefaultMainService - Class in org.scijava.main
Default implementation of MainService.
DefaultMainService() - Constructor for class org.scijava.main.DefaultMainService
 
DefaultMATLABService - Class in org.scijava.plugins.scripting.matlab
Default MATLABService implementation.
DefaultMATLABService() - Constructor for class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
DefaultMenuService - Class in org.scijava.menu
Default service for keeping track of the application's menu structure.
DefaultMenuService() - Constructor for class org.scijava.menu.DefaultMenuService
 
DefaultModuleService - Class in org.scijava.module
Default service for keeping track of and executing available modules.
DefaultModuleService() - Constructor for class org.scijava.module.DefaultModuleService
 
DefaultMutableModule - Class in org.scijava.module
Default MutableModule implementation, intended for subclassing.
DefaultMutableModule() - Constructor for class org.scijava.module.DefaultMutableModule
 
DefaultMutableModule(MutableModuleInfo) - Constructor for class org.scijava.module.DefaultMutableModule
 
DefaultMutableModuleInfo - Class in org.scijava.module
Default MutableModuleInfo implementation.
DefaultMutableModuleInfo() - Constructor for class org.scijava.module.DefaultMutableModuleInfo
 
DefaultMutableModuleItem<T> - Class in org.scijava.module
Default MutableModuleItem implementation, for use with custom MutableModule implementations.
DefaultMutableModuleItem(Module, String, Class<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
 
DefaultMutableModuleItem(ModuleInfo, String, Class<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
 
DefaultMutableModuleItem(ModuleInfo, ModuleItem<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
Creates a new module item with the same values as the given item.
defaultName() - Method in interface org.scijava.io.location.Location
Gets the default name used when no explicit name is assigned.
DefaultNIOService - Class in org.scijava.io.nio
Default service for working with the java.nio package, particularly NIO ByteBuffer objects.
DefaultNIOService() - Constructor for class org.scijava.io.nio.DefaultNIOService
 
DefaultObjectService - Class in org.scijava.object
Default service for keeping track of registered objects.
DefaultObjectService() - Constructor for class org.scijava.object.DefaultObjectService
 
DefaultOptionsService - Class in org.scijava.options
Default service for keeping track of the available options and their settings.
DefaultOptionsService() - Constructor for class org.scijava.options.DefaultOptionsService
 
DefaultParseService - Class in org.scijava.parse
Default service for parsing strings.
DefaultParseService() - Constructor for class org.scijava.parse.DefaultParseService
 
DefaultPlatform - Class in org.scijava.platform
A platform implementation for default handling of platform issues.
DefaultPlatform() - Constructor for class org.scijava.platform.DefaultPlatform
 
DefaultPlatformService - Class in org.scijava.platform
Default service for handling platform-specific deployment issues.
DefaultPlatformService() - Constructor for class org.scijava.platform.DefaultPlatformService
 
DefaultPluginFinder - Class in org.scijava.plugin
Default SciJava plugin discovery mechanism.
DefaultPluginFinder() - Constructor for class org.scijava.plugin.DefaultPluginFinder
 
DefaultPluginFinder(ClassLoader) - Constructor for class org.scijava.plugin.DefaultPluginFinder
 
DefaultPluginService - Class in org.scijava.plugin
Default service for keeping track of available plugins.
DefaultPluginService() - Constructor for class org.scijava.plugin.DefaultPluginService
 
DefaultPrefService - Class in org.scijava.prefs
Default PrefService implementation, which persists preferences to disk using the Preferences API.
DefaultPrefService() - Constructor for class org.scijava.prefs.DefaultPrefService
 
DefaultRecentFileService - Class in org.scijava.io
Default service for managing the Recently Used Files menu.
DefaultRecentFileService() - Constructor for class org.scijava.io.DefaultRecentFileService
 
DefaultRunService - Class in org.scijava.run
Default service for managing available CodeRunner plugins.
DefaultRunService() - Constructor for class org.scijava.run.DefaultRunService
 
DefaultScriptHeaderService - Class in org.scijava.script
Default ScriptHeaderService implementation.
DefaultScriptHeaderService() - Constructor for class org.scijava.script.DefaultScriptHeaderService
 
DefaultScriptInterpreter - Class in org.scijava.script
The default implementation of a ScriptInterpreter.
DefaultScriptInterpreter(PrefService, ScriptService, ScriptLanguage) - Constructor for class org.scijava.script.DefaultScriptInterpreter
DefaultScriptInterpreter(ScriptLanguage) - Constructor for class org.scijava.script.DefaultScriptInterpreter
Creates a new script interpreter for the given script language.
DefaultScriptInterpreter(ScriptLanguage, ScriptEngine) - Constructor for class org.scijava.script.DefaultScriptInterpreter
Creates a new script interpreter for the given script language, using the specified script engine.
DefaultScriptProcessorService - Class in org.scijava.script.process
Default implementation of ScriptProcessorService.
DefaultScriptProcessorService() - Constructor for class org.scijava.script.process.DefaultScriptProcessorService
 
DefaultScriptService - Class in org.scijava.script
Default service for working with scripts.
DefaultScriptService() - Constructor for class org.scijava.script.DefaultScriptService
 
DefaultSearchAction - Class in org.scijava.search
Default implementation of SearchAction.
DefaultSearchAction(String, Runnable) - Constructor for class org.scijava.search.DefaultSearchAction
 
DefaultSearchAction(String, boolean, Runnable) - Constructor for class org.scijava.search.DefaultSearchAction
Deprecated.
Search actions may no longer demand that the search results be closed. Use DefaultSearchAction(String, Runnable) instead.
DefaultSearchOperation - Class in org.scijava.search
Default implementation of SearchOperation.
DefaultSearchOperation(Context, SearchListener...) - Constructor for class org.scijava.search.DefaultSearchOperation
 
DefaultSearchService - Class in org.scijava.search
Default implementation of SearchService.
DefaultSearchService() - Constructor for class org.scijava.search.DefaultSearchService
 
DefaultShortTable - Class in org.scijava.table
Default implementation of ShortTable.
DefaultShortTable() - Constructor for class org.scijava.table.DefaultShortTable
Creates an empty short table.
DefaultShortTable(int, int) - Constructor for class org.scijava.table.DefaultShortTable
Creates a short table with the given row and column dimensions.
DefaultStartupService - Class in org.scijava.startup
Default implementation of StartupService.
DefaultStartupService() - Constructor for class org.scijava.startup.DefaultStartupService
 
DefaultStatusService - Class in org.scijava.app
Default service for status notifications.
DefaultStatusService() - Constructor for class org.scijava.app.DefaultStatusService
 
DefaultTableDisplay - Class in org.scijava.table
Default display for Tables, including DoubleTables.
DefaultTableDisplay() - Constructor for class org.scijava.table.DefaultTableDisplay
 
DefaultTableIOPlugin - Class in org.scijava.table
Plugin for reading/writing GenericTables.
DefaultTableIOPlugin() - Constructor for class org.scijava.table.DefaultTableIOPlugin
 
DefaultTableIOService - Class in org.scijava.table.io
 
DefaultTableIOService() - Constructor for class org.scijava.table.io.DefaultTableIOService
 
DefaultTask - Class in org.scijava.task
Default implementation of Task.
DefaultTask(ThreadService, EventService) - Constructor for class org.scijava.task.DefaultTask
Creates a new task.
DefaultTaskService - Class in org.scijava.task
Default implementation of TaskService.
DefaultTaskService() - Constructor for class org.scijava.task.DefaultTaskService
 
DefaultTextDisplay - Class in org.scijava.display
Default display for text.
DefaultTextDisplay() - Constructor for class org.scijava.display.DefaultTextDisplay
 
DefaultTextIOService - Class in org.scijava.text.io
Default TextIOService implementation for opening and saving text data
DefaultTextIOService() - Constructor for class org.scijava.text.io.DefaultTextIOService
 
DefaultTextService - Class in org.scijava.text
Default service for working with text formats.
DefaultTextService() - Constructor for class org.scijava.text.DefaultTextService
 
DefaultThreadService - Class in org.scijava.thread
Default service for managing active threads.
DefaultThreadService() - Constructor for class org.scijava.thread.DefaultThreadService
 
DefaultToolService - Class in org.scijava.tool
Default service for keeping track of available tools, including which tool is active, and delegating UI events to the active tool.
DefaultToolService() - Constructor for class org.scijava.tool.DefaultToolService
 
DefaultTreeNode<T> - Class in org.scijava.util
Default implementation of TreeNode.
DefaultTreeNode(T, TreeNode<?>) - Constructor for class org.scijava.util.DefaultTreeNode
Creates a new tree node wrapping the given data, located in the tree beneath the specified parent.
DefaultUIService - Class in org.scijava.ui
Default service for handling SciJava user interfaces.
DefaultUIService() - Constructor for class org.scijava.ui.DefaultUIService
 
DefaultUncaughtExceptionHandler - Class in org.scijava.log
A handler for otherwise uncaught exceptions.
DefaultUncaughtExceptionHandler(LogService) - Constructor for class org.scijava.log.DefaultUncaughtExceptionHandler
 
defaultValue() - Method in class org.scijava.util.BoolArray
 
defaultValue() - Method in class org.scijava.util.ByteArray
 
defaultValue() - Method in class org.scijava.util.CharArray
 
defaultValue() - Method in class org.scijava.util.DoubleArray
 
defaultValue() - Method in class org.scijava.util.FloatArray
 
defaultValue() - Method in class org.scijava.util.IntArray
 
defaultValue() - Method in class org.scijava.util.LongArray
 
defaultValue() - Method in class org.scijava.util.ObjectArray
 
defaultValue() - Method in interface org.scijava.util.PrimitiveArray
 
defaultValue() - Method in class org.scijava.util.ShortArray
 
DefaultValuePreprocessor - Class in org.scijava.module.process
A preprocessor plugin that populates default parameter values.
DefaultValuePreprocessor() - Constructor for class org.scijava.module.process.DefaultValuePreprocessor
 
DefaultWelcomeService - Class in org.scijava.welcome
Default service for displaying the welcome greeting.
DefaultWelcomeService() - Constructor for class org.scijava.welcome.DefaultWelcomeService
 
DefaultWidgetModel - Class in org.scijava.widget
The backing data model for a particular InputWidget.
DefaultWidgetModel(Context, InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Constructor for class org.scijava.widget.DefaultWidgetModel
 
DefaultWidgetService - Class in org.scijava.widget
Default service for managing available InputWidgets.
DefaultWidgetService() - Constructor for class org.scijava.widget.DefaultWidgetService
 
DELAY_IN_MICROSECONDS - Static variable in class org.scijava.util.MirrorWebsite
 
delete(int, int) - Method in class org.scijava.util.AbstractPrimitiveArray
Shifts the array to delete space starting at a specified index.
delete(int, int) - Method in interface org.scijava.util.PrimitiveArray
Shifts the array to delete space starting at a specified index.
deleteRecursively(File) - Static method in class org.scijava.util.FileUtils
Deletes a directory recursively.
DELIM - Static variable in class org.scijava.nativelib.NativeLibraryUtil
 
dependencies() - Method in class org.scijava.grab.DefaultGrabService
 
dependencies() - Method in interface org.scijava.grab.GrabService
Gets a table of dependencies which have previously been grabbed.
dependencies - Variable in class org.scijava.minimaven.MavenProject
 
dependencyManagement - Variable in class org.scijava.minimaven.MavenProject
 
Desktop - Interface in org.scijava.ui
Marker interface for MDI Desktop manager
destClass() - Method in class org.scijava.convert.ConversionRequest
 
destination() - Method in interface org.scijava.download.Download
 
destroy() - Method in class org.scijava.ui.swing.script.FileSystemTree
 
destType() - Method in class org.scijava.convert.ConversionRequest
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.awt.AWTUI
 
DialogPrompt - Interface in org.scijava.ui
TODO
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.headless.HeadlessUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.swing.sdi.SwingSDIUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in interface org.scijava.ui.UserInterface
Creates a dialog prompter.
DialogPrompt.MessageType - Enum in org.scijava.ui
 
DialogPrompt.OptionType - Enum in org.scijava.ui
 
DialogPrompt.Result - Enum in org.scijava.ui
 
DialogPromptDemo - Class in org.scijava.ui.swing.commands
A demonstration of SciJava's UI-agnostic dialog prompt capabilities.
DialogPromptDemo() - Constructor for class org.scijava.ui.swing.commands.DialogPromptDemo
 
die(String) - Method in class org.scijava.parsington.Position
Throws IllegalArgumentException when syntax is incorrect.
digest(String, byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the given byte array's hash value according to the specified algorithm.
DigestUtils - Class in org.scijava.util
Utility class for computing cryptographic hashes.
DIMGRAY - Static variable in class org.scijava.util.Colors
 
DIMGREY - Static variable in class org.scijava.util.Colors
 
DirectiveScriptProcessor - Class in org.scijava.script.process
Abstract base class for ScriptProcessor plugins that parse lines of the form #@directive(...) ....
DirectiveScriptProcessor(Predicate<String>) - Constructor for class org.scijava.script.process.DirectiveScriptProcessor
 
DIRECTORIES_ONLY - Static variable in interface org.scijava.widget.FileListWidget
Widget style to allow directory selection only
directory - Variable in class org.scijava.minimaven.MavenProject
 
directory - Variable in class org.scijava.ui.swing.script.FileFunctions.GrepLineHandler
 
DIRECTORY_STYLE - Static variable in interface org.scijava.widget.FileWidget
Widget style for directory chooser dialogs.
directoryCallback() - Method in class org.scijava.batch.FileScriptBatchProcessor
Count all applicable files and display them in the dialog message
directoryCallback() - Method in class org.scijava.batch.MenuScriptBatchProcessor
Count all applicable files and display them in the dialog message
DirectoryIndexer - Class in org.scijava.annotations
Indexes a directory of classes.
DirectoryIndexer() - Constructor for class org.scijava.annotations.DirectoryIndexer
 
DISABLE_CHECKSUMS_SETTING - Static variable in class org.scijava.grab.DefaultGrabService
 
discover() - Method in class org.scijava.plugin.PluginIndex
Adds all plugins discovered by the attached PluginFinder to this index, or does nothing if the attached PluginFinder is null.
discoverAnnotations(File, String, ClassLoader) - Method in class org.scijava.annotations.DirectoryIndexer
 
discoverJavac() - Static method in class org.scijava.minimaven.JavaCompiler
 
DiskLocationCache - Class in org.scijava.download
A file-based implementation of LocationCache.
DiskLocationCache() - Constructor for class org.scijava.download.DiskLocationCache
 
dispatchKeyEvent(KeyEvent) - Method in class org.scijava.ui.behaviour.GlobalKeyEventDispatcher
 
dispatchToEDT(Runnable) - Static method in class org.scijava.ui.swing.StaticSwingUtils
dispatchToEDTWait(Runnable) - Static method in class org.scijava.ui.swing.StaticSwingUtils
display() - Method in class org.scijava.AbstractGateway
 
display(Object) - Method in class org.scijava.display.AbstractDisplay
 
Display<T> - Interface in org.scijava.display
A display is a particular type of plugin intended to collect objects for visualization.
display(Object) - Method in interface org.scijava.display.Display
Displays the given object in this display.
display() - Method in interface org.scijava.Gateway
Gets this application context's DisplayService.
display(Object) - Method in class org.scijava.table.DefaultTableDisplay
 
Displayable - Interface in org.scijava.display
An interface used by classes that can draw on demand.
DisplayActivatedEvent - Class in org.scijava.display.event
An event indicating a display has become the active one.
DisplayActivatedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayActivatedEvent
 
DisplayCreatedEvent - Class in org.scijava.display.event
An event indicating a new display has been created.
DisplayCreatedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayCreatedEvent
 
DisplayDeletedEvent - Class in org.scijava.display.event
An event indicating a display has been deleted.
DisplayDeletedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayDeletedEvent
 
DisplayEvent - Class in org.scijava.display.event
An event indicating something has happened to a Display.
DisplayEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayEvent
 
DisplayPanel - Interface in org.scijava.ui.viewer
The panel housing a particular Display.
DisplayPostprocessor - Class in org.scijava.display
Displays outputs upon completion of a module execution.
DisplayPostprocessor() - Constructor for class org.scijava.display.DisplayPostprocessor
 
DisplayService - Interface in org.scijava.display
Interface for service that tracks available Displays.
DisplayUpdatedEvent - Class in org.scijava.display.event
An event indicating a display has updated; e.g., an object has been added or removed.
DisplayUpdatedEvent(Display<?>, DisplayUpdatedEvent.DisplayUpdateLevel) - Constructor for class org.scijava.display.event.DisplayUpdatedEvent
 
DisplayUpdatedEvent.DisplayUpdateLevel - Enum in org.scijava.display.event
The display update level gives a hint about how much work needs to be done during the update.
DisplayViewer<T> - Interface in org.scijava.ui.viewer
A display viewer is a UI widget that shows a display to a user.
displayWelcome() - Method in class org.scijava.welcome.DefaultWelcomeService
 
displayWelcome() - Method in interface org.scijava.welcome.WelcomeService
Displays the welcome greeting.
DisplayWindow - Interface in org.scijava.ui.viewer
A user interface window associated with a Display, containing a DisplayPanel.
Disposable - Interface in org.scijava
An object that knows how to clean up after itself.
dispose() - Method in class org.scijava.console.DefaultConsoleService
 
dispose() - Method in class org.scijava.Context
 
dispose() - Method in interface org.scijava.Disposable
Performs any needed cleanup of the object's services, in preparation for the object being retired (e.g., to make garbage collection possible).
dispose() - Method in class org.scijava.event.DefaultEventService
 
dispose() - Method in interface org.scijava.Gateway
 
dispose() - Method in class org.scijava.io.DefaultRecentFileService
 
dispose() - Method in class org.scijava.platform.DefaultPlatformService
 
dispose() - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform
 
dispose() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
dispose() - Method in class org.scijava.thread.DefaultThreadService
 
dispose() - Method in class org.scijava.ui.awt.AWTUI
 
dispose() - Method in class org.scijava.ui.DefaultUIService
 
dispose() - Method in class org.scijava.ui.headless.HeadlessUI
 
dispose() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
dispose() - Method in class org.scijava.ui.swing.script.InterpreterPane
 
dispose() - Method in class org.scijava.ui.swing.script.InterpreterWindow
 
dispose() - Method in interface org.scijava.ui.viewer.DisplayViewer
 
div(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
div(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
div(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
div(float, float) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
div(double, double) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
div(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
div(BigDecimal, BigDecimal) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
div(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DIV operator.
DIV - Static variable in class org.scijava.parsington.Operators
 
DIV_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
divAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
divAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DIV_ASSIGN operator.
DocumentSizeFilter - Class in org.scijava.ui.swing.widget
A DocumentFilter that limits maximum number of characters.
DocumentSizeFilter(int) - Constructor for class org.scijava.ui.swing.widget.DocumentSizeFilter
 
DODGERBLUE - Static variable in class org.scijava.util.Colors
 
done - Variable in class org.scijava.util.ReadInto
 
done() - Method in class org.scijava.util.ReadInto
 
doRefresh() - Method in class org.scijava.batch.SwingScriptInfoWidget
 
doRefresh() - Method in class org.scijava.ui.AbstractUIInputWidget
Performs the intended AbstractUIInputWidget.refreshWidget() operation.
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTButtonWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTChoiceWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTObjectWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTTextWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTToggleWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingButtonWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingToggleWidget
 
dot(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
dot(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT operator.
DOT - Static variable in class org.scijava.parsington.Operators
 
DOT_DIV - Static variable in class org.scijava.parsington.Operators
 
DOT_DIV_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
DOT_MUL - Static variable in class org.scijava.parsington.Operators
 
DOT_POW - Static variable in class org.scijava.parsington.Operators
 
DOT_POW_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
DOT_RIGHT_DIV - Static variable in class org.scijava.parsington.Operators
 
DOT_RIGHT_DIV_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
DOT_TRANSPOSE - Static variable in class org.scijava.parsington.Operators
 
dotDiv(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
dotDiv(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT_DIV operator.
dotDivAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
dotDivAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT_DIV_ASSIGN operator.
dotMul(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
dotMul(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT_MUL operator.
dotPow(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
dotPow(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT_POW operator.
dotPowAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
dotPowAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT_POW_ASSIGN operator.
dotRightDiv(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
dotRightDiv(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT_RIGHT_DIV operator.
dotRightDivAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
dotRightDivAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT_RIGHT_DIV_ASSIGN operator.
dotTranspose(Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
dotTranspose(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.DOT_TRANSPOSE operator.
DOUBLE_CLICK_INTERVAL - Static variable in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
DOUBLE_CLICK_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
DoubleArray - Class in org.scijava.util
An extensible array of double elements.
DoubleArray() - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by a fixed-size array.
DoubleArray(int) - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by a fixed-size array.
DoubleArray(double[]) - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by the given fixed-size array.
DoubleArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper
 
DoubleArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.DoubleArrayWrapper
 
DoubleColumn - Class in org.scijava.table
Efficient implementation of Column for double primitives.
DoubleColumn() - Constructor for class org.scijava.table.DoubleColumn
 
DoubleColumn(String) - Constructor for class org.scijava.table.DoubleColumn
 
DoubleTable - Interface in org.scijava.table
A table of double-precision floating point values.
DoubleToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.DoubleToBigDecimalConverter
 
download(Location, Location) - Method in class org.scijava.download.DefaultDownloadService
 
download(Location, Location, LocationCache) - Method in class org.scijava.download.DefaultDownloadService
 
Download - Interface in org.scijava.download
Object representing an asynchronous download task.
download(Location, Location) - Method in interface org.scijava.download.DownloadService
Downloads data from the given source, storing it into the given destination.
download(Location, Location, LocationCache) - Method in interface org.scijava.download.DownloadService
Downloads data from the given source, storing it into the given destination.
download(URL, File, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
download(URL, File, String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
download() - Method in class org.scijava.minimaven.MavenProject
 
download(Coordinate, boolean) - Method in class org.scijava.minimaven.MavenProject
 
downloadAndVerify(String, Coordinate, boolean) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAndVerify(String, File, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAndVerify(String, File, String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAutomatically - Variable in class org.scijava.minimaven.BuildEnvironment
 
downloadDependencies() - Method in class org.scijava.minimaven.MavenProject
 
DownloadService - Interface in org.scijava.download
Service for managing retrieval of remote resources.
downOctave() - Method in class org.scijava.util.TunePlayer
 
drag(int, int) - Method in interface org.scijava.ui.behaviour.DragBehaviour
Mouse was dragged.
DragAndDropData - Interface in org.scijava.ui.dnd
Interface for drag-and-drop data.
DragAndDropEvent - Class in org.scijava.ui.dnd.event
An event indicating drag-and-drop activity in a display.
DragAndDropEvent(Display<?>) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropEvent(Display<?>, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropHandler<D> - Interface in org.scijava.ui.dnd
Interface for drag-and-drop handlers.
DragAndDropService - Interface in org.scijava.ui.dnd
Interface for service that handles drag and drop events.
DragBehaviour - Interface in org.scijava.ui.behaviour
 
dragEnter(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragEnterEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged onto a display.
DragEnterEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragEnterEvent
 
dragExit(DropTargetEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragExitEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged off of a display.
DragExitEvent(Display<?>) - Constructor for class org.scijava.ui.dnd.event.DragExitEvent
 
dragOver(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragOverEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged within a display.
DragOverEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragOverEvent
 
draw() - Method in interface org.scijava.display.Displayable
Render self when called.
drawIcon() - Method in interface org.scijava.tool.CustomDrawnTool
 
drop(DropTargetDropEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
drop(D, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data object in the specified Display.
drop(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Performs a drag-and-drop operation in the given display with the specified DragAndDropData, using the first available compatible handler.
drop(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Performs a drag-and-drop operation in the given display with the specified data object, using the first available compatible handler.
drop(File, Display<?>) - Method in class org.scijava.ui.dnd.FileDragAndDropHandler
 
drop(List<?>, Display<?>) - Method in class org.scijava.ui.dnd.ListDragAndDropHandler
 
drop(File, Display<?>) - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler
 
dropActionChanged(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
dropData(DragAndDropData, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
dropData(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data in the specified Display.
DropEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dropped onto a display.
DropEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DropEvent
 
dropObject(Object, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
dropObject(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data in the specified Display.
dualToImportStatement(String, String) - Method in interface org.scijava.ui.swing.script.autocompletion.ImportFormat
 
dualToImportStatement(String, String) - Method in class org.scijava.ui.swing.script.autocompletion.JythonImportFormat
 
DummyHandle - Class in org.scijava.io.handle
A DataHandle which reads all zeroes, and writes no actual data.
DummyHandle() - Constructor for class org.scijava.io.handle.DummyHandle
 
DummyLocation - Class in org.scijava.io.location
Location backed by nothing whatsoever.
DummyLocation() - Constructor for class org.scijava.io.location.DummyLocation
 
DummyTool - Class in org.scijava.tool
A tool that does nothing.
DummyTool() - Constructor for class org.scijava.tool.DummyTool
 
dumpStack() - Method in class org.scijava.event.SciJavaEvent
Gets a stack trace for the calling thread when the event was published.
DumpStack - Class in org.scijava.plugins.commands.debug
Provides a complete stack dump of all threads.
DumpStack() - Constructor for class org.scijava.plugins.commands.debug.DumpStack
 
DynamicCommand - Class in org.scijava.command
A command with a variable number of inputs and outputs.
DynamicCommand() - Constructor for class org.scijava.command.DynamicCommand
 
DynamicCommandInfo - Class in org.scijava.command
Helper class for maintaining a DynamicCommand's associated ModuleInfo.
DynamicCommandInfo(CommandInfo, Class<? extends DynamicCommand>) - Constructor for class org.scijava.command.DynamicCommandInfo
 

E

EasySwingDisplayViewer<T> - Class in org.scijava.ui.swing.viewer
Class helping to build a simple Swing JPanel viewer for any object of class T declared as a ItemIO output Parameter in a Command.
EasySwingDisplayViewer(Class<T>) - Constructor for class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
EasySwingDisplayViewer.SwingDisplayPanel - Class in org.scijava.ui.swing.viewer
 
EclipseHelper - Class in org.scijava.annotations
Helps Eclipse's lack of support for annotation processing in incremental build mode.
EclipseHelper() - Constructor for class org.scijava.annotations.EclipseHelper
 
ECMAScriptHighlighter - Class in org.scijava.ui.swing.script.highliters
SyntaxHighliter for "ecmascript".
ECMAScriptHighlighter() - Constructor for class org.scijava.ui.swing.script.highliters.ECMAScriptHighlighter
 
EDIT_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
EDIT_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
EDIT_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
EditorPane - Class in org.scijava.ui.swing.script
Main text editing component of the script editor, based on RSyntaxTextArea.
EditorPane() - Constructor for class org.scijava.ui.swing.script.EditorPane
Constructor.
editorPane - Variable in class org.scijava.ui.swing.script.TextEditorTab
 
elements(String) - Method in class org.scijava.util.XML
Obtains the elements identified by the given XPath expression.
elements(NodeList) - Static method in class org.scijava.util.XML
Gets the element nodes from the given node list.
elements(Element, String) - Static method in class org.scijava.util.XML
Gets the given element's specified child elements.
embedWithScrollbars(Container) - Method in class org.scijava.ui.swing.script.EditorPane
Add this EditorPane with scrollbars to a container.
emptyLineAt(int) - Method in class org.scijava.ui.swing.script.TokenFunctions
 
enabled(Searcher) - Method in class org.scijava.search.DefaultSearchService
 
enabled(Searcher) - Method in interface org.scijava.search.SearchService
Gets whether the given searcher plugin is currently enabled.
end() - Method in class org.scijava.grab.script.process.GrabScriptProcessor
 
end() - Method in class org.scijava.script.process.ParameterScriptProcessor
 
end() - Method in interface org.scijava.script.process.ScriptProcessor
 
end(int, int) - Method in interface org.scijava.ui.behaviour.DragBehaviour
Possibly end the behaviour.
endElement(String, String, String) - Method in class org.scijava.minimaven.AbstractPOMHandler
 
endLine - Variable in class org.scijava.minimaven.BuildEnvironment
 
engineScopeBindings - Variable in class org.scijava.script.AbstractScriptEngine
 
ensure(int) - Method in class org.scijava.util.LineOutputStream
Increases the size of the line buffer if necessary.
ensureCache() - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
ensureCapacity(int) - Method in class org.scijava.util.AbstractPrimitiveArray
 
ensureCapacity(int) - Method in interface org.scijava.util.PrimitiveArray
Makes sure the backing array at least a specified capacity.
ensureCapacity(int) - Method in class org.scijava.util.SizableArrayList
 
ensureOpen() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
ensureOpen() - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
ensureReadable(long) - Method in interface org.scijava.io.handle.DataHandle
Ensures that the handle has sufficient bytes available to read.
ensureReadable(long) - Method in interface org.scijava.io.handle.StreamHandle
 
ensureSciJavaSubURLCache() - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
ensureSizeReasonable(Window) - Static method in class org.scijava.ui.awt.AWTWindows
Limits the size of the given window to fit onscreen.
ensureWritable(long) - Method in interface org.scijava.io.handle.DataHandle
Ensures that the handle has the correct length to be written to, and extends it as required.
ensureWritable(long) - Method in interface org.scijava.io.handle.StreamHandle
 
entrySet() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
enumValue(String, Class<T>) - Static method in class org.scijava.util.Types
Converts the given string value to an enumeration constant of the specified type.
env - Variable in class org.scijava.minimaven.MavenProject
 
EOL_COMMENT - Static variable in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
lexical states
EOL_COMMENT - Static variable in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
lexical states
eolAt(int) - Method in class org.scijava.ui.swing.script.TokenFunctions
 
equal(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
equal(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.EQUAL operator.
EQUAL - Static variable in class org.scijava.parsington.Operators
 
equal(Object, Object) - Static method in class org.scijava.util.MiscUtils
Deprecated.
equals(Object) - Method in class org.scijava.input.Accelerator
 
equals(Object) - Method in class org.scijava.input.InputModifiers
 
equals(Object) - Method in class org.scijava.io.location.AbstractLocation
 
equals(Object) - Method in class org.scijava.io.location.BytesLocation
 
equals(Object) - Method in class org.scijava.minimaven.MavenProject
 
equals(Object) - Method in class org.scijava.parsington.SyntaxTree
 
equals(Object) - Method in class org.scijava.ui.behaviour.InputTrigger
 
equals(Object) - Method in class org.scijava.ui.behaviour.io.gui.Command
 
equals(Object) - Method in class org.scijava.ui.dnd.MIMEType
 
equals(Object) - Method in class org.scijava.util.ColorRGB
 
equals(Object) - Method in class org.scijava.util.IntCoords
 
equals(Object) - Method in class org.scijava.util.IntRect
 
equals(Object) - Method in class org.scijava.util.RealCoords
 
equals(Object) - Method in class org.scijava.util.RealRect
 
err - Variable in class org.scijava.minimaven.BuildEnvironment
 
err - Variable in class org.scijava.minimaven.JavaCompiler
 
err - Variable in class org.scijava.minimaven.ReadInto
 
error(Object) - Method in interface org.scijava.log.Logger
 
error(Throwable) - Method in interface org.scijava.log.Logger
 
error(Object, Throwable) - Method in interface org.scijava.log.Logger
 
ERROR - Static variable in class org.scijava.log.LogLevel
 
ERROR - Static variable in interface org.scijava.log.LogService
Deprecated.
error(String) - Method in class org.scijava.ui.swing.script.FileFunctions
 
ErrorHandler - Class in org.scijava.ui.swing.script
TODO
ErrorHandler(JTextArea) - Constructor for class org.scijava.ui.swing.script.ErrorHandler
 
ErrorHandler(ScriptLanguage, JTextArea, int) - Constructor for class org.scijava.ui.swing.script.ErrorHandler
 
errorHandler - Variable in class org.scijava.ui.swing.script.FileFunctions.GrepLineHandler
 
errorWriter - Variable in class org.scijava.script.AbstractScriptContext
 
eval(String) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
eval(String) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
eval(ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyCompiledScript
 
eval(Reader, ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
eval(String) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
eval(Reader) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
eval(String) - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptEngine
 
eval(String) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader, ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, Bindings) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader, Bindings) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader, ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String, Bindings) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader, Bindings) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String) - Method in class org.scijava.script.DefaultScriptInterpreter
 
eval(String) - Method in interface org.scijava.script.ScriptInterpreter
Evaluates a command.
evaluate(SyntaxTree) - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
evaluate(String) - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
evaluate(LinkedList<Object>) - Method in class org.scijava.parsington.eval.AbstractStackEvaluator
 
evaluate(String) - Method in interface org.scijava.parsington.eval.Evaluator
Evaluates the given infix expression, returning the result.
evaluate(LinkedList<Object>) - Method in interface org.scijava.parsington.eval.Evaluator
Evaluates the given postfix token queue, returning the result.
evaluate(SyntaxTree) - Method in interface org.scijava.parsington.eval.Evaluator
Evaluates the given syntax tree, returning the result.
evaluate(String) - Method in class org.scijava.script.ScriptREPL
Evaluates the line, including handling of special colon-prefixed REPL commands.
Evaluator - Interface in org.scijava.parsington.eval
Interface for expression evaluators.
EvaluatorConsole - Class in org.scijava.parsington.eval
A simple console-driven expression evaluator.
EvaluatorConsole() - Constructor for class org.scijava.parsington.eval.EvaluatorConsole
 
EvaluatorConsole(Evaluator) - Constructor for class org.scijava.parsington.eval.EvaluatorConsole
 
event() - Method in class org.scijava.AbstractGateway
 
event() - Method in interface org.scijava.Gateway
Gets this application context's EventService.
EventDetails - Class in org.scijava.event
Caches details of a particular SciJavaEvent, without saving the event itself (since doing so could leave dangling references).
EventDetails(SciJavaEvent) - Constructor for class org.scijava.event.EventDetails
 
EventHandler - Annotation Type in org.scijava.event
Annotation identifying an event handler method.
eventHistory() - Method in class org.scijava.AbstractGateway
 
EventHistory - Interface in org.scijava.event
Interface for service that keeps a history of SciJava events.
eventHistory() - Method in interface org.scijava.Gateway
Gets this application context's EventHistory.
EventHistoryListener - Interface in org.scijava.event
Listener for event history changes.
eventOccurred(EventDetails) - Method in interface org.scijava.event.EventHistoryListener
 
eventOccurred(EventDetails) - Method in class org.scijava.ui.swing.commands.WatchEvents
 
eventService() - Method in interface org.scijava.command.CommandService
 
eventService() - Method in class org.scijava.command.DefaultCommandService
 
eventService() - Method in class org.scijava.display.DefaultDisplayService
 
eventService() - Method in interface org.scijava.display.DisplayService
 
EventService - Interface in org.scijava.event
Interface for the event handling service.
eventService() - Method in class org.scijava.input.DefaultInputService
 
eventService() - Method in interface org.scijava.input.InputService
 
eventService() - Method in class org.scijava.object.DefaultObjectService
 
eventService() - Method in interface org.scijava.object.ObjectService
 
eventService - Variable in class org.scijava.options.OptionsPlugin
 
eventService() - Method in class org.scijava.platform.DefaultPlatformService
 
eventService() - Method in interface org.scijava.platform.PlatformService
 
EventSubscriber<E extends SciJavaEvent> - Interface in org.scijava.event
Interface for subscribers that wish to be notified of SciJava events.
ExceptionHandler - Class in org.scijava.ui.swing.script
TODO
excludedFromMultiProjects - Variable in class org.scijava.minimaven.BuildEnvironment
 
excludeFromMultiProjects(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
exclusions - Variable in class org.scijava.minimaven.Coordinate
 
exclusive(String) - Method in interface org.scijava.search.Searcher
Gets whether this plugin wants exclusive rights to the given text.
exclusive() - Method in class org.scijava.search.SearchEvent
 
exclusive(String) - Method in class org.scijava.search.snippet.SnippetSearcher
 
exec() - Method in interface org.scijava.main.MainService.Main
Runs the main method with the associated arguments.
exec(File, String...) - Method in class org.scijava.minimaven.BuildEnvironment
 
exec(String...) - Method in class org.scijava.platform.DefaultPlatformService
 
exec(String...) - Method in interface org.scijava.platform.PlatformService
Executes a native program and waits for it to return.
exec(File, PrintStream, PrintStream, String...) - Static method in class org.scijava.util.ProcessUtils
Executes a program.
exec(File, InputStream, PrintStream, PrintStream, String...) - Static method in class org.scijava.util.ProcessUtils
Executes a program.
exec(String) - Method in class org.scijava.util.ReflectedUniverse
Executes a command in the universe.
execMains() - Method in class org.scijava.main.DefaultMainService
 
execMains() - Method in interface org.scijava.main.MainService
Executes registered main classes, in the order they were registered.
execute(String[], File, boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
execute(Object, Object...) - Method in class org.scijava.module.MethodRef
 
execute(Operator, Deque<Object>) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
execute(Operator, Deque<Object>) - Method in interface org.scijava.parsington.eval.StackEvaluator
Executes the given operation with the specified value stack.
executeOperations() - Method in class org.scijava.startup.DefaultStartupService
 
executeOperations() - Method in interface org.scijava.startup.StartupService
Execute all registered startup operations, in the order they were registered, blocking until complete.
exists() - Method in class org.scijava.download.MultiWriteHandle
 
exists() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
exists() - Method in class org.scijava.io.handle.BytesHandle
 
exists() - Method in interface org.scijava.io.handle.DataHandle
Tests whether this handle's location actually exists at the source.
exists(Location) - Method in interface org.scijava.io.handle.DataHandleService
Convenience method to test whether it describes an existing file.
exists() - Method in class org.scijava.io.handle.DummyHandle
 
exists() - Method in class org.scijava.io.handle.FileHandle
 
exists() - Method in class org.scijava.io.http.HTTPHandle
 
expand(Coordinate) - Method in class org.scijava.minimaven.MavenProject
 
expand(String) - Method in class org.scijava.minimaven.MavenProject
 
expandTo(String, TreePath[]) - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
Recursive expansion until opening the final element of the path
ExportTableCommand - Class in org.scijava.table.io
 
ExportTableCommand() - Constructor for class org.scijava.table.io.ExportTableCommand
 
ExpressionParser - Class in org.scijava.parsington
A parser for mathematical expressions, using Dijkstra's famous shunting-yard algorithm.
ExpressionParser() - Constructor for class org.scijava.parsington.ExpressionParser
Creates an expression parser with the default set of operators.
ExpressionParser(Collection<? extends Operator>) - Constructor for class org.scijava.parsington.ExpressionParser
Creates an expression parser with the given set of operators.
extractJni(String, String) - Method in class org.scijava.nativelib.BaseJniExtractor
 
extractJni(String, String) - Method in interface org.scijava.nativelib.JniExtractor
Extract a JNI library from the classpath to a temporary file.
extractRegistered() - Method in class org.scijava.nativelib.BaseJniExtractor
 
extractRegistered() - Method in interface org.scijava.nativelib.JniExtractor
Extract all libraries which are registered for auto-extraction to files in the temporary directory.
extractRegistered() - Static method in class org.scijava.nativelib.NativeLoader
Extract all libraries registered for auto-extraction by way of META-INF/lib/AUTOEXTRACT.LIST resources.
extractSourceJar(String, File) - Method in class org.scijava.ui.swing.script.FileFunctions
 
extractSourceJar() - Method in class org.scijava.ui.swing.script.TextEditor
 
extractSourceJar(File) - Method in class org.scijava.ui.swing.script.TextEditor
 
EXTREMELY_HIGH - Static variable in class org.scijava.Priority
Priority for items that very strongly prefer to be sorted early.
EXTREMELY_LOW - Static variable in class org.scijava.Priority
Priority for items that very strongly prefer to be sorted late.

F

FactoryPlugin<D,O> - Interface in org.scijava.plugin
Interface for plugins that act as factories, creating objects on demand.
fail(String) - Method in class org.scijava.parsington.Position
Throws IllegalStateException when something is wrong.
fakePOM(File, Coordinate) - Method in class org.scijava.minimaven.BuildEnvironment
 
field(Class<?>, String) - Static method in class org.scijava.util.Types
Gets the field with the specified name, of the given class, or superclass thereof.
FIELD_STYLE - Static variable in interface org.scijava.widget.TextWidget
Widget style for text fields.
fieldType(Field, Class<?>) - Static method in class org.scijava.util.Types
Returns the "safe" generic type of the given field, as viewed from the given type.
file2pom - Variable in class org.scijava.minimaven.BuildEnvironment
 
FILE_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
FILE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
FILE_NAME - Static variable in class org.scijava.util.CheckSezpoz
Deprecated.
FILE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
FileArrayToStringConverter() - Constructor for class org.scijava.convert.FileListConverters.FileArrayToStringConverter
 
FileBatchInputProvider - Class in org.scijava.batch.input
 
FileBatchInputProvider() - Constructor for class org.scijava.batch.input.FileBatchInputProvider
 
FileBatchService - Class in org.scijava.batch
 
FileBatchService() - Constructor for class org.scijava.batch.FileBatchService
 
fileChanged() - Method in class org.scijava.ui.swing.script.EditorPane
 
fileChanged() - Method in class org.scijava.ui.swing.script.TextEditor
 
FileDragAndDropHandler - Class in org.scijava.ui.dnd
Drag-and-drop handler for files.
FileDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.FileDragAndDropHandler
 
FileFunctions - Class in org.scijava.ui.swing.script
TODO
FileFunctions(TextEditor) - Constructor for class org.scijava.ui.swing.script.FileFunctions
 
FileFunctions.GrepLineHandler - Class in org.scijava.ui.swing.script
 
FileFunctions.LengthWarner - Class in org.scijava.ui.swing.script
 
FileFunctions.ScreenOutputStream - Class in org.scijava.ui.swing.script
 
FileFunctions.TextWrapper - Class in org.scijava.ui.swing.script
 
FileHandle - Class in org.scijava.io.handle
FileHandle() - Constructor for class org.scijava.io.handle.FileHandle
 
FileListConverters - Class in org.scijava.convert
A collection of Converter plugins for going between String, File and File[].
FileListConverters() - Constructor for class org.scijava.convert.FileListConverters
 
FileListConverters.FileArrayToStringConverter - Class in org.scijava.convert
 
FileListConverters.FileToStringConverter - Class in org.scijava.convert
 
FileListConverters.StringToFileArrayConverter - Class in org.scijava.convert
 
FileListConverters.StringToFileConverter - Class in org.scijava.convert
 
FileListPreprocessor - Class in org.scijava.ui
 
FileListPreprocessor() - Constructor for class org.scijava.ui.FileListPreprocessor
 
FileListWidget<U> - Interface in org.scijava.widget
 
FileLocation - Class in org.scijava.io.location
Location backed by a File on disk.
FileLocation(File) - Constructor for class org.scijava.io.location.FileLocation
 
FileLocation(String) - Constructor for class org.scijava.io.location.FileLocation
 
FileLocation(URI) - Constructor for class org.scijava.io.location.FileLocation
 
FileLocationResolver - Class in org.scijava.io.location
Implementation of LocationResolver for FileLocation.
FileLocationResolver() - Constructor for class org.scijava.io.location.FileLocationResolver
 
FilePreprocessor - Class in org.scijava.ui
A preprocessor plugin that handles single unresolved parameters of type File using a UI prompt.
FilePreprocessor() - Constructor for class org.scijava.ui.FilePreprocessor
 
FILES_AND_DIRECTORIES - Static variable in interface org.scijava.widget.FileListWidget
Widget style to allow selection of both files and directories
FILES_ONLY - Static variable in interface org.scijava.widget.FileListWidget
Widget style to allow file selection only
FileScriptBatchProcessor - Class in org.scijava.batch
 
FileScriptBatchProcessor() - Constructor for class org.scijava.batch.FileScriptBatchProcessor
 
FileSystemTree - Class in org.scijava.ui.swing.script
 
FileSystemTree(Logger) - Constructor for class org.scijava.ui.swing.script.FileSystemTree
 
FileSystemTree.LeafListener - Interface in org.scijava.ui.swing.script
 
FileSystemTree.Node - Class in org.scijava.ui.swing.script
 
FileToStringConverter() - Constructor for class org.scijava.convert.FileListConverters.FileToStringConverter
 
FileUtils - Class in org.scijava.util
Useful methods for working with file paths.
FileWidget<U> - Interface in org.scijava.widget
Widget interface for file selectors.
fill(boolean[]) - Method in class org.scijava.table.BoolColumn
 
fill(boolean[], int) - Method in class org.scijava.table.BoolColumn
 
fill(byte[]) - Method in class org.scijava.table.ByteColumn
 
fill(byte[], int) - Method in class org.scijava.table.ByteColumn
 
fill(char[]) - Method in class org.scijava.table.CharColumn
 
fill(char[], int) - Method in class org.scijava.table.CharColumn
 
fill(double[]) - Method in class org.scijava.table.DoubleColumn
 
fill(double[], int) - Method in class org.scijava.table.DoubleColumn
 
fill(float[]) - Method in class org.scijava.table.FloatColumn
 
fill(float[], int) - Method in class org.scijava.table.FloatColumn
 
fill(int[]) - Method in class org.scijava.table.IntColumn
 
fill(int[], int) - Method in class org.scijava.table.IntColumn
 
fill(long[]) - Method in class org.scijava.table.LongColumn
 
fill(long[], int) - Method in class org.scijava.table.LongColumn
 
fill(ArrayType) - Method in interface org.scijava.table.PrimitiveColumn
Fills the column with the values in the given array.
fill(ArrayType, int) - Method in interface org.scijava.table.PrimitiveColumn
Fills the column with the values in the given array.
fill(short[]) - Method in class org.scijava.table.ShortColumn
 
fill(short[], int) - Method in class org.scijava.table.ShortColumn
 
fillInput(Module, ModuleItem<?>, I) - Method in interface org.scijava.batch.BatchService
Fill a provided ModuleItem with a given input object
fillInput(Module, ModuleItem<?>, I) - Method in class org.scijava.batch.FileBatchService
 
filterFiles(List<File>, FileFilter) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget
Filters the given list of files according to the specified FileFilter.
filterInstances(List<Platform>) - Method in class org.scijava.platform.DefaultPlatformService
 
filterInstances(List<PT>) - Method in interface org.scijava.plugin.SingletonService
Filters the given list of instances by this service's inclusion criteria.
finalize() - Method in class org.scijava.nativelib.WebappJniExtractor
 
find(DT) - Method in interface org.scijava.plugin.TypedService
Gets a new instance of the highest priority plugin managed by this service which supports the given data object according to the Typed interface.
findAllClasses(List<String>) - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
FindAndReplaceDialog - Class in org.scijava.ui.swing.script
TODO
FindAndReplaceDialog(TextEditor) - Constructor for class org.scijava.ui.swing.script.FindAndReplaceDialog
 
findClassDocumentationURLs(String) - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
findClassNamesContaining(String) - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
findClassNamesForPackage(String) - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
findClassNamesStartingWith(String) - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
FindClassSourceAndJavadoc(String) - Constructor for class org.scijava.ui.swing.script.TextEditor.FindClassSourceAndJavadoc
 
findDisplayContentScreenX() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
findDisplayContentScreenX() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
findDisplayContentScreenX() - Method in interface org.scijava.ui.viewer.DisplayWindow
Finds the x coordinate on the screen of the origin of the display window's content.
findDisplayContentScreenY() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
findDisplayContentScreenY() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
findDisplayContentScreenY() - Method in interface org.scijava.ui.viewer.DisplayWindow
Finds the y coordinate on the screen of the origin of the display window's content.
findDocumentationForClass(String) - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
findImportedClasses(String) - Static method in class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion
 
findInMultiProjects(Coordinate) - Method in class org.scijava.minimaven.MavenProject
 
findJavaPaths(File, String) - Method in class org.scijava.ui.swing.script.FileFunctions
 
findLocallyCachedVersion(String) - Method in class org.scijava.minimaven.MavenProject
 
findOrReplace(boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
findPackageNamesStartingWith(String) - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
findPlugins(List<PluginInfo<?>>) - Method in class org.scijava.plugin.DefaultPluginFinder
 
findPlugins(List<PluginInfo<?>>) - Method in interface org.scijava.plugin.PluginFinder
Populates the given list with all available SciJava plugins.
findPluginsOfClass(String, List<? extends PluginInfo<?>>, List<T>) - Static method in class org.scijava.plugin.DefaultPluginService
Transfers plugins of the given class from the source list to the destination list.
findPOM(Coordinate, boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
 
findPOM(MavenProject, String) - Static method in class org.scijava.minimaven.MiniMaven
 
findResources(String, String) - Static method in class org.scijava.ui.swing.script.FileFunctions
findResources(String, Iterable<URL>) - Static method in class org.scijava.ui.swing.script.FileFunctions
findResources(String, String, File) - Static method in class org.scijava.util.FileUtils
Finds URLs of available resources.
findResources(String, Iterable<URL>) - Static method in class org.scijava.util.FileUtils
Finds URLs of resources known to the system.
findScripts(List<ScriptInfo>) - Method in class org.scijava.script.ScriptFinder
Discovers the scripts.
findSimpleClassNamesStartingWith(String) - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
Find simple class names starting with "text", returning the fully qualified class names.
findSourcePath(String, File) - Method in class org.scijava.ui.swing.script.FileFunctions
 
findString(String...) - Method in interface org.scijava.io.handle.DataHandle
Reads a string ending with one of the given terminating substrings.
findString(boolean, String...) - Method in interface org.scijava.io.handle.DataHandle
Reads or skips a string ending with one of the given terminating substrings.
findString(int, String...) - Method in interface org.scijava.io.handle.DataHandle
Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(boolean, int, String...) - Method in interface org.scijava.io.handle.DataHandle
Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.
findUltimateParent(Component) - Method in class org.scijava.ui.swing.StaticSwingUtils
 
FIREBRICK - Static variable in class org.scijava.util.Colors
 
FIRST - Static variable in class org.scijava.Priority
Priority for items that must be sorted first.
first(List<T>) - Static method in class org.scijava.util.ListUtils
Gets the first element of the given list, or null if none.
FIRST_PRIORITY - Static variable in class org.scijava.Priority
Deprecated.
Use Priority.FIRST instead.
firstNLines(String, int) - Method in class org.scijava.ui.swing.script.FileFunctions
 
firstNonDigit(String) - Static method in class org.scijava.minimaven.BuildEnvironment
 
fix(File, File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
FloatArray - Class in org.scijava.util
An extensible array of float elements.
FloatArray() - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by a fixed-size array.
FloatArray(int) - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by a fixed-size array.
FloatArray(float[]) - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by the given fixed-size array.
FloatArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper
 
FloatArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.FloatArrayWrapper
 
FloatColumn - Class in org.scijava.table
Efficient implementation of Column for float primitives.
FloatColumn() - Constructor for class org.scijava.table.FloatColumn
 
FloatColumn(String) - Constructor for class org.scijava.table.FloatColumn
 
FloatTable - Interface in org.scijava.table
A table of float-precision floating point values.
FloatToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.FloatToBigDecimalConverter
 
FloatToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.FloatToDoubleConverter
 
FLORALWHITE - Static variable in class org.scijava.util.Colors
 
flush() - Method in class org.scijava.console.MultiOutputStream
 
flush() - Method in class org.scijava.io.handle.DataHandleOutputStream
 
flush() - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
 
flush() - Method in class org.scijava.ui.swing.script.JTextAreaWriter
 
flush() - Method in class org.scijava.util.LineOutputStream
If any bytes are in the current line buffer, output the line via LineOutputStream.println(String), stripping any trailing new-line characters.
flushQueue() - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
 
flushQueue() - Method in class org.scijava.ui.swing.script.JTextAreaWriter
 
focusGained(FocusEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
focusLost(FocusEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
focusTextFilter() - Method in class org.scijava.ui.swing.console.LoggingPanel
 
FOLDERS_PREFS - Static variable in class org.scijava.ui.swing.script.EditorPane
 
FONT_SIZE_PREFS - Static variable in class org.scijava.ui.swing.script.EditorPane
 
forceLoadClass(String) - Method in class org.scijava.minimaven.JarClassLoader
 
forEach(BiConsumer<String, Object>) - Method in class org.scijava.optional.AbstractOptions.AbstractValues
 
FORESTGREEN - Static variable in class org.scijava.util.Colors
 
format(LogMessage) - Method in class org.scijava.ui.swing.console.LogFormatter
 
format(double) - Static method in class org.scijava.util.UnitUtils
 
formatter() - Method in class org.scijava.table.io.ColumnTableIOOptions.Values
 
formatter(Function<Object, String>) - Method in class org.scijava.table.io.TableIOOptions
 
formatter() - Method in class org.scijava.table.io.TableIOOptions.Values
 
foundAnnotations() - Method in class org.scijava.annotations.AbstractIndexWriter
 
fromDouble(double, boolean) - Static method in class org.scijava.util.Bytes
Translates the double value into an array of eight bytes.
fromDoubles(double[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of double values into an array of byte values.
fromFloat(float, boolean) - Static method in class org.scijava.util.Bytes
Translates the float value into an array of four bytes.
fromFloats(float[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of float values into an array of byte values.
fromHSVColor(double, double, double) - Static method in class org.scijava.util.ColorRGB
 
fromHTMLColor(String) - Static method in class org.scijava.util.ColorRGB
Convert a string in the format specified by CSS Color Module Level 3 - W3C Recommendation 07 June 2011 to a ColorRGB object.
fromInt(int, boolean) - Static method in class org.scijava.util.Bytes
Translates the int value into an array of four bytes.
fromInts(int[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of int values into an array of byte values.
fromLong(long, boolean) - Static method in class org.scijava.util.Bytes
Translates the long value into an array of eight bytes.
fromLongs(long[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of long values into an array of byte values.
fromShort(short, boolean) - Static method in class org.scijava.util.Bytes
Translates the short value into an array of two bytes.
fromShorts(short[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of short values into an array of byte values.
FUCHSIA - Static variable in class org.scijava.util.Colors
 
function(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
function(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Function operator.
Function - Class in org.scijava.parsington
A function is an implicit binary operator between two "noun" tokens—typically between a variable on the left and a group on the right, in which case the function's precedence is inferred from the group.
Function(double) - Constructor for class org.scijava.parsington.Function
 

G

GAINSBORO - Static variable in class org.scijava.util.Colors
 
Gateway - Interface in org.scijava
Interface for convenience classes that wrap a Context to provide one-line access to a suite of Services.
GatewayPreprocessor - Class in org.scijava.module.process
The gateway preprocessor automatically populates module inputs that implement Gateway.
GatewayPreprocessor() - Constructor for class org.scijava.module.process.GatewayPreprocessor
 
GenericColumn - Class in org.scijava.table
A column that can consist of any Objects.
GenericColumn() - Constructor for class org.scijava.table.GenericColumn
 
GenericColumn(String) - Constructor for class org.scijava.table.GenericColumn
 
GenericTable - Interface in org.scijava.table
A flexible table capable of storing any values as Objects.
GenericUtils - Class in org.scijava.util
Deprecated.
Use Types instead.
get(String) - Method in class org.scijava.AbstractBasicDetails
 
get(Class<S>) - Method in class org.scijava.AbstractGateway
 
get(String) - Method in class org.scijava.AbstractGateway
 
get(String) - Method in interface org.scijava.BasicDetails
Gets the value of the given key, or null if undefined.
get(Object) - Method in interface org.scijava.cache.CacheService
 
get(Object, Callable<V>) - Method in interface org.scijava.cache.CacheService
 
get(Object) - Method in class org.scijava.cache.DefaultCacheService
 
get(Object) - Method in class org.scijava.cache.GuavaCacheService
 
get(Object, Callable<V>) - Method in class org.scijava.cache.GuavaCacheService
 
get(String) - Method in class org.scijava.command.CommandModuleItem
 
get(int) - Method in class org.scijava.display.AbstractDisplay
 
get(Class<S>) - Method in interface org.scijava.Gateway
Returns an implementation of the requested Service, if it exists in the underlying Context.
get(String) - Method in interface org.scijava.Gateway
Returns an implementation of the Service with the given class name, if it exists in the underlying Context.
get(int) - Static method in enum org.scijava.input.KeyCode
Gets the KeyCode corresponding to the given numeric code, or KeyCode.UNDEFINED if no such code.
get(String) - Static method in enum org.scijava.input.KeyCode
Gets the KeyCode with the given name, or KeyCode.UNDEFINED if no such code.
get() - Method in interface org.scijava.object.LazyObjects
Gets the collection of objects.
get(Class<?>) - Method in class org.scijava.object.ObjectIndex
Gets a list of registered objects compatible with the given type.
get(Variable) - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
get(Variable) - Method in interface org.scijava.parsington.eval.Evaluator
Gets the value of the given variable.
get() - Method in class org.scijava.parsington.Position
 
get() - Method in class org.scijava.plugin.AbstractWrapperPlugin
 
get(Class<P>, PluginIndex) - Static method in class org.scijava.plugin.PluginInfo
Finds a PluginInfo of the given plugin class in the specified PluginIndex.
get(Class<P>, Class<PT>, PluginIndex) - Static method in class org.scijava.plugin.PluginInfo
Finds a PluginInfo of the given plugin class and plugin type in the specified PluginIndex.
get(Class<P>, Collection<? extends PluginInfo<PT>>) - Static method in class org.scijava.plugin.PluginInfo
Finds a PluginInfo of the given plugin class in the specified list of plugins.
get() - Method in interface org.scijava.plugin.WrapperPlugin
Gets the data object currently associated with this plugin.
get(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
get(String) - Method in class org.scijava.plugins.scripting.scala.ScalaScriptEngine
 
get(Class<?>, String, String) - Method in class org.scijava.prefs.DefaultPrefService
 
get(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a String.
get(Class<?>, String, String) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a String.
get(String) - Method in interface org.scijava.prefs.PrefService
get(String, String) - Method in interface org.scijava.prefs.PrefService
get(String) - Method in class org.scijava.script.AbstractScriptEngine
 
get(String) - Method in class org.scijava.script.AdaptedScriptEngine
 
get(String) - Method in interface org.scijava.table.Table
Returns the first column with the given header in the table.
get(int, int) - Method in interface org.scijava.table.Table
Gets the table value at the given column and row.
get(String, int) - Method in interface org.scijava.table.Table
Gets the table value at the given column and row.
get(int) - Method in interface org.scijava.table.Table
Returns the column at the specified position in the table.
get(String) - Method in class org.scijava.ui.behaviour.BehaviourMap
Returns the binding for key, messaging the parent BehaviourMap if the binding is not locally defined.
get(InputTrigger) - Method in class org.scijava.ui.behaviour.InputTriggerMap
Get the set of all bindings for inputTrigger defined in this map and its parents.
get() - Method in class org.scijava.ui.behaviour.io.gui.CommandDescriptionBuilder
Returns the map of Command to description of what the command does.
get(Object) - Method in class org.scijava.ui.behaviour.util.WrappedActionMap
 
get(String) - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
get(KeyStroke) - Method in class org.scijava.ui.behaviour.util.WrappedInputMap
 
get(InputTrigger) - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
get(int) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
get(int) - Method in class org.scijava.util.BoolArray
 
get(int) - Method in class org.scijava.util.ByteArray
 
get(int) - Method in class org.scijava.util.CharArray
 
get(int) - Method in class org.scijava.util.DoubleArray
 
get(int) - Method in class org.scijava.util.FloatArray
 
get(int) - Method in class org.scijava.util.IntArray
 
get(int) - Method in class org.scijava.util.LastRecentlyUsed
Returns the entry for the given index.
get(int) - Method in class org.scijava.util.LongArray
 
get(String) - Method in class org.scijava.util.Manifest
 
get(int) - Method in class org.scijava.util.ObjectArray
 
get(String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(String, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(Class<?>, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(Class<?>, String, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(int) - Method in class org.scijava.util.ShortArray
 
get() - Method in class org.scijava.widget.AbstractInputWidget
 
get() - Method in interface org.scijava.widget.InputWidget
Gets the model object backing this widget.
getAbbreviatedByteLabel(double) - Static method in class org.scijava.util.UnitUtils
 
getAccelerator() - Method in class org.scijava.display.event.input.KyEvent
Converts the key event into a corresponding accelerator.
getAccelerator() - Method in class org.scijava.MenuEntry
 
getAction() - Method in class org.scijava.ui.behaviour.io.InputTriggerDescription
 
getActionMap() - Method in class org.scijava.ui.behaviour.util.Actions
 
getActiveDisplay() - Method in class org.scijava.display.DefaultDisplayService
 
getActiveDisplay(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getActiveDisplay() - Method in interface org.scijava.display.DisplayService
Gets the currently active display (of any Display type).
getActiveDisplay(Class<D>) - Method in interface org.scijava.display.DisplayService
Gets the most recently active display (of the specified Display type).
getActiveTool() - Method in class org.scijava.tool.DefaultToolService
 
getActiveTool() - Method in interface org.scijava.tool.ToolService
 
getAliases() - Method in class org.scijava.script.DefaultScriptService
 
getAliases() - Method in interface org.scijava.script.ScriptService
TODO
getAll() - Method in class org.scijava.object.ObjectIndex
Gets a list of all registered objects.
getAll() - Method in class org.scijava.util.Manifest
 
getAllBindings() - Method in class org.scijava.ui.behaviour.BehaviourMap
Get all bindings defined in this map and its parents.
getAllBindings() - Method in class org.scijava.ui.behaviour.InputTriggerMap
Get all bindings defined in this map and its parents.
getAllBindings() - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
getAllBindings() - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
getAllPOMs() - Static method in class org.scijava.util.POM
Gets all available Maven POMs on the class path.
getAllUsedIdentifiers() - Method in class org.scijava.ui.swing.script.TokenFunctions
 
getAllVersions(File, String) - Static method in class org.scijava.util.FileUtils
Lists all versions of a given (possibly versioned) file name.
getAlpha(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getAlpha() - Method in class org.scijava.util.ColorRGB
 
getAlpha() - Method in class org.scijava.util.ColorRGBA
 
getAlwaysActiveTools() - Method in class org.scijava.tool.DefaultToolService
 
getAlwaysActiveTools() - Method in interface org.scijava.tool.ToolService
 
getAnnotatedFields(Class<?>, Class<A>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Fields marked with the annotation of the specified class.
getAnnotatedFields(Class<?>, Class<A>, List<Field>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Fields marked with the annotation of the specified class.
getAnnotatedMethods(Class<?>, Class<A>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Methods marked with the annotation of the specified class.
getAnnotatedMethods(Class<?>, Class<A>, List<Method>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Methods marked with the annotation of the specified class.
getAnnotation() - Method in class org.scijava.plugin.PluginInfo
Gets the associated @Plugin annotation.
getAnnotationFiles() - Method in class org.scijava.annotations.AnnotationCombiner
Scans for annotations files in every resource on the classpath.
getAnnotationFiles() - Method in class org.scijava.util.CombineAnnotations
Deprecated.
getApp() - Method in class org.scijava.AbstractGateway
 
getApp() - Method in interface org.scijava.app.AppService
Gets the foremost application (the one with the highest priority).
getApp(String) - Method in interface org.scijava.app.AppService
Gets an application by name.
getApp(String) - Method in class org.scijava.app.DefaultAppService
 
getApp() - Method in interface org.scijava.Gateway
 
getAppEventService() - Method in class org.scijava.platform.DefaultPlatformService
 
getAppEventService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
Use AppService and App instead.
getApplicationFrame() - Method in class org.scijava.ui.awt.AWTUI
 
getApplicationFrame() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getApplicationFrame() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava application frame, or null if not applicable.
getApps() - Method in interface org.scijava.app.AppService
Gets the table of associated applications, keyed by name.
getApps() - Method in class org.scijava.app.DefaultAppService
 
getArchitecture() - Static method in class org.scijava.nativelib.NativeLibraryUtil
Determines the underlying hardware platform and architecture.
getArchiverVersion() - Method in class org.scijava.util.Manifest
 
getARGB(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getARGB() - Method in class org.scijava.util.ColorRGB
Gets the color as a packed integer, 8 bits per color component.
getArity() - Method in class org.scijava.parsington.Group
 
getArity() - Method in class org.scijava.parsington.Operator
1 for unary, 2 for binary, etc.
getArrangement() - Method in interface org.scijava.ui.Arrangeable
 
getArrangement() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
 
getArray() - Method in class org.scijava.util.BoolArray
 
getArray() - Method in class org.scijava.util.ByteArray
 
getArray() - Method in class org.scijava.util.CharArray
 
getArray() - Method in class org.scijava.util.DoubleArray
 
getArray() - Method in class org.scijava.util.FloatArray
 
getArray() - Method in class org.scijava.util.IntArray
 
getArray() - Method in class org.scijava.util.LongArray
 
getArray() - Method in class org.scijava.util.ObjectArray
 
getArray() - Method in interface org.scijava.util.PrimitiveArray
Gets the fixed-size array backing this instance.
getArray() - Method in class org.scijava.util.ShortArray
 
getArrayClass(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
Use Types.array(Class) instead.
getArtifactId() - Method in interface org.scijava.app.App
The Maven artifactId of the application.
getArtifactId() - Method in class org.scijava.app.SciJavaApp
 
getArtifactId() - Method in class org.scijava.minimaven.Coordinate
 
getArtifactId() - Method in class org.scijava.minimaven.MavenProject
 
getArtifactId() - Method in class org.scijava.util.POM
Gets the POM's artifactId.
getAssociativity() - Method in class org.scijava.parsington.Operator
 
getAttribute(String) - Method in class org.scijava.script.AbstractScriptContext
 
getAttribute(String, int) - Method in class org.scijava.script.AbstractScriptContext
 
getAttributesScope(String) - Method in class org.scijava.script.AbstractScriptContext
 
getAutoCompleter() - Method in interface org.scijava.script.ScriptLanguage
Gets a helper object capable of generating autocomplete suggestions for a code fragment.
getAvailableUIs() - Method in class org.scijava.ui.DefaultUIService
 
getAvailableUIs() - Method in interface org.scijava.ui.UIService
Gets the user interfaces available to the service.
getBase() - Method in class org.scijava.ui.dnd.MIMEType
Gets the MIME type with no parameter list.
getBaseClass() - Method in class org.scijava.object.ObjectIndex
Gets the base class of the items being managed.
getBaseDirectory() - Method in interface org.scijava.app.App
Gets the application's root directory.
getBaseDirectory() - Method in class org.scijava.download.DiskLocationCache
 
getBaseDirectory(String, Class<?>, String) - Static method in class org.scijava.util.AppUtils
Gets the application root directory.
getBaseDirectory(Class<?>) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory containing the given class file.
getBaseDirectory(Class<?>, String) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory containing the given class file.
getBaseDirectory(File, String) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory from the given known class location.
getBehaviourMap() - Method in class org.scijava.ui.behaviour.util.Behaviours
 
getBehaviourNames() - Method in class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder
 
getBindings(int) - Method in class org.scijava.script.AbstractScriptContext
 
getBindings(int) - Method in class org.scijava.script.AbstractScriptEngine
 
getBindings(int) - Method in class org.scijava.script.AdaptedScriptEngine
 
getBindings() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getBindings() - Method in interface org.scijava.script.ScriptInterpreter
Returns the Bindings of the associated ScriptEngine at ScriptContext.ENGINE_SCOPE scope.
getBindings() - Method in class org.scijava.ui.behaviour.InputTriggerMap
Get all bindings defined in this map.
getBlue(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getBlue() - Method in class org.scijava.util.ColorRGB
 
getBookmarks(TextEditorTab, Collection<Bookmark>) - Method in class org.scijava.ui.swing.script.EditorPane
Add this editors bookmarks to the specified collection.
getBoolean(Class<?>, String, boolean) - Method in class org.scijava.prefs.DefaultPrefService
 
getBoolean(Class<?>, String, boolean) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a boolean.
getBoolean(String, boolean) - Method in interface org.scijava.prefs.PrefService
getBoolean(String, boolean) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getBoolean(Class<?>, String, boolean) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getBottomRight() - Method in class org.scijava.util.IntRect
Gets the bottom right coordinate of the rectangle.
getBottomRight() - Method in class org.scijava.util.RealRect
Gets the bottom right coordinate of the rectangle.
getBuildFromSource() - Method in class org.scijava.minimaven.MavenProject
 
getBuildJdk() - Method in class org.scijava.util.Manifest
 
getBuildNumber(Class<?>) - Static method in class org.scijava.util.VersionUtils
Looks up the build number (typically an SCM revision) of the specified class.
getBuiltBy() - Method in class org.scijava.util.Manifest
 
getButton() - Method in class org.scijava.display.event.input.MsButtonEvent
 
getByExtension(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
getByName(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
getByte(long) - Method in class org.scijava.io.ByteArrayByteBank
 
getByte(long) - Method in interface org.scijava.io.ByteBank
 
getByte(long) - Method in class org.scijava.io.nio.ByteBufferByteBank
 
getByteBank() - Method in class org.scijava.io.location.BytesLocation
Gets the backing ByteBank.
getBytes(long, byte[], int, int) - Method in class org.scijava.io.ByteArrayByteBank
 
getBytes(long, byte[]) - Method in interface org.scijava.io.ByteBank
 
getBytes(long, byte[], int, int) - Method in interface org.scijava.io.ByteBank
 
getBytes(long, byte[], int, int) - Method in class org.scijava.io.nio.ByteBufferByteBank
 
getCallback() - Method in class org.scijava.command.CommandModuleItem
 
getCallback() - Method in class org.scijava.module.AbstractModuleItem
 
getCallback() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getCallback() - Method in interface org.scijava.module.ModuleItem
Gets the function that is called whenever this item changes.
getCallingClass() - Static method in class org.scijava.log.CallingClassUtils
Deprecated.
Use CallingClassUtils.getCallingClassName() instead. Warning: This method throws a IllegalStateException as soon as it comes across a class that can't be loaded with the default class loader. Inspects the stack trace to return the class that calls this method, but ignores every class annotated with @IgnoreAsCallingClass.
getCallingClass(Class<?>) - Static method in class org.scijava.test.TestUtils
Returns the class of the caller (excluding the specified class).
getCallingClassName() - Static method in class org.scijava.log.CallingClassUtils
Inspects the stack trace to return the name of the class that calls this method, but ignores every class annotated with @IgnoreAsCallingClass.
getCallingCodeLocation(Class<?>) - Static method in class org.scijava.test.TestUtils
Returns the class and the method/line number of the caller (excluding the specified class).
getCallingThread() - Method in class org.scijava.event.SciJavaEvent
Gets the thread that published the event.
getCancelReason() - Method in interface org.scijava.Cancelable
Gets a message describing why the operation was canceled.
getCancelReason() - Method in class org.scijava.command.CommandModule
 
getCancelReason() - Method in class org.scijava.command.ContextCommand
 
getCancelReason() - Method in class org.scijava.command.DynamicCommand
 
getCancelReason() - Method in class org.scijava.command.ModuleCommand
 
getCancelReason() - Method in class org.scijava.module.process.AbstractPreprocessorPlugin
 
getCancelReason() - Method in class org.scijava.task.DefaultTask
 
getCancelReason() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
 
getCellEditorValue() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
getCharacter() - Method in class org.scijava.display.event.input.KyEvent
 
getChildAt(int) - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
getChildCount() - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
getChildren() - Method in class org.scijava.menu.ShadowMenu
Gets this node's children, sorted by weight.
getChildren() - Method in class org.scijava.minimaven.MavenProject
 
getChoices() - Method in class org.scijava.command.CommandModuleItem
 
getChoices() - Method in class org.scijava.module.AbstractModuleItem
 
getChoices() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getChoices() - Method in interface org.scijava.module.ModuleItem
Gets the list of possible values.
getChoices() - Method in class org.scijava.widget.DefaultWidgetModel
 
getChoices() - Method in interface org.scijava.widget.WidgetModel
Gets the multiple choice list for the module input.
getCIManagementSystem() - Method in class org.scijava.util.POM
Gets the CI management system.
getCIManagementURL() - Method in class org.scijava.util.POM
Gets the CI management URL.
getClass(Type) - Static method in class org.scijava.util.ConversionUtils
getClass(Type) - Static method in class org.scijava.util.GenericUtils
Deprecated.
getClasses(Type) - Static method in class org.scijava.util.GenericUtils
Deprecated.
getClassLoader() - Static method in class org.scijava.Context
Gets the class loader to use.
getClassName() - Method in class org.scijava.command.CommandInfo
 
getClassName() - Method in interface org.scijava.Instantiable
Gets the fully qualified name of the Class of the objects that can be created.
getClassName() - Method in class org.scijava.plugin.PluginInfo
 
getClassName() - Method in interface org.scijava.ui.swing.script.autocompletion.ImportCompletion
 
getClassName() - Method in class org.scijava.ui.swing.script.autocompletion.ImportCompletionImpl
 
getClassName() - Method in class org.scijava.ui.swing.script.TokenFunctions
 
getClassPath(boolean) - Method in class org.scijava.minimaven.MavenProject
 
getClosestPresetColor(ColorRGB) - Static method in class org.scijava.util.Colors
Returns the preset color closest to a given color.
getCode() - Method in class org.scijava.display.event.input.KyEvent
 
getCode() - Method in enum org.scijava.input.KeyCode
Gets the key's numeric code.
getColor(ColorRGB) - Static method in class org.scijava.ui.awt.AWTColors
Gets the AWT Color corresponding to the given ImageJ ColorRGB.
getColor(ColorRGB, int) - Static method in class org.scijava.ui.awt.AWTColors
Get the AWT Color corresponding to the given ImageJ ColorRGB plus explicit alpha component (0-255).
getColor(String) - Static method in class org.scijava.util.Colors
Gets the preset color with the given name.
getColorRGB(Color) - Static method in class org.scijava.ui.awt.AWTColors
Gets the ImageJ ColorRGB corresponding to the given AWT Color.
getColorRGBA(Color) - Static method in class org.scijava.ui.awt.AWTColors
Get the ImageJ ColorRGBA corresponding to the given AWT Color, including alpha component.
getColumnCount() - Method in class org.scijava.command.CommandModuleItem
 
getColumnCount() - Method in class org.scijava.module.AbstractModuleItem
 
getColumnCount() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getColumnCount() - Method in interface org.scijava.module.ModuleItem
Gets the preferred width of the input field in characters (if applicable).
getColumnCount() - Method in interface org.scijava.table.Table
Gets the number of columns in the table.
getColumnCount() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getColumnCount() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.NullTableModel
 
getColumnCount() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.TableModel
 
getColumnHeader(int) - Method in interface org.scijava.table.Table
Gets the column header at the given column.
getColumnIndex(String) - Method in interface org.scijava.table.Table
Gets the column index of the column with the given header.
getColumnName(int) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getColumnName(int) - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.TableModel
 
getCommand() - Method in class org.scijava.command.CommandModule
Gets the command instance handled by this module.
getCommand(Class<C>) - Method in interface org.scijava.command.CommandService
Gets the first available command of the given class, or null if none.
getCommand(String) - Method in interface org.scijava.command.CommandService
Gets the first available command of the given class name, or null if none.
getCommand(Class<C>) - Method in class org.scijava.command.DefaultCommandService
 
getCommand(String) - Method in class org.scijava.command.DefaultCommandService
 
getCommand() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
Gets the currently selected command.
getCommands() - Method in interface org.scijava.command.CommandService
Gets the list of all available Commands).
getCommands(List<PluginInfo<CT>>) - Method in interface org.scijava.command.CommandService
Gets the list of Commands corresponding to the given plugins.
getCommands() - Method in class org.scijava.command.DefaultCommandService
 
getCommands(List<PluginInfo<CT>>) - Method in class org.scijava.command.DefaultCommandService
 
getCommands() - Method in interface org.scijava.platform.AppEventService
Deprecated.
Tag relevant commands instead: attrs = { @Attr(name = "app-command") }
getCommands() - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
 
getCommandService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
getCommandsOfClass(Class<C>) - Method in interface org.scijava.command.CommandService
Gets the list of commands of the given class.
getCommandsOfClass(String) - Method in interface org.scijava.command.CommandService
Gets the list of commands with the given class name.
getCommandsOfClass(Class<C>) - Method in class org.scijava.command.DefaultCommandService
 
getCommandsOfClass(String) - Method in class org.scijava.command.DefaultCommandService
 
getCommandsOfType(Class<CT>) - Method in interface org.scijava.command.CommandService
Gets the list of Commands of the given type.
getCommandsOfType(Class<CT>) - Method in class org.scijava.command.DefaultCommandService
 
getCompatibleInputClasses(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleInputClasses(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getCompatibleInputs(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleInputs(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getCompatibleOutputClasses(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleOutputClasses(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getCompletions(String) - Method in class org.scijava.ui.swing.script.autocompletion.JythonAutocompletionProvider
Completions to discover (autocomplete imports) and auto-import java classes.
getCompletionsImpl(JTextComponent) - Method in class org.scijava.ui.swing.script.autocompletion.JythonAutocompletionProvider
 
getComponent() - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
getComponent() - Method in class org.scijava.ui.awt.widget.AWTInputWidget
 
getComponent() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
getComponent() - Method in class org.scijava.ui.swing.script.InterpreterPane
 
getComponent() - Method in class org.scijava.ui.swing.script.PromptPane
 
getComponent() - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
getComponent() - Method in class org.scijava.ui.swing.widget.SwingInputWidget
 
getComponent() - Method in interface org.scijava.widget.UIComponent
Gets the user interface component housing this object.
getComponentClass(Type) - Static method in class org.scijava.util.ConversionUtils
getComponentClass(Type) - Static method in class org.scijava.util.GenericUtils
getComponentType() - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
getComponentType() - Method in class org.scijava.ui.awt.widget.AWTInputWidget
 
getComponentType() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
getComponentType() - Method in class org.scijava.ui.swing.script.InterpreterPane
 
getComponentType() - Method in class org.scijava.ui.swing.script.PromptPane
 
getComponentType() - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
getComponentType() - Method in class org.scijava.ui.swing.widget.SwingInputWidget
 
getComponentType(Type) - Static method in class org.scijava.util.GenericUtils
Deprecated.
getComponentType() - Method in interface org.scijava.widget.UIComponent
Gets the type of the UI component housing the object.
getConcatenatedActionMap() - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Get the chained ActionMap.
getConcatenatedBehaviourMap() - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings
Get the chained BehaviourMap.
getConcatenatedInputMap() - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Get the chained InputMap.
getConcatenatedInputTriggerMap() - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings
Get the chained InputTriggerMap.
getConsolePane() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getConsolePane() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava console pane, or null if not applicable.
getContext() - Method in class org.scijava.AbstractContextual
 
getContext() - Method in class org.scijava.command.CommandModule
 
getContext() - Method in class org.scijava.command.DynamicCommand
 
getContext() - Method in class org.scijava.command.ModuleCommand
 
getContext() - Method in interface org.scijava.Contextual
Gets the application context to which the object belongs, or null if Contextual.setContext(Context) has not yet been called on this object.
getContext() - Method in class org.scijava.script.AbstractScriptEngine
 
getContext() - Method in class org.scijava.script.AdaptedScriptEngine
 
getContext() - Method in class org.scijava.script.ScriptInfo
 
getContext() - Method in class org.scijava.script.ScriptModule
 
getContext() - Method in class org.scijava.service.AbstractService
 
getContext() - Method in class org.scijava.ui.behaviour.io.gui.Command
 
getContexts() - Method in class org.scijava.ui.behaviour.io.InputTriggerDescription
 
getContexts() - Method in class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder
 
getCoordinate() - Method in class org.scijava.minimaven.MavenProject
 
getCreatedBy() - Method in class org.scijava.util.Manifest
 
getCurrentLanguage() - Method in class org.scijava.ui.swing.script.EditorPane
Get ScriptLanguage used for this EditorPane.
getCurrentLanguage() - Method in class org.scijava.ui.swing.script.TextEditor
 
getCursor() - Method in interface org.scijava.tool.Tool
The tool's mouse pointer.
getCursor(MouseCursor) - Static method in class org.scijava.ui.awt.AWTCursors
Gets the AWT Cursor corresponding to the given ImageJ MouseCursor.
getCursorCode(MouseCursor) - Static method in class org.scijava.ui.awt.AWTCursors
Gets the AWT cursor code corresponding to the given ImageJ MouseCursor.
getData() - Method in class org.scijava.io.event.IOEvent
Gets the data for which I/O took place.
getData() - Method in class org.scijava.plugins.commands.io.OpenFile
 
getData() - Method in class org.scijava.ui.ARGBPlane
 
getData(MIMEType) - Method in class org.scijava.ui.awt.AWTDragAndDropData
 
getData(MIMEType) - Method in class org.scijava.ui.dnd.DefaultDragAndDropData
 
getData(MIMEType) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the data with respect to the given MIME type.
getData(Class<T>) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the data as an object of the given Java class.
getData() - Method in class org.scijava.ui.dnd.event.DragAndDropEvent
Gets the drag-and-drop data.
getDataHandle() - Method in class org.scijava.io.handle.DataHandleInputStream
 
getDataType() - Method in interface org.scijava.io.IOPlugin
The type of data opened and/or saved by the plugin.
getDataType() - Method in class org.scijava.script.io.ScriptIOPlugin
 
getDataType() - Method in interface org.scijava.table.io.TableIOPlugin
 
getDataType() - Method in class org.scijava.text.io.TextIOPlugin
 
getDefaultImports() - Method in interface org.scijava.ui.swing.script.AutoImporter
 
getDefaultUI() - Method in class org.scijava.ui.DefaultUIService
 
getDefaultUI() - Method in interface org.scijava.ui.UIService
Gets the default user interface.
getDefaultValue() - Method in class org.scijava.command.CommandModuleItem
 
getDefaultValue() - Method in class org.scijava.module.AbstractModuleItem
 
getDefaultValue(ModuleItem<T>) - Method in class org.scijava.module.DefaultModuleService
 
getDefaultValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getDefaultValue() - Method in interface org.scijava.module.ModuleItem
Gets the default value.
getDefaultValue(ModuleItem<T>) - Method in interface org.scijava.module.ModuleService
Gets the default value of the given ModuleItem.
getDefaultValue(Number, Number, Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getDelegateClass() - Method in class org.scijava.module.AbstractModuleItem
 
getDelegateClassName() - Method in class org.scijava.command.CommandInfo
 
getDelegateClassName() - Method in interface org.scijava.module.ModuleInfo
Gets the fully qualified name of the class containing the module's actual implementation.
getDelegateClassName() - Method in interface org.scijava.module.MutableModuleInfo
 
getDelegateClassName() - Method in class org.scijava.script.ScriptInfo
 
getDelegateObject() - Method in class org.scijava.command.CommandModule
 
getDelegateObject() - Method in class org.scijava.module.AbstractModule
 
getDelegateObject() - Method in interface org.scijava.module.Module
Gets the object containing the module's actual implementation.
getDelegateType() - Method in class org.scijava.convert.AbstractDelegateConverter
 
getDependencies() - Method in class org.scijava.minimaven.MavenProject
 
getDependencies(boolean, boolean, String...) - Method in class org.scijava.minimaven.MavenProject
 
getDependencies(Set<MavenProject>, boolean, boolean, Set<String>, String...) - Method in class org.scijava.minimaven.MavenProject
 
getDescription() - Method in class org.scijava.AbstractBasicDetails
 
getDescription() - Method in interface org.scijava.BasicDetails
Gets a string describing the object.
getDescription() - Method in class org.scijava.command.CommandModuleItem
 
getDescription() - Method in class org.scijava.command.DynamicCommandInfo
 
getDescription() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getDescription() - Method in interface org.scijava.tool.Tool
Returns the text the tool provides when mouse hovers over tool
getDescriptions() - Method in class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder
 
getDescriptor() - Method in class org.scijava.io.event.IOEvent
Deprecated.
getDesktop() - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
getDesktop() - Method in interface org.scijava.ui.UserInterface
Gets the desktop, for use with multi-document interfaces (MDI), or null if not applicable.
getDestination() - Method in class org.scijava.io.event.DataSavedEvent
Deprecated.
getDirectDependencies() - Method in class org.scijava.minimaven.MavenProject
 
getDirectory() - Method in class org.scijava.minimaven.MavenProject
 
getDisableChecksums() - Method in class org.scijava.grab.DefaultGrabService
 
getDisableChecksums() - Method in interface org.scijava.grab.GrabService
Global flag to ignore checksums.
getDisplay(String) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplay(String) - Method in interface org.scijava.display.DisplayService
Gets a display by its name.
getDisplay() - Method in class org.scijava.display.event.DisplayEvent
 
getDisplay() - Method in class org.scijava.input.DefaultInputService
 
getDisplay() - Method in interface org.scijava.input.InputService
Gets the display associated with the last observed mouse cursor.
getDisplay() - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer.SwingDisplayPanel
 
getDisplay() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel
 
getDisplay() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
getDisplay() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
getDisplay() - Method in interface org.scijava.ui.viewer.DisplayPanel
Gets the panel's associated display.
getDisplay() - Method in interface org.scijava.ui.viewer.DisplayViewer
Gets the display being viewed.
getDisplay() - Method in class org.scijava.ui.viewer.table.AbstractTableDisplayViewer
 
getDisplay() - Method in interface org.scijava.ui.viewer.table.TableDisplayPanel
 
getDisplay() - Method in interface org.scijava.ui.viewer.table.TableDisplayViewer
 
getDisplay() - Method in class org.scijava.ui.viewer.text.AbstractTextDisplayViewer
 
getDisplay() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
getDisplay() - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer
 
getDisplayPlugin(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugin(String) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugin(Class<D>) - Method in interface org.scijava.display.DisplayService
Gets the display plugin of the given class, or null if none.
getDisplayPlugin(String) - Method in interface org.scijava.display.DisplayService
Gets the display plugin of the given class name, or null if none.
getDisplayPlugins() - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugins() - Method in interface org.scijava.display.DisplayService
Gets the list of known display plugins.
getDisplayPluginsOfType(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPluginsOfType(Class<DT>) - Method in interface org.scijava.display.DisplayService
Gets the list of display plugins of the given type (e.g., ImageDisplay.class).
getDisplays() - Method in class org.scijava.display.DefaultDisplayService
 
getDisplays(Object) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplays() - Method in interface org.scijava.display.DisplayService
Gets a list of all available displays.
getDisplays(Object) - Method in interface org.scijava.display.DisplayService
Gets a list of displays currently visualizing the given object.
getDisplaysOfType(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplaysOfType(Class<DT>) - Method in interface org.scijava.display.DisplayService
Gets a list of all available displays of the given type (e.g., ImageDisplay.class).
getDisplayViewer(Display<?>) - Method in class org.scijava.ui.DefaultUIService
 
getDisplayViewer(Display<?>) - Method in interface org.scijava.ui.UIService
Gets the UI widget being used to visualize the given Display.
getDocument() - Method in class org.scijava.util.XML
Gets the XML's DOM representation.
getDouble(Class<?>, String, double) - Method in class org.scijava.prefs.DefaultPrefService
 
getDouble(Class<?>, String, double) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a double.
getDouble(String, double) - Method in interface org.scijava.prefs.PrefService
getDouble(String, double) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getDouble(Class<?>, String, double) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getDownloadAutomatically() - Method in class org.scijava.minimaven.BuildEnvironment
 
getEditorPane() - Method in class org.scijava.ui.swing.script.TextEditor
Return the EditorPane of the currently selected TextEditorTab.
getEditorPane(int) - Method in class org.scijava.ui.swing.script.TextEditor
 
getEditorPane() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
getEnableAutoDownload() - Method in class org.scijava.grab.DefaultGrabService
 
getEnableAutoDownload() - Method in interface org.scijava.grab.GrabService
This is a static access auto download enabler.
getEncoding() - Method in class org.scijava.io.handle.AbstractDataHandle
 
getEncoding() - Method in interface org.scijava.io.handle.DataHandle
Gets the native encoding of the stream.
getEngine() - Method in class org.scijava.plugins.scripting.groovy.GroovyCompiledScript
 
getEngine() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getEngine() - Method in interface org.scijava.script.ScriptInterpreter
Returns the associated ScriptEngine.
getEngine() - Method in class org.scijava.script.ScriptModule
Gets the script engine used to execute the script.
getEngineName() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
getEngineName() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getEngineName() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getEngineName() - Method in class org.scijava.script.AbstractScriptLanguage
 
getEngineName() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getEngineVersion() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getEngineVersion() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getEngineVersion() - Method in interface org.scijava.script.ScriptLanguage
 
getEnvironmentVariables() - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getErr() - Method in class org.scijava.minimaven.BuildEnvironment
 
getErrorCount() - Method in class org.scijava.ui.swing.script.ErrorHandler
 
getErrorHandler() - Method in class org.scijava.ui.swing.script.TextEditor
 
getErrorScreen() - Method in class org.scijava.ui.swing.script.TextEditor
 
getErrorWriter() - Method in class org.scijava.script.AbstractScriptContext
 
getEventClass() - Method in interface org.scijava.event.EventSubscriber
 
getEventService() - Method in interface org.scijava.command.CommandService
Deprecated.
getEventService() - Method in interface org.scijava.display.DisplayService
Deprecated.
getEventService() - Method in interface org.scijava.input.InputService
Deprecated.
getEventService() - Method in interface org.scijava.object.ObjectService
Deprecated.
getEventService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
getEventString() - Method in class org.scijava.event.EventDetails
 
getEventType() - Method in class org.scijava.event.EventDetails
 
getExceptions() - Method in class org.scijava.plugin.PluginIndex
Gets the exceptions which occurred during the last invocation of PluginIndex.discover().
getExecuter() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
getExecutingTasks() - Method in class org.scijava.ui.swing.script.TextEditor
Returns a list of currently executing tasks
getExecutorService() - Method in class org.scijava.thread.DefaultThreadService
 
getExecutorService() - Method in interface org.scijava.thread.ThreadService
getExtension(File) - Static method in class org.scijava.util.FileUtils
Extracts the file extension from a file.
getExtension(String) - Static method in class org.scijava.util.FileUtils
Extracts the file extension from a file path.
getExtensions() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.kotlin.KotlinScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.text.markdown.MarkdownTextFormat
 
getExtensions() - Method in class org.scijava.plugins.text.plain.PlainTextFormat
 
getExtensions() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getExtensions() - Method in interface org.scijava.script.ScriptLanguage
 
getExtensions() - Method in interface org.scijava.text.TextFormat
Gets the list of filename extensions for text in this format.
getFactory() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getFactory() - Method in class org.scijava.script.AbstractScriptEngine
 
getFactory() - Method in class org.scijava.script.AdaptedScriptEngine
 
getField() - Method in class org.scijava.command.CommandModuleItem
 
getField(String, String) - Static method in class org.scijava.util.ClassUtils
getField(Class<?>, String) - Static method in class org.scijava.util.ClassUtils
getFieldClasses(Field, Class<?>) - Static method in class org.scijava.util.GenericUtils
getFieldName(Class<?>, int) - Static method in class org.scijava.util.DebugUtils
This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.
getFieldType(Field, Class<?>) - Static method in class org.scijava.util.GenericUtils
Deprecated.
getFile() - Method in class org.scijava.io.location.FileLocation
Gets the associated File.
getFile() - Method in class org.scijava.ui.swing.script.EditorPane
Get file currently open in this EditorPane.
getFile() - Method in class org.scijava.ui.swing.script.TextEditor
 
getFileExtensions(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex
 
getFileForBasename(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
getFileName(boolean, String) - Method in class org.scijava.minimaven.Coordinate
 
getFileName(boolean, boolean, String) - Method in class org.scijava.minimaven.Coordinate
 
getFileName() - Method in class org.scijava.ui.swing.script.EditorPane
 
getFiles() - Method in class org.scijava.platform.event.AppOpenFilesEvent
 
getFiles(TransferHandler.TransferSupport) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget
Gets the list of files associated with the given drag and drop operation.
getFloat(Class<?>, String, float) - Method in class org.scijava.prefs.DefaultPrefService
 
getFloat(Class<?>, String, float) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a float.
getFloat(String, float) - Method in interface org.scijava.prefs.PrefService
getFloat(String, float) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getFloat(Class<?>, String, float) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getFocus() - Method in class org.scijava.ui.swing.SwingDialog
Gets the Component that will have the initial keyboard focus.
getFontSize() - Method in class org.scijava.ui.swing.script.EditorPane
 
getFromClipboard() - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
getFromString(String) - Static method in class org.scijava.ui.behaviour.InputTrigger
 
getGAV() - Method in class org.scijava.minimaven.Coordinate
 
getGAV() - Method in class org.scijava.minimaven.MavenProject
 
getGenericType() - Method in class org.scijava.command.CommandModuleItem
 
getGenericType() - Method in class org.scijava.module.AbstractModuleItem
 
getGenericType() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getGenericType() - Method in interface org.scijava.module.ModuleItem
Gets the type of the item, including Java generic parameters.
getGenericType(Field, Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
getGitDirectory() - Method in class org.scijava.ui.swing.script.EditorPane
Get the directory of the git repository for the currently open file.
getGitDirectory(File) - Method in class org.scijava.ui.swing.script.FileFunctions
 
getGitwebURL(File, File, int) - Method in class org.scijava.ui.swing.script.FileFunctions
 
getGreen(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getGreen() - Method in class org.scijava.util.ColorRGB
 
getGroupId() - Method in interface org.scijava.app.App
The Maven groupId of the application.
getGroupId() - Method in class org.scijava.app.SciJavaApp
 
getGroupId() - Method in class org.scijava.minimaven.Coordinate
 
getGroupId() - Method in class org.scijava.minimaven.MavenProject
 
getGroupId() - Method in class org.scijava.util.POM
Gets the POM's groupId.
getHandler(Object, Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Object, Type) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Class<?>, Type) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Object, Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getHandler(Object, Type) - Method in interface org.scijava.convert.ConvertService
 
getHandler(Class<?>, Class<?>) - Method in interface org.scijava.convert.ConvertService
getHandler(Class<?>, Type) - Method in interface org.scijava.convert.ConvertService
getHandler(DT) - Method in interface org.scijava.plugin.HandlerService
Gets the most appropriate handler for the given data object, or null if no handler supports it.
getHandler(File) - Method in interface org.scijava.text.TextService
Gets the text format which best handles the given file.
getHandler(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the drag-and-drop handler which will be used to handle the given DragAndDropData dragged onto the specified display.
getHandler(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the drag-and-drop handler which will be used to handle the given object dragged onto the specified display.
getHeader() - Method in class org.scijava.plugins.scripting.jruby.JRubyScriptHeader
 
getHeader() - Method in interface org.scijava.script.ScriptHeader
 
getHeader(ScriptLanguage) - Method in interface org.scijava.script.ScriptHeaderService
Searches for all ScriptHeaders capable of handling the given ScriptLanguage and combines the result of their ScriptHeader.getHeader() output to a single string.
getHeader() - Method in class org.scijava.table.BoolColumn
 
getHeader() - Method in class org.scijava.table.ByteColumn
 
getHeader() - Method in class org.scijava.table.CharColumn
 
getHeader() - Method in interface org.scijava.table.Column
Gets the header of this column.
getHeader() - Method in class org.scijava.table.DefaultColumn
 
getHeader() - Method in class org.scijava.table.DoubleColumn
 
getHeader() - Method in class org.scijava.table.FloatColumn
 
getHeader() - Method in class org.scijava.table.IntColumn
 
getHeader() - Method in class org.scijava.table.LongColumn
 
getHeader() - Method in class org.scijava.table.ShortColumn
 
getHeight() - Method in class org.scijava.ui.ARGBPlane
 
getHttpUrl() - Method in class org.scijava.io.http.HTTPLocation
gets the backing HttpUrl
getIcon() - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
getIconPath() - Method in class org.scijava.AbstractUIDetails
 
getIconPath() - Method in class org.scijava.command.DynamicCommandInfo
 
getIconPath() - Method in class org.scijava.MenuEntry
 
getIconPath() - Method in interface org.scijava.UIDetails
Gets the resource path to an icon representing the object.
getIconRectangleHeight() - Method in interface org.scijava.tool.IconDrawer
 
getIconRectangleWidth() - Method in interface org.scijava.tool.IconDrawer
 
getIconURL() - Method in class org.scijava.command.CommandInfo
 
getIconURL() - Method in class org.scijava.menu.ShadowMenu
Gets the URL of the icon associated with this node's MenuEntry.
getIconURL() - Method in class org.scijava.plugin.PluginInfo
Gets the URL corresponding to the icon resource path.
getIdentifier() - Method in class org.scijava.command.CommandInfo
 
getIdentifier() - Method in interface org.scijava.Identifiable
Gets a string intended to function as an identifier for the object.
getIdentifier() - Method in interface org.scijava.module.ModuleInfo
 
getIdentifier() - Method in class org.scijava.plugin.PluginInfo
 
getIdentifier() - Method in interface org.scijava.plugin.RichPlugin
 
getIdentifier() - Method in class org.scijava.script.ScriptInfo
 
getImplementationBuild(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
getImplementationBuild() - Method in class org.scijava.util.Manifest
 
getImplementationDate() - Method in class org.scijava.util.Manifest
 
getImplementationTitle() - Method in class org.scijava.util.Manifest
 
getImplementationVendor() - Method in class org.scijava.util.Manifest
 
getImplementationVendorId() - Method in class org.scijava.util.Manifest
 
getImplementationVersion() - Method in class org.scijava.util.Manifest
 
getImportGenerator(Context, ScriptLanguage) - Static method in class org.scijava.ui.swing.script.DefaultAutoImporters
 
getImports() - Method in class org.scijava.ui.swing.script.TokenFunctions
 
getImportStatement() - Method in interface org.scijava.ui.swing.script.autocompletion.ImportCompletion
 
getImportStatement() - Method in class org.scijava.ui.swing.script.autocompletion.ImportCompletionImpl
 
getIndex() - Method in class org.scijava.module.DefaultModuleService
 
getIndex() - Method in interface org.scijava.module.ModuleService
Gets the index of available modules.
getIndex() - Method in class org.scijava.object.DefaultObjectService
 
getIndex() - Method in interface org.scijava.object.ObjectService
Gets the index of available objects.
getIndex() - Method in class org.scijava.plugin.DefaultPluginService
 
getIndex() - Method in interface org.scijava.plugin.PluginService
Gets the index of available plugins.
getIndex() - Method in class org.scijava.script.DefaultScriptService
 
getIndex() - Method in interface org.scijava.script.ScriptService
Gets the index of available scripting languages.
getInfo(boolean) - Method in class org.scijava.AbstractGateway
 
getInfo(boolean) - Method in interface org.scijava.app.App
Gets a string with information about the application.
getInfo() - Method in class org.scijava.command.CommandModule
 
getInfo() - Method in class org.scijava.command.DynamicCommand
 
getInfo() - Method in class org.scijava.command.ModuleCommand
 
getInfo(boolean) - Method in interface org.scijava.Gateway
 
getInfo() - Method in class org.scijava.module.AbstractModuleItem
 
getInfo() - Method in class org.scijava.module.DefaultMutableModule
 
getInfo() - Method in interface org.scijava.module.Module
Gets metadata about this module.
getInfo() - Method in interface org.scijava.module.ModuleItem
Gets the ModuleInfo to which this item belongs.
getInfo() - Method in interface org.scijava.module.MutableModule
 
getInfo() - Method in class org.scijava.plugin.AbstractRichPlugin
 
getInfo() - Method in interface org.scijava.plugin.HasPluginInfo
Gets the PluginInfo metadata associated with the object.
getInfo() - Method in class org.scijava.script.ScriptModule
 
getInitializer() - Method in class org.scijava.command.CommandInfo
 
getInitializer() - Method in class org.scijava.command.CommandModuleItem
 
getInitializer() - Method in class org.scijava.command.DynamicCommandInfo
 
getInitializer() - Method in class org.scijava.module.AbstractModuleItem
 
getInitializer() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getInitializer() - Method in interface org.scijava.module.ModuleInfo
Gets the function that is called to initialize the module's values.
getInitializer() - Method in interface org.scijava.module.ModuleItem
Gets the function that is called to initialize the item's value.
getInput(String) - Method in class org.scijava.command.CommandInfo
 
getInput(String, Class<T>) - Method in class org.scijava.command.CommandInfo
 
getInput(String) - Method in class org.scijava.command.CommandModule
 
getInput(String) - Method in class org.scijava.command.DynamicCommand
 
getInput(String) - Method in class org.scijava.module.AbstractModule
 
getInput(String) - Method in class org.scijava.module.AbstractModuleInfo
 
getInput(String, Class<T>) - Method in class org.scijava.module.AbstractModuleInfo
 
getInput(String) - Method in interface org.scijava.module.Module
Gets the value of the input with the given name.
getInput(String) - Method in interface org.scijava.module.ModuleInfo
Gets the input item with the given name.
getInput(String, Class<T>) - Method in interface org.scijava.module.ModuleInfo
Gets the input item with the given name and type.
getInputField(String) - Method in class org.scijava.command.DynamicCommandInfo
Gets the Field corresponding to the given @Parameter annotated module input, or null if the input does not exist or was not declared using the @Parameter mechanism.
getInputFile() - Method in class org.scijava.plugins.commands.io.OpenFile
 
getInputMap() - Method in class org.scijava.ui.behaviour.util.Actions
 
getInputs() - Method in class org.scijava.module.AbstractModule
 
getInputs() - Method in interface org.scijava.module.Module
Gets a table of input values.
getInputs(String, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
getInputs(String, Set<String>) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
getInputTrigger() - Method in class org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor
 
getInputTriggerMap() - Method in class org.scijava.ui.behaviour.util.Behaviours
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayWrapper
 
getInputType() - Method in class org.scijava.convert.CastingConverter
 
getInputType() - Method in interface org.scijava.convert.Converter
 
getInputType() - Method in class org.scijava.convert.DefaultConverter
 
getInputType() - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter
 
getInputType() - Method in class org.scijava.convert.FileListConverters.FileToStringConverter
 
getInputType() - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter
 
getInputType() - Method in class org.scijava.convert.FileListConverters.StringToFileConverter
 
getInputType() - Method in class org.scijava.convert.NullConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToFloatConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToLongConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToShortConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.DoubleToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.FloatToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.FloatToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToLongConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.LongToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.LongToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToFloatConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToLongConverter
 
getInstance(Class<P>) - Method in class org.scijava.plugin.AbstractSingletonService
 
getInstance(Class<P>) - Method in interface org.scijava.plugin.SingletonService
Gets the singleton plugin instance of the given class.
getInstance() - Static method in class org.scijava.ui.behaviour.GlobalKeyEventDispatcher
 
getInstance(LogService) - Static method in class org.scijava.ui.swing.script.ExceptionHandler
 
getInstances() - Method in class org.scijava.options.DefaultOptionsService
 
getInstances() - Method in class org.scijava.plugin.AbstractSingletonService
 
getInstances() - Method in interface org.scijava.plugin.HandlerService
Gets the list of handlers.
getInstances() - Method in interface org.scijava.plugin.SingletonService
Gets the list of plugin instances.
getInstances() - Method in interface org.scijava.text.TextService
Gets the list of available text formats.
getInstances() - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the list of available drag-and-drop handlers, which are used to perform drag-and-drop operations.
getInt(Class<?>, String, int) - Method in class org.scijava.prefs.DefaultPrefService
 
getInt(Class<?>, String, int) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as an int.
getInt(String, int) - Method in interface org.scijava.prefs.PrefService
getInt(String, int) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getInt(Class<?>, String, int) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getInterface(Class<T>) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getInterface(Object, Class<T>) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getInterpretedLanguages() - Method in class org.scijava.script.ScriptREPL
Gets the list of languages compatible with the REPL.
getInterpreter() - Method in class org.scijava.script.ScriptREPL
Gets the script interpreter for the currently active language.
getInterpreter() - Method in class org.scijava.ui.swing.script.InterpreterWindow
Gets the associated REPL's active ScriptInterpreter.
getIntX() - Method in class org.scijava.util.RealCoords
 
getIntY() - Method in class org.scijava.util.RealCoords
 
getIOType() - Method in class org.scijava.command.CommandModuleItem
 
getIOType() - Method in class org.scijava.module.AbstractModuleItem
 
getIOType() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getIOType() - Method in interface org.scijava.module.ModuleItem
Gets the input/output type of the item.
getIssueManagementSystem() - Method in class org.scijava.util.POM
Gets the issue management system.
getIssueManagementURL() - Method in class org.scijava.util.POM
Gets the issue management URL.
getItem() - Method in class org.scijava.widget.DefaultWidgetModel
 
getItem() - Method in interface org.scijava.widget.WidgetModel
Gets the module input's associated item descriptor.
getItems() - Method in class org.scijava.object.event.ListEvent
Gets the list of affected items.
getIterable(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getIterable(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
getIterable(String) - Method in interface org.scijava.prefs.PrefService
getJarName() - Method in class org.scijava.minimaven.Coordinate
 
getJarName(boolean) - Method in class org.scijava.minimaven.Coordinate
 
getJarName() - Method in class org.scijava.minimaven.MavenProject
 
getJavaValue(SEXP) - Static method in class org.scijava.plugins.scripting.renjin.RenjinUtils
Extracts a value from the specified R variable.
getJniDir() - Method in class org.scijava.nativelib.BaseJniExtractor
this is where JNI libraries are extracted to (e.g.
getJniDir() - Method in class org.scijava.nativelib.DefaultJniExtractor
 
getJniDir() - Method in class org.scijava.nativelib.WebappJniExtractor
 
getJniExtractor() - Static method in class org.scijava.nativelib.NativeLoader
 
getKey() - Method in class org.scijava.minimaven.Coordinate
 
getKeyCode() - Method in class org.scijava.input.Accelerator
 
getKeyStroke() - Method in class org.scijava.ui.behaviour.InputTrigger
 
getLabel() - Method in class org.scijava.AbstractBasicDetails
 
getLabel() - Method in interface org.scijava.BasicDetails
Gets the name to appear in a UI, if applicable.
getLabel() - Method in class org.scijava.command.CommandModuleItem
 
getLabel() - Method in class org.scijava.command.DynamicCommandInfo
 
getLabel() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getLanguage() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getLanguage() - Method in class org.scijava.script.ScriptInfo
Gets the scripting language of the script.
getLanguage() - Method in interface org.scijava.script.ScriptInterpreter
Returns the associated ScriptLanguage.
getLanguage() - Method in class org.scijava.script.ScriptModule
Deprecated.
getLanguageByExtension(String) - Method in interface org.scijava.script.ScriptService
Gets the scripting language that handles the given file extension.
getLanguageByName(String) - Method in interface org.scijava.script.ScriptService
Gets the scripting language with the given name.
getLanguageName() - Method in class org.scijava.script.AbstractScriptLanguage
 
getLanguageName() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getLanguageName() - Method in class org.scijava.ui.swing.script.languagesupport.JavaLanguageSupportPlugin
 
getLanguageName() - Method in class org.scijava.ui.swing.script.languagesupport.JavaScriptLanguageSupportPlugin
 
getLanguageName() - Method in class org.scijava.ui.swing.script.languagesupport.JythonLanguageSupportPlugin
 
getLanguageName() - Method in interface org.scijava.ui.swing.script.LanguageSupportPlugin
 
getLanguages() - Method in interface org.scijava.script.ScriptService
Gets the available scripting languages.
getLanguageSupport(ScriptLanguage) - Method in class org.scijava.ui.swing.script.DefaultLanguageSupportService
 
getLanguageSupport(ScriptLanguage) - Method in interface org.scijava.ui.swing.script.LanguageSupportService
Get a LanguageSupport for the given language.
getLanguageVersion() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getLanguageVersion() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getLanguageVersion() - Method in interface org.scijava.script.ScriptLanguage
 
getLastValidInputTrigger() - Method in class org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor
 
getLastX() - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
Gets the last known mouse X coordinate.
getLastY() - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
Gets the last known mouse Y coordinate.
getLeaf() - Method in class org.scijava.MenuPath
Gets the final element of the menu path.
getLeafListeners() - Method in class org.scijava.ui.swing.script.FileSystemTree
 
getLevel() - Method in class org.scijava.display.event.DisplayUpdatedEvent
 
getLevel() - Method in class org.scijava.log.AbstractLogService
 
getLevel() - Method in class org.scijava.log.DefaultLogger
 
getLevel() - Method in interface org.scijava.log.Logger
Returns the log level of this logger.
getLibExtLocations() - Method in class org.scijava.java3d.DefaultJava3DService
 
getLibExtLocations() - Method in interface org.scijava.java3d.Java3DService
Gets the locations where Java 3D is installed as an extension.
getLine() - Method in class org.scijava.ui.swing.script.ErrorHandler
 
getLineCommentStartAndEnd(int) - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
 
getLineNumber() - Method in class org.scijava.ui.swing.script.Bookmark
 
getList(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getList(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getList(String, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getList(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a List.
getList(Class<?>) - Method in interface org.scijava.prefs.PrefService
getList(String) - Method in interface org.scijava.prefs.PrefService
getList(String, String) - Method in interface org.scijava.prefs.PrefService
getList(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a List from the preferences.
getList(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getList(Preferences) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a List from the preferences.
getLocation() - Method in class org.scijava.io.event.IOEvent
Gets the data location (source or destination).
getLocation() - Method in interface org.scijava.Locatable
Gets the URL string defining the object's location.
getLocation() - Method in interface org.scijava.module.ModuleInfo
 
getLocation() - Method in class org.scijava.plugin.PluginInfo
 
getLocation() - Method in class org.scijava.script.ScriptInfo
 
getLocation(String) - Static method in class org.scijava.util.ClassUtils
getLocation(String, ClassLoader) - Static method in class org.scijava.util.ClassUtils
getLocation(Class<?>) - Static method in class org.scijava.util.ClassUtils
getLocationX() - Method in interface org.scijava.ui.ApplicationFrame
Gets the X coordinate of the application frame's top left corner.
getLocationX() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
getLocationX() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
getLocationY() - Method in interface org.scijava.ui.ApplicationFrame
Gets the Y coordinate of the application frame's top left corner.
getLocationY() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
getLocationY() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
getLogger() - Method in class org.scijava.log.slf4j.SLF4JLogService
 
getLong(Class<?>, String, long) - Method in class org.scijava.prefs.DefaultPrefService
 
getLong(Class<?>, String, long) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a long.
getLong(String, long) - Method in interface org.scijava.prefs.PrefService
getLong(String, long) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getLong(Class<?>, String, long) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getLongX() - Method in class org.scijava.util.RealCoords
 
getLongY() - Method in class org.scijava.util.RealCoords
 
getLookAndFeel() - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
 
getMainClass() - Method in class org.scijava.minimaven.MavenProject
 
getMainClass() - Static method in class org.scijava.util.AppUtils
Gets the class whose main method launched the application.
getMainClassName() - Static method in class org.scijava.util.DebugUtils
Get the class whose main method launched the application.
getMains() - Method in class org.scijava.main.DefaultMainService
 
getMains() - Method in interface org.scijava.main.MainService
Gets the registered main classes to execute.
getManifest() - Method in class org.scijava.app.AbstractApp
 
getManifest() - Method in interface org.scijava.app.App
Gets the manifest containing metadata about the application.
getManifest(Class<?>) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given class.
getManifest(XML) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given XML document.
getManifest(File) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given JAR file.
getManifestData(Manifest) - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getManifestVersion() - Method in class org.scijava.util.Manifest
 
getMap(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getMap(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getMap(String, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
getMap(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets a persisted key as a Map.
getMap(Class<?>) - Method in interface org.scijava.prefs.PrefService
getMap(String) - Method in interface org.scijava.prefs.PrefService
getMap(String, String) - Method in interface org.scijava.prefs.PrefService
getMap(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a Map from the preferences.
getMap(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getMap(Preferences) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a Map from the preferences.
getMask() - Method in class org.scijava.ui.behaviour.InputTrigger
Get the modifier mask for this trigger.
getMatches() - Method in class org.scijava.script.AutoCompletionResult
 
getMax() - Method in class org.scijava.widget.DefaultWidgetModel
 
getMax() - Method in interface org.scijava.widget.WidgetModel
Gets the maximum value for the module input.
getMaxBufferSize() - Method in class org.scijava.io.ByteArrayByteBank
 
getMaxBufferSize() - Method in interface org.scijava.io.ByteBank
 
getMaxBufferSize() - Method in class org.scijava.io.nio.ByteBufferByteBank
 
getMaximum() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getMaximumGrowth() - Method in class org.scijava.util.AbstractPrimitiveArray
 
getMaximumGrowth() - Method in interface org.scijava.util.PrimitiveArray
Gets the maximal step size by which to grow the fixed-size array when running out of space.
getMaximumNumber(Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getMaximumValue() - Method in class org.scijava.command.CommandModuleItem
 
getMaximumValue() - Method in class org.scijava.module.AbstractModuleItem
 
getMaximumValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getMaximumValue() - Method in interface org.scijava.module.ModuleItem
Gets the maximum allowed value (if applicable).
getMenu(String) - Method in class org.scijava.menu.DefaultMenuService
 
getMenu() - Method in interface org.scijava.menu.MenuService
Gets the root node of the application menu structure.
getMenu(String) - Method in interface org.scijava.menu.MenuService
Gets the root node of a menu structure.
getMenu(MenuPath) - Method in class org.scijava.menu.ShadowMenu
Gets the node with the given menu path (relative to this node), or null if no such menu node.
getMenu(String) - Method in class org.scijava.menu.ShadowMenu
 
getMenuDepth() - Method in class org.scijava.menu.ShadowMenu
Gets how deep into the menu structure this node is.
getMenuEntry() - Method in class org.scijava.menu.ShadowMenu
Gets the menu entry corresponding to this node.
getMenuPath() - Method in class org.scijava.AbstractUIDetails
 
getMenuPath() - Method in class org.scijava.command.DynamicCommandInfo
 
getMenuPath() - Method in interface org.scijava.UIDetails
Gets the path to the object's suggested position in the menu structure.
getMenuPrefix(File) - Method in class org.scijava.script.DefaultScriptService
 
getMenuPrefix(File) - Method in interface org.scijava.script.ScriptService
Gets the menu path prefix for the given script directory, or null if none.
getMenuRoot() - Method in class org.scijava.AbstractUIDetails
 
getMenuRoot() - Method in class org.scijava.command.DynamicCommandInfo
 
getMenuRoot() - Method in interface org.scijava.UIDetails
Gets the name of the menu structure to which the object belongs.
getMenus() - Method in class org.scijava.platform.event.AppMenusCreatedEvent
 
getMenuString() - Method in class org.scijava.MenuPath
Gets the menu path as a string.
getMenuString(boolean) - Method in class org.scijava.MenuPath
Gets the menu path as a string, with or without the final element.
getMethodCallSyntax(String, String, String...) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getMethodCallSyntax(String, String, String...) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getMethodCallSyntax(String, String, String...) - Method in interface org.scijava.script.ScriptLanguage
 
getMethodReturnClasses(Method, Class<?>) - Static method in class org.scijava.util.GenericUtils
getMethodReturnType(Method, Class<?>) - Static method in class org.scijava.util.GenericUtils
getMillis() - Method in class org.scijava.util.TunePlayer
Gets the current note length in milliseconds, by the current tempo.
getMIMEType(Class<?>) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the best supported MIME type matching the given Java class.
getMimeTypes() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getMimeTypes() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getMimeTypes() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getMimeTypes() - Method in interface org.scijava.script.ScriptLanguage
 
getMIMETypes() - Method in class org.scijava.ui.awt.AWTDragAndDropData
 
getMIMETypes() - Method in class org.scijava.ui.dnd.DefaultDragAndDropData
 
getMIMETypes() - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the list of supported MIME types.
getMin() - Method in class org.scijava.widget.DefaultWidgetModel
 
getMin() - Method in interface org.scijava.widget.WidgetModel
Gets the minimum value for the module input.
getMinimum() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getMinimumNumber(Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getMinimumValue() - Method in class org.scijava.command.CommandModuleItem
 
getMinimumValue() - Method in class org.scijava.module.AbstractModuleItem
 
getMinimumValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getMinimumValue() - Method in interface org.scijava.module.ModuleItem
Gets the minimum allowed value (if applicable).
getMiscellany() - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getMnemonic() - Method in class org.scijava.MenuEntry
 
getMode() - Method in class org.scijava.io.handle.FileHandle
 
getModel() - Method in class org.scijava.ui.swing.script.FileSystemTree
 
getModifiedTime(File) - Static method in class org.scijava.util.FileUtils
Gets the Date of the file's last modification.
getModifiers() - Method in class org.scijava.display.event.input.InputEvent
 
getModifiers() - Method in class org.scijava.input.Accelerator
 
getModifiers() - Method in class org.scijava.input.DefaultInputService
 
getModifiers() - Method in interface org.scijava.input.InputService
 
getModule() - Method in class org.scijava.module.event.ModuleEvent
 
getModule() - Method in class org.scijava.widget.DefaultWidgetModel
 
getModule() - Method in interface org.scijava.widget.WidgetModel
Gets the module's associated module instance.
getModuleById(String) - Method in class org.scijava.module.DefaultModuleService
 
getModuleById(String) - Method in interface org.scijava.module.ModuleService
Gets the module with the given identifier string.
getModuleClass() - Method in class org.scijava.module.DefaultMutableModuleInfo
 
getModuleClass() - Method in interface org.scijava.module.MutableModuleInfo
Gets the module class described by this ModuleInfo.
getModuleForAccelerator(Accelerator) - Method in class org.scijava.module.DefaultModuleService
 
getModuleForAccelerator(Accelerator) - Method in interface org.scijava.module.ModuleService
Gets the module for a given keyboard shortcut.
getModuleInfo() - Method in class org.scijava.menu.ShadowMenu
Gets the module linked to this node, or null if node is not a leaf.
getModules() - Method in class org.scijava.module.DefaultModuleService
 
getModules() - Method in interface org.scijava.module.ModuleService
Gets the list of available modules.
getModuleService() - Method in interface org.scijava.command.CommandService
Deprecated.
getMutableInput(String, Class<T>) - Method in class org.scijava.command.DynamicCommandInfo
Gets the mutable input with the given name and type.
getMutableOutput(String, Class<T>) - Method in class org.scijava.command.DynamicCommandInfo
Gets the mutable output with the given name and type.
getMxSysInfo() - Static method in class org.scijava.nativelib.MxSysInfo
Find the mx.sysinfo string for the current jvm
getName() - Method in class org.scijava.AbstractBasicDetails
 
getName() - Method in class org.scijava.command.CommandModuleItem
 
getName() - Method in class org.scijava.command.DynamicCommandInfo
 
getName() - Method in class org.scijava.display.AbstractDisplay
 
getName() - Method in class org.scijava.io.http.HTTPLocation
 
getName() - Method in class org.scijava.io.location.BytesLocation
 
getName() - Method in class org.scijava.io.location.FileLocation
 
getName() - Method in interface org.scijava.io.location.Location
Gets a (typically short) name expressing this location.
getName() - Method in interface org.scijava.log.Logger
Returns the name of this logger.
getName() - Method in class org.scijava.menu.ShadowMenu
 
getName() - Method in class org.scijava.MenuEntry
 
getName() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getName() - Method in interface org.scijava.Named
Gets the name of the object.
getName(E) - Method in class org.scijava.object.NamedObjectIndex
 
getName(Object) - Method in interface org.scijava.object.ObjectService
Gets the name belonging to a given object.
getName() - Method in class org.scijava.task.DefaultTask
 
getName() - Method in class org.scijava.ui.behaviour.io.gui.Command
 
getName(ColorRGB) - Static method in class org.scijava.util.Colors
Gets the name of the preset matching the given color.
getNames() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getNames() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getNames() - Method in class org.scijava.plugins.scripting.kotlin.KotlinScriptLanguage
 
getNames() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getNames() - Method in interface org.scijava.script.ScriptLanguage
 
getNativeDir() - Method in class org.scijava.nativelib.BaseJniExtractor
this is where native dependencies are extracted to (e.g.
getNativeDir() - Method in class org.scijava.nativelib.DefaultJniExtractor
 
getNativeDir() - Method in class org.scijava.nativelib.WebappJniExtractor
 
getNextService(Class<S>, Class<? extends S>) - Method in class org.scijava.service.ServiceIndex
Gets the highest priority service compatible with class c, which is lower priority than the ref service.
getNextValue() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getNonprimitiveType(Class<T>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
getNonprimitiveType(Class<T>) - Static method in class org.scijava.util.ConversionUtils
getNoteLength() - Method in class org.scijava.util.TunePlayer
 
getNullValue(Class<T>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
getNullValue(Class<T>) - Static method in class org.scijava.util.ConversionUtils
Deprecated.
getNumber() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getNumClicks() - Method in class org.scijava.display.event.input.MsButtonEvent
 
getObject() - Method in class org.scijava.display.event.DisplayCreatedEvent
 
getObject() - Method in class org.scijava.display.event.DisplayDeletedEvent
 
getObject() - Method in class org.scijava.object.event.ObjectEvent
 
getObjectPool() - Method in class org.scijava.widget.DefaultWidgetModel
 
getObjectPool() - Method in interface org.scijava.widget.WidgetModel
Gets the available objects for use with the widget.
getObjects(Class<T>) - Method in interface org.scijava.object.ObjectService
Gets a list of all registered objects compatible with the given type.
getObjectService() - Method in interface org.scijava.display.DisplayService
Deprecated.
getOctave() - Method in class org.scijava.util.TunePlayer
 
getOpener(String) - Method in interface org.scijava.io.IOService
Gets the most appropriate IOPlugin for opening data from the given location.
getOpener(Location) - Method in interface org.scijava.io.IOService
Gets the most appropriate IOPlugin for opening data from the given location.
getOpener(String) - Method in interface org.scijava.io.TypedIOService
Gets the most appropriate IOPlugin for opening data from the given location.
getOpener(Location) - Method in interface org.scijava.io.TypedIOService
Gets the most appropriate IOPlugin for opening data from the given location.
getOptions(Class<O>) - Method in class org.scijava.options.DefaultOptionsService
 
getOptions() - Method in class org.scijava.options.event.OptionsEvent
 
getOptions(Class<O>) - Method in interface org.scijava.options.OptionsService
Gets the options plugin of the given class, or null if none.
getOrCreate(Class<P>, PluginIndex) - Static method in class org.scijava.plugin.PluginInfo
Obtains a PluginInfo for the given plugin class.
getOrCreate(Class<P>, Class<PT>, PluginIndex) - Static method in class org.scijava.plugin.PluginInfo
Obtains a PluginInfo for the given plugin class.
getOrder() - Method in class org.scijava.io.handle.AbstractDataHandle
 
getOrder() - Method in interface org.scijava.io.handle.DataHandle
Returns the byte order of the stream.
getOrganizationName() - Method in class org.scijava.util.POM
Gets the organization name.
getOrganizationURL() - Method in class org.scijava.util.POM
Gets the organization URL.
getOutput(String) - Method in class org.scijava.command.CommandInfo
 
getOutput(String, Class<T>) - Method in class org.scijava.command.CommandInfo
 
getOutput(String) - Method in class org.scijava.command.CommandModule
 
getOutput(String) - Method in class org.scijava.command.DynamicCommand
 
getOutput() - Method in class org.scijava.console.OutputEvent
Gets the output string.
getOutput(String) - Method in class org.scijava.module.AbstractModule
 
getOutput(String) - Method in class org.scijava.module.AbstractModuleInfo
 
getOutput(String, Class<T>) - Method in class org.scijava.module.AbstractModuleInfo
 
getOutput(String) - Method in interface org.scijava.module.Module
Gets the value of the output with the given name.
getOutput(String) - Method in interface org.scijava.module.ModuleInfo
Gets the output item with the given name.
getOutput(String, Class<T>) - Method in interface org.scijava.module.ModuleInfo
Gets the output item with the given name and type.
getOutput() - Method in class org.scijava.plugins.commands.debug.TextDisplayTest
 
getOutputField(String) - Method in class org.scijava.command.DynamicCommandInfo
Gets the Field corresponding to the given @Parameter annotated module output, or null if the output does not exist or was not declared using the @Parameter mechanism.
getOutputs() - Method in class org.scijava.module.AbstractModule
 
getOutputs() - Method in interface org.scijava.module.Module
Gets a table of output values.
getOutputStatement(String) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getOutputStatement(String) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getOutputStatement(String) - Method in interface org.scijava.script.ScriptLanguage
 
getOutputStream() - Method in class org.scijava.ui.swing.script.OutputPane
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.CastingConverter
 
getOutputType() - Method in interface org.scijava.convert.Converter
 
getOutputType() - Method in class org.scijava.convert.DefaultConverter
 
getOutputType() - Method in class org.scijava.convert.FileListConverters.FileArrayToStringConverter
 
getOutputType() - Method in class org.scijava.convert.FileListConverters.FileToStringConverter
 
getOutputType() - Method in class org.scijava.convert.FileListConverters.StringToFileArrayConverter
 
getOutputType() - Method in class org.scijava.convert.FileListConverters.StringToFileConverter
 
getOutputType() - Method in class org.scijava.convert.NullConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToBigDecimalConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToBigIntegerConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToDoubleConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToFloatConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToIntegerConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToLongConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToShortConverter
 
getOutputWriter() - Method in class org.scijava.ui.swing.script.OutputPane
 
getPackage() - Method in class org.scijava.util.Manifest
 
getPackaging() - Method in class org.scijava.minimaven.MavenProject
 
getPanel() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeRenderer
 
getPanel() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
getPanel() - Method in interface org.scijava.ui.viewer.DisplayViewer
Gets the display panel that hosts the gui elements.
getPanel() - Method in class org.scijava.widget.DefaultWidgetModel
 
getPanel() - Method in interface org.scijava.widget.WidgetModel
Gets the input panel intended to house the widget.
getParam(LinkedList<String>) - Method in class org.scijava.console.AbstractConsoleArgument
If the next argument is an appropriate parameter to a ConsoleArgument, retrieves it; otherwise, returns null.
getParameter() - Method in class org.scijava.command.CommandModuleItem
 
getParameter(String) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getParameter(String) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getParameter(String) - Method in interface org.scijava.script.ScriptLanguage
 
getParameter(String) - Method in class org.scijava.ui.dnd.MIMEType
Gets the value of the parameter with the given name, or null if none.
getParameters() - Method in class org.scijava.ui.dnd.MIMEType
Gets the parameter names associated with this MIME type.
getParent() - Method in class org.scijava.console.MultiPrintStream
 
getParent() - Method in class org.scijava.menu.ShadowMenu
Gets this node's parent, or null if it is a root node.
getParent() - Method in class org.scijava.minimaven.MavenProject
 
getParent(Thread) - Method in class org.scijava.thread.DefaultThreadService
 
getParent(Thread) - Method in interface org.scijava.thread.ThreadService
Returns the thread that called the specified thread.
getParent() - Method in class org.scijava.ui.behaviour.BehaviourMap
Gets this BehaviourMap's parent.
getParent() - Method in class org.scijava.ui.behaviour.InputTriggerMap
Gets this InputTriggerMap's parent.
getParent() - Method in class org.scijava.ui.behaviour.util.WrappedActionMap
 
getParent() - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
getParent() - Method in class org.scijava.ui.behaviour.util.WrappedInputMap
 
getParent() - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
getParent() - Method in class org.scijava.ui.swing.SwingDialog
Gets the frame in which the dialog is displayed.
getParentArtifactId() - Method in class org.scijava.util.POM
Gets the POM's parent artifactId.
getParentGroupId() - Method in class org.scijava.util.POM
Gets the POM's parent groupId.
getParentVersion() - Method in class org.scijava.util.POM
Gets the POM's parent artifactId.
getParser() - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
getParser() - Method in interface org.scijava.parsington.eval.Evaluator
Gets the parser used when evaluating expressions.
getPath() - Method in class org.scijava.script.ScriptInfo
Gets the path to the script on disk.
getPath() - Method in class org.scijava.ui.swing.script.ErrorHandler
 
getPath(File) - Static method in class org.scijava.util.FileUtils
Gets the absolute path to the given file, with the directory separator standardized to forward slash, like most platforms use.
getPath(String, String) - Static method in class org.scijava.util.FileUtils
Gets a standardized path based on the given one, with the directory separator standardized from the specific separator to forward slash, like most platforms use.
getPath() - Method in class org.scijava.util.XML
Gets the path to the XML document, or null if none.
getPersistKey() - Method in class org.scijava.command.CommandModuleItem
 
getPersistKey() - Method in class org.scijava.module.AbstractModuleItem
 
getPersistKey() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getPersistKey() - Method in interface org.scijava.module.ModuleItem
Gets the key to use for saving the value persistently.
getPlatformLibraryName(String) - Static method in class org.scijava.nativelib.NativeLibraryUtil
Returns the full file name (without path) of the native library.
getPlatformLibraryPath(String) - Static method in class org.scijava.nativelib.NativeLibraryUtil
Returns the path to the native library.
getPlatformService() - Method in class org.scijava.platform.AbstractPlatform
 
getPlatformService() - Method in class org.scijava.ui.swing.script.TextEditor
 
getPlugin(Class<P>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPlugin(Class<P>, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPlugin(String) - Method in class org.scijava.plugin.DefaultPluginService
 
getPlugin(Class<P>) - Method in interface org.scijava.plugin.PluginService
Gets the first available plugin of the given class, or null if none.
getPlugin(Class<P>, Class<PT>) - Method in interface org.scijava.plugin.PluginService
Gets the first available plugin of the given class, or null if none.
getPlugin(String) - Method in interface org.scijava.plugin.PluginService
Gets the first available plugin of the given class name, or null if none.
getPluginClass() - Method in class org.scijava.command.CommandInfo
 
getPluginClass() - Method in class org.scijava.plugin.PluginInfo
Obtains the Class of the item objects, if that class has already been loaded.
getPluginIndex() - Method in class org.scijava.Context
 
getPluginRootDirectory(File) - Method in class org.scijava.ui.swing.script.FileFunctions
 
getPlugins() - Method in class org.scijava.plugin.DefaultPluginService
 
getPlugins(Class<PT>) - Method in class org.scijava.plugin.PluginIndex
Gets a list of registered plugins compatible with the given type.
getPlugins() - Method in interface org.scijava.plugin.PluginService
Gets the list of known plugins.
getPlugins() - Method in interface org.scijava.plugin.PTService
Gets the plugins managed by this service.
getPluginService() - Method in interface org.scijava.display.DisplayService
Deprecated.
getPluginService() - Method in interface org.scijava.plugin.PTService
Deprecated.
getPluginsOfClass(Class<P>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfClass(Class<P>, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfClass(String) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfClass(String, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfClass(Class<P>) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins of the given class.
getPluginsOfClass(Class<P>, Class<PT>) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins of the given class.
getPluginsOfClass(String) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins with the given class name.
getPluginsOfClass(String, Class<PT>) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins with the given class name.
getPluginsOfType(Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfType(Class<PT>) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins of the given type (e.g., Service).
getPluginType() - Method in interface org.scijava.app.AppService
 
getPluginType() - Method in class org.scijava.batch.FileBatchService
 
getPluginType() - Method in class org.scijava.command.DefaultCommandService
 
getPluginType() - Method in interface org.scijava.console.ConsoleService
 
getPluginType() - Method in class org.scijava.convert.AbstractConvertService
 
getPluginType() - Method in interface org.scijava.io.handle.DataHandleService
 
getPluginType() - Method in interface org.scijava.io.IOService
 
getPluginType() - Method in interface org.scijava.io.location.LocationService
 
getPluginType() - Method in interface org.scijava.io.TypedIOService
 
getPluginType() - Method in interface org.scijava.options.OptionsService
 
getPluginType() - Method in class org.scijava.platform.DefaultPlatformService
 
getPluginType(Class<P>) - Static method in class org.scijava.plugin.DefaultPluginService
Gets the plugin type of the given plugin class, as declared by its @Plugin annotation (i.e., Plugin.type()).
getPluginType() - Method in class org.scijava.plugin.PluginInfo
Gets the type of plugin described by the metadata.
getPluginType() - Method in interface org.scijava.plugin.PTService
Gets the type of plugins managed by this service.
getPluginType() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
getPluginType() - Method in interface org.scijava.run.RunService
 
getPluginType() - Method in interface org.scijava.script.process.ScriptProcessorService
 
getPluginType() - Method in interface org.scijava.script.ScriptHeaderService
 
getPluginType() - Method in interface org.scijava.script.ScriptService
 
getPluginType() - Method in interface org.scijava.search.SearchService
 
getPluginType() - Method in class org.scijava.text.DefaultTextService
 
getPluginType() - Method in interface org.scijava.tool.ToolService
 
getPluginType() - Method in interface org.scijava.ui.dnd.DragAndDropService
 
getPluginType() - Method in class org.scijava.ui.swing.script.DefaultLanguageSupportService
 
getPluginType() - Method in interface org.scijava.widget.WidgetService
 
getPOM() - Method in class org.scijava.app.AbstractApp
 
getPOM() - Method in interface org.scijava.app.App
Gets the Maven POM containing metadata about the application.
getPOM(Class<?>) - Static method in class org.scijava.util.POM
Gets the Maven POM associated with the given class.
getPOM(Class<?>, String, String) - Static method in class org.scijava.util.POM
Gets the Maven POM associated with the given class.
getPOMName() - Method in class org.scijava.minimaven.Coordinate
 
getPOMName(boolean) - Method in class org.scijava.minimaven.Coordinate
 
getPosition() - Method in class org.scijava.ui.swing.script.ErrorHandler
 
getPrecedence() - Method in class org.scijava.parsington.Operator
 
getPrefix(int) - Method in class org.scijava.log.AbstractLogService
Deprecated.
getPresets() - Method in class org.scijava.command.CommandInfo
Gets the table of items with fixed, preset values.
getPressedKeys() - Method in class org.scijava.ui.behaviour.InputTrigger
 
getPreviousValue() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getPrevService(Class<S>, Class<? extends S>) - Method in class org.scijava.service.ServiceIndex
Gets the lowest priority service compatible with class c, which is higher priority than the ref service.
getPrimitiveType(Class<T>) - Static method in class org.scijava.util.ConversionUtils
getPriority() - Method in class org.scijava.AbstractUIDetails
 
getPriority() - Method in class org.scijava.command.DynamicCommandInfo
 
getPriority() - Method in class org.scijava.plugin.AbstractRichPlugin
 
getPriority() - Method in interface org.scijava.Prioritized
Gets the sort priority of the object.
getProblems() - Method in class org.scijava.command.CommandInfo
 
getProblems() - Method in class org.scijava.command.DynamicCommandInfo
 
getProblems() - Method in class org.scijava.module.MethodRef
 
getProblems() - Method in interface org.scijava.module.ModuleInfo
 
getProblems() - Method in interface org.scijava.Validated
Gets the list of problems encountered while initializing the object.
getProcessedScript() - Method in class org.scijava.script.ScriptInfo
Gets the script contents after script processing.
getProcessor() - Method in class org.scijava.module.event.ModulePostprocessEvent
 
getProcessor() - Method in class org.scijava.module.event.ModulePreprocessEvent
 
getProcessor() - Method in class org.scijava.module.event.ModuleProcessEvent
 
getProgram(String...) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getProgram(String...) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getProgram(String...) - Method in interface org.scijava.script.ScriptLanguage
 
getProgressMaximum() - Method in class org.scijava.app.event.StatusEvent
Gets progress maximum.
getProgressMaximum() - Method in class org.scijava.task.DefaultTask
 
getProgressMaximum() - Method in interface org.scijava.task.Task
Gets the number of steps the task performs in total.
getProgressValue() - Method in class org.scijava.app.event.StatusEvent
Gets progress value.
getProgressValue() - Method in class org.scijava.task.DefaultTask
 
getProgressValue() - Method in interface org.scijava.task.Task
Gets the step the task is currently performing.
getProjectDescription() - Method in class org.scijava.util.POM
Gets the project description.
getProjectInceptionYear() - Method in class org.scijava.util.POM
Gets the project inception year.
getProjectName() - Method in class org.scijava.util.POM
Gets the project name.
getProjectURL() - Method in class org.scijava.util.POM
Gets the project URL.
getPrompt() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
getProperty(String) - Method in class org.scijava.minimaven.MavenProject
Returns the (possibly project-specific) value of a property.
getQueryMap() - Method in class org.scijava.io.location.URILocation
 
getQueryValue(String) - Method in class org.scijava.io.location.URILocation
 
getRandomAccessFile() - Method in class org.scijava.io.handle.FileHandle
Gets the random access file object backing this FileHandle.
getReader() - Method in class org.scijava.script.AbstractScriptContext
 
getReader() - Method in class org.scijava.script.ScriptInfo
Gets a reader which delivers the script's content.
getReason() - Method in class org.scijava.module.event.ModuleCanceledEvent
 
getRecentFiles() - Method in class org.scijava.io.DefaultRecentFileService
 
getRecentFiles() - Method in interface org.scijava.io.RecentFileService
Gets the list of recent files.
getRed(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getRed() - Method in class org.scijava.util.ColorRGB
 
getRegex() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
getREPL() - Method in class org.scijava.ui.swing.script.InterpreterPane
Gets the associated script REPL.
getREPL() - Method in class org.scijava.ui.swing.script.InterpreterWindow
Gets the window's associated ScriptREPL.
getRepositories() - Method in class org.scijava.minimaven.MavenProject
 
getRepositories(Set<String>) - Method in class org.scijava.minimaven.MavenProject
 
getResolver(URI) - Method in interface org.scijava.io.location.LocationService
Deprecated.
getResource(String) - Method in class org.scijava.minimaven.JarClassLoader
 
getResourceAsStream(String) - Method in class org.scijava.minimaven.JarClassLoader
 
getResourceAsStream(String, boolean) - Method in class org.scijava.minimaven.JarClassLoader
 
getResourceList(String) - Method in class org.scijava.ui.swing.script.FileFunctions
Get a list of files from a directory or within a .jar file The returned items will only have the base path, to get at the full URL you have to prefix the url passed to the function.
getResult() - Method in exception org.scijava.minimaven.JavaCompiler.CompileError
 
getResult() - Method in interface org.scijava.script.CodeGenerator
Deprecated.
 
getResult() - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
getResultLimit() - Method in class org.scijava.ui.swing.search.SwingSearchBar
Gets the maximum number of results per search category.
getReturnValue() - Method in class org.scijava.script.ScriptModule
Gets the return value of the script.
getRoot() - Method in class org.scijava.minimaven.MavenProject
 
getRowCount() - Method in class org.scijava.table.AbstractTable
 
getRowCount() - Method in interface org.scijava.table.Table
Gets the number of rows in the table.
getRowCount() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getRowCount() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.NullTableModel
 
getRowCount() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.TableModel
 
getRowHeader(int) - Method in class org.scijava.table.AbstractTable
 
getRowHeader(int) - Method in interface org.scijava.table.Table
Gets the row header at the given row.
getRowHeight() - Method in class org.scijava.ui.swing.script.PromptPane.TextArea
 
getRowIndex(String) - Method in interface org.scijava.table.Table
Gets the row index of the row with the given header.
getRSyntaxDocument() - Method in class org.scijava.ui.swing.script.EditorPane
 
getSampleRate() - Method in class org.scijava.util.TunePlayer
 
getSaver(D, String) - Method in interface org.scijava.io.IOService
Gets the most appropriate IOPlugin for saving data to the given location.
getSaver(D, Location) - Method in interface org.scijava.io.IOService
Gets the most appropriate IOPlugin for saving data to the given location.
getSaver(D, String) - Method in interface org.scijava.io.TypedIOService
Gets the most appropriate IOPlugin for saving data to the given location.
getSaver(D, Location) - Method in interface org.scijava.io.TypedIOService
Gets the most appropriate IOPlugin for saving data to the given location.
getSCMConnection() - Method in class org.scijava.util.POM
Gets the SCM connection string.
getSCMDeveloperConnection() - Method in class org.scijava.util.POM
Gets the SCM developerConnection string.
getSCMTag() - Method in class org.scijava.util.POM
Gets the SCM tag.
getSCMURL() - Method in class org.scijava.util.POM
Gets the SCM URL.
getScopes() - Method in class org.scijava.script.AbstractScriptContext
 
getScreen() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
getScreenInstance() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
getScript(File) - Method in class org.scijava.script.DefaultScriptService
 
getScript(File) - Method in interface org.scijava.script.ScriptService
Gets the cached ScriptInfo metadata for the script at the given file, creating it if it does not already exist.
getScriptDirectories() - Method in class org.scijava.script.DefaultScriptService
 
getScriptDirectories() - Method in interface org.scijava.script.ScriptService
Gets the base directories to scan for scripts.
getScriptEngine() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.scala.ScalaScriptLanguage
 
getScriptEngine() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getScripts() - Method in class org.scijava.script.DefaultScriptService
 
getScripts() - Method in interface org.scijava.script.ScriptService
Gets all available scripts.
getSearchContext(boolean) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
getSearchField() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
Gets the JTextField component for specifying the search string.
getSelectedClassNameOrAsk() - Method in class org.scijava.ui.swing.script.TextEditor
 
getSelectedTags() - Method in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
getSelectedTextOrAsk(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
getSelectionGroup() - Method in class org.scijava.AbstractUIDetails
 
getSelectionGroup() - Method in class org.scijava.command.DynamicCommandInfo
 
getSelectionGroup() - Method in interface org.scijava.UIDetails
Gets the name of the selection group to which the object belongs.
getService(Class<S>) - Method in class org.scijava.Context
Gets the service of the given class, or null if there is no matching service.
getService(String) - Method in class org.scijava.Context
Gets the service of the given class name (useful for scripts).
getService(Class<S>) - Method in class org.scijava.service.ServiceIndex
Gets the first available service compatible with the given class.
getServiceIndex() - Method in class org.scijava.Context
 
getShortName() - Method in class org.scijava.AbstractGateway
 
getShortName() - Method in interface org.scijava.Gateway
Gets a very succinct name for use referring to this gateway, e.g.
getSingleInput(Module, Class<T>) - Method in class org.scijava.module.DefaultModuleService
 
getSingleInput(Module, Collection<Class<?>>) - Method in class org.scijava.module.DefaultModuleService
 
getSingleInput(Module, Class<T>) - Method in interface org.scijava.module.ModuleService
Checks the given module for a solitary unresolved fillable input of the given type, returning the relevant ModuleItem if found, or null if not exactly one unresolved fillable input of that type.
getSingleInput(Module, Collection<Class<?>>) - Method in interface org.scijava.module.ModuleService
As ModuleService.getSingleInput(Module, Class) but will match with a set of potential classes, at the cost of generic parameter safety.
getSingleInput(Module, Class<?>) - Method in class org.scijava.module.process.AbstractSingleInputPreprocessor
Helper method to look up the name of singleton module inputs of a given type.
getSingleOutput(Module, Class<T>) - Method in class org.scijava.module.DefaultModuleService
 
getSingleOutput(Module, Collection<Class<?>>) - Method in class org.scijava.module.DefaultModuleService
 
getSingleOutput(Module, Class<T>) - Method in interface org.scijava.module.ModuleService
Checks the given module for a solitary unresolved output of the given type, returning the relevant ModuleItem if found, or null if not exactly one unresolved output of that type.
getSingleOutput(Module, Collection<Class<?>>) - Method in interface org.scijava.module.ModuleService
As ModuleService.getSingleOutput(Module, Class) but will match with a set of potential classes, at the cost of generic parameter safety.
getSoftMax() - Method in class org.scijava.widget.DefaultWidgetModel
 
getSoftMax() - Method in interface org.scijava.widget.WidgetModel
Gets the "soft" maximum value for the module input.
getSoftMaximum() - Method in class org.scijava.module.AbstractModuleItem
 
getSoftMaximum() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getSoftMaximum() - Method in interface org.scijava.module.ModuleItem
Gets the "soft" maximum value (if applicable).
getSoftMin() - Method in class org.scijava.widget.DefaultWidgetModel
 
getSoftMin() - Method in interface org.scijava.widget.WidgetModel
Gets the "soft" minimum value for the module input.
getSoftMinimum() - Method in class org.scijava.module.AbstractModuleItem
 
getSoftMinimum() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getSoftMinimum() - Method in interface org.scijava.module.ModuleItem
Gets the "soft" minimum value (if applicable).
getSource() - Method in class org.scijava.console.OutputEvent
Gets the source of the output.
getSource() - Method in class org.scijava.io.event.DataOpenedEvent
Deprecated.
getSource() - Method in class org.scijava.log.AbstractLogService
 
getSource() - Method in class org.scijava.log.DefaultLogger
 
getSource() - Method in interface org.scijava.log.Logger
Returns the LogSource associated with this logger.
getSourceDirectory() - Method in class org.scijava.minimaven.MavenProject
 
getSourcePath() - Method in class org.scijava.minimaven.MavenProject
 
getSourcePath(String) - Method in class org.scijava.ui.swing.script.FileFunctions
Deprecated.
getSourceURL(String) - Method in class org.scijava.ui.swing.script.FileFunctions
 
getSpecificationTitle() - Method in class org.scijava.util.Manifest
 
getSpecificationVendor() - Method in class org.scijava.util.Manifest
 
getSpecificationVersion() - Method in class org.scijava.util.Manifest
 
getStackDump(Thread) - Static method in class org.scijava.util.DebugUtils
Provides a stack dump of the given thread.
getStackDump(Thread, StackTraceElement[]) - Static method in class org.scijava.util.DebugUtils
Provides a stack dump of the given thread + call stack.
getStackDump() - Static method in class org.scijava.util.DebugUtils
Provides a complete stack dump of all threads.
getStackTrace() - Method in class org.scijava.event.SciJavaEvent
Gets the stack trace of the calling thread when the event was published.
getStackTrace(Throwable) - Static method in class org.scijava.util.DebugUtils
Extracts the given exception's corresponding stack trace to a string.
getStartIndex() - Method in class org.scijava.script.AutoCompletionResult
 
getStatusBar() - Method in class org.scijava.ui.awt.AWTUI
 
getStatusBar() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getStatusBar() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava status bar, or null if not applicable.
getStatusMessage(String, StatusEvent) - Method in class org.scijava.app.DefaultStatusService
 
getStatusMessage() - Method in class org.scijava.app.event.StatusEvent
Gets status message, or null for no change.
getStatusMessage(String, StatusEvent) - Method in interface org.scijava.app.StatusService
Gets the status message of the given event.
getStatusMessage() - Method in class org.scijava.task.DefaultTask
 
getStatusMessage() - Method in interface org.scijava.task.Task
Gets a status message describing what the task is currently doing.
getStatusMessage(StatusEvent) - Method in class org.scijava.ui.DefaultUIService
 
getStatusMessage(StatusEvent) - Method in interface org.scijava.ui.UIService
Gets the status message associated with the given event.
getStepSize() - Method in class org.scijava.command.CommandModuleItem
 
getStepSize() - Method in class org.scijava.module.AbstractModuleItem
 
getStepSize() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getStepSize() - Method in interface org.scijava.module.ModuleItem
Gets the preferred step size to use when rendering the item in a user interface (if applicable).
getStepSize() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getStepSize() - Method in class org.scijava.widget.DefaultWidgetModel
 
getStepSize() - Method in interface org.scijava.widget.WidgetModel
Gets the step size between values for the module input.
getStyleModifier(String, String) - Static method in class org.scijava.widget.WidgetStyle
Get the modifying value for a given style attribute in a style declaration.
getStyleModifiers(String, String) - Static method in class org.scijava.widget.WidgetStyle
Get an array of all modifying values for a given style attribute.
getSubscriberLog() - Method in class org.scijava.plugins.commands.debug.ShowSubscribers
 
getSubscribers(Class<E>) - Method in class org.scijava.event.DefaultEventService
 
getSubscribers(Class<E>) - Method in interface org.scijava.event.EventService
Gets a list of all subscribers to the given event class (and subclasses thereof).
getSummary() - Method in class org.scijava.ui.swing.script.autocompletion.ImportCompletionImpl
 
getSystemClipboard() - Method in class org.scijava.ui.awt.AWTUI
 
getSystemClipboard() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getSystemClipboard() - Method in interface org.scijava.ui.UserInterface
Gets the system clipboard associated with this UI, or null if not applicable.
getSystemProperties() - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getSystemProperty() - Method in interface org.scijava.app.App
A system property which, if set, overrides the base directory of the application.
getSystemProperty(String, String) - Static method in class org.scijava.minimaven.MiniMaven
 
getTab() - Method in class org.scijava.ui.swing.script.TextEditor
Get the currently selected tab.
getTab(int) - Method in class org.scijava.ui.swing.script.TextEditor
Get tab at provided index.
getTarget() - Method in class org.scijava.minimaven.MavenProject
 
getTargetPlatforms() - Method in class org.scijava.platform.DefaultPlatformService
 
getTargetPlatforms() - Method in interface org.scijava.platform.PlatformService
Gets the platform handlers applicable to this platform.
getTargetWidgetStyle(ModuleItem<?>) - Method in interface org.scijava.batch.input.BatchInputProvider
 
getTargetWidgetStyle(ModuleItem<?>) - Method in class org.scijava.batch.input.FileBatchInputProvider
 
getTask() - Method in class org.scijava.task.event.TaskEvent
 
getTempDir() - Static method in class org.scijava.nativelib.BaseJniExtractor
 
getTempo() - Method in class org.scijava.util.TunePlayer
 
getTerminator() - Method in class org.scijava.parsington.Group
 
getText() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
getText(Token) - Static method in class org.scijava.ui.swing.script.TokenFunctions
 
getText(int, int) - Method in class org.scijava.ui.swing.script.TokenFunctions
 
getText(TransferHandler.TransferSupport) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget
Gets the String content of the current transfer support
getText() - Method in class org.scijava.widget.DefaultWidgetModel
 
getText() - Method in interface org.scijava.widget.WidgetModel
Gets the input's value rendered as a string.
getTextArea() - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
getTextArea() - Method in class org.scijava.ui.swing.script.TextEditor
 
getTextPane() - Method in class org.scijava.ui.swing.console.ConsolePanel
 
getThreadContext(Thread) - Method in class org.scijava.thread.DefaultThreadService
 
getThreadContext(Thread) - Method in interface org.scijava.thread.ThreadService
Analyzes the Context of the given thread.
getTimeout() - Method in class org.scijava.io.location.AbstractRemoteLocation
 
getTimeout() - Method in interface org.scijava.io.location.RemoteLocation
Gets the connection timeout for this location.
getTimestamp() - Method in class org.scijava.event.EventDetails
 
getTitle() - Method in class org.scijava.AbstractGateway
 
getTitle() - Method in interface org.scijava.app.App
Gets the title of the application.
getTitle() - Method in class org.scijava.command.CommandInfo
 
getTitle() - Method in class org.scijava.command.DynamicCommandInfo
 
getTitle() - Method in interface org.scijava.Gateway
 
getTitle() - Method in interface org.scijava.module.ModuleInfo
 
getTitle() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
getTitle() - Method in class org.scijava.ui.swing.SwingDialog
Gets the title string that will be displayed in the dialog title bar.
getTitle() - Method in interface org.scijava.UIDetails
Gets an appropriate title for the object, for use in a user interface.
getToken() - Method in class org.scijava.parsington.Token
Gets the token's sequence of characters.
getTokenList(Segment, int, int) - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Returns the first token in the linked list of tokens generated from text.
getTokenList(Segment, int, int) - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Returns the first token in the linked list of tokens generated from text.
getTone(int, char) - Method in class org.scijava.util.TunePlayer
Gets the value of the given tone for the current octave.
getTool(String) - Method in class org.scijava.tool.DefaultToolService
 
getTool() - Method in class org.scijava.tool.event.ToolEvent
 
getTool(String) - Method in interface org.scijava.tool.ToolService
 
getTool(Class<T>) - Method in interface org.scijava.tool.ToolService
Get a tool given its class.
getToolBar() - Method in class org.scijava.ui.awt.AWTUI
 
getToolBar() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getToolBar() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava toolbar, or null if not applicable.
getTools() - Method in class org.scijava.tool.DefaultToolService
 
getTools() - Method in interface org.scijava.tool.ToolService
 
getTopFrame(Component) - Static method in class org.scijava.ui.swing.StaticSwingUtils
Finds the top-level JFrame in the component tree containing a given component.
getTopLeft() - Method in class org.scijava.util.IntRect
Gets the top left coordinate of the rectangle.
getTopLeft() - Method in class org.scijava.util.RealRect
Gets the top left coordinate of the rectangle.
getTopLevelFoldersString() - Method in class org.scijava.ui.swing.script.FileSystemTree
For persistence.
getTransferData(DataFlavor) - Method in class org.scijava.ui.awt.AWTClipboard
 
getTransferDataFlavors() - Method in class org.scijava.ui.awt.AWTClipboard
 
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeRenderer
 
getTriggers() - Method in class org.scijava.ui.behaviour.io.InputTriggerDescription
 
getType() - Method in class org.scijava.batch.FileBatchService
 
getType() - Method in interface org.scijava.batch.input.BatchInputProvider
 
getType() - Method in class org.scijava.command.CommandModuleItem
 
getType() - Method in interface org.scijava.console.ConsoleArgument
 
getType() - Method in interface org.scijava.console.ConsoleService
 
getType() - Method in class org.scijava.convert.AbstractConverter
 
getType() - Method in class org.scijava.convert.AbstractConvertService
 
getType() - Method in class org.scijava.download.MultiWriteHandle
 
getType() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
getType() - Method in class org.scijava.io.handle.BytesHandle
 
getType() - Method in interface org.scijava.io.handle.DataHandleService
 
getType() - Method in class org.scijava.io.handle.DummyHandle
 
getType() - Method in class org.scijava.io.handle.FileHandle
 
getType() - Method in class org.scijava.io.http.HTTPHandle
 
getType() - Method in interface org.scijava.io.IOPlugin
 
getType() - Method in interface org.scijava.io.IOService
 
getType() - Method in class org.scijava.io.location.AbstractLocationResolver
 
getType() - Method in interface org.scijava.io.location.LocationService
 
getType() - Method in interface org.scijava.io.TypedIOService
 
getType() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getType() - Method in interface org.scijava.module.ModuleItem
Gets the type of the item.
getType(E) - Method in class org.scijava.object.ObjectIndex
Return the type by which to index the object.
getType(PluginInfo<?>) - Method in class org.scijava.plugin.PluginIndex
Overrides the type by which the entries are indexed.
getType() - Method in interface org.scijava.run.CodeRunner
 
getType() - Method in interface org.scijava.run.RunService
 
getType() - Method in interface org.scijava.script.ScriptHeader
 
getType() - Method in interface org.scijava.script.ScriptHeaderService
 
getType() - Method in interface org.scijava.search.SearchActionFactory
 
getType() - Method in class org.scijava.table.BoolColumn
 
getType() - Method in class org.scijava.table.ByteColumn
 
getType() - Method in class org.scijava.table.CharColumn
 
getType() - Method in interface org.scijava.table.Column
Returns the actual type of data stored in the column.
getType() - Method in class org.scijava.table.DefaultColumn
 
getType() - Method in class org.scijava.table.DoubleColumn
 
getType() - Method in class org.scijava.table.FloatColumn
 
getType() - Method in class org.scijava.table.IntColumn
 
getType() - Method in class org.scijava.table.LongColumn
 
getType() - Method in class org.scijava.table.ShortColumn
 
getType() - Method in class org.scijava.text.DefaultTextService
 
getType() - Method in interface org.scijava.text.TextFormat
 
getType() - Method in interface org.scijava.Typed
Gets the type associated with the object.
getType() - Method in interface org.scijava.ui.dnd.DragAndDropService
 
getType() - Method in class org.scijava.ui.dnd.FileDragAndDropHandler
 
getType() - Method in class org.scijava.ui.dnd.ListDragAndDropHandler
 
getType() - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler
 
getType() - Method in interface org.scijava.widget.InputWidget
 
getType() - Method in interface org.scijava.widget.WidgetService
 
getTypeParameter(Type, Class<?>, int) - Static method in class org.scijava.util.GenericUtils
getTypes(Class<?>) - Static method in class org.scijava.object.ObjectIndex
Gets a new set containing the type and all its supertypes.
getTypes(Field, Class<?>) - Static method in class org.scijava.util.ClassUtils
getUI() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
Gets the name (or class name) of the input harvester's affiliated UI.
getUI() - Method in class org.scijava.ui.awt.widget.AWTInputHarvester
 
getUI(String) - Method in class org.scijava.ui.DefaultUIService
 
getUI() - Method in class org.scijava.ui.event.UIEvent
Gets the user interface.
getUI() - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
Deprecated.
getUI() - Method in class org.scijava.ui.swing.widget.SwingInputHarvester
 
getUI() - Method in class org.scijava.ui.swing.widget.SwingMdiInputHarvester
 
getUI(String) - Method in interface org.scijava.ui.UIService
Gets the UI with the given name (or class name).
getURI() - Method in class org.scijava.io.http.HTTPLocation
Gets the associated URI, or null if this URL is not formatted strictly according to to RFC2396 and cannot be converted to a URI.
getURI() - Method in class org.scijava.io.location.FileLocation
 
getURI() - Method in interface org.scijava.io.location.Location
Gets the location expressed as a URI, or null if the location cannot be expressed as such.
getURI() - Method in class org.scijava.io.location.URILocation
 
getURI() - Method in class org.scijava.io.location.URLLocation
Gets the associated URI, or null if this URL is not formatted strictly according to RFC2396 and cannot be converted to a URI.
getURL() - Method in class org.scijava.io.http.HTTPLocation
Gets the associated URL.
getURL() - Method in class org.scijava.io.location.URLLocation
Gets the associated URL.
getURL() - Method in class org.scijava.script.ScriptInfo
Gets the URL of the script.
getUserObject() - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
getValidater() - Method in class org.scijava.command.CommandModuleItem
 
getValidater() - Method in class org.scijava.module.AbstractModuleItem
 
getValidater() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getValidater() - Method in interface org.scijava.module.ModuleItem
Gets the function that is called to validate the item's value.
getValue() - Method in class org.scijava.batch.SwingScriptInfoWidget
 
getValue(Module) - Method in class org.scijava.module.AbstractModuleItem
 
getValue(Module) - Method in interface org.scijava.module.ModuleItem
Gets the item's current value with respect to the given module.
getValue(int, int) - Method in interface org.scijava.table.BoolTable
Gets the value of the given table cell.
getValue(int, int) - Method in interface org.scijava.table.ByteTable
Gets the value of the given table cell.
getValue(int, int) - Method in interface org.scijava.table.CharTable
Gets the value of the given table cell.
getValue(int, int) - Method in interface org.scijava.table.DoubleTable
Gets the value of the given table cell.
getValue(int, int) - Method in interface org.scijava.table.FloatTable
Gets the value of the given table cell.
getValue(int, int) - Method in interface org.scijava.table.IntTable
Gets the value of the given table cell.
getValue(int, int) - Method in interface org.scijava.table.LongTable
Gets the value of the given table cell.
getValue(int, int) - Method in interface org.scijava.table.ShortTable
Gets the value of the given table cell.
getValue() - Method in class org.scijava.ui.awt.widget.AWTButtonWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTChoiceWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTObjectWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTTextWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTToggleWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingButtonWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingToggleWidget
 
getValue(int) - Method in class org.scijava.util.BoolArray
 
getValue(int) - Method in class org.scijava.util.ByteArray
 
getValue(int) - Method in class org.scijava.util.CharArray
 
getValue(Field, Object) - Static method in class org.scijava.util.ClassUtils
Gets the given field's value of the specified object instance, or null if the value cannot be obtained.
getValue(int) - Method in class org.scijava.util.DoubleArray
 
getValue(int) - Method in class org.scijava.util.FloatArray
 
getValue(int) - Method in class org.scijava.util.IntArray
 
getValue(int) - Method in class org.scijava.util.LongArray
 
getValue(int) - Method in class org.scijava.util.ObjectArray
 
getValue(int) - Method in class org.scijava.util.ShortArray
 
getValue(String) - Method in class org.scijava.widget.AbstractInputPanel
 
getValue() - Method in class org.scijava.widget.DefaultWidgetModel
 
getValue(String) - Method in interface org.scijava.widget.InputPanel
Returns the value of the given widget's input.
getValue() - Method in interface org.scijava.widget.InputWidget
Gets the current widget value.
getValue() - Method in interface org.scijava.widget.WidgetModel
Gets the current value of the module input.
getValueAt(int, int) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getValueAt(int, int) - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.NullTableModel
 
getValueAt(int, int) - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.TableModel
 
getValueOrDefault(String, T) - Method in class org.scijava.optional.AbstractOptions.AbstractValues
 
getValueOrDefault(String, T) - Method in interface org.scijava.optional.Values
 
getVar(String) - Method in class org.scijava.util.ReflectedUniverse
Returns the value of a variable or field in the universe.
getVersion() - Method in class org.scijava.AbstractGateway
 
getVersion() - Method in interface org.scijava.app.App
Gets the version of the application.
getVersion() - Method in class org.scijava.minimaven.Coordinate
 
getVersion() - Method in class org.scijava.minimaven.MavenProject
 
getVersion() - Method in interface org.scijava.module.ModuleInfo
 
getVersion() - Method in class org.scijava.plugin.PluginInfo
 
getVersion() - Method in class org.scijava.script.ScriptInfo
 
getVersion() - Method in class org.scijava.util.Manifest
 
getVersion() - Method in class org.scijava.util.POM
Gets the POM's version.
getVersion(Class<?>) - Static method in class org.scijava.util.VersionUtils
Looks up the version of the specified class using any means available, appending the build number to any SNAPSHOT version.
getVersion(Class<?>, String, String) - Static method in class org.scijava.util.VersionUtils
Looks up the version of the specified class using any means available, appending the build number to any SNAPSHOT version.
getVersion() - Method in interface org.scijava.Versioned
Gets the version of the object.
getVersionedLibraryName(Class<?>, String) - Static method in class org.scijava.nativelib.NativeLibraryUtil
Returns the Maven-versioned file name of the native library.
getVersionFromManifest(Class<?>) - Static method in class org.scijava.util.VersionUtils
Looks up the version of the specified class using a JAR manifest if available, appending the build number to any SNAPSHOT version.
getVersionFromPOM(Class<?>, String, String) - Static method in class org.scijava.util.VersionUtils
Looks up the version of the specified class using the specified POM, or base POM directory if groupId and artifactId are null.
getViewerPlugins() - Method in class org.scijava.ui.DefaultUIService
 
getViewerPlugins() - Method in interface org.scijava.ui.UIService
Gets the list of known viewer plugins.
getVisibility() - Method in class org.scijava.command.CommandModuleItem
 
getVisibility() - Method in class org.scijava.module.AbstractModuleItem
 
getVisibility() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getVisibility() - Method in interface org.scijava.module.ModuleItem
Gets the visibility of the item.
getVisibleUIs() - Method in class org.scijava.ui.DefaultUIService
 
getVisibleUIs() - Method in interface org.scijava.ui.UIService
Gets the user interfaces that are currently visible.
getWeight() - Method in class org.scijava.MenuEntry
 
getWheelRotation() - Method in class org.scijava.display.event.input.MsWheelEvent
 
getWidget(String) - Method in class org.scijava.widget.AbstractInputPanel
 
getWidget(String) - Method in interface org.scijava.widget.InputPanel
Gets the widget with the provided name.
getWidgetComponentType() - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
getWidgetComponentType() - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
getWidgetComponentType() - Method in interface org.scijava.widget.InputPanel
Gets the type of the UI component housing the panel's widgets.
getWidgetCount() - Method in class org.scijava.widget.AbstractInputPanel
 
getWidgetCount() - Method in interface org.scijava.widget.InputPanel
Gets the number of active widgets in the input panel.
getWidgetLabel() - Method in class org.scijava.widget.DefaultWidgetModel
 
getWidgetLabel() - Method in interface org.scijava.widget.WidgetModel
Gets the text to use when labeling this widget.
getWidgetStyle() - Method in class org.scijava.command.CommandModuleItem
 
getWidgetStyle() - Method in class org.scijava.module.AbstractModuleItem
 
getWidgetStyle() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getWidgetStyle() - Method in interface org.scijava.module.ModuleItem
Gets the preferred widget style to use when rendering the item in a user interface.
getWidth() - Method in class org.scijava.ui.ARGBPlane
 
getWindow() - Method in class org.scijava.display.event.window.WinEvent
Gets the actual UI-specific window.
getWindow() - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer.SwingDisplayPanel
 
getWindow() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel
 
getWindow() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
getWindow() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
getWindow() - Method in interface org.scijava.ui.viewer.DisplayPanel
Gets the window housing this panel.
getWindow() - Method in interface org.scijava.ui.viewer.DisplayViewer
Gets the window in which the view is displayed.
getWorkSpaceBounds() - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
getWriter() - Method in class org.scijava.script.AbstractScriptContext
 
getX() - Method in class org.scijava.display.event.input.InputEvent
 
getX() - Method in class org.scijava.input.DefaultInputService
 
getX() - Method in interface org.scijava.input.InputService
Gets the last observed X coordinate of the mouse cursor, relative to a specific display.
getY() - Method in class org.scijava.display.event.input.InputEvent
 
getY() - Method in class org.scijava.input.DefaultInputService
 
getY() - Method in interface org.scijava.input.InputService
Gets the last observed Y coordinate of the mouse cursor, relative to a specific display.
GHOSTWHITE - Static variable in class org.scijava.util.Colors
 
git(File, File, String...) - Method in class org.scijava.ui.swing.script.FileFunctions
 
git(File, String...) - Method in class org.scijava.ui.swing.script.FileFunctions
 
gitConfig(File, String) - Method in class org.scijava.ui.swing.script.FileFunctions
 
GitGrep - Class in org.scijava.ui.swing.script.commands
Calls git grep in a given directory.
GitGrep() - Constructor for class org.scijava.ui.swing.script.commands.GitGrep
 
gitGrep(String, File) - Method in class org.scijava.ui.swing.script.FileFunctions
 
GlobalKeyEventDispatcher - Class in org.scijava.ui.behaviour
Global KeyEventDispatcher hook that allows to share state of modifier keys between MouseAndKeyHandler in different windows of the application.
GOLD - Static variable in class org.scijava.util.Colors
 
GOLDENROD - Static variable in class org.scijava.util.Colors
 
gotoLine() - Method in class org.scijava.ui.swing.script.TextEditor
 
gotoLine(int) - Method in class org.scijava.ui.swing.script.TextEditor
 
grab(String) - Method in class org.scijava.grab.DefaultGrabService
 
grab(Map<String, Object>) - Method in class org.scijava.grab.DefaultGrabService
 
grab(Map<String, Object>, Map...) - Method in class org.scijava.grab.DefaultGrabService
 
grab(String) - Method in interface org.scijava.grab.GrabService
 
grab(Map<String, Object>) - Method in interface org.scijava.grab.GrabService
 
grab(Map<String, Object>, Map...) - Method in interface org.scijava.grab.GrabService
 
GrabScriptProcessor - Class in org.scijava.grab.script.process
A ScriptProcessor which handles #@dependency and #@repository directives.
GrabScriptProcessor() - Constructor for class org.scijava.grab.script.process.GrabScriptProcessor
 
GrabService - Interface in org.scijava.grab
Interface for services which acquire dependencies at runtime.
GRAY - Static variable in class org.scijava.util.Colors
 
GREATER_THAN - Static variable in class org.scijava.parsington.Operators
 
GREATER_THAN_OR_EQUAL - Static variable in class org.scijava.parsington.Operators
 
greaterThan(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
greaterThan(Comparable<T>, T) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
greaterThan(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.GREATER_THAN operator.
greaterThanOrEqual(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
greaterThanOrEqual(Comparable<T>, T) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
greaterThanOrEqual(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.GREATER_THAN_OR_EQUAL operator.
GREEN - Static variable in class org.scijava.util.Colors
 
GREENYELLOW - Static variable in class org.scijava.util.Colors
 
GrepLineHandler(JTextArea, String) - Constructor for class org.scijava.ui.swing.script.FileFunctions.GrepLineHandler
 
GREY - Static variable in class org.scijava.util.Colors
 
GroovyCompiledScript - Class in org.scijava.plugins.scripting.groovy
Groovy CompiledScript implementation.
GroovyCompiledScript(GroovyScriptEngine, Class<?>) - Constructor for class org.scijava.plugins.scripting.groovy.GroovyCompiledScript
 
GroovyScriptEngine - Class in org.scijava.plugins.scripting.groovy
Groovy ScriptEngine implementation.
GroovyScriptEngine() - Constructor for class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
GroovyScriptLanguage - Class in org.scijava.plugins.scripting.groovy
An adapter of the Groovy interpreter to the SciJava scripting interface.
GroovyScriptLanguage() - Constructor for class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
Group - Class in org.scijava.parsington
A group is a special N-ary operator delineated by a left-hand symbol and a right-hand symbol, with comma-separated arguments.
Group(String, String, double) - Constructor for class org.scijava.parsington.Group
 
groupId - Variable in class org.scijava.minimaven.Coordinate
 
GuavaCacheService - Class in org.scijava.cache
CacheService implementation wrapping a guava Cache.
GuavaCacheService() - Constructor for class org.scijava.cache.GuavaCacheService
 
guessMxSysInfo() - Static method in class org.scijava.nativelib.MxSysInfo
Make a spirited attempt at guessing what the mx.sysinfo for the current jvm might be.
guessParser(boolean) - Method in class org.scijava.table.io.TableIOOptions
 
guessParser() - Method in class org.scijava.table.io.TableIOOptions.Values
 

H

handle(LinkedList<String>) - Method in class org.scijava.command.console.RunArgument
Deprecated.
 
handle(LinkedList<String>) - Method in interface org.scijava.console.ConsoleArgument
Handles the front of the given list of arguments.
handle(LinkedList<String>) - Method in class org.scijava.console.SystemPropertyArgument
 
handle(LinkedList<String>) - Method in class org.scijava.io.console.OpenArgument
 
handle() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
handle(Exception) - Method in class org.scijava.log.DefaultUncaughtExceptionHandler
 
handle(LinkedList<String>) - Method in class org.scijava.main.console.MainArgument
 
handle(LinkedList<String>) - Method in class org.scijava.run.console.RunArgument
 
handle(LinkedList<String>) - Method in class org.scijava.script.console.RunScriptArgument
Deprecated.
 
handle(LinkedList<String>) - Method in class org.scijava.ui.console.HeadlessArgument
 
handle(LinkedList<String>) - Method in class org.scijava.ui.console.ShowUIArgument
 
handle(LinkedList<String>) - Method in class org.scijava.ui.console.UIArgument
 
handle(Throwable) - Method in class org.scijava.ui.swing.script.ExceptionHandler
 
handle(Throwable, TextEditor) - Static method in class org.scijava.ui.swing.script.ExceptionHandler
 
handleAbout(AboutEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
handledType() - Method in class org.scijava.plugins.scripting.jruby.JRubyScriptHeader
 
handledType() - Method in class org.scijava.script.AbstractScriptHeader
 
handleException(Throwable) - Method in class org.scijava.ui.swing.script.TextEditor
 
handleException(Throwable, JTextArea) - Static method in class org.scijava.ui.swing.script.TextEditor
 
handleKeyPressed(KeyPressedManager.KeyPressedReceiver, int, boolean, TIntSet) - Method in class org.scijava.ui.behaviour.KeyPressedManager
 
handleKeyPressed(KeyPressedManager.KeyPressedReceiver, int, boolean, TIntSet) - Method in interface org.scijava.ui.behaviour.KeyPressedManager.KeyPressedReceiver
 
handlePreferences(PreferencesEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
handleQuitRequestWith(QuitEvent, QuitResponse) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
HandlerPlugin<D> - Interface in org.scijava.plugin
Interface for plugins which "handle" a particular subset of data objects.
HandlerService<DT,PT extends HandlerPlugin<DT>> - Interface in org.scijava.plugin
A service for managing HandlerPlugins of a particular type.
handleTabsMenu(Object) - Method in class org.scijava.ui.swing.script.TextEditor
 
handleUnsavedChanges() - Method in class org.scijava.ui.swing.script.TextEditor
 
handleUnsavedChanges(boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
harvest() - Method in class org.scijava.command.Inputs
 
harvest(Module) - Method in interface org.scijava.widget.InputHarvester
Performs the harvesting process.
harvestInputs(InputPanel<Panel, Panel>, Module) - Method in class org.scijava.ui.awt.widget.AWTInputHarvester
 
harvestInputs(InputPanel<JPanel, JPanel>, Module) - Method in class org.scijava.ui.swing.widget.SwingInputHarvester
 
harvestInputs(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester
Gathers input values from the user or other source.
hasClass(String) - Static method in class org.scijava.util.ClassUtils
Deprecated.
Use Types.load(String) instead.
hasClass(String, ClassLoader) - Static method in class org.scijava.util.ClassUtils
Deprecated.
hasFiles(TransferHandler.TransferSupport) - Static method in class org.scijava.ui.swing.widget.SwingFileWidget
Checks whether the given drag and drop operation offers a list of files as one of its flavors.
hash(String) - Static method in class org.scijava.util.DigestUtils
Gets the Java hash code of the given string, as a byte array.
hash(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the hash code of the given byte array, as a byte array.
hashCode() - Method in class org.scijava.input.Accelerator
 
hashCode() - Method in class org.scijava.input.InputModifiers
 
hashCode() - Method in class org.scijava.io.location.AbstractLocation
 
hashCode() - Method in class org.scijava.io.location.BytesLocation
 
hashCode() - Method in class org.scijava.minimaven.MavenProject
 
hashCode() - Method in class org.scijava.parsington.SyntaxTree
 
hashCode() - Method in class org.scijava.ui.behaviour.InputTrigger
 
hashCode() - Method in class org.scijava.ui.behaviour.io.gui.Command
 
hashCode() - Method in class org.scijava.ui.dnd.MIMEType
 
hashCode() - Method in class org.scijava.util.ColorRGB
 
hashCode() - Method in class org.scijava.util.IntCoords
 
hashCode() - Method in class org.scijava.util.IntRect
 
hashCode() - Method in class org.scijava.util.RealCoords
 
hashCode() - Method in class org.scijava.util.RealRect
 
hasLogLevel() - Method in class org.scijava.log.LogSource
 
hasMoreElements() - Method in class org.scijava.util.IteratorPlus
 
hasNext() - Method in class org.scijava.menu.ShadowMenuIterator
 
hasNext() - Method in class org.scijava.util.IteratorPlus
 
hasParam(LinkedList<String>) - Static method in class org.scijava.console.ConsoleUtils
HasPluginInfo - Interface in org.scijava.plugin
A object with associated PluginInfo metadata.
hasProxy() - Static method in class org.scijava.plugins.scripting.matlab.MATLABControlUtils
 
hasWidgets() - Method in class org.scijava.widget.AbstractInputPanel
 
hasWidgets() - Method in interface org.scijava.widget.InputPanel
Gets whether the input panel has any active widgets.
HeadlessArgument - Class in org.scijava.ui.console
Handles the --headless argument to signal that no UI will be opened and the enclosing Context will not be used after the ConsoleService argument processing is complete.
HeadlessArgument() - Constructor for class org.scijava.ui.console.HeadlessArgument
 
HeadlessDisplayViewer - Class in org.scijava.ui.headless
A display viewer used when running headless.
HeadlessDisplayViewer() - Constructor for class org.scijava.ui.headless.HeadlessDisplayViewer
 
HeadlessUI - Class in org.scijava.ui.headless
A no-op user interface used when the application is running headless.
HeadlessUI() - Constructor for class org.scijava.ui.headless.HeadlessUI
 
HeadlessUI - Class in org.scijava.ui.headlessUI
Deprecated.
Use HeadlessUI instead.
HeadlessUI() - Constructor for class org.scijava.ui.headlessUI.HeadlessUI
Deprecated.
 
height - Variable in class org.scijava.util.IntRect
 
height - Variable in class org.scijava.util.RealRect
 
help() - Method in interface org.scijava.plugins.scripting.matlab.MATLABCommands
 
help() - Method in class org.scijava.script.ScriptREPL
Prints a usage guide.
HELP_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
HELP_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
HELP_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
hex(byte[]) - Static method in class org.scijava.util.DigestUtils
Converts the given byte array to a hexidecimal string.
hexNybble(int) - Static method in class org.scijava.minimaven.BuildEnvironment
 
hidePanel(Container) - Method in class org.scijava.ui.swing.search.SwingSearchBar
Called on the EDT when the search panel wants to disappear.
HIGH - Static variable in class org.scijava.Priority
Priority for items that prefer to be sorted earlier.
HIGH_PRIORITY - Static variable in class org.scijava.Priority
Deprecated.
Use Priority.HIGH instead.
hoard - Variable in class org.scijava.object.ObjectIndex
"Them as counts counts moren them as dont count."
—Russell Hoban, Riddley Walker
HONEYDEW - Static variable in class org.scijava.util.Colors
 
HOTPINK - Static variable in class org.scijava.util.Colors
 
HTTPHandle - Class in org.scijava.io.http
HTTPHandle() - Constructor for class org.scijava.io.http.HTTPHandle
 
HTTPLocation - Class in org.scijava.io.http
A Location that can be accessed via HTTP.
HTTPLocation(URI, String, String) - Constructor for class org.scijava.io.http.HTTPLocation
 
HTTPLocation(URI) - Constructor for class org.scijava.io.http.HTTPLocation
Creates an HTTPLocation from an URI.
HTTPLocation(HttpUrl) - Constructor for class org.scijava.io.http.HTTPLocation
Creates an HTTPLocation from an HttpUrl.
HTTPLocation(String, String, String) - Constructor for class org.scijava.io.http.HTTPLocation
 
HTTPLocation(String) - Constructor for class org.scijava.io.http.HTTPLocation
 
HTTPLocationResolver - Class in org.scijava.io.http
 
HTTPLocationResolver() - Constructor for class org.scijava.io.http.HTTPLocationResolver
 
hyperlinkUpdate(HyperlinkEvent) - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 

I

icon() - Method in class org.scijava.AbstractGateway
 
icon() - Method in interface org.scijava.Gateway
Gets this application context's IconService.
ICON_ERROR - Static variable in class org.scijava.ui.swing.script.FileSystemTree
 
IconDrawer - Interface in org.scijava.tool
CustomDrawnTools use IconDrawers to draw their icon on screen.
iconPath() - Method in class org.scijava.search.classes.ClassSearchResult
 
iconPath(ModuleInfo) - Static method in class org.scijava.search.module.ModuleSearcher
Gets the icon path associated with the given module.
iconPath() - Method in class org.scijava.search.module.ModuleSearchResult
 
iconPath() - Method in interface org.scijava.search.SearchResult
 
iconPath() - Method in class org.scijava.search.snippet.SnippetSearchResult
 
iconPath() - Method in class org.scijava.search.template.TemplateSearchResult
 
iconPath() - Method in class org.scijava.search.web.WebSearchResult
 
IconService - Interface in org.scijava.tool
IconService allows a Tool to obtain the IconDrawer.
Identifiable - Interface in org.scijava
An object which can express itself by some unique string.
identifier() - Method in class org.scijava.search.classes.ClassSearchResult
 
identifier() - Method in class org.scijava.search.module.ModuleSearchResult
 
identifier() - Method in interface org.scijava.search.SearchResult
Short name, intended for display in the list of results.
IGNORE_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
IgnoreAsCallingClass - Annotation Type in org.scijava.log
Classes annotated with IgnoreAsCallingClass are ignored by CallingClassUtils.getCallingClassName().
ignoreExtension(String) - Method in class org.scijava.ui.swing.script.FileSystemTree
Add a file name extension to ignore, without the dot, for example "class".
ignoreMavenRepositories - Variable in class org.scijava.minimaven.BuildEnvironment
 
IJ1MacroHighlighter - Class in org.scijava.ui.swing.script.highliters
SyntaxHighliter for ij1-macros.
IJ1MacroHighlighter() - Constructor for class org.scijava.ui.swing.script.highliters.IJ1MacroHighlighter
 
IMAGE_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
IMAGE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
IMAGE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
ImageForumSearcher - Class in org.scijava.search.web
A searcher for the Image.sc Forum.
ImageForumSearcher() - Constructor for class org.scijava.search.web.ImageForumSearcher
 
IMAGEJ_APP_DIRECTORY - Static variable in class org.scijava.minimaven.BuildEnvironment
 
ImageJMacroTokenMaker - Class in org.scijava.ui.swing.script.highliters
TODO
ImageJMacroTokenMaker() - Constructor for class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Constructor.
ImageJMacroTokenMaker(Reader) - Constructor for class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Creates a new scanner There is also a java.io.InputStream version of this constructor.
ImageJMacroTokenMaker(InputStream) - Constructor for class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Creates a new scanner.
ImageJWikiSearcher - Class in org.scijava.search.web
A searcher for finding pages of the ImageJ wiki.
ImageJWikiSearcher() - Constructor for class org.scijava.search.web.ImageJWikiSearcher
 
Import(String, String, int) - Constructor for class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion.Import
 
Import(String, String[], int) - Constructor for class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion.Import
 
importChars - Variable in class org.scijava.ui.swing.script.TokenFunctions
 
ImportCompletion - Interface in org.scijava.ui.swing.script.autocompletion
 
ImportCompletionImpl - Class in org.scijava.ui.swing.script.autocompletion
 
ImportCompletionImpl(CompletionProvider, String, String, String) - Constructor for class org.scijava.ui.swing.script.autocompletion.ImportCompletionImpl
 
ImportFormat - Interface in org.scijava.ui.swing.script.autocompletion
 
importStatement - Variable in class org.scijava.ui.swing.script.autocompletion.ImportCompletionImpl
 
in() - Method in interface org.scijava.io.handle.StreamHandle
Gets an input stream for reading data, positioned at the current offset.
in() - Method in class org.scijava.io.http.HTTPHandle
 
INACTIVE_BORDER - Static variable in class org.scijava.ui.swing.SwingToolBar
 
inc() - Method in class org.scijava.parsington.Position
 
inc(int) - Method in class org.scijava.parsington.Position
 
incArity() - Method in class org.scijava.parsington.Group
 
includeImplementationBuild - Variable in class org.scijava.minimaven.MavenProject
 
increaseFontSize(float) - Method in class org.scijava.ui.swing.script.EditorPane
Increase font size of this editor by a given factor.
index(File) - Method in class org.scijava.annotations.DirectoryIndexer
 
Index<A extends Annotation> - Class in org.scijava.annotations
Makes the annotation indexes accessible.
Indexable - Annotation Type in org.scijava.annotations
Meta annotation for indexable annotations.
IndexItem<A extends Annotation> - Class in org.scijava.annotations
Allows access to individual annotations.
indexOf(Object) - Method in class org.scijava.display.AbstractDisplay
 
indexOf(Object) - Method in interface org.scijava.table.Column
 
indexOf(Object) - Method in interface org.scijava.table.Table
Returns the index of the first occurrence of the specified column in the table, or -1 if the table does not contain the column.
indexOf(boolean[], boolean) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given array.
indexOf(byte[], byte) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given array.
indexOf(char[], char) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given array.
indexOf(double[], double) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given array.
indexOf(float[], float) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given array.
indexOf(int[], int) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given array.
indexOf(long[], long) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given array.
indexOf(short[], short) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given array.
indexOf(Object[], Object) - Static method in class org.scijava.util.ArrayUtils
Returns the index of the first occurrence of the given value in the given Object array.
indexOf(boolean) - Method in class org.scijava.util.BoolArray
 
indexOf(Object) - Method in class org.scijava.util.BoolArray
 
indexOf(byte) - Method in class org.scijava.util.ByteArray
 
indexOf(Object) - Method in class org.scijava.util.ByteArray
 
indexOf(char) - Method in class org.scijava.util.CharArray
 
indexOf(Object) - Method in class org.scijava.util.CharArray
 
indexOf(double) - Method in class org.scijava.util.DoubleArray
 
indexOf(Object) - Method in class org.scijava.util.DoubleArray
 
indexOf(float) - Method in class org.scijava.util.FloatArray
 
indexOf(Object) - Method in class org.scijava.util.FloatArray
 
indexOf(int) - Method in class org.scijava.util.IntArray
 
indexOf(Object) - Method in class org.scijava.util.IntArray
 
indexOf(long) - Method in class org.scijava.util.LongArray
 
indexOf(Object) - Method in class org.scijava.util.LongArray
 
indexOf(Object) - Method in class org.scijava.util.ObjectArray
 
indexOf(short) - Method in class org.scijava.util.ShortArray
 
indexOf(Object) - Method in class org.scijava.util.ShortArray
 
INDIANRED - Static variable in class org.scijava.util.Colors
 
INDIGO - Static variable in class org.scijava.util.Colors
 
info(Object) - Method in interface org.scijava.log.Logger
 
info(Throwable) - Method in interface org.scijava.log.Logger
 
info(Object, Throwable) - Method in interface org.scijava.log.Logger
 
INFO - Static variable in class org.scijava.log.LogLevel
 
INFO - Static variable in interface org.scijava.log.LogService
Deprecated.
info() - Method in class org.scijava.script.process.DirectiveScriptProcessor
Gets the active ScriptInfo instance.
info() - Method in class org.scijava.search.module.ModuleSearchResult
 
init(int, int) - Method in interface org.scijava.ui.behaviour.DragBehaviour
Possibly start the behaviour.
Initializable - Interface in org.scijava
Interface for objects which can be initialized.
initialize() - Method in class org.scijava.cache.DefaultCacheService
 
initialize() - Method in class org.scijava.cache.GuavaCacheService
 
initialize() - Method in class org.scijava.command.DefaultCommandService
 
initialize() - Method in class org.scijava.convert.AbstractConvertService
 
initialize() - Method in class org.scijava.event.DefaultEventService
 
initialize() - Method in interface org.scijava.Initializable
Initializes the object.
initialize() - Method in class org.scijava.io.DefaultRecentFileService
 
initialize() - Method in class org.scijava.log.slf4j.SLF4JLogService
 
initialize() - Method in class org.scijava.module.AbstractModule
 
initialize(Module) - Method in class org.scijava.module.AbstractModuleItem
 
initialize() - Method in class org.scijava.module.DefaultModuleService
 
initialize() - Method in interface org.scijava.module.Module
Initializes the module.
initialize(Module) - Method in interface org.scijava.module.ModuleItem
Invokes this item's initializer function, if any, on the given module.
initialize() - Method in class org.scijava.object.DefaultObjectService
 
initialize() - Method in class org.scijava.platform.DefaultPlatformService
 
initialize() - Method in class org.scijava.plugin.DefaultPluginService
 
initialize() - Method in interface org.scijava.plugin.SingletonService
 
initialize() - Method in interface org.scijava.plugin.WrapperService
 
initialize() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
initialize() - Method in class org.scijava.prefs.AbstractPrefService
 
initialize() - Method in class org.scijava.script.DefaultScriptService
 
initialize() - Method in class org.scijava.script.ScriptREPL
Outputs a greeting, and sets up the initial language and variables of the REPL.
initialize(boolean) - Method in class org.scijava.script.ScriptREPL
Sets up the initial language and variables of the REPL.
initialize() - Method in interface org.scijava.service.Service
Performs any needed initialization when the service is first loaded.
initializeChoice() - Method in class org.scijava.ui.swing.script.commands.ChooseFontSize
 
initializeChoice() - Method in class org.scijava.ui.swing.script.commands.ChooseTabSize
 
initializeChoice() - Method in class org.scijava.ui.swing.script.commands.KillScript
 
initializeCommands() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
initializeCommands() - Method in interface org.scijava.plugins.scripting.matlab.MATLABService
Creates a MATLAB variable for each MATLABCommands plugin using the Plugin.name() property as an identifier.
initInput1() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder
Initializer for input1 parameter.
initInput2() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder
Initializer for input2 parameter.
initInputChoice() - Method in class org.scijava.batch.ModuleBatchProcessor
 
initLookAndFeel() - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
 
initParams() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder
Global initializer.
InitPreprocessor - Class in org.scijava.module.process
A preprocessor plugin that populates initial parameter values.
InitPreprocessor() - Constructor for class org.scijava.module.process.InitPreprocessor
 
inject(Object) - Method in class org.scijava.Context
Injects the application context into the given object.
inject(Object) - Method in class org.scijava.plugin.PluginInfo
Injects the metadata into the given object.
inject(Object, double) - Static method in class org.scijava.Priority
Injects the specified priority into the given object.
input() - Method in class org.scijava.AbstractGateway
 
input() - Method in interface org.scijava.Gateway
Gets this application context's InputService.
InputActionBindings - Class in org.scijava.ui.behaviour.util
Maintains lists of ActionMaps and InputMaps, which are chained to a concatenated InputMap and a concatenated ActionMap.
InputActionBindings() - Constructor for class org.scijava.ui.behaviour.util.InputActionBindings
Create empty leaf InputMap and ActionMap.
InputActionBindings(InputMap) - Constructor for class org.scijava.ui.behaviour.util.InputActionBindings
Create empty leaf ActionMap and set the given leaf InputMap.
InputEvent - Class in org.scijava.display.event.input
An event indicating input device (e.g., keyboard or mouse) activity in a display.
InputEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.InputEvent
 
InputHarvester<P,W> - Interface in org.scijava.widget
An input harvester collects Module input values, according to the following steps: Create an InputPanel with widgets corresponding to the module inputs. Present the panel, if in a UI context. Harvest the final widget values from the panel, updating the Module's input values to match the harvested values. Perform any other needed processing of the results (marking inputs as resolved, storing persisted values to preferences, etc.).
inputList() - Method in class org.scijava.module.AbstractModuleInfo
Gets AbstractModuleInfo.outputMap, initializing if needed.
inputMap() - Method in class org.scijava.module.AbstractModuleInfo
Gets AbstractModuleInfo.inputMap, initializing if needed.
InputModifiers - Class in org.scijava.input
A UI-independent representation of keyboard and mouse modifier states.
InputModifiers(boolean, boolean, boolean, boolean, boolean, boolean, boolean, boolean) - Constructor for class org.scijava.input.InputModifiers
 
InputPanel<P,W> - Interface in org.scijava.widget
Flexible panel-building interface, for use with UIs that prompt for input values of various types.
inputs() - Method in class org.scijava.command.CommandInfo
 
Inputs - Class in org.scijava.command
A way to build a dynamic set of inputs, whose values are then harvested by the preprocessing framework.
Inputs(Context) - Constructor for class org.scijava.command.Inputs
 
inputs() - Method in class org.scijava.module.AbstractModuleInfo
 
inputs() - Method in interface org.scijava.module.ModuleInfo
Gets the list of input items.
InputService - Interface in org.scijava.input
Interface for service that tracks the current status of input devices (keyboard and mouse in particular).
InputTrigger - Class in org.scijava.ui.behaviour
A combination of keys, mouse buttons, and/or mouse scrolling that can trigger a Behaviour.
InputTriggerAdder - Interface in org.scijava.ui.behaviour
 
inputTriggerAdder(InputTriggerMap, String...) - Method in interface org.scijava.ui.behaviour.InputTriggerAdder.Factory
 
inputTriggerAdder(InputTriggerMap, String...) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
inputTriggerAdder - Variable in class org.scijava.ui.behaviour.util.Behaviours
 
InputTriggerAdder.Factory - Interface in org.scijava.ui.behaviour
 
InputTriggerAdderImp(InputTriggerMap, InputTriggerConfig, Set<String>) - Constructor for class org.scijava.ui.behaviour.io.InputTriggerConfig.InputTriggerAdderImp
 
InputTriggerAdderImp(InputTriggerMap, InputTriggerConfig, String...) - Constructor for class org.scijava.ui.behaviour.io.InputTriggerConfig.InputTriggerAdderImp
 
inputTriggerChanged() - Method in interface org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor.InputTriggerChangeListener
 
InputTriggerConfig - Class in org.scijava.ui.behaviour.io
 
InputTriggerConfig() - Constructor for class org.scijava.ui.behaviour.io.InputTriggerConfig
 
InputTriggerConfig(Collection<InputTriggerDescription>) - Constructor for class org.scijava.ui.behaviour.io.InputTriggerConfig
 
InputTriggerConfig.InputTriggerAdderImp - Class in org.scijava.ui.behaviour.io
 
InputTriggerConfig.KeyStrokeAdderImp - Class in org.scijava.ui.behaviour.io
 
InputTriggerDescription - Class in org.scijava.ui.behaviour.io
IO record describing the mapping of one InputTrigger to an Action or a Behaviour.
InputTriggerDescription(String[], String, String...) - Constructor for class org.scijava.ui.behaviour.io.InputTriggerDescription
 
InputTriggerDescription() - Constructor for class org.scijava.ui.behaviour.io.InputTriggerDescription
 
InputTriggerDescriptionsBuilder - Class in org.scijava.ui.behaviour.io
Creates InputTriggerDescriptions from existing InputMaps and InputTriggerMaps.
InputTriggerDescriptionsBuilder() - Constructor for class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder
 
InputTriggerDescriptionsBuilder(InputTriggerConfig) - Constructor for class org.scijava.ui.behaviour.io.InputTriggerDescriptionsBuilder
 
InputTriggerMap - Class in org.scijava.ui.behaviour
Similar to InputMap, this provides bindings from InputTrigger to Behaviour keys, and is chainable (see InputTriggerMap.setParent(InputTriggerMap)).
InputTriggerMap() - Constructor for class org.scijava.ui.behaviour.InputTriggerMap
Creates an InputTriggerMap with no parent and no mappings.
InputTriggerPanelEditor - Class in org.scijava.ui.behaviour.io.gui
 
InputTriggerPanelEditor(boolean) - Constructor for class org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor
 
InputTriggerPanelEditor.InputTriggerChangeListener - Interface in org.scijava.ui.behaviour.io.gui
 
InputWidget<T,W> - Interface in org.scijava.widget
Interface for input widgets.
insert(int, int) - Method in class org.scijava.util.AbstractPrimitiveArray
Shifts the array to insert space at a specified index.
insert(int, int) - Method in interface org.scijava.util.PrimitiveArray
Shifts the array to insert space at a specified index.
insertColumn(int) - Method in interface org.scijava.table.Table
Inserts a column (with no header) at the given position in the table.
insertColumn(int, String) - Method in interface org.scijava.table.Table
Inserts a column with the specified header at the given position in the table.
insertColumns(int, int) - Method in class org.scijava.table.AbstractTable
 
insertColumns(int, int) - Method in interface org.scijava.table.Table
Inserts a block of columns (with no headers) at the given position in the table.
insertColumns(int, String...) - Method in interface org.scijava.table.Table
Inserts a block of columns with the specified headers at the given position in the table.
insertCompletion(Completion, boolean) - Method in class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion
 
insertRow(int) - Method in interface org.scijava.table.Table
Inserts a row (with no header) at the given position in the table.
insertRow(int, String) - Method in interface org.scijava.table.Table
Inserts a row with the specified header at the given position in the table.
insertRows(int, int) - Method in interface org.scijava.table.Table
Inserts a block of rows (with no headers) at the given position in the table.
insertRows(int, String...) - Method in interface org.scijava.table.Table
Inserts a block of rows with the specified headers at the given position in the table.
insertString(DocumentFilter.FilterBypass, int, String, AttributeSet) - Method in class org.scijava.ui.swing.widget.DocumentSizeFilter
 
insertUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
insertUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.EditorPane
 
insertUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
insertUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.FileFunctions.TextWrapper
 
insertUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.TextEditor
 
insertUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
insertUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
InspectObjects - Class in org.scijava.ui.swing.commands
Inspect the ObjectService
InspectObjects() - Constructor for class org.scijava.ui.swing.commands.InspectObjects
 
install(LogService) - Static method in class org.scijava.log.DefaultUncaughtExceptionHandler
 
install(InputActionBindings, String) - Method in class org.scijava.ui.behaviour.util.Actions
Adds the InputMap and ActionMap to inputActionBindings under the given name.
install(TriggerBehaviourBindings, String) - Method in class org.scijava.ui.behaviour.util.Behaviours
Adds the InputTriggerMap and BehaviourMap to triggerBehaviourBindings under the given name.
install(RSyntaxTextArea) - Method in class org.scijava.ui.swing.script.languagesupport.JythonLanguageSupportPlugin
 
installNewBindings(JComponent, int, boolean) - Static method in class org.scijava.ui.behaviour.util.InputActionBindings
Creates a new InputActionBindings and installs it into component, either augmenting or replacing components existing InputMap and ActionMap.
instance() - Method in class org.scijava.parsington.Group
Creates an instance of a group operator, using this one as a template.
instance() - Method in class org.scijava.parsington.Operator
 
instanceOf(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
instanceOf(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.INSTANCEOF operator.
INSTANCEOF - Static variable in class org.scijava.parsington.Operators
 
instances - Static variable in class org.scijava.ui.swing.script.TextEditor
 
Instantiable<T> - Interface in org.scijava
An interface declaring the ability to create objects.
InstantiableException - Exception in org.scijava
An exception thrown when an Instantiable cannot create an object.
InstantiableException() - Constructor for exception org.scijava.InstantiableException
 
InstantiableException(String) - Constructor for exception org.scijava.InstantiableException
 
InstantiableException(String, Throwable) - Constructor for exception org.scijava.InstantiableException
 
InstantiableException(Throwable) - Constructor for exception org.scijava.InstantiableException
 
IntArray - Class in org.scijava.util
An extensible array of int elements.
IntArray() - Constructor for class org.scijava.util.IntArray
Constructs an extensible array of ints, backed by a fixed-size array.
IntArray(int) - Constructor for class org.scijava.util.IntArray
Constructs an extensible array of ints, backed by a fixed-size array.
IntArray(int[]) - Constructor for class org.scijava.util.IntArray
Constructs an extensible array of ints, backed by the given fixed-size array.
IntArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.IntArrayUnwrapper
 
IntArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.IntArrayWrapper
 
IntColumn - Class in org.scijava.table
Efficient implementation of Column for int primitives.
IntColumn() - Constructor for class org.scijava.table.IntColumn
 
IntColumn(String) - Constructor for class org.scijava.table.IntColumn
 
IntCoords - Class in org.scijava.util
This class represents an (X, Y) coordinate pair in integer coordinates.
IntCoords(int, int) - Constructor for class org.scijava.util.IntCoords
 
IntegerToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.IntegerToBigDecimalConverter
 
IntegerToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.IntegerToBigIntegerConverter
 
IntegerToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.IntegerToDoubleConverter
 
IntegerToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.IntegerToLongConverter
 
Interactive - Interface in org.scijava.command
An operation (usually a Command) which is intended to be run interactively.
InteractiveCommand - Class in org.scijava.command
A command intended to be run interactively.
InteractiveCommand(String...) - Constructor for class org.scijava.command.InteractiveCommand
Creates a new interactive command.
internalFrameActivated(InternalFrameEvent) - Method in class org.scijava.ui.swing.mdi.InternalFrameEventDispatcher
 
internalFrameClosed(InternalFrameEvent) - Method in class org.scijava.ui.swing.mdi.InternalFrameEventDispatcher
 
internalFrameClosing(InternalFrameEvent) - Method in class org.scijava.ui.swing.mdi.InternalFrameEventDispatcher
 
internalFrameDeactivated(InternalFrameEvent) - Method in class org.scijava.ui.swing.mdi.InternalFrameEventDispatcher
 
internalFrameDeiconified(InternalFrameEvent) - Method in class org.scijava.ui.swing.mdi.InternalFrameEventDispatcher
 
InternalFrameEventDispatcher - Class in org.scijava.ui.swing.mdi
Rebroadcasts AWT internal frame events as SciJavaEvents.
InternalFrameEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.swing.mdi.InternalFrameEventDispatcher
Creates an AWT event dispatcher for the given display.
internalFrameIconified(InternalFrameEvent) - Method in class org.scijava.ui.swing.mdi.InternalFrameEventDispatcher
 
internalFrameOpened(InternalFrameEvent) - Method in class org.scijava.ui.swing.mdi.InternalFrameEventDispatcher
 
interpret(String) - Method in class org.scijava.script.DefaultScriptInterpreter
Interprets the given line of code, which might be part of a multi-line statement.
interpret(String) - Method in interface org.scijava.script.ScriptInterpreter
Interprets the given line of code, which might be part of a multi-line statement.
interpreter - Variable in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
interpreter - Variable in class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
InterpreterPane - Class in org.scijava.ui.swing.script
A Swing UI pane for the SciJava scripting REPL.
InterpreterPane(Context) - Constructor for class org.scijava.ui.swing.script.InterpreterPane
Constructs an interpreter UI pane for a SciJava scripting REPL.
InterpreterWindow - Class in org.scijava.ui.swing.script
The main interpreter window.
InterpreterWindow(Context) - Constructor for class org.scijava.ui.swing.script.InterpreterWindow
Constructs the scripting interpreter window.
interrupt() - Method in class org.scijava.util.ReadInto
 
intersection(IntRect) - Method in class org.scijava.util.IntRect
Returns a Rect representing the intersection of this Rect with the given Rect.
intersection(RealRect) - Method in class org.scijava.util.RealRect
Returns a Rect representing the intersection of this Rect with the given Rect.
intersects(IntRect) - Method in class org.scijava.util.IntRect
Returns true if this rect intersects the given rect.
intersects(RealRect) - Method in class org.scijava.util.RealRect
Returns true if this rect intersects the given rect.
IntRect - Class in org.scijava.util
A class for representing a rectangular region, in integer coordinates.
IntRect() - Constructor for class org.scijava.util.IntRect
 
IntRect(int, int, int, int) - Constructor for class org.scijava.util.IntRect
 
IntTable - Interface in org.scijava.table
A table of int-precision integer values.
InvocationObject - Class in org.scijava.script
Deprecated.
To be removed in SciJava Common 3.0.0.
InvocationObject(String) - Constructor for class org.scijava.script.InvocationObject
Deprecated.
 
invoke(ScriptModule) - Method in interface org.scijava.script.process.ScriptCallback
Invokes the callback routine.
invoke(Runnable) - Method in class org.scijava.thread.DefaultThreadService
 
invoke(Runnable) - Method in interface org.scijava.thread.ThreadService
Executes the given code in a special dispatch thread, blocking until execution is complete.
invokeFunction(String, Object...) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
invokeMethod(Object, String, Object...) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
invokeStatementBegin() - Method in interface org.scijava.script.CodeGenerator
Deprecated.
 
invokeStatementBegin() - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
invokeStatementEnd() - Method in interface org.scijava.script.CodeGenerator
Deprecated.
 
invokeStatementEnd() - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
io() - Method in class org.scijava.AbstractGateway
 
io() - Method in interface org.scijava.Gateway
Gets this application context's IOService.
IOEvent - Class in org.scijava.io.event
An event indicating that I/O (e.g., opening or saving) has occurred.
IOEvent(String, Object) - Constructor for class org.scijava.io.event.IOEvent
Deprecated.
IOEvent(Location, Object) - Constructor for class org.scijava.io.event.IOEvent
 
IOPlugin<D> - Interface in org.scijava.io
A plugin which extends an application's I/O capabilities.
ioService() - Method in class org.scijava.io.AbstractTypedIOService
 
IOService - Interface in org.scijava.io
Interface for high-level data I/O: opening and saving data.
is(String) - Method in class org.scijava.AbstractBasicDetails
 
is(String) - Method in interface org.scijava.BasicDetails
Returns true iff the given key is defined.
is(String) - Method in class org.scijava.command.CommandModuleItem
 
is(String, String) - Method in class org.scijava.script.process.DirectiveScriptProcessor
Checks whether some key matches the desired value, ignoring case.
isAccepted() - Method in class org.scijava.ui.dnd.event.DragEnterEvent
Gets whether the drag operation is valid.
isAccessibilityIgnored() - Method in class org.scijava.util.ReflectedUniverse
Gets whether access modifiers (protected, private, etc.) are ignored.
isActivated() - Method in class org.scijava.platform.event.AppUserSessionEvent
 
isActive() - Method in class org.scijava.event.DefaultEventHistory
 
isActive() - Method in interface org.scijava.event.EventHistory
Gets whether event history tracking is currently active.
isActiveInAppFrame() - Method in interface org.scijava.tool.Tool
When true, tool receives events when the main application frame is active.
isAggregatorPOM(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
isAggregatorPOM(InputStream) - Method in class org.scijava.minimaven.BuildEnvironment
 
isAltDown() - Method in class org.scijava.input.DefaultInputService
 
isAltDown() - Method in class org.scijava.input.InputModifiers
 
isAltDown() - Method in interface org.scijava.input.InputService
 
isAltGrDown() - Method in class org.scijava.input.DefaultInputService
 
isAltGrDown() - Method in class org.scijava.input.InputModifiers
 
isAltGrDown() - Method in interface org.scijava.input.InputService
 
isAlwaysActive() - Method in interface org.scijava.tool.Tool
When true, tool has no button but rather is active all the time.
isAssignable(Type, Type) - Static method in class org.scijava.util.Types
Discerns whether it would be legal to assign a reference of type source to a reference of type target.
isAutoFill() - Method in class org.scijava.command.CommandModuleItem
 
isAutoFill() - Method in class org.scijava.module.AbstractModuleItem
 
isAutoFill() - Method in class org.scijava.module.DefaultMutableModuleItem
 
isAutoFill() - Method in interface org.scijava.module.ModuleItem
Gets whether the item value is allowed to be auto-filled.
isBackground() - Method in class org.scijava.platform.event.AppFocusEvent
 
isBigEndian() - Method in interface org.scijava.io.handle.DataHandle
Returns true iff the stream's order is DataHandle.ByteOrder.BIG_ENDIAN.
isBinary(File) - Static method in class org.scijava.ui.swing.script.TextEditor
 
isBinaryFile(String) - Method in class org.scijava.ui.swing.script.FileFunctions
 
isBoolean(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isBoolean(Class<?>) - Static method in class org.scijava.util.Types
 
isBoolean() - Method in class org.scijava.widget.DefaultWidgetModel
 
isBoolean() - Method in interface org.scijava.widget.WidgetModel
Gets whether the input is a boolean type (i.e., Boolean or boolean).
isButtonDown(int) - Method in class org.scijava.input.DefaultInputService
 
isButtonDown(int) - Method in interface org.scijava.input.InputService
Gets whether the given mouse button is currently pressed.
isByte(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isByte(Class<?>) - Static method in class org.scijava.util.Types
 
isCacheReady() - Static method in class org.scijava.ui.swing.script.autocompletion.ClassUtil
 
isCanceled() - Method in interface org.scijava.Cancelable
Gets whether the operation has been canceled.
isCanceled() - Method in class org.scijava.command.CommandModule
 
isCanceled() - Method in class org.scijava.command.ContextCommand
 
isCanceled() - Method in class org.scijava.command.DynamicCommand
 
isCanceled() - Method in class org.scijava.command.ModuleCommand
 
isCanceled() - Method in class org.scijava.module.process.AbstractPreprocessorPlugin
 
isCanceled() - Method in class org.scijava.task.DefaultTask
 
isCanceled() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
 
isCellEditable(EventObject) - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
isCharacter(Object, Character) - Static method in class org.scijava.parsington.Tokens
 
isCharacter(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isCharacter(Class<?>) - Static method in class org.scijava.util.Types
 
isCharacter() - Method in class org.scijava.widget.DefaultWidgetModel
 
isCharacter() - Method in interface org.scijava.widget.WidgetModel
Gets whether the input is a character type (i.e., Character or char).
isCheckBox() - Method in class org.scijava.menu.ShadowMenu
Returns true if this node is a checkbox.
isChecked() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
isClass(Token) - Static method in class org.scijava.ui.swing.script.TokenFunctions
 
isClassObsolete(String) - Method in interface org.scijava.annotations.AbstractIndexWriter.StreamFactory
 
isClosed - Variable in class org.scijava.display.AbstractDisplay
 
isComma(Object) - Static method in class org.scijava.parsington.Tokens
 
isCompatible(MIMEType) - Method in class org.scijava.ui.dnd.MIMEType
Gets whether this MIME type is compatible with the given one.
isCompatible(Class<?>) - Method in class org.scijava.ui.dnd.MIMEType
Gets whether this MIME type represents objects of the given Java class.
isCompatible(UserInterface) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer
 
isCompatible(UserInterface) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
isCompatible(UserInterface) - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayViewer
 
isCompatible(UserInterface) - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayViewer
 
isCompatible(UserInterface) - Method in interface org.scijava.ui.viewer.DisplayViewer
Returns true if this display viewer can be used with the given UI.
isCompiledLanguage() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
isCompiledLanguage() - Method in interface org.scijava.script.ScriptLanguage
True iff this language requires a compilation step.
isConsumed() - Method in class org.scijava.event.SciJavaEvent
 
isContextual() - Method in class org.scijava.console.OutputEvent
Returns true if the output was produced outside of a specific SciJava Context.
isCtrlDown() - Method in class org.scijava.input.DefaultInputService
 
isCtrlDown() - Method in class org.scijava.input.InputModifiers
 
isCtrlDown() - Method in interface org.scijava.input.InputService
 
isCtrlReplacedWithMeta() - Static method in class org.scijava.input.Accelerator
 
isDataFlavorSupported(DataFlavor) - Method in class org.scijava.ui.awt.AWTClipboard
 
isDebug() - Method in interface org.scijava.log.Logger
 
isDefaultUI(String) - Method in class org.scijava.ui.DefaultUIService
 
isDefaultUI(String) - Method in interface org.scijava.ui.UIService
Gets whether the UI with the given name (or class name) is the default one.
isDirectory() - Method in interface org.scijava.io.location.BrowsableLocation
Tests whether this location is a directory, meaning that it can have children.
isDirectory() - Method in class org.scijava.io.location.FileLocation
 
isDirectory() - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
isDispatchThread() - Method in class org.scijava.thread.DefaultThreadService
 
isDispatchThread() - Method in interface org.scijava.thread.ThreadService
Gets whether the current thread is a dispatch thread for use with ThreadService.invoke(Runnable) and ThreadService.queue(Runnable).
isDisplaying(Object) - Method in interface org.scijava.display.Display
Tests whether the display is currently visualizing the given object.
isDisplaying(Object) - Method in class org.scijava.table.DefaultTableDisplay
 
isDone() - Method in class org.scijava.task.DefaultTask
 
isDone() - Method in interface org.scijava.task.Task
Checks whether the task has completed.
isDot(Token) - Static method in class org.scijava.ui.swing.script.TokenFunctions
 
isDouble(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isDouble(Class<?>) - Static method in class org.scijava.util.Types
 
isEmpty() - Method in class org.scijava.display.AbstractDisplay
 
isEmpty() - Method in class org.scijava.menu.ShadowMenu
 
isEmpty() - Method in class org.scijava.object.ObjectIndex
 
isEmpty() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
isEmpty() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
isEmpty() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
isEmpty() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
isEmpty() - Method in interface org.scijava.table.Column
 
isEmpty() - Method in interface org.scijava.table.Table
Gets whether the table is empty.
isEmpty() - Method in class org.scijava.util.LastRecentlyUsed
 
isEnabled() - Method in class org.scijava.AbstractUIDetails
 
isEnabled() - Method in class org.scijava.command.DynamicCommandInfo
 
isEnabled() - Method in interface org.scijava.UIDetails
Gets whether the object should be enabled in the user interface.
isError() - Method in interface org.scijava.log.Logger
 
isExpectingMoreInput() - Method in class org.scijava.script.DefaultScriptInterpreter
 
isExpectingMoreInput() - Method in interface org.scijava.script.ScriptInterpreter
 
isFileLocationCachingEnabled() - Method in class org.scijava.download.DiskLocationCache
 
isFirstRun() - Method in class org.scijava.welcome.DefaultWelcomeService
 
isFirstRun() - Method in interface org.scijava.welcome.WelcomeService
Returns true iff this version of the running SJC application has not run before.
isFlag(LinkedList<String>) - Method in class org.scijava.console.AbstractConsoleArgument
Check if the given list of arguments starts with a flag that matches this ConsoleArgument.
isFloat(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isFloat(Class<?>) - Static method in class org.scijava.util.Types
 
isForeground() - Method in class org.scijava.platform.event.AppFocusEvent
 
isGraalJS() - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
Returns true iff this script language is using the Graal.js scripting engine.
isGrabEnabled() - Method in class org.scijava.grab.DefaultGrabService
 
isGrabEnabled() - Method in interface org.scijava.grab.GrabService
This is a static access kill-switch.
isGroup(Object) - Static method in class org.scijava.parsington.Tokens
 
isHeadless() - Method in class org.scijava.ui.DefaultUIService
 
isHeadless() - Method in interface org.scijava.ui.UIService
Gets whether the UI is running in headless mode (no UI).
isHidden() - Method in class org.scijava.platform.event.AppVisibleEvent
 
isHidden() - Method in class org.scijava.plugins.scripting.matlab.MATLABOptions
 
isIdentifier(Token) - Static method in class org.scijava.ui.swing.script.TokenFunctions
 
isInfix() - Method in class org.scijava.parsington.Group
 
isInfix() - Method in class org.scijava.parsington.Operator
True iff the operator is an infix operator (e.g., a-b).
isInfo() - Method in interface org.scijava.log.Logger
 
isInitialized() - Method in class org.scijava.widget.DefaultWidgetModel
 
isInitialized() - Method in interface org.scijava.widget.WidgetModel
Gets the widget's initialization state.
isInjectable(Class<?>) - Method in class org.scijava.Context
Reports whether a parameter of the given type would be assigned a value as a consequence of calling Context.inject(Object).
isInput() - Method in class org.scijava.module.AbstractModuleItem
 
isInput() - Method in interface org.scijava.module.ModuleItem
Gets whether the item is a module input.
isInputResolved(String) - Method in class org.scijava.module.AbstractModule
 
isInputResolved(String) - Method in interface org.scijava.module.Module
Gets the resolution status of the input with the given name.
isInstance(Class<?>, Object) - Static method in class org.scijava.util.ReflectedUniverse
Returns whether the given object is compatible with the specified class for the purposes of reflection.
isInstance(Object, Class<?>) - Static method in class org.scijava.util.Types
Checks whether the given object can be cast to the specified type.
isInteger(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isInteger(Class<?>) - Static method in class org.scijava.util.Types
 
isInteractive() - Method in class org.scijava.command.CommandInfo
 
isInteractive() - Method in class org.scijava.command.DynamicCommandInfo
 
isInteractive() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module is intended to be run interactively.
isInteractiveConsole() - Static method in class org.scijava.minimaven.BuildEnvironment
 
isJAR() - Method in class org.scijava.minimaven.MavenProject
True iff artifact is a JAR file (i.e., MavenProject.getPackaging() is "jar" or "bundle").
isKeyDown(KeyCode) - Method in class org.scijava.input.DefaultInputService
 
isKeyDown(KeyCode) - Method in interface org.scijava.input.InputService
 
isKeyStroke() - Method in class org.scijava.ui.behaviour.InputTrigger
 
isKeyTriggered() - Method in class org.scijava.ui.behaviour.InputTrigger
 
isLabeled() - Method in class org.scijava.ui.awt.widget.AWTButtonWidget
 
isLabeled() - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
isLabeled() - Method in class org.scijava.ui.swing.widget.SwingButtonWidget
 
isLabeled() - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
isLabeled() - Method in interface org.scijava.widget.InputWidget
Returns true iff the widget should be labeled with the parameter label.
isLeaf() - Method in class org.scijava.menu.ShadowMenu
Returns true if this node has no children.
isLeaf() - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
isLeftAssociative() - Method in class org.scijava.parsington.Operator
 
isLeftButtonDown() - Method in class org.scijava.input.InputModifiers
 
isLevel(int) - Method in interface org.scijava.log.Logger
 
isLinux() - Static method in class org.scijava.util.PlatformUtils
Whether the operating system is Linux-based.
isList() - Method in interface org.scijava.parse.Items
Returns true iff there are no named key/value pairs among the items.
isLittleEndian() - Method in interface org.scijava.io.handle.DataHandle
Returns true iff the stream's order is DataHandle.ByteOrder.LITTLE_ENDIAN.
isLong(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isLong(Class<?>) - Static method in class org.scijava.util.Types
 
isMac() - Static method in class org.scijava.util.PlatformUtils
Whether the operating system is Mac-based.
isMap() - Method in interface org.scijava.parse.Items
Returns true iff all items are named key/value pairs.
isMatchingGroup(Object, Group) - Static method in class org.scijava.parsington.Tokens
 
isMessage() - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
isMessage() - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
isMessage() - Method in class org.scijava.widget.DefaultWidgetModel
 
isMessage() - Method in interface org.scijava.widget.InputWidget
Returns true iff the widget should be considered a read-only "message" rather than a bidirectional input widget.
isMessage() - Method in interface org.scijava.widget.WidgetModel
Gets whether the input is a message.
isMessageOnly() - Method in class org.scijava.widget.AbstractInputPanel
 
isMessageOnly() - Method in interface org.scijava.widget.InputPanel
Returns true if the input panel consists of only messages.
isMetaDown() - Method in class org.scijava.input.DefaultInputService
 
isMetaDown() - Method in class org.scijava.input.InputModifiers
 
isMetaDown() - Method in interface org.scijava.input.InputService
 
isMiddleButtonDown() - Method in class org.scijava.input.InputModifiers
 
isModal() - Method in class org.scijava.ui.swing.SwingDialog
Gets whether the dialog is modal.
isMouseoverEnabled() - Method in class org.scijava.ui.swing.search.SwingSearchBar
Gets whether the selection should change upon mouseover.
isMultipleChoice() - Method in class org.scijava.widget.DefaultWidgetModel
 
isMultipleChoice() - Method in interface org.scijava.widget.WidgetModel
Gets whether the input provides a restricted set of choices.
isMultithreaded() - Method in class org.scijava.plugins.scripting.matlab.MATLABOptions
 
isNashorn() - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
Returns true iff this script language is using the Nashorn JavaScript engine.
isNew() - Method in class org.scijava.ui.swing.script.EditorPane
 
isNullOrEmpty(String) - Static method in class org.scijava.util.StringUtils
 
isNumber(Object) - Static method in class org.scijava.parsington.Tokens
 
isNumber(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isNumber(Class<?>) - Static method in class org.scijava.util.Types
 
isNumber() - Method in class org.scijava.widget.DefaultWidgetModel
 
isNumber() - Method in interface org.scijava.widget.WidgetModel
Gets whether the input is a number type (e.g., int, float or any Number implementation.
isOpenJDK() - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
Returns true iff the JVM appears to be the OpenJDK version of Java.
isOperator(Object) - Static method in class org.scijava.parsington.Tokens
 
isOutput() - Method in class org.scijava.module.AbstractModuleItem
 
isOutput() - Method in interface org.scijava.module.ModuleItem
Gets whether the item is a module output.
isOutputResolved(String) - Method in class org.scijava.module.AbstractModule
 
isOutputResolved(String) - Method in interface org.scijava.module.Module
Gets the resolution status of the output with the given name.
isPersisted() - Method in class org.scijava.command.CommandModuleItem
 
isPersisted() - Method in class org.scijava.module.AbstractModuleItem
 
isPersisted() - Method in class org.scijava.module.DefaultMutableModuleItem
 
isPersisted() - Method in interface org.scijava.module.ModuleItem
Gets whether to remember the most recent value of the parameter.
isPopupTrigger() - Method in class org.scijava.display.event.input.MsButtonEvent
 
isPOSIX() - Static method in class org.scijava.util.PlatformUtils
Whether the operating system is POSIX compliant.
isPostfix() - Method in class org.scijava.parsington.Operator
True iff the operator is a postfix operator (e.g., a').
isPrefix() - Method in class org.scijava.parsington.Group
 
isPrefix() - Method in class org.scijava.parsington.Operator
True iff the operator is a prefix operator (e.g., -a).
isRadioButton() - Method in class org.scijava.menu.ShadowMenu
Returns true if this node is a radio button.
isReadable() - Method in class org.scijava.download.MultiWriteHandle
 
isReadable() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
isReadable() - Method in class org.scijava.io.handle.BytesHandle
 
isReadable() - Method in interface org.scijava.io.handle.DataHandle
Gets whether reading from this handle is supported.
isReadable() - Method in class org.scijava.io.handle.DummyHandle
 
isReadable() - Method in class org.scijava.io.handle.FileHandle
 
isReadable() - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
isReadable() - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
isReadable() - Method in class org.scijava.io.http.HTTPHandle
 
isReadOnly() - Method in interface org.scijava.io.ByteBank
 
isReadOnly() - Method in class org.scijava.io.nio.ByteBufferByteBank
 
isReady() - Method in class org.scijava.script.DefaultScriptInterpreter
 
isReady() - Method in interface org.scijava.script.ScriptInterpreter
 
isRecordCallingClass() - Method in class org.scijava.ui.swing.console.LogRecorder
 
isReplace() - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
isRequired() - Method in class org.scijava.command.CommandModuleItem
 
isRequired() - Method in class org.scijava.module.AbstractModuleItem
 
isRequired() - Method in class org.scijava.module.DefaultMutableModuleItem
 
isRequired() - Method in interface org.scijava.module.ModuleItem
Gets whether the item value must be specified (i.e., no default).
isResizable() - Method in class org.scijava.ui.swing.SwingDialog
Gets whether the dialog is resizable by the user.
isResolved(String) - Method in interface org.scijava.module.Module
Deprecated.
isReturnValueAppended() - Method in class org.scijava.script.ScriptInfo
Gets whether the return value is appended as an additional output.
isReturnValueDeclared() - Method in class org.scijava.script.ScriptInfo
Deprecated.
isRhino() - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
Returns true iff this script language is using the Rhino JavaScript engine.
isRightAssociative() - Method in class org.scijava.parsington.Operator
 
isRightButtonDown() - Method in class org.scijava.input.InputModifiers
 
isRoot() - Method in class org.scijava.log.LogSource
 
isScrolledToBottom(JScrollPane) - Static method in class org.scijava.ui.swing.StaticSwingUtils
Checks whether the given JScrollPane is currently scrolled to the bottom of its view.
isSelectable() - Method in class org.scijava.AbstractUIDetails
 
isSelectable() - Method in class org.scijava.command.DynamicCommandInfo
 
isSelectable() - Method in interface org.scijava.UIDetails
Gets whether the object can be selected (e.g., checking and unchecking its menu item) in the user interface.
isSelected() - Method in class org.scijava.AbstractUIDetails
 
isSelected() - Method in class org.scijava.command.DynamicCommandInfo
 
isSelected() - Method in interface org.scijava.UIDetails
Gets whether the object is selected (e.g., its menu item is checked) in the user interface.
isSeparatorNeeded(Tool, Tool) - Method in interface org.scijava.tool.ToolService
Returns true if the two specified tools should have a separator between them on the tool bar.
isShiftDown() - Method in class org.scijava.input.DefaultInputService
 
isShiftDown() - Method in class org.scijava.input.InputModifiers
 
isShiftDown() - Method in interface org.scijava.input.InputService
 
isShort(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isShort(Class<?>) - Static method in class org.scijava.util.Types
 
isSizeLimited() - Method in class org.scijava.ui.swing.SwingDialog
Gets whether the dialog's size is limited by the screen size.
isSleeping() - Method in class org.scijava.platform.event.AppSleepEvent
 
isSnapshotVersion(String) - Static method in class org.scijava.minimaven.BuildEnvironment
 
isStderr() - Method in class org.scijava.console.OutputEvent
Returns true of the source of the output is stderr.
isStdout() - Method in class org.scijava.console.OutputEvent
Returns true of the source of the output is stdout.
isStrict() - Method in class org.scijava.Context
 
isStrict() - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
isStrict() - Method in interface org.scijava.parsington.eval.Evaluator
Gets whether the evaluator is operating in strict mode.
isStyle(String) - Method in class org.scijava.widget.DefaultWidgetModel
 
isStyle(String) - Method in interface org.scijava.widget.WidgetModel
Gets whether the widget is the given style.
isStyle(String, String) - Static method in class org.scijava.widget.WidgetStyle
Check whether a given widget style contains the target style.
isStyle(ModuleItem<?>, String) - Static method in class org.scijava.widget.WidgetStyle
Check whether a given ModuleItem has the target style.
isSuccessful() - Method in class org.scijava.ui.dnd.event.DropEvent
Gets whether the drop operation was successful.
isSupported(MIMEType) - Method in class org.scijava.ui.awt.AWTDragAndDropData
 
isSupported(MIMEType) - Method in class org.scijava.ui.dnd.DefaultDragAndDropData
 
isSupported(MIMEType) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets whether the data can be provided as an object with the given MIME type.
isSupported(Class<?>) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets whether the data can be provided as an object of the given Java class.
isTarget() - Method in interface org.scijava.platform.Platform
Determines whether the given platform is applicable to this runtime.
isText(Class<?>) - Static method in class org.scijava.util.ClassUtils
Deprecated.
isText(Class<?>) - Static method in class org.scijava.util.Types
 
isText() - Method in class org.scijava.widget.DefaultWidgetModel
 
isText() - Method in interface org.scijava.widget.WidgetModel
Gets whether the input is a text type (i.e., String, Character or char.
isTimestampVersion(String) - Static method in class org.scijava.minimaven.BuildEnvironment
 
isToggle() - Method in class org.scijava.menu.ShadowMenu
Returns true if this node is selectable (checkbox or radio button).
isTrace() - Method in interface org.scijava.log.Logger
 
isType(Class<?>) - Method in class org.scijava.widget.DefaultWidgetModel
 
isType(Class<?>) - Method in interface org.scijava.widget.WidgetModel
Gets whether the input is compatible with the given type.
isUniqueName(String) - Method in class org.scijava.display.DefaultDisplayService
 
isUniqueName(String) - Method in interface org.scijava.display.DisplayService
Checks whether the given name is already taken by an existing display.
isValid() - Method in class org.scijava.command.CommandInfo
 
isValid() - Method in class org.scijava.command.DynamicCommandInfo
 
isValid() - Method in class org.scijava.module.MethodRef
 
isValid() - Method in interface org.scijava.module.ModuleInfo
 
isValid() - Method in interface org.scijava.Validated
Gets whether the object is completely valid (i.e., no problems during initialization).
isValidChar(char) - Method in class org.scijava.ui.swing.script.autocompletion.JythonAutocompletionProvider
Override parent implementation to allow letters, digits, the period and a space, to be able to match e.g.: "from " "from ij" "from ij.Im" etc.
isVariable(Object) - Static method in class org.scijava.parsington.Tokens
 
isVisible() - Method in class org.scijava.AbstractUIDetails
 
isVisible() - Method in class org.scijava.platform.event.AppVisibleEvent
 
isVisible() - Method in class org.scijava.ui.AbstractUserInterface
 
isVisible() - Method in class org.scijava.ui.DefaultUIService
 
isVisible(String) - Method in class org.scijava.ui.DefaultUIService
 
isVisible() - Method in class org.scijava.ui.headless.HeadlessUI
 
isVisible(LogFormatter.Field) - Method in class org.scijava.ui.swing.console.LogFormatter
 
isVisible() - Method in class org.scijava.ui.swing.SwingDialog
Whether the dialog is currently being shown onscreen.
isVisible() - Method in interface org.scijava.ui.UIService
Gets whether the default UI is visible.
isVisible(String) - Method in interface org.scijava.ui.UIService
Gets whether the UI with the given name or class name is visible.
isVisible() - Method in interface org.scijava.ui.UserInterface
Whether this UI is visible onscreen.
isVisible() - Method in interface org.scijava.UIDetails
Gets whether the object should be visible in the user interface.
isWaking() - Method in class org.scijava.platform.event.AppSleepEvent
 
isWarn() - Method in interface org.scijava.log.Logger
 
isWarning() - Method in class org.scijava.app.event.StatusEvent
Returns whether or not this is a warning event.
isWindows() - Static method in class org.scijava.util.PlatformUtils
Whether the operating system is Windows-based.
isWritable() - Method in class org.scijava.download.MultiWriteHandle
 
isWritable() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
isWritable() - Method in class org.scijava.io.handle.BytesHandle
 
isWritable() - Method in interface org.scijava.io.handle.DataHandle
Gets whether writing to this handle is supported.
isWritable() - Method in class org.scijava.io.handle.DummyHandle
 
isWritable() - Method in class org.scijava.io.handle.FileHandle
 
isWritable() - Method in class org.scijava.io.http.HTTPHandle
 
Item - Interface in org.scijava.parse
An item from the list of parsed items; i.e.: a name/value pair.
ItemIO - Enum in org.scijava
Defines the input/output type of a module.
Items - Interface in org.scijava.parse
An ordered list of items, some of which might be key/value pairs, and some of which might be raw values.
itemStateChanged(ItemEvent) - Method in class org.scijava.ui.awt.widget.AWTChoiceWidget
 
itemStateChanged(ItemEvent) - Method in class org.scijava.ui.awt.widget.AWTObjectWidget
 
ItemVisibility - Enum in org.scijava
Defines the "visibility" of a parameter.
iterator() - Method in class org.scijava.annotations.Index
 
iterator() - Method in class org.scijava.display.AbstractDisplay
 
iterator() - Method in class org.scijava.menu.ShadowMenu
 
iterator() - Method in class org.scijava.object.ObjectIndex
 
iterator() - Method in class org.scijava.parsington.SyntaxTree
 
iterator() - Method in interface org.scijava.table.Column
 
iterator() - Method in interface org.scijava.table.Table
Returns an iterator over the columns in the table in proper sequence.
iterator() - Method in class org.scijava.ui.swing.console.LogRecorder
The returned Iterator never fails, and will always be updated.
iterator() - Method in class org.scijava.ui.swing.script.TokenFunctions
 
iterator() - Method in class org.scijava.util.IteratorPlus
 
iterator() - Method in class org.scijava.util.LastRecentlyUsed
Returns an Iterator.
iteratorAtEnd() - Method in class org.scijava.ui.swing.console.LogRecorder
Same as LogRecorder.iterator(), but the Iterator will only return log messages and text recorded after the iterator has been created.
IteratorPlus<E> - Class in org.scijava.util
A class that provides more thorough support for iteration.
IteratorPlus(Iterable<E>) - Constructor for class org.scijava.util.IteratorPlus
 
IteratorPlus(Enumeration<E>) - Constructor for class org.scijava.util.IteratorPlus
 
IteratorPlus(Iterator<E>) - Constructor for class org.scijava.util.IteratorPlus
 
IVORY - Static variable in class org.scijava.util.Colors
 

J

JarClassLoader - Class in org.scijava.minimaven
TODO
JarClassLoader(String...) - Constructor for class org.scijava.minimaven.JarClassLoader
 
JarProperties(String, ArrayList<String>) - Constructor for class org.scijava.ui.swing.script.autocompletion.ClassUtil.JarProperties
 
Java3DService - Interface in org.scijava.java3d
Interface for services which work with Java 3D.
JAVA_TMPDIR - Static variable in class org.scijava.nativelib.BaseJniExtractor
 
javac - Variable in class org.scijava.minimaven.BuildEnvironment
 
javac - Static variable in class org.scijava.minimaven.JavaCompiler
 
JavaCompiler - Class in org.scijava.minimaven
Encapsulates the Java compiler, falling back to command-line javac.
JavaCompiler(PrintStream, PrintStream) - Constructor for class org.scijava.minimaven.JavaCompiler
 
JavaCompiler.CompileError - Exception in org.scijava.minimaven
 
JavadocSearchActionFactory - Class in org.scijava.search.classes
Search action for viewing the javadoc of a Java class.
JavadocSearchActionFactory() - Constructor for class org.scijava.search.classes.JavadocSearchActionFactory
 
JavadocService - Interface in org.scijava.search.javadoc
Service for mapping packages to Javadoc URLs.
JavaEngine - Class in org.scijava.plugins.scripting.java
A pseudo-ScriptEngine compiling and executing Java classes.
JavaEngine() - Constructor for class org.scijava.plugins.scripting.java.JavaEngine
 
JavaEngineBindings - Class in org.scijava.plugins.scripting.java
Pseudo-Bindings for the JavaEngine.
JavaEngineBindings() - Constructor for class org.scijava.plugins.scripting.java.JavaEngineBindings
 
JavaLanguageSupportPlugin - Class in org.scijava.ui.swing.script.languagesupport
LanguageSupportPlugin for the java language.
JavaLanguageSupportPlugin() - Constructor for class org.scijava.ui.swing.script.languagesupport.JavaLanguageSupportPlugin
 
JavaScriptLanguage - Class in org.scijava.plugins.scripting.java
Provides Java as a ScriptLanguage.
JavaScriptLanguage() - Constructor for class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
JavaScriptLanguageSupportPlugin - Class in org.scijava.ui.swing.script.languagesupport
LanguageSupportPlugin for the javascript language.
JavaScriptLanguageSupportPlugin() - Constructor for class org.scijava.ui.swing.script.languagesupport.JavaScriptLanguageSupportPlugin
 
JavaScriptScriptLanguage - Class in org.scijava.plugins.scripting.javascript
An adapter of the JavaScript interpreter to the SciJava scripting interface.
JavaScriptScriptLanguage() - Constructor for class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
 
javaVendor() - Method in interface org.scijava.platform.Platform
Java Runtime Environment vendor to match.
javaVersion() - Method in interface org.scijava.platform.Platform
Minimum required Java Runtime Environment version.
JMDIDesktopPane - Class in org.scijava.ui.swing.mdi
An extension of JDesktopPane that supports often used MDI functionality.
JMDIDesktopPane() - Constructor for class org.scijava.ui.swing.mdi.JMDIDesktopPane
 
JniExtractor - Interface in org.scijava.nativelib
 
JRubyScriptHeader - Class in org.scijava.plugins.scripting.jruby
Provides a default script header when editing JRubyScriptLanguage scripts.
JRubyScriptHeader() - Constructor for class org.scijava.plugins.scripting.jruby.JRubyScriptHeader
 
JRubyScriptLanguage - Class in org.scijava.plugins.scripting.jruby
An adapter of the JRuby interpreter to the SciJava scripting interface.
JRubyScriptLanguage() - Constructor for class org.scijava.plugins.scripting.jruby.JRubyScriptLanguage
 
JsonConfigIO - Class in org.scijava.ui.behaviour.io.json
 
JsonConfigIO() - Constructor for class org.scijava.ui.behaviour.io.json.JsonConfigIO
 
JTextAreaOutputStream - Class in org.scijava.ui.swing.script
TODO
JTextAreaOutputStream(JTextArea) - Constructor for class org.scijava.ui.swing.script.JTextAreaOutputStream
Creates a new output stream that prints every 400 ms to the textArea.
JTextAreaWriter - Class in org.scijava.ui.swing.script
A Writer adapter for the output area of the script editor.
JTextAreaWriter(JTextArea, LogService) - Constructor for class org.scijava.ui.swing.script.JTextAreaWriter
Creates a new output stream that prints every 400 ms to the textArea.
jump(long) - Method in interface org.scijava.io.handle.StreamHandle
 
jumpToSelectedBookmark() - Method in class org.scijava.ui.swing.script.BookmarkDialog
 
JythonAutoCompletion - Class in org.scijava.ui.swing.script.autocompletion
 
JythonAutoCompletion(CompletionProvider) - Constructor for class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion
 
JythonAutoCompletion.Import - Class in org.scijava.ui.swing.script.autocompletion
 
JythonAutocompletionProvider - Class in org.scijava.ui.swing.script.autocompletion
 
JythonAutocompletionProvider(RSyntaxTextArea, ImportFormat) - Constructor for class org.scijava.ui.swing.script.autocompletion.JythonAutocompletionProvider
 
JythonImportFormat - Class in org.scijava.ui.swing.script.autocompletion
 
JythonImportFormat() - Constructor for class org.scijava.ui.swing.script.autocompletion.JythonImportFormat
 
JythonLanguageSupportPlugin - Class in org.scijava.ui.swing.script.languagesupport
LanguageSupportPlugin for the jython language.
JythonLanguageSupportPlugin() - Constructor for class org.scijava.ui.swing.script.languagesupport.JythonLanguageSupportPlugin
 
JythonScriptLanguage - Class in org.scijava.plugins.scripting.jython
An adapter of the Jython interpreter to the SciJava scripting interface.
JythonScriptLanguage() - Constructor for class org.scijava.plugins.scripting.jython.JythonScriptLanguage
 

K

keyClicks - Variable in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
KeyCode - Enum in org.scijava.input
A UI-independent enumeration of keyboard key codes.
keyConfig - Variable in class org.scijava.ui.behaviour.util.Actions
 
keyConfig - Variable in class org.scijava.ui.behaviour.util.Behaviours
 
keyDrags - Variable in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
keyPressed(KeyEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
keyPressed(KeyEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
KeyPressedManager - Class in org.scijava.ui.behaviour
Distributes KEY_PRESSED events between windows that share the same KeyPressedManager.
KeyPressedManager() - Constructor for class org.scijava.ui.behaviour.KeyPressedManager
 
KeyPressedManager.KeyPressedReceiver - Interface in org.scijava.ui.behaviour
 
keyReleased(KeyEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
keyReleased(KeyEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
keys() - Method in class org.scijava.ui.behaviour.BehaviourMap
 
keys() - Method in class org.scijava.ui.behaviour.util.WrappedActionMap
 
keys() - Method in class org.scijava.ui.behaviour.util.WrappedInputMap
 
keySet() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
keySet() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
keySet() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
keySet() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
keyStrokeAdder(InputMap, String...) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
KeyStrokeAdder - Interface in org.scijava.ui.behaviour
 
keyStrokeAdder(InputMap, String...) - Method in interface org.scijava.ui.behaviour.KeyStrokeAdder.Factory
 
keyStrokeAdder - Variable in class org.scijava.ui.behaviour.util.Actions
 
KeyStrokeAdder.Factory - Interface in org.scijava.ui.behaviour
 
KeyStrokeAdderImp(InputMap, InputTriggerConfig, Set<String>) - Constructor for class org.scijava.ui.behaviour.io.InputTriggerConfig.KeyStrokeAdderImp
 
KeyStrokeAdderImp(InputMap, InputTriggerConfig, String...) - Constructor for class org.scijava.ui.behaviour.io.InputTriggerConfig.KeyStrokeAdderImp
 
keyTyped(KeyEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
keyTyped(KeyEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
KHAKI - Static variable in class org.scijava.util.Colors
 
kill(TextEditor.Executer) - Method in class org.scijava.ui.swing.script.TextEditor
 
kill() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
KillScript - Class in org.scijava.ui.swing.script.commands
Kills a running script started in the given script editor.
KillScript() - Constructor for class org.scijava.ui.swing.script.commands.KillScript
 
KotlinScriptLanguage - Class in org.scijava.plugins.scripting.kotlin
A SciJava ScriptLanguage for Kotlin.
KotlinScriptLanguage() - Constructor for class org.scijava.plugins.scripting.kotlin.KotlinScriptLanguage
 
KyEvent - Class in org.scijava.display.event.input
An event indicating keyboard activity in a display.
KyEvent(Display<?>, InputModifiers, int, int, char, KeyCode) - Constructor for class org.scijava.display.event.input.KyEvent
 
KyPressedEvent - Class in org.scijava.display.event.input
An event indicating a keyboard key was pressed in a display.
KyPressedEvent(Display<?>, InputModifiers, int, int, char, KeyCode) - Constructor for class org.scijava.display.event.input.KyPressedEvent
 
KyReleasedEvent - Class in org.scijava.display.event.input
An event indicating a keyboard key was released in a display.
KyReleasedEvent(Display<?>, InputModifiers, int, int, char, KeyCode) - Constructor for class org.scijava.display.event.input.KyReleasedEvent
 
KyTypedEvent - Class in org.scijava.display.event.input
An event indicating a keyboard key was typed (i.e., pressed and released) in a display.
KyTypedEvent(Display<?>, InputModifiers, int, int, char, KeyCode) - Constructor for class org.scijava.display.event.input.KyTypedEvent
 

L

label - Variable in class org.scijava.swing.checkboxtree.CheckBoxNodePanel
 
lang(String) - Method in class org.scijava.script.ScriptREPL
Creates a new ScriptInterpreter to interpret statements, preserving existing variables from the previous interpreter.
lang(ScriptLanguage) - Method in class org.scijava.script.ScriptREPL
Creates a new ScriptInterpreter to interpret statements, preserving existing variables from the previous interpreter.
langs() - Method in class org.scijava.script.ScriptREPL
 
language() - Method in class org.scijava.search.snippet.SnippetSearchResult
 
LanguageSupportPlugin - Interface in org.scijava.ui.swing.script
Interface for AutoCompletion plugins.
LanguageSupportService - Interface in org.scijava.ui.swing.script
Service which manages LanguageSupportPlugins.
LAST - Static variable in class org.scijava.Priority
Priority for items that must be sorted last.
LAST_LANGUAGE - Static variable in class org.scijava.ui.swing.script.TextEditor
 
LAST_PRIORITY - Static variable in class org.scijava.Priority
Deprecated.
Use Priority.LAST instead.
lastIndexOf(Object) - Method in class org.scijava.display.AbstractDisplay
 
lastIndexOf(Object) - Method in interface org.scijava.table.Column
 
lastIndexOf(Object) - Method in interface org.scijava.table.Table
Returns the index of the last occurrence of the specified column in the table, or -1 if the table does not contain the column.
lastIndexOf(boolean) - Method in class org.scijava.util.BoolArray
 
lastIndexOf(Object) - Method in class org.scijava.util.BoolArray
 
lastIndexOf(byte) - Method in class org.scijava.util.ByteArray
 
lastIndexOf(Object) - Method in class org.scijava.util.ByteArray
 
lastIndexOf(char) - Method in class org.scijava.util.CharArray
 
lastIndexOf(Object) - Method in class org.scijava.util.CharArray
 
lastIndexOf(double) - Method in class org.scijava.util.DoubleArray
 
lastIndexOf(Object) - Method in class org.scijava.util.DoubleArray
 
lastIndexOf(float) - Method in class org.scijava.util.FloatArray
 
lastIndexOf(Object) - Method in class org.scijava.util.FloatArray
 
lastIndexOf(int) - Method in class org.scijava.util.IntArray
 
lastIndexOf(Object) - Method in class org.scijava.util.IntArray
 
lastIndexOf(long) - Method in class org.scijava.util.LongArray
 
lastIndexOf(Object) - Method in class org.scijava.util.LongArray
 
lastIndexOf(Object) - Method in class org.scijava.util.ObjectArray
 
lastIndexOf(short) - Method in class org.scijava.util.ShortArray
 
lastIndexOf(Object) - Method in class org.scijava.util.ShortArray
 
lastModified() - Method in class org.scijava.download.MultiWriteHandle
 
lastModified() - Method in interface org.scijava.io.handle.DataHandle
Gets the last modified timestamp of the location.
lastModified() - Method in class org.scijava.io.handle.FileHandle
 
lastModified() - Method in class org.scijava.io.http.HTTPHandle
 
LastRecentlyUsed<T> - Class in org.scijava.util
A simple container for N last-recently-used items.
LastRecentlyUsed(int) - Constructor for class org.scijava.util.LastRecentlyUsed
 
launch(String...) - Method in class org.scijava.AbstractGateway
 
launch(String...) - Method in interface org.scijava.Gateway
Perform launch operations associated with this gateway.
LAVENDER - Static variable in class org.scijava.util.Colors
 
LAVENDERBLUSH - Static variable in class org.scijava.util.Colors
 
LAWNGREEN - Static variable in class org.scijava.util.Colors
 
LazyObjects<T> - Interface in org.scijava.object
Interface for objects created lazily.
leafDoubleClicked(File) - Method in interface org.scijava.ui.swing.script.FileSystemTree.LeafListener
 
LEFT_BUTTON - Static variable in class org.scijava.display.event.input.MsButtonEvent
 
LEFT_SHIFT - Static variable in class org.scijava.parsington.Operators
 
LEFT_SHIFT_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
leftShift(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
leftShift(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
leftShift(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
leftShift(BigInteger, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
leftShift(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.LEFT_SHIFT operator.
leftShiftAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
leftShiftAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.LEFT_SHIFT_ASSIGN operator.
LegacyReader - Class in org.scijava.annotations.legacy
Reads legacy annotation indexes.
LegacyReader(InputStream) - Constructor for class org.scijava.annotations.legacy.LegacyReader
 
LEMONCHIFFON - Static variable in class org.scijava.util.Colors
 
len - Variable in class org.scijava.util.LineOutputStream
 
length() - Method in class org.scijava.download.MultiWriteHandle
 
length() - Method in class org.scijava.io.handle.AbstractHigherOrderHandle
 
length() - Method in class org.scijava.io.handle.BytesHandle
 
length() - Method in interface org.scijava.io.handle.DataHandle
Returns the length of the data in bytes.
length() - Method in class org.scijava.io.handle.DummyHandle
 
length() - Method in class org.scijava.io.handle.FileHandle
 
length() - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
length() - Method in class org.scijava.io.http.HTTPHandle
 
length() - Method in class org.scijava.parsington.SubSequence
 
LengthWarner(int, JTextComponent) - Constructor for class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
LESS_THAN - Static variable in class org.scijava.parsington.Operators
 
LESS_THAN_OR_EQUAL - Static variable in class org.scijava.parsington.Operators
 
lessThan(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
lessThan(Comparable<T>, T) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
lessThan(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.LESS_THAN operator.
lessThanOrEqual(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
lessThanOrEqual(Comparable<T>, T) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
lessThanOrEqual(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.LESS_THAN_OR_EQUAL operator.
level() - Method in class org.scijava.log.LogMessage
Log level of the message.
licensePath() - Method in class org.scijava.plugins.scripting.matlab.MATLABOptions
 
LIGHTBLUE - Static variable in class org.scijava.util.Colors
 
LIGHTCORAL - Static variable in class org.scijava.util.Colors
 
LIGHTCYAN - Static variable in class org.scijava.util.Colors
 
LIGHTGOLDENRODYELLOW - Static variable in class org.scijava.util.Colors
 
LIGHTGRAY - Static variable in class org.scijava.util.Colors
 
LIGHTGREEN - Static variable in class org.scijava.util.Colors
 
LIGHTGREY - Static variable in class org.scijava.util.Colors
 
LIGHTPINK - Static variable in class org.scijava.util.Colors
 
LIGHTSALMON - Static variable in class org.scijava.util.Colors
 
LIGHTSEAGREEN - Static variable in class org.scijava.util.Colors
 
LIGHTSKYBLUE - Static variable in class org.scijava.util.Colors
 
LIGHTSLATEGRAY - Static variable in class org.scijava.util.Colors
 
LIGHTSLATEGREY - Static variable in class org.scijava.util.Colors
 
LIGHTSTEELBLUE - Static variable in class org.scijava.util.Colors
 
LIGHTYELLOW - Static variable in class org.scijava.util.Colors
 
LIME - Static variable in class org.scijava.util.Colors
 
LIMEGREEN - Static variable in class org.scijava.util.Colors
 
limitPath(String, int) - Static method in class org.scijava.util.FileUtils
Compacts a path into a given number of characters.
LINE_WRAP_PREFS - Static variable in class org.scijava.ui.swing.script.EditorPane
 
LINEN - Static variable in class org.scijava.util.Colors
 
lineNumber - Variable in class org.scijava.ui.swing.script.autocompletion.JythonAutoCompletion.Import
 
LineOutputStream - Class in org.scijava.util
This class hides a line-based output behind an OutputStream.
LineOutputStream() - Constructor for class org.scijava.util.LineOutputStream
 
list - Variable in class org.scijava.ui.swing.script.ErrorHandler
 
LIST_BOX_STYLE - Static variable in interface org.scijava.widget.ChoiceWidget
Widget style for list boxes.
listBookmarks() - Method in class org.scijava.ui.swing.script.TextEditor
 
listContents(URL) - Static method in class org.scijava.util.FileUtils
Recursively lists the contents of the referenced directory.
listContents(URL, boolean, boolean) - Static method in class org.scijava.util.FileUtils
Lists all contents of the referenced directory.
listDependencies(ClassLoader) - Method in class org.scijava.grab.DefaultGrabService
 
listDependencies(ClassLoader) - Method in interface org.scijava.grab.GrabService
 
ListDragAndDropHandler - Class in org.scijava.ui.dnd
Drag-and-drop handler for lists of objects.
ListDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.ListDragAndDropHandler
 
ListEvent<T> - Class in org.scijava.object.event
An event indicating something has happened to a list of items.
ListEvent(T) - Constructor for class org.scijava.object.event.ListEvent
 
ListEvent(Collection<? extends T>) - Constructor for class org.scijava.object.event.ListEvent
 
listFilesRecursively(File, String, List<String>) - Method in class org.scijava.ui.swing.script.FileFunctions
Get a list of files from a directory (recursively)
listIterator() - Method in class org.scijava.display.AbstractDisplay
 
listIterator(int) - Method in class org.scijava.display.AbstractDisplay
 
listIterator() - Method in interface org.scijava.table.Column
 
listIterator(int) - Method in interface org.scijava.table.Column
 
listIterator() - Method in interface org.scijava.table.Table
Returns a list iterator over the columns in the table (in proper sequence).
listIterator(int) - Method in interface org.scijava.table.Table
Returns a list iterator of the columns in the table (in proper sequence), starting at the specified position in the table.
ListUtils - Class in org.scijava.util
Useful methods for working with Lists.
Literals - Class in org.scijava.parsington
Utility methods for parsing literals from strings.
load(Class<A>) - Static method in class org.scijava.annotations.Index
Loads the index of all classes annotated with the specified annotation.
load(Class<A>, ClassLoader) - Static method in class org.scijava.annotations.Index
Loads the index of all classes annotated with the specified annotation.
load(ModuleItem<T>) - Method in class org.scijava.module.DefaultModuleService
 
load(ModuleItem<T>) - Method in interface org.scijava.module.ModuleService
Returns the value, if any, stored in the PrefService for the given ModuleItem.
load() - Method in class org.scijava.options.OptionsPlugin
Loads option values from persistent storage.
load(String) - Static method in class org.scijava.util.Types
Loads the class with the given name, using the current thread's context class loader, or null if it cannot be loaded.
load(String, ClassLoader) - Static method in class org.scijava.util.Types
Loads the class with the given name, using the specified ClassLoader, or null if it cannot be loaded.
load(String, boolean) - Static method in class org.scijava.util.Types
Loads the class with the given name, using the current thread's context class loader.
load(String, ClassLoader, boolean) - Static method in class org.scijava.util.Types
Loads the class with the given name, using the specified ClassLoader, or null if it cannot be loaded.
loadChecksum(Location) - Method in class org.scijava.download.DiskLocationCache
 
loadChecksum(Location) - Method in interface org.scijava.download.LocationCache
Loads the checksum value which corresponds to the cached location.
loadClass() - Method in class org.scijava.command.CommandInfo
 
loadClass() - Method in interface org.scijava.Instantiable
Loads the class corresponding to the objects that are created by Instantiable.createInstance().
loadClass(String) - Method in class org.scijava.minimaven.JarClassLoader
 
loadClass(String, boolean) - Method in class org.scijava.minimaven.JarClassLoader
 
loadClass(String, boolean, boolean) - Method in class org.scijava.minimaven.JarClassLoader
 
loadClass() - Method in class org.scijava.plugin.PluginInfo
 
loadClass(String) - Static method in class org.scijava.util.ClassUtils
Deprecated.
Use Types.load(String) instead.
loadClass(String, ClassLoader) - Static method in class org.scijava.util.ClassUtils
Deprecated.
loadClass(String, boolean) - Static method in class org.scijava.util.ClassUtils
Deprecated.
loadClass(String, ClassLoader, boolean) - Static method in class org.scijava.util.ClassUtils
loadDelegateClass() - Method in class org.scijava.command.CommandInfo
 
loadDelegateClass() - Method in interface org.scijava.module.ModuleInfo
Loads the class containing the module's actual implementation.
loadDelegateClass() - Method in interface org.scijava.module.MutableModuleInfo
 
loadDelegateClass() - Method in class org.scijava.script.ScriptInfo
 
loadFolders() - Method in class org.scijava.ui.swing.script.EditorPane
 
loadInputs(Module) - Method in class org.scijava.module.DefaultModuleService
 
loadInputs(Module) - Method in interface org.scijava.module.ModuleService
Loads values from persistent storage into the given Module.
LoadInputsPreprocessor - Class in org.scijava.module.process
A preprocessor for loading populated input values from persistent storage.
LoadInputsPreprocessor() - Constructor for class org.scijava.module.process.LoadInputsPreprocessor
 
loadLibrary(String, String...) - Static method in class org.scijava.nativelib.NativeLoader
Extract the given library from a jar, and load it.
loadNativeLibrary(JniExtractor, String, String...) - Static method in class org.scijava.nativelib.NativeLibraryUtil
Loads the native library.
loadNativeLibrary(Class<?>, String) - Static method in class org.scijava.nativelib.NativeLibraryUtil
Deprecated.
loadPreferences() - Method in class org.scijava.ui.swing.script.EditorPane
Loads the preferences for the Tab and apply them.
loadPreferences() - Method in class org.scijava.ui.swing.script.TextEditor
Loads the Script Editor layout from persisted storage.
loadService(Class<S>) - Method in class org.scijava.service.ServiceHelper
Obtains a service compatible with the given class, instantiating it (and registering it in the index) if necessary.
loadServices() - Method in class org.scijava.service.ServiceHelper
Ensures all candidate service classes are registered in the index, locating and instantiating compatible services as needed.
loadTemplate(String) - Method in class org.scijava.ui.swing.script.TextEditor
Loads a template file from the given resource
loadTemplate(URL) - Method in class org.scijava.ui.swing.script.TextEditor
 
loadTemplate(URL, ScriptLanguage) - Method in class org.scijava.ui.swing.script.TextEditor
 
loadValue() - Method in class org.scijava.module.AbstractModuleItem
Deprecated.
loadValue() - Method in interface org.scijava.module.ModuleItem
Deprecated. 
loadVersionedNativeLibrary(Class<?>, String) - Static method in class org.scijava.nativelib.NativeLibraryUtil
Loads the native library.
loadXML(InputStream) - Static method in class org.scijava.util.XML
Loads an XML document from the given input stream.
loadXML(String) - Static method in class org.scijava.util.XML
Loads an XML document from the given input stream.
localPOMCache - Variable in class org.scijava.minimaven.BuildEnvironment
 
Locatable - Interface in org.scijava
An object whose location is defined by a URL string.
locateCenter(Container) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
locateLowerLeft(Container) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
locateLowerRight(Container) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
locateUpperLeft(Container) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
locateUpperRight(Container) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
Location - Interface in org.scijava.io.location
A location is a data descriptor, such as a file on disk, a remote URL, or a database connection.
location(Class<?>, String) - Static method in class org.scijava.search.classes.ClassesSearcher
Gets an abbreviated location for the given class.
location() - Method in class org.scijava.search.classes.ClassSearchResult
 
location(ModuleInfo, String) - Static method in class org.scijava.search.module.ModuleSearcher
Gets an abbreviated location for the given module.
location(Class<?>) - Static method in class org.scijava.util.Types
Gets the base location of the given class.
location(Class<?>, boolean) - Static method in class org.scijava.util.Types
Gets the base location of the given class.
LocationCache - Interface in org.scijava.download
An object which knows how to convert a slow (typically remote) Location to a faster (typically local) one.
LocationResolver - Interface in org.scijava.io.location
LocationResolver plugins allow resolving an URI to a Location.
locationService() - Method in class org.scijava.io.AbstractTypedIOService
 
LocationService - Interface in org.scijava.io.location
A service that allows resolving of URIs to Locations, using LocationResolver plugins for translation.
log() - Method in class org.scijava.AbstractGateway
 
log() - Method in class org.scijava.command.InteractiveCommand
 
log() - Method in interface org.scijava.Gateway
Gets this application context's LogService.
log() - Method in interface org.scijava.log.Logged
Gets the LogService to use when logging activities.
log(int, Object) - Method in interface org.scijava.log.Logger
Logs a message.
log(int, Throwable) - Method in interface org.scijava.log.Logger
Logs an exception.
log(int, Object, Throwable) - Method in interface org.scijava.log.Logger
Logs a message with an exception.
log() - Method in interface org.scijava.plugin.RichPlugin
 
log() - Method in class org.scijava.script.AbstractScriptEngine
 
log - Variable in class org.scijava.ui.swing.script.JTextAreaWriter
 
log() - Method in class org.scijava.ui.swing.script.TextEditor
 
LOG_LEVEL_BY_SOURCE_PROPERTY - Static variable in interface org.scijava.log.LogService
 
LOG_LEVEL_PROPERTY - Static variable in interface org.scijava.log.LogService
System property to set for overriding the default logging level.
LogFormatter - Class in org.scijava.ui.swing.console
Used by LoggingPanel to simplify formatting log messages.
LogFormatter(Context, String) - Constructor for class org.scijava.ui.swing.console.LogFormatter
 
LogFormatter.Field - Enum in org.scijava.ui.swing.console
 
Logged - Interface in org.scijava.log
Interface for the objects which want to log their activities.
Logger - Interface in org.scijava.log
Interface for objects which can produce log messages.
LoggerPreprocessor - Class in org.scijava.module.process
This PreprocessorPlugin affects Modules with a single Parameter of type Logger.
LoggerPreprocessor() - Constructor for class org.scijava.module.process.LoggerPreprocessor
 
LoggingPanel - Class in org.scijava.ui.swing.console
LoggingPanel can display log messages, and provides convenient ways for the user to filter this list.
LoggingPanel(Context) - Constructor for class org.scijava.ui.swing.console.LoggingPanel
 
LoggingPanel(Context, String) - Constructor for class org.scijava.ui.swing.console.LoggingPanel
 
LOGICAL_AND - Static variable in class org.scijava.parsington.Operators
 
LOGICAL_OR - Static variable in class org.scijava.parsington.Operators
 
logicalAnd(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
logicalAnd(boolean, boolean) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
logicalAnd(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.LOGICAL_AND operator.
logicalOr(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
logicalOr(boolean, boolean) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
logicalOr(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.LOGICAL_OR operator.
LogLevel - Class in org.scijava.log
Constants for specifying a logger's level of verbosity.
logLevel() - Method in class org.scijava.log.LogSource
 
LogListener - Interface in org.scijava.log
Callback function used by Logger.
LogMessage - Class in org.scijava.log
A log message broadcast by a Logger.
LogMessage(LogSource, int, Object, Throwable) - Constructor for class org.scijava.log.LogMessage
 
LogMessage(LogSource, int, Object) - Constructor for class org.scijava.log.LogMessage
 
LogRecorder - Class in org.scijava.ui.swing.console
LogRecorder is used to decouple the GUI displaying log messages from the potentially highly concurrent code emitting log messages.
LogRecorder() - Constructor for class org.scijava.ui.swing.console.LogRecorder
 
LogService - Interface in org.scijava.log
Interface for the logging service.
LogSource - Class in org.scijava.log
Identifies where a LogMessage came from.
LongArray - Class in org.scijava.util
An extensible array of long elements.
LongArray() - Constructor for class org.scijava.util.LongArray
Constructs an extensible array of longs, backed by a fixed-size array.
LongArray(int) - Constructor for class org.scijava.util.LongArray
Constructs an extensible array of longs, backed by a fixed-size array.
LongArray(long[]) - Constructor for class org.scijava.util.LongArray
Constructs an extensible array of longs, backed by the given fixed-size array.
LongArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.LongArrayUnwrapper
 
LongArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.LongArrayWrapper
 
LongColumn - Class in org.scijava.table
Efficient implementation of Column for long primitives.
LongColumn() - Constructor for class org.scijava.table.LongColumn
 
LongColumn(String) - Constructor for class org.scijava.table.LongColumn
 
LongTable - Interface in org.scijava.table
A table of long-precision integer values.
LongToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.LongToBigDecimalConverter
 
LongToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.LongToBigIntegerConverter
 
lookup(T) - Method in class org.scijava.util.LastRecentlyUsed
Looks up the index for a given entry.
lookupClass(String) - Method in class org.scijava.script.DefaultScriptService
 
lookupClass(String) - Method in interface org.scijava.script.ScriptService
TODO
loop() - Method in class org.scijava.script.ScriptREPL
Starts a Read-Eval-Print-Loop from the standard input stream, returning when the loop terminates.
loop(InputStream) - Method in class org.scijava.script.ScriptREPL
Starts a Read-Eval-Print-Loop from the given input stream, returning when the loop terminates.
loseFocus() - Method in class org.scijava.ui.swing.search.SwingSearchBar
Called on the EDT when the search text field wants to lose the focus.
LOW - Static variable in class org.scijava.Priority
Priority for items that prefer to be sorted later.
LOW_PRIORITY - Static variable in class org.scijava.Priority
Deprecated.
Use Priority.LOW instead.

M

MacOSAppEventDispatcher - Class in org.scijava.plugins.platforms.macos
Rebroadcasts macOS application events as ImageJ events.
MacOSAppEventDispatcher(EventService) - Constructor for class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
MacOSAppEventDispatcher(Application, EventService) - Constructor for class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
MacOSPlatform - Class in org.scijava.plugins.platforms.macos
A platform implementation for handling Apple macOS platform issues: Application events are rebroadcast as ImageJ events. macOS screen menu bar is enabled. Special screen menu bar menu items are handled.
MacOSPlatform() - Constructor for class org.scijava.plugins.platforms.macos.MacOSPlatform
 
MACRO_FUNCTIONS_URL - Variable in class org.scijava.ui.swing.script.MacroFunctions
 
MacroFunctions - Class in org.scijava.ui.swing.script
TODO
MacroFunctions(TextEditor) - Constructor for class org.scijava.ui.swing.script.MacroFunctions
 
MAGENTA - Static variable in class org.scijava.util.Colors
 
main() - Method in class org.scijava.AbstractGateway
 
main(String[]) - Static method in class org.scijava.annotations.AnnotationCombiner
 
main(String...) - Static method in class org.scijava.annotations.EclipseHelper
Updates the annotation index in the current Eclipse project.
main() - Method in interface org.scijava.Gateway
Gets this application context's MainService.
main(String[]) - Static method in class org.scijava.minimaven.MiniMaven
 
Main - Class in org.scijava.parsington
Launches the console-driven expression evaluator.
main(String[]) - Static method in class org.scijava.parsington.Main
 
main(String...) - Static method in class org.scijava.script.ScriptREPL
 
main(String[]) - Static method in class org.scijava.ui.swing.mdi.ModalInternalFrame
 
main(String[]) - Static method in class org.scijava.util.CombineAnnotations
Deprecated.
main(String[]) - Static method in class org.scijava.util.MersenneTwisterFast
Tests the code.
main(String...) - Static method in class org.scijava.util.MetaInfCombiner
 
main(String[]) - Static method in class org.scijava.util.MirrorWebsite
 
main(String[]) - Static method in class org.scijava.util.ReflectedUniverse
Allows exploration of a reflected universe in an interactive environment.
main(String...) - Static method in class org.scijava.util.ServiceCombiner
 
MAIN_DIV_LOCATION - Static variable in class org.scijava.ui.swing.script.TextEditor
 
MainArgument - Class in org.scijava.main.console
Handles the --main command line argument, which launches an alternative main class.
MainArgument() - Constructor for class org.scijava.main.console.MainArgument
 
mainClass - Variable in class org.scijava.minimaven.MavenProject
 
MainCodeRunner - Class in org.scijava.main.run
Executes the given class's main method.
MainCodeRunner() - Constructor for class org.scijava.main.run.MainCodeRunner
 
MainService - Interface in org.scijava.main
Interface for services which manage dynamic execution of main methods.
MainService.Main - Interface in org.scijava.main
Data structure containing main class and argument values.
makeArray(byte[], int, boolean, boolean) - Static method in class org.scijava.util.Bytes
Converts a byte array to the appropriate 1D primitive type array.
makeArray2D(byte[], int, boolean, boolean, int) - Static method in class org.scijava.util.Bytes
Converts a byte array to the appropriate 2D primitive type array.
makeBuffered(Image) - Static method in class org.scijava.ui.awt.AWTImageTools
Ensures that the given Image is a BufferedImage, converting if necessary.
makeJar(File, boolean, File, Writer) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Packages the build product into a .jar file.
makeJar(boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
makeJar(File, boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
makeMATLABVariable(String, Object) - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
makeMATLABVariable(String, Object) - Method in interface org.scijava.plugins.scripting.matlab.MATLABService
Attempts to create a variable in MATLAB with the give name and value.
makeParentDirectories(File) - Method in class org.scijava.ui.swing.script.FileFunctions
 
makeSigned(byte[]) - Static method in class org.scijava.util.Bytes
 
makeSigned(short[]) - Static method in class org.scijava.util.Bytes
 
makeSigned(int[]) - Static method in class org.scijava.util.Bytes
 
Manifest - Class in org.scijava.util
Helper class for working with JAR manifests.
map() - Static method in class org.scijava.util.Colors
Gets the table of all preset colors.
mapToString(Map<?, ?>) - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
mark(int) - Method in class org.scijava.io.handle.DataHandleInputStream
 
markCompileEnd() - Method in class org.scijava.ui.swing.script.TextEditor
 
markCompileStart() - Method in class org.scijava.ui.swing.script.TextEditor
 
markCompileStart(boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
MarkdownTextFormat - Class in org.scijava.plugins.text.markdown
Text format for Markdown.
MarkdownTextFormat() - Constructor for class org.scijava.plugins.text.markdown.MarkdownTextFormat
 
markLine() - Method in class org.scijava.ui.swing.script.ErrorHandler
 
markSupported() - Method in class org.scijava.io.handle.DataHandleInputStream
 
MAROON - Static variable in class org.scijava.util.Colors
 
matches(Group) - Method in class org.scijava.parsington.Group
Returns true iff the given group is the same as this one, in terms of token (lefthand symbol), terminator (righthand symbol) and precedence.
matches(int, TIntSet) - Method in class org.scijava.ui.behaviour.InputTrigger
 
matches(int, TIntSet, TIntSet) - Method in class org.scijava.ui.behaviour.InputTrigger
 
matchesSubset(int, TIntSet) - Method in class org.scijava.ui.behaviour.InputTrigger
 
matchesSubset(int, TIntSet, TIntSet) - Method in class org.scijava.ui.behaviour.InputTrigger
 
matchVersionedFilename(String) - Static method in class org.scijava.util.FileUtils
MATLABBindings - Class in org.scijava.plugins.scripting.matlab
A Bindings wrapper around MATLAB's local variables.
MATLABBindings() - Constructor for class org.scijava.plugins.scripting.matlab.MATLABBindings
 
MATLABCommands - Interface in org.scijava.plugins.scripting.matlab
A suite of commands for use in MATLAB.
MATLABControlUtils - Class in org.scijava.plugins.scripting.matlab
Utility class for maintaining a single entry point to the MATLAB executable.
MatlabHighlighter - Class in org.scijava.ui.swing.script.highliters
SyntaxHighliter for matlab scripts.
MatlabHighlighter() - Constructor for class org.scijava.ui.swing.script.highliters.MatlabHighlighter
 
MATLABOptions - Class in org.scijava.plugins.scripting.matlab
Allows the setting and persisting of MatlabProxyFactoryOptions configuration.
MATLABOptions() - Constructor for class org.scijava.plugins.scripting.matlab.MATLABOptions
 
MATLABScriptEngine - Class in org.scijava.plugins.scripting.matlab
A MATLAB interpreter.
MATLABScriptEngine(Context) - Constructor for class org.scijava.plugins.scripting.matlab.MATLABScriptEngine
 
MATLABScriptLanguage - Class in org.scijava.plugins.scripting.matlab
An adapter of the MATLAB interpreter to ImageJ's scripting interfaces.
MATLABScriptLanguage() - Constructor for class org.scijava.plugins.scripting.matlab.MATLABScriptLanguage
 
MATLABService - Interface in org.scijava.plugins.scripting.matlab
Service performing any utility operations required for MATLAB.
MatlabTokenMaker - Class in org.scijava.ui.swing.script.highliters
Scanner for the Matlab programming language.
MatlabTokenMaker() - Constructor for class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Constructor.
MatlabTokenMaker(Reader) - Constructor for class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Creates a new scanner There is also a java.io.InputStream version of this constructor.
MatlabTokenMaker(InputStream) - Constructor for class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Creates a new scanner.
MavenProject - Class in org.scijava.minimaven
This class represents a parsed pom.xml file.
MavenProject(BuildEnvironment, File, MavenProject) - Constructor for class org.scijava.minimaven.MavenProject
 
mavenRepository - Static variable in class org.scijava.minimaven.BuildEnvironment
 
MAX_FILES_SHOWN - Static variable in interface org.scijava.io.RecentFileService
 
MAX_SEARCH_SIZE - Static variable in interface org.scijava.io.handle.DataHandle
Default bound on bytes to search when searching through the stream.
maxCount - Variable in class org.scijava.ui.swing.script.RecentFilesMenuItem
Constant for maximum amount of recent files shown in recent files menu
maxLength - Variable in class org.scijava.ui.swing.script.RecentFilesMenuItem
Constant for maximum length of a filepath shown in recent files menu
maybeDownloadAutomatically(Coordinate, boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
 
md5(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the given byte array's MD5 checksum, or null if unavailable.
MEDIUMAQUAMARINE - Static variable in class org.scijava.util.Colors
 
MEDIUMBLUE - Static variable in class org.scijava.util.Colors
 
MEDIUMORCHID - Static variable in class org.scijava.util.Colors
 
MEDIUMPURPLE - Static variable in class org.scijava.util.Colors
 
MEDIUMSEAGREEN - Static variable in class org.scijava.util.Colors
 
MEDIUMSLATEBLUE - Static variable in class org.scijava.util.Colors
 
MEDIUMSPRINGGREEN - Static variable in class org.scijava.util.Colors
 
MEDIUMTURQUOISE - Static variable in class org.scijava.util.Colors
 
MEDIUMVIOLETRED - Static variable in class org.scijava.util.Colors
 
menu() - Method in class org.scijava.AbstractGateway
 
menu() - Method in interface org.scijava.Gateway
Gets this application context's MenuService.
Menu - Annotation Type in org.scijava.plugin
One item of a Plugin's menu path.
MenuConstants - Class in org.scijava.menu
Useful constants when defining application menu entries.
MenuCreator<T> - Interface in org.scijava.menu
A menu builder responsible for translating a ShadowMenu structure into a menu for a particular user interface.
MenuEntry - Class in org.scijava
One component of a menu path, for use with MenuPath.
MenuEntry(String) - Constructor for class org.scijava.MenuEntry
 
MenuEntry(String, double) - Constructor for class org.scijava.MenuEntry
 
MenuEntry(String, double, char, Accelerator, String) - Constructor for class org.scijava.MenuEntry
 
MenuEvent - Class in org.scijava.menu.event
An event indicating something has happened to the MenuService's ShadowMenu.
MenuEvent(ShadowMenu) - Constructor for class org.scijava.menu.event.MenuEvent
 
MenuEvent(Collection<? extends ShadowMenu>) - Constructor for class org.scijava.menu.event.MenuEvent
 
MenuPath - Class in org.scijava
A path in a hierarchical menu structure, for use with UIDetails.
MenuPath() - Constructor for class org.scijava.MenuPath
Creates an empty menu path.
MenuPath(Collection<? extends MenuEntry>) - Constructor for class org.scijava.MenuPath
Creates a menu path with the given entries.
MenuPath(String) - Constructor for class org.scijava.MenuPath
Creates a menu path with entries parsed from the given string.
MenuPath(String, String) - Constructor for class org.scijava.MenuPath
Creates a menu path with entries parsed from the given string, splitting on the specified separator.
MenuPath(String, String, boolean) - Constructor for class org.scijava.MenuPath
Creates a menu path with entries parsed from the given string, splitting on the specified separator, and trimming whitespace if indicated.
MenusAddedEvent - Class in org.scijava.menu.event
An event indicating one or more menu items have been added to the MenuService's ShadowMenu.
MenusAddedEvent(ShadowMenu) - Constructor for class org.scijava.menu.event.MenusAddedEvent
 
MenusAddedEvent(Collection<? extends ShadowMenu>) - Constructor for class org.scijava.menu.event.MenusAddedEvent
 
MenuScriptBatchProcessor - Class in org.scijava.batch
 
MenuScriptBatchProcessor() - Constructor for class org.scijava.batch.MenuScriptBatchProcessor
 
MenuService - Interface in org.scijava.menu
Interface for service that tracks the application's menu structure.
MenusRemovedEvent - Class in org.scijava.menu.event
An event indicating one or more menu items have been removed from the MenuService's ShadowMenu.
MenusRemovedEvent(ShadowMenu) - Constructor for class org.scijava.menu.event.MenusRemovedEvent
 
MenusRemovedEvent(Collection<? extends ShadowMenu>) - Constructor for class org.scijava.menu.event.MenusRemovedEvent
 
MenusUpdatedEvent - Class in org.scijava.menu.event
An event indicating one or more menu items have been adjusted in the MenuService's ShadowMenu.
MenusUpdatedEvent(ShadowMenu) - Constructor for class org.scijava.menu.event.MenusUpdatedEvent
 
MenusUpdatedEvent(Collection<? extends ShadowMenu>) - Constructor for class org.scijava.menu.event.MenusUpdatedEvent
 
merge(String, AbstractIndexWriter.StreamFactory) - Method in class org.scijava.annotations.AbstractIndexWriter
Merges an existing annotation index into the currently-generated one.
MersenneTwisterFast - Class in org.scijava.util
MersenneTwister and MersenneTwisterFast
MersenneTwisterFast() - Constructor for class org.scijava.util.MersenneTwisterFast
Constructor using the default seed.
MersenneTwisterFast(long) - Constructor for class org.scijava.util.MersenneTwisterFast
Constructor using a given seed.
MersenneTwisterFast(int[]) - Constructor for class org.scijava.util.MersenneTwisterFast
Constructor using an array of integers as seed.
messageLogged(LogMessage) - Method in class org.scijava.log.AbstractLogService
 
messageLogged(LogMessage) - Method in class org.scijava.log.DefaultLogger
 
messageLogged(LogMessage) - Method in interface org.scijava.log.LogListener
This method is normally called from many threads in parallel.
messageLogged(LogMessage) - Method in class org.scijava.log.slf4j.SLF4JLogService
 
messageLogged(LogMessage) - Method in class org.scijava.log.StderrLogService
 
messageLogged(LogMessage) - Method in class org.scijava.ui.swing.console.LoggingPanel
 
messageLogged(LogMessage) - Method in class org.scijava.ui.swing.console.LogRecorder
 
MessageWidget<U> - Interface in org.scijava.widget
Widget interface for message labels.
META_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
MetaInfCombiner - Class in org.scijava.util
Accumulates information from the class path to make META-INF/ files appropriate for an uber jar.
MetaInfCombiner() - Constructor for class org.scijava.util.MetaInfCombiner
 
metaPressed() - Method in class org.scijava.ui.behaviour.GlobalKeyEventDispatcher
 
method(Class<?>, String, Class<?>...) - Static method in class org.scijava.util.Types
Gets the method with the specified name and argument types, of the given class, or superclass thereof.
MethodCallException - Exception in org.scijava.module
An exception thrown when a reflective method execution fails.
MethodCallException() - Constructor for exception org.scijava.module.MethodCallException
 
MethodCallException(String) - Constructor for exception org.scijava.module.MethodCallException
 
MethodCallException(String, Throwable) - Constructor for exception org.scijava.module.MethodCallException
 
MethodCallException(Throwable) - Constructor for exception org.scijava.module.MethodCallException
 
methodParamTypes(Method, Class<?>) - Static method in class org.scijava.util.Types
As Types.fieldType(Field, Class), but with respect to the parameter types of the given Method rather than a Field.
MethodRef - Class in org.scijava.module
A reference to a Method, which can be invoked at will.
MethodRef(Class<?>, String, Class<?>...) - Constructor for class org.scijava.module.MethodRef
 
methodReturnType(Method, Class<?>) - Static method in class org.scijava.util.Types
As Types.fieldType(Field, Class), but with respect to the return type of the given Method rather than a Field.
MIDDLE_BUTTON - Static variable in class org.scijava.display.event.input.MsButtonEvent
 
MIDNIGHTBLUE - Static variable in class org.scijava.util.Colors
 
MIMEType - Class in org.scijava.ui.dnd
A Multipurpose Internet Mail Extension (MIME) type, as defined in RFC 2045 and 2046.
MIMEType(String) - Constructor for class org.scijava.ui.dnd.MIMEType
Constructs a new MIME type object from the given MIME type string.
MIMEType(String, Class<?>) - Constructor for class org.scijava.ui.dnd.MIMEType
Constructs a new MIME type object from the given MIME type string.
MiniMaven - Class in org.scijava.minimaven
The main-class for a simple and small drop-in replacement of Maven.
MiniMaven() - Constructor for class org.scijava.minimaven.MiniMaven
 
MINTCREAM - Static variable in class org.scijava.util.Colors
 
mirror(String) - Method in class org.scijava.util.MirrorWebsite
 
MirrorWebsite - Class in org.scijava.util
This program mirrors a given website.
MirrorWebsite(String, File, int, long) - Constructor for class org.scijava.util.MirrorWebsite
 
MiscUtils - Class in org.scijava.util
Miscellaneous utility methods.
MISTYROSE - Static variable in class org.scijava.util.Colors
 
MLC - Static variable in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
 
MLC - Static variable in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
 
MOCCASIN - Static variable in class org.scijava.util.Colors
 
mod(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mod(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mod(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mod(float, float) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mod(double, double) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mod(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mod(BigDecimal, BigDecimal) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mod(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.MOD operator.
MOD - Static variable in class org.scijava.parsington.Operators
 
MOD_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
ModalInternalFrame - Class in org.scijava.ui.swing.mdi
A modal internal frame, based on the Creating Modal Internal Frames JDC Tech Tip article.
ModalInternalFrame(String, JRootPane, Component, JOptionPane) - Constructor for class org.scijava.ui.swing.mdi.ModalInternalFrame
 
modAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
modAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.MOD_ASSIGN operator.
modCount() - Method in class org.scijava.ui.behaviour.BehaviourMap
 
modCount() - Method in class org.scijava.ui.behaviour.InputTriggerMap
 
modCount() - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
modCount() - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
modelChangedListeners() - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
Please, see the documentation of VisualEditorPanel.modelChangedListeners and VisualEditorPanel.configCommittedListeners to understand when these listeners are triggered.
modelToConfig() - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
Copies the settings in this editor to the InputTriggerConfig specified at construction.
modified() - Method in class org.scijava.ui.swing.script.EditorPane
Set the title according to whether the file was modified or not.
module() - Method in class org.scijava.AbstractGateway
 
module() - Method in interface org.scijava.Gateway
Gets this application context's ModuleService.
Module - Interface in org.scijava.module
A module is an encapsulated piece of functionality with inputs and outputs.
ModuleBatchProcessor<T> - Class in org.scijava.batch
 
ModuleBatchProcessor() - Constructor for class org.scijava.batch.ModuleBatchProcessor
 
moduleCalled - Variable in class org.scijava.script.InvocationObject
Deprecated.
 
ModuleCanceledEvent - Class in org.scijava.module.event
An event indicating a Module execution has been canceled.
ModuleCanceledEvent(Module) - Constructor for class org.scijava.module.event.ModuleCanceledEvent
 
ModuleCanceledEvent(Module, String) - Constructor for class org.scijava.module.event.ModuleCanceledEvent
 
ModuleCanceledException - Exception in org.scijava.module
An exception thrown when a module execution is canceled.
ModuleCanceledException() - Constructor for exception org.scijava.module.ModuleCanceledException
 
ModuleCanceledException(String) - Constructor for exception org.scijava.module.ModuleCanceledException
 
ModuleCanceledException(String, Throwable) - Constructor for exception org.scijava.module.ModuleCanceledException
 
ModuleCanceledException(Throwable) - Constructor for exception org.scijava.module.ModuleCanceledException
 
ModuleCodeRunner - Class in org.scijava.module.run
Runs the given Identifiable SciJava module.
ModuleCodeRunner() - Constructor for class org.scijava.module.run.ModuleCodeRunner
 
ModuleCommand - Class in org.scijava.command
A command which implements Module directly (rather than using the CommandModule adapter class).
ModuleCommand() - Constructor for class org.scijava.command.ModuleCommand
 
ModuleEvent - Class in org.scijava.module.event
An event indicating something has happened to a module.
ModuleEvent(Module) - Constructor for class org.scijava.module.event.ModuleEvent
 
ModuleException - Exception in org.scijava.module
An exception thrown when something goes wrong with a module.
ModuleException() - Constructor for exception org.scijava.module.ModuleException
 
ModuleException(String) - Constructor for exception org.scijava.module.ModuleException
 
ModuleException(String, Throwable) - Constructor for exception org.scijava.module.ModuleException
 
ModuleException(Throwable) - Constructor for exception org.scijava.module.ModuleException
 
ModuleExecutedEvent - Class in org.scijava.module.event
An event indicating a module has just been executed.
ModuleExecutedEvent(Module) - Constructor for class org.scijava.module.event.ModuleExecutedEvent
 
ModuleExecutingEvent - Class in org.scijava.module.event
An event indicating a module is about to be executed.
ModuleExecutingEvent(Module) - Constructor for class org.scijava.module.event.ModuleExecutingEvent
 
ModuleExecutionEvent - Class in org.scijava.module.event
An event relating to execution of a Module.
ModuleExecutionEvent(Module) - Constructor for class org.scijava.module.event.ModuleExecutionEvent
 
ModuleFinishedEvent - Class in org.scijava.module.event
An event indicating a module execution has been completed.
ModuleFinishedEvent(Module) - Constructor for class org.scijava.module.event.ModuleFinishedEvent
 
ModuleIndex - Class in org.scijava.module
Data structure for managing registered modules.
ModuleIndex() - Constructor for class org.scijava.module.ModuleIndex
 
ModuleInfo - Interface in org.scijava.module
A ModuleInfo object encapsulates metadata about a particular Module (but not a specific instance of it).
moduleItem() - Method in class org.scijava.batch.input.BatchInput
 
ModuleItem<T> - Interface in org.scijava.module
A ModuleItem represents metadata about one input or output of a module.
ModulePostprocessEvent - Class in org.scijava.module.event
An event indicating a ModulePostprocessor has been invoked as part of a module execution.
ModulePostprocessEvent(Module, ModulePostprocessor) - Constructor for class org.scijava.module.event.ModulePostprocessEvent
 
ModulePostprocessor - Interface in org.scijava.module.process
A module postprocessor defines a step that occurs immediately following the actual execution of a Module.
ModulePreprocessEvent - Class in org.scijava.module.event
An event indicating a ModulePreprocessor has been invoked as part of a module execution.
ModulePreprocessEvent(Module, ModulePreprocessor) - Constructor for class org.scijava.module.event.ModulePreprocessEvent
 
ModulePreprocessor - Interface in org.scijava.module.process
A module preprocessor defines a step that occurs just prior to the actual execution of a Module.
ModuleProcessEvent - Class in org.scijava.module.event
An event indicating a ModuleProcessor has been invoked as part of a module execution.
ModuleProcessEvent(Module, ModuleProcessor) - Constructor for class org.scijava.module.event.ModuleProcessEvent
 
ModuleProcessor - Interface in org.scijava.module.process
A module processor defines some sort of processing that occurs on a module instance, typically immediately preceding (see ModulePreprocessor) or following (see ModulePostprocessor) the module execution.
ModuleRunner - Class in org.scijava.module
Helper class for executing a Module, including pre- and post-processing and event notification.
ModuleRunner(Context, Module, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>) - Constructor for class org.scijava.module.ModuleRunner
 
modules - Variable in class org.scijava.minimaven.MavenProject
 
ModulesAddedEvent - Class in org.scijava.module.event
An event indicating one or more modules have been added to the ModuleService.
ModulesAddedEvent(ModuleInfo) - Constructor for class org.scijava.module.event.ModulesAddedEvent
 
ModulesAddedEvent(Collection<? extends ModuleInfo>) - Constructor for class org.scijava.module.event.ModulesAddedEvent
 
ModuleSearcher - Class in org.scijava.search.module
Searcher plugin for SciJava modules.
ModuleSearcher() - Constructor for class org.scijava.search.module.ModuleSearcher
 
ModuleSearchResult - Class in org.scijava.search.module
Search result for the ModuleSearcher.
ModuleSearchResult(ModuleInfo, String) - Constructor for class org.scijava.search.module.ModuleSearchResult
 
moduleService() - Method in interface org.scijava.command.CommandService
 
moduleService() - Method in class org.scijava.command.DefaultCommandService
 
moduleService - Variable in class org.scijava.command.DynamicCommand
 
ModuleService - Interface in org.scijava.module
Interface for service that tracks and executes available modules.
ModulesListEvent - Class in org.scijava.module.event
An event indicating something has happened to the list of plugins registered with the ModuleService.
ModulesListEvent(ModuleInfo) - Constructor for class org.scijava.module.event.ModulesListEvent
 
ModulesListEvent(Collection<? extends ModuleInfo>) - Constructor for class org.scijava.module.event.ModulesListEvent
 
ModulesRemovedEvent - Class in org.scijava.module.event
An event indicating one or more modules have been removed from the ModuleService.
ModulesRemovedEvent(ModuleInfo) - Constructor for class org.scijava.module.event.ModulesRemovedEvent
 
ModulesRemovedEvent(Collection<? extends ModuleInfo>) - Constructor for class org.scijava.module.event.ModulesRemovedEvent
 
ModuleStartedEvent - Class in org.scijava.module.event
An event indicating a module execution has begun.
ModuleStartedEvent(Module) - Constructor for class org.scijava.module.event.ModuleStartedEvent
 
ModulesUpdatedEvent - Class in org.scijava.module.event
An event indicating one or more module details have been updated.
ModulesUpdatedEvent(ModuleInfo) - Constructor for class org.scijava.module.event.ModulesUpdatedEvent
 
ModulesUpdatedEvent(Collection<? extends ModuleInfo>) - Constructor for class org.scijava.module.event.ModulesUpdatedEvent
 
MORE_INPUT_PENDING - Static variable in interface org.scijava.script.ScriptInterpreter
A special object returned by ScriptInterpreter.interpret(String) when the interpreter is expecting additional input before finishing the evaluation.
MouseAndKeyHandler - Class in org.scijava.ui.behaviour
 
MouseAndKeyHandler() - Constructor for class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mouseClicked(MouseEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
mouseClicked(MouseEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mouseClicked(MouseEvent) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
MouseCursor - Enum in org.scijava.input
A UI-independent enumeration of mouse cursors.
mouseDragged(MouseEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
mouseDragged(MouseEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mouseEntered(MouseEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
mouseEntered(MouseEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mouseEntered(MouseEvent) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
mouseExited(MouseEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
mouseExited(MouseEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mouseExited(MouseEvent) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
mouseMoved(MouseEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
mouseMoved(MouseEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mousePressed(MouseEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
mousePressed(MouseEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mousePressed(MouseEvent) - Method in class org.scijava.ui.swing.StaticSwingUtils.PopperUpper
 
mousePressed(MouseEvent) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
mouseReleased(MouseEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
mouseReleased(MouseEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mouseReleased(MouseEvent) - Method in class org.scijava.ui.swing.StaticSwingUtils.PopperUpper
 
mouseReleased(MouseEvent) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
mouseWheelMoved(MouseWheelEvent) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
 
mouseWheelMoved(MouseWheelEvent) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
mouseWheelMoved(MouseWheelEvent) - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
MsButtonEvent - Class in org.scijava.display.event.input
An event indicating mouse button activity in a display.
MsButtonEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsButtonEvent
 
MsClickedEvent - Class in org.scijava.display.event.input
An event indicating a mouse button was clicked in a display.
MsClickedEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsClickedEvent
 
MsDraggedEvent - Class in org.scijava.display.event.input
An event indicating a mouse was dragged in a display.
MsDraggedEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsDraggedEvent
 
MsEnteredEvent - Class in org.scijava.display.event.input
An event indicating a mouse cursor entered a display.
MsEnteredEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.MsEnteredEvent
 
MsEvent - Class in org.scijava.display.event.input
An event indicating mouse activity in a display.
MsEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.MsEvent
 
MsExitedEvent - Class in org.scijava.display.event.input
An event indicating a mouse cursor exited a display.
MsExitedEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.MsExitedEvent
 
MsMovedEvent - Class in org.scijava.display.event.input
An event indicating a mouse was moved in a display.
MsMovedEvent(Display<?>, InputModifiers, int, int) - Constructor for class org.scijava.display.event.input.MsMovedEvent
 
MsPressedEvent - Class in org.scijava.display.event.input
An event indicating a mouse button was pressed in a display.
MsPressedEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsPressedEvent
 
MsReleasedEvent - Class in org.scijava.display.event.input
An event indicating a mouse button was released in a display.
MsReleasedEvent(Display<?>, InputModifiers, int, int, int, int, boolean) - Constructor for class org.scijava.display.event.input.MsReleasedEvent
 
MsWheelEvent - Class in org.scijava.display.event.input
An event indicating a mouse wheel was moved in a display.
MsWheelEvent(Display<?>, InputModifiers, int, int, int) - Constructor for class org.scijava.display.event.input.MsWheelEvent
 
mul(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mul(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mul(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mul(float, float) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mul(double, double) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mul(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mul(BigDecimal, BigDecimal) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
mul(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.MUL operator.
MUL - Static variable in class org.scijava.parsington.Operators
 
MUL_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
mulAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
mulAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.MUL_ASSIGN operator.
MultiOutputStream - Class in org.scijava.console
A MultiOutputStream is a collection of constituent OutputStream objects, to which all output is forwarded.
MultiOutputStream(OutputStream...) - Constructor for class org.scijava.console.MultiOutputStream
Forwards output to a list of output streams.
MultiPrintStream - Class in org.scijava.console
MultiPrintStream(OutputStream) - Constructor for class org.scijava.console.MultiPrintStream
 
multiProjectRoots - Variable in class org.scijava.minimaven.BuildEnvironment
 
MultiWriteHandle - Class in org.scijava.download
DataHandle plugin for writing to multiple DataHandles.
MultiWriteHandle(DataHandle<?>...) - Constructor for class org.scijava.download.MultiWriteHandle
 
MutableModule - Interface in org.scijava.module
Module extension allowing manipulation of its metadata.
MutableModuleInfo - Interface in org.scijava.module
ModuleInfo extension allowing manipulation of its metadata.
MutableModuleItem<T> - Interface in org.scijava.module
ModuleItem extension allowing manipulation of its metadata.
MxSysInfo - Class in org.scijava.nativelib
 
MxSysInfo() - Constructor for class org.scijava.nativelib.MxSysInfo
 

N

NAME - Static variable in class org.scijava.app.SciJavaApp
 
name() - Method in class org.scijava.log.LogSource
Returns the last entry in the list of strings.
name() - Method in interface org.scijava.parse.Item
Gets the name of the item, or null if unnamed (i.e., raw value with no equals sign).
name() - Method in class org.scijava.search.classes.ClassSearchResult
 
name() - Method in class org.scijava.search.module.ModuleSearchResult
 
name() - Method in interface org.scijava.search.SearchResult
Title of the search result, intended for detailed display.
name() - Method in class org.scijava.search.snippet.SnippetSearchResult
 
name() - Method in class org.scijava.search.template.TemplateSearchResult
 
name() - Method in class org.scijava.search.web.WebSearchResult
 
NAME - Static variable in class org.scijava.ui.awt.AWTUI
 
name() - Method in class org.scijava.ui.behaviour.util.AbstractNamedAction
 
name() - Method in class org.scijava.ui.behaviour.util.AbstractNamedBehaviour
 
NAME - Static variable in class org.scijava.ui.headless.HeadlessUI
 
NAME - Static variable in class org.scijava.ui.headlessUI.HeadlessUI
Deprecated.
Use HeadlessUI.NAME instead.
NAME - Static variable in class org.scijava.ui.swing.mdi.SwingMdiUI
 
name - Variable in class org.scijava.ui.swing.script.autocompletion.ClassUtil.JarProperties
 
NAME - Static variable in interface org.scijava.ui.swing.SwingUI
 
name(Type) - Static method in class org.scijava.util.Types
Gets a string representation of the given type.
Named - Interface in org.scijava
Interface for things that have names.
namedAction(AbstractNamedAction, String...) - Method in class org.scijava.ui.behaviour.util.Actions
Install the specified AbstractNamedAction.
namedBehaviour(AbstractNamedBehaviour, String...) - Method in class org.scijava.ui.behaviour.util.Behaviours
 
NamedObjectIndex<E> - Class in org.scijava.object
An ObjectIndex where each object can have an associated name.
NamedObjectIndex(Class<E>) - Constructor for class org.scijava.object.NamedObjectIndex
 
nameSpace - Variable in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
NativeLibraryUtil - Class in org.scijava.nativelib
This class is a utility for loading native libraries.
NativeLibraryUtil() - Constructor for class org.scijava.nativelib.NativeLibraryUtil
 
NativeLibraryUtil.Architecture - Enum in org.scijava.nativelib
 
NativeLoader - Class in org.scijava.nativelib
Provides a means of loading JNI libraries which are stored within a jar.
NativeLoader() - Constructor for class org.scijava.nativelib.NativeLoader
 
NAVAJOWHITE - Static variable in class org.scijava.util.Colors
 
NAVY - Static variable in class org.scijava.util.Colors
 
neg(Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
neg(int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
neg(long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
neg(float) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
neg(double) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
neg(BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
neg(BigDecimal) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
neg(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.NEG operator.
NEG - Static variable in class org.scijava.parsington.Operators
 
newRoot() - Static method in class org.scijava.log.LogSource
Returns the root log source.
newTab(String, String) - Method in class org.scijava.ui.swing.script.TextEditor
Open a new tab with some content; the languageExtension is like ".java", ".py", etc.
newThread(Runnable) - Method in class org.scijava.thread.DefaultThreadService
 
next() - Method in class org.scijava.menu.ShadowMenuIterator
 
next() - Method in class org.scijava.util.IteratorPlus
 
next(int) - Method in class org.scijava.util.LastRecentlyUsed
Given the index of an entry, returns the index of the next newer entry.
nextBoolean() - Method in class org.scijava.util.MersenneTwisterFast
 
nextBoolean(float) - Method in class org.scijava.util.MersenneTwisterFast
This generates a coin flip with a probability probability of returning true, else returning false.
nextBoolean(double) - Method in class org.scijava.util.MersenneTwisterFast
This generates a coin flip with a probability probability of returning true, else returning false.
nextByte() - Method in class org.scijava.util.MersenneTwisterFast
 
nextBytes(byte[]) - Method in class org.scijava.util.MersenneTwisterFast
 
nextChar() - Method in class org.scijava.util.MersenneTwisterFast
 
nextDouble() - Method in class org.scijava.util.MersenneTwisterFast
Returns a random double in the half-open range from [0.0,1.0).
nextDouble(boolean, boolean) - Method in class org.scijava.util.MersenneTwisterFast
Returns a double in the range from 0.0 to 1.0, possibly inclusive of 0.0 and 1.0 themselves.
nextElement() - Method in class org.scijava.util.IteratorPlus
 
nextError(boolean) - Method in class org.scijava.ui.swing.script.ErrorHandler
 
nextError(boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
nextFloat() - Method in class org.scijava.util.MersenneTwisterFast
Returns a random float in the half-open range from [0.0f,1.0f).
nextFloat(boolean, boolean) - Method in class org.scijava.util.MersenneTwisterFast
Returns a float in the range from 0.0f to 1.0f, possibly inclusive of 0.0f and 1.0f themselves.
nextFramePosition() - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
nextGaussian() - Method in class org.scijava.util.MersenneTwisterFast
 
nextInt() - Method in class org.scijava.util.MersenneTwisterFast
 
nextInt(int) - Method in class org.scijava.util.MersenneTwisterFast
Returns an integer drawn uniformly from 0 to n-1.
nextLong() - Method in class org.scijava.util.MersenneTwisterFast
 
nextLong(long) - Method in class org.scijava.util.MersenneTwisterFast
Returns a long drawn uniformly from 0 to n-1.
nextShort() - Method in class org.scijava.util.MersenneTwisterFast
 
NIOService - Interface in org.scijava.io.nio
Interface for services that work with the java.nio package, particularly NIO ByteBuffer objects.
NO_CONSOLE_PROPERTY - Static variable in interface org.scijava.ui.console.ConsolePane
System property which, if set, suppresses the SciJava console window.
Node(String) - Constructor for class org.scijava.ui.swing.script.FileSystemTree.Node
 
NONE - Static variable in class org.scijava.log.LogLevel
 
NONE - Static variable in interface org.scijava.log.LogService
Deprecated.
NORMAL - Static variable in class org.scijava.Priority
Default priority for items.
normal - Variable in class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
NORMAL_PRIORITY - Static variable in class org.scijava.Priority
Deprecated.
Use Priority.NORMAL instead.
normalize(String) - Method in class org.scijava.minimaven.Coordinate
 
normalize(float[]) - Static method in class org.scijava.util.Bytes
Normalize the given float array so that the minimum value maps to 0.0 and the maximum value maps to 1.0.
normalize(double[]) - Static method in class org.scijava.util.Bytes
Normalize the given double array so that the minimum value maps to 0.0 and the maximum value maps to 1.0.
NoSuchServiceException - Exception in org.scijava
An exception thrown when a Gateway cannot obtain a Service.
NoSuchServiceException() - Constructor for exception org.scijava.NoSuchServiceException
 
NoSuchServiceException(String) - Constructor for exception org.scijava.NoSuchServiceException
 
NoSuchServiceException(String, Throwable) - Constructor for exception org.scijava.NoSuchServiceException
 
NoSuchServiceException(Throwable) - Constructor for exception org.scijava.NoSuchServiceException
 
not(Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
not(boolean) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
not(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.NOT operator.
NOT - Static variable in class org.scijava.parsington.Operators
 
NOT_EQUAL - Static variable in class org.scijava.parsington.Operators
 
NOT_MAPPED - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
notEqual(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
notEqual(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.NOT_EQUAL operator.
noteStructureChange() - Method in class org.scijava.display.AbstractDisplay
 
notifyListeners(OutputEvent) - Method in interface org.scijava.console.ConsoleService
Notifies listeners of output sent to stdout or stderr.
notifyListeners(OutputEvent) - Method in class org.scijava.console.DefaultConsoleService
 
notifyListeners(LogMessage) - Method in class org.scijava.log.AbstractLogService
 
notifyListeners(LogMessage) - Method in class org.scijava.log.DefaultLogger
 
notifyListeners(LogMessage) - Method in interface org.scijava.log.Logger
Broadcasts the given log message to the registered listeners.
NullContextException - Exception in org.scijava
An exception thrown when a Context is null, but shouldn't be.
NullContextException() - Constructor for exception org.scijava.NullContextException
 
NullContextException(String) - Constructor for exception org.scijava.NullContextException
 
NullContextException(String, Throwable) - Constructor for exception org.scijava.NullContextException
 
NullContextException(Throwable) - Constructor for exception org.scijava.NullContextException
 
NullConverter - Class in org.scijava.convert
Converter implementation for handling null values.
NullConverter() - Constructor for class org.scijava.convert.NullConverter
 
NullTableModel() - Constructor for class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.NullTableModel
 
nullValue(Class<T>) - Static method in class org.scijava.util.Types
Gets the "null" value for the given type.
NumberConverters - Class in org.scijava.convert
Converter plugins that convert from primitive numeric types to other primitive numeric types.
NumberConverters.BigIntegerToBigDecimalConverter - Class in org.scijava.convert
 
NumberConverters.ByteToBigDecimalConverter - Class in org.scijava.convert
 
NumberConverters.ByteToBigIntegerConverter - Class in org.scijava.convert
 
NumberConverters.ByteToDoubleConverter - Class in org.scijava.convert
 
NumberConverters.ByteToFloatConverter - Class in org.scijava.convert
 
NumberConverters.ByteToIntegerConverter - Class in org.scijava.convert
 
NumberConverters.ByteToLongConverter - Class in org.scijava.convert
 
NumberConverters.ByteToShortConverter - Class in org.scijava.convert
 
NumberConverters.DoubleToBigDecimalConverter - Class in org.scijava.convert
 
NumberConverters.FloatToBigDecimalConverter - Class in org.scijava.convert
 
NumberConverters.FloatToDoubleConverter - Class in org.scijava.convert
 
NumberConverters.IntegerToBigDecimalConverter - Class in org.scijava.convert
 
NumberConverters.IntegerToBigIntegerConverter - Class in org.scijava.convert
 
NumberConverters.IntegerToDoubleConverter - Class in org.scijava.convert
 
NumberConverters.IntegerToLongConverter - Class in org.scijava.convert
 
NumberConverters.LongToBigDecimalConverter - Class in org.scijava.convert
 
NumberConverters.LongToBigIntegerConverter - Class in org.scijava.convert
 
NumberConverters.ShortToBigDecimalConverter - Class in org.scijava.convert
 
NumberConverters.ShortToBigIntegerConverter - Class in org.scijava.convert
 
NumberConverters.ShortToDoubleConverter - Class in org.scijava.convert
 
NumberConverters.ShortToFloatConverter - Class in org.scijava.convert
 
NumberConverters.ShortToIntegerConverter - Class in org.scijava.convert
 
NumberConverters.ShortToLongConverter - Class in org.scijava.convert
 
NumberToBigDecimalConverter<N extends Number> - Class in org.scijava.convert
Converts numbers to BigDecimals.
NumberToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberToBigDecimalConverter
 
NumberToBigIntegerConverter<N extends Number> - Class in org.scijava.convert
Converts numbers to BigIntegers.
NumberToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberToBigIntegerConverter
 
NumberToDoubleConverter<N extends Number> - Class in org.scijava.convert
Converts numbers to doubles.
NumberToDoubleConverter() - Constructor for class org.scijava.convert.NumberToDoubleConverter
 
NumberToFloatConverter<N extends Number> - Class in org.scijava.convert
Converts numbers to floats.
NumberToFloatConverter() - Constructor for class org.scijava.convert.NumberToFloatConverter
 
NumberToIntegerConverter<N extends Number> - Class in org.scijava.convert
Converts numbers to integers.
NumberToIntegerConverter() - Constructor for class org.scijava.convert.NumberToIntegerConverter
 
NumberToLongConverter<N extends Number> - Class in org.scijava.convert
Converts numbers to longs.
NumberToLongConverter() - Constructor for class org.scijava.convert.NumberToLongConverter
 
NumberToNumberConverter<I extends Number,O extends Number> - Class in org.scijava.convert
Converts numbers to numbers, and throws IllegalArgumentException for null or invalid input.
NumberToNumberConverter() - Constructor for class org.scijava.convert.NumberToNumberConverter
 
NumberToShortConverter<N extends Number> - Class in org.scijava.convert
Converts numbers to shorts.
NumberToShortConverter() - Constructor for class org.scijava.convert.NumberToShortConverter
 
NumberUtils - Class in org.scijava.util
Useful methods for working with Number objects.
NumberWidget<U> - Interface in org.scijava.widget
Widget interface for number choosers.

O

object() - Method in class org.scijava.AbstractGateway
 
object() - Method in interface org.scijava.Gateway
Gets this application context's ObjectService.
ObjectArray<E> - Class in org.scijava.util
An extensible, generic array of Object elements.
ObjectArray(Class<E>) - Constructor for class org.scijava.util.ObjectArray
Constructs an extensible array of objects, backed by a fixed-size array.
ObjectArray(Class<E>, int) - Constructor for class org.scijava.util.ObjectArray
Constructs an extensible array of objects, backed by a fixed-size array.
ObjectArray(E[]) - Constructor for class org.scijava.util.ObjectArray
Constructs an extensible array of objects, backed by the given fixed-size array.
ObjectCreatedEvent - Class in org.scijava.object.event
An event indicating a new object has been created.
ObjectCreatedEvent(Object) - Constructor for class org.scijava.object.event.ObjectCreatedEvent
 
ObjectDeletedEvent - Class in org.scijava.object.event
An event indicating an object has been deleted.
ObjectDeletedEvent(Object) - Constructor for class org.scijava.object.event.ObjectDeletedEvent
 
ObjectEvent - Class in org.scijava.object.event
An event indicating something has happened to an object.
ObjectEvent(Object) - Constructor for class org.scijava.object.event.ObjectEvent
 
ObjectIndex<E> - Class in org.scijava.object
Data structure for managing lists of registered objects.
ObjectIndex(Class<E>) - Constructor for class org.scijava.object.ObjectIndex
 
ObjectModifiedEvent - Class in org.scijava.object.event
An event indicating an object has been modified somehow.
ObjectModifiedEvent(Object) - Constructor for class org.scijava.object.event.ObjectModifiedEvent
 
ObjectsAddedEvent - Class in org.scijava.object.event
An event indicating one or more objects have been added to the ObjectService.
ObjectsAddedEvent(Object) - Constructor for class org.scijava.object.event.ObjectsAddedEvent
 
ObjectsAddedEvent(Collection<?>) - Constructor for class org.scijava.object.event.ObjectsAddedEvent
 
objectService() - Method in class org.scijava.display.DefaultDisplayService
 
objectService() - Method in interface org.scijava.display.DisplayService
 
ObjectService - Interface in org.scijava.object
Interface for object management service.
objectService() - Method in class org.scijava.plugin.AbstractSingletonService
 
objectService() - Method in interface org.scijava.plugin.SingletonService
Gets the ObjectService upon which this service depends.
ObjectsListEvent - Class in org.scijava.object.event
An event indicating something has happened to the list of objects registered with the ObjectService.
ObjectsListEvent(Object) - Constructor for class org.scijava.object.event.ObjectsListEvent
 
ObjectsListEvent(Collection<?>) - Constructor for class org.scijava.object.event.ObjectsListEvent
 
ObjectsRemovedEvent - Class in org.scijava.object.event
An event indicating one or more objects have been removed from the ObjectService.
ObjectsRemovedEvent(Object) - Constructor for class org.scijava.object.event.ObjectsRemovedEvent
 
ObjectsRemovedEvent(Collection<?>) - Constructor for class org.scijava.object.event.ObjectsRemovedEvent
 
ObjectWidget<U> - Interface in org.scijava.widget
Widget interface for object selectors.
offlineMode - Variable in class org.scijava.minimaven.BuildEnvironment
 
offset() - Method in class org.scijava.download.MultiWriteHandle
 
offset() - Method in class org.scijava.io.handle.AbstractStreamHandle
 
offset() - Method in class org.scijava.io.handle.BytesHandle
 
offset() - Method in interface org.scijava.io.handle.DataHandle
Returns the current offset in the stream.
offset() - Method in class org.scijava.io.handle.DummyHandle
 
offset() - Method in class org.scijava.io.handle.FileHandle
 
offset() - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
offset() - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
OLDLACE - Static variable in class org.scijava.util.Colors
 
OLIVE - Static variable in class org.scijava.util.Colors
 
OLIVEDRAB - Static variable in class org.scijava.util.Colors
 
onDisplayActivatedEvent(DisplayActivatedEvent) - Method in interface org.scijava.ui.viewer.DisplayViewer
Handles a display activated event directed at this viewer's display.
onDisplayDeletedEvent(DisplayDeletedEvent) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
onDisplayDeletedEvent(DisplayDeletedEvent) - Method in interface org.scijava.ui.viewer.DisplayViewer
Removes the user interface when the display is deleted.
onDisplayUpdatedEvent(DisplayUpdatedEvent) - Method in interface org.scijava.ui.viewer.DisplayViewer
Synchronizes the user interface appearance with the display model.
onEvent(AppAboutEvent) - Method in class org.scijava.app.DefaultAppService
 
onEvent(AppPreferencesEvent) - Method in class org.scijava.app.DefaultAppService
 
onEvent(AppQuitEvent) - Method in class org.scijava.app.DefaultAppService
 
onEvent(PluginsRemovedEvent) - Method in class org.scijava.command.DefaultCommandService
 
onEvent(PluginsAddedEvent) - Method in class org.scijava.command.DefaultCommandService
 
onEvent(DisplayActivatedEvent) - Method in class org.scijava.command.InteractiveCommand
 
onEvent(WinClosedEvent) - Method in class org.scijava.display.DefaultDisplayService
Deletes the display when display window is closed.
onEvent(WinActivatedEvent) - Method in class org.scijava.display.DefaultDisplayService
Sets the display to active when its window is activated.
onEvent(DisplayDeletedEvent) - Method in class org.scijava.display.DefaultDisplayService
Removes a display from the display list when it is deleted
onEvent(SciJavaEvent) - Method in class org.scijava.event.DefaultEventHistory
 
onEvent(E) - Method in interface org.scijava.event.EventSubscriber
 
onEvent(KyPressedEvent) - Method in class org.scijava.input.DefaultInputService
 
onEvent(KyReleasedEvent) - Method in class org.scijava.input.DefaultInputService
 
onEvent(MsMovedEvent) - Method in class org.scijava.input.DefaultInputService
 
onEvent(MsExitedEvent) - Method in class org.scijava.input.DefaultInputService
 
onEvent(MsPressedEvent) - Method in class org.scijava.input.DefaultInputService
 
onEvent(MsReleasedEvent) - Method in class org.scijava.input.DefaultInputService
 
onEvent(DisplayDeletedEvent) - Method in class org.scijava.input.DefaultInputService
 
onEvent(IOEvent) - Method in class org.scijava.io.DefaultRecentFileService
 
onEvent(UIShownEvent) - Method in class org.scijava.java3d.DefaultJava3DService
Checks for obsolete Java 3D installations, warning when any are found.
onEvent(ModulesAddedEvent) - Method in class org.scijava.menu.DefaultMenuService
 
onEvent(ModulesRemovedEvent) - Method in class org.scijava.menu.DefaultMenuService
 
onEvent(ModulesUpdatedEvent) - Method in class org.scijava.menu.DefaultMenuService
 
onEvent(ObjectCreatedEvent) - Method in class org.scijava.object.DefaultObjectService
 
onEvent(ObjectDeletedEvent) - Method in class org.scijava.object.DefaultObjectService
 
onEvent(AppAboutEvent) - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
onEvent(AppPreferencesEvent) - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
onEvent(AppQuitEvent) - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
onEvent(AppMenusCreatedEvent) - Method in class org.scijava.platform.DefaultPlatformService
 
onEvent(PluginsRemovedEvent) - Method in class org.scijava.plugin.AbstractSingletonService
 
onEvent(PluginsAddedEvent) - Method in class org.scijava.plugin.AbstractSingletonService
 
onEvent(WinActivatedEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform
 
onEvent(KyPressedEvent) - Method in class org.scijava.tool.DefaultToolService
 
onEvent(KyReleasedEvent) - Method in class org.scijava.tool.DefaultToolService
 
onEvent(MsPressedEvent) - Method in class org.scijava.tool.DefaultToolService
 
onEvent(MsReleasedEvent) - Method in class org.scijava.tool.DefaultToolService
 
onEvent(MsClickedEvent) - Method in class org.scijava.tool.DefaultToolService
 
onEvent(MsMovedEvent) - Method in class org.scijava.tool.DefaultToolService
 
onEvent(MsDraggedEvent) - Method in class org.scijava.tool.DefaultToolService
 
onEvent(MsWheelEvent) - Method in class org.scijava.tool.DefaultToolService
 
onEvent(StatusEvent) - Method in class org.scijava.ui.awt.AWTStatusBar
 
onEvent(DisplayCreatedEvent) - Method in class org.scijava.ui.DefaultUIService
Called when a display is created.
onEvent(DisplayDeletedEvent) - Method in class org.scijava.ui.DefaultUIService
Called when a display is deleted.
onEvent(DisplayUpdatedEvent) - Method in class org.scijava.ui.DefaultUIService
Called when a display is updated.
onEvent(DisplayActivatedEvent) - Method in class org.scijava.ui.DefaultUIService
Called when a display is activated.
onEvent(AppQuitEvent) - Method in class org.scijava.ui.DefaultUIService
 
onEvent(StatusEvent) - Method in class org.scijava.ui.DefaultUIService
 
onEvent(DragEnterEvent) - Method in class org.scijava.ui.dnd.DefaultDragAndDropService
 
onEvent(DragExitEvent) - Method in class org.scijava.ui.dnd.DefaultDragAndDropService
 
onEvent(DragOverEvent) - Method in class org.scijava.ui.dnd.DefaultDragAndDropService
 
onEvent(DropEvent) - Method in class org.scijava.ui.dnd.DefaultDragAndDropService
 
onEvent(StatusEvent) - Method in class org.scijava.ui.swing.SwingStatusBar
 
onEvent(ToolActivatedEvent) - Method in class org.scijava.ui.swing.SwingToolBar
 
onEvent(ToolDeactivatedEvent) - Method in class org.scijava.ui.swing.SwingToolBar
 
onEvent(DisplayCreatedEvent) - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
onEvent(DisplayUpdatedEvent) - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
onEvent(UIShownEvent) - Method in class org.scijava.welcome.DefaultWelcomeService
Displays the welcome text when a UI is shown for the first time.
onKeyDown(KyPressedEvent) - Method in interface org.scijava.tool.Tool
Occurs when a key on the keyboard is pressed while the tool is active.
onKeyUp(KyReleasedEvent) - Method in interface org.scijava.tool.Tool
Occurs when a key on the keyboard is released while the tool is active.
onMouseClick(MsClickedEvent) - Method in interface org.scijava.tool.Tool
Occurs when a mouse button is double clicked while the tool is active.
onMouseDown(MsPressedEvent) - Method in interface org.scijava.tool.Tool
Occurs when a mouse button is pressed while the tool is active.
onMouseDrag(MsDraggedEvent) - Method in interface org.scijava.tool.Tool
Occurs when the mouse is dragged while the tool is active.
onMouseMove(MsMovedEvent) - Method in interface org.scijava.tool.Tool
Occurs when the mouse is moved while the tool is active.
onMouseUp(MsReleasedEvent) - Method in interface org.scijava.tool.Tool
Occurs when a mouse button is released while the tool is active.
onMouseWheel(MsWheelEvent) - Method in interface org.scijava.tool.Tool
Occurs when the mouse wheel is moved while the tool is active.
open(String) - Method in class org.scijava.io.AbstractIOPlugin
 
open(String) - Method in class org.scijava.io.AbstractTypedIOService
 
open(Location) - Method in class org.scijava.io.AbstractTypedIOService
 
open(String) - Method in class org.scijava.io.DefaultIOService
 
open(Location) - Method in class org.scijava.io.DefaultIOService
 
open(String) - Method in interface org.scijava.io.IOPlugin
Opens data from the given source.
open(Location) - Method in interface org.scijava.io.IOPlugin
Opens data from the given location.
open(String) - Method in interface org.scijava.io.IOService
Loads data from the given source.
open(Location) - Method in interface org.scijava.io.IOService
Loads data from the given location.
open(String) - Method in interface org.scijava.io.TypedIOService
Loads data from the given source.
open(Location) - Method in interface org.scijava.io.TypedIOService
Loads data from the given location.
open(URL) - Method in class org.scijava.platform.DefaultPlatform
Falls back to calling known browsers.
open(URL) - Method in class org.scijava.platform.DefaultPlatformService
 
open(URL) - Method in interface org.scijava.platform.Platform
 
open(URL) - Method in interface org.scijava.platform.PlatformService
Opens a URL in a platform-dependent way.
open(URL) - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform
 
open(URL) - Method in class org.scijava.plugins.platforms.windows.WindowsPlatform
 
open(Location) - Method in class org.scijava.script.io.ScriptIOPlugin
 
open(Location, TableIOOptions) - Method in class org.scijava.table.DefaultTableIOPlugin
 
open(String, TableIOOptions) - Method in class org.scijava.table.io.DefaultTableIOService
 
open(Location, TableIOOptions) - Method in class org.scijava.table.io.DefaultTableIOService
 
open(Location) - Method in interface org.scijava.table.io.TableIOPlugin
 
open(Location, TableIOOptions) - Method in interface org.scijava.table.io.TableIOPlugin
Opens data from the given source.
open(Location) - Method in interface org.scijava.table.io.TableIOService
 
open(String, TableIOOptions) - Method in interface org.scijava.table.io.TableIOService
 
open(Location, TableIOOptions) - Method in interface org.scijava.table.io.TableIOService
 
open(File) - Method in class org.scijava.text.DefaultTextService
 
open(Location) - Method in class org.scijava.text.io.TextIOPlugin
 
open(File) - Method in interface org.scijava.text.TextService
Reads the data from the given file into a string.
open(File) - Method in class org.scijava.ui.swing.script.EditorPane
Load editor contents from given file.
open(File) - Method in class org.scijava.ui.swing.script.TextEditor
 
OPEN_STYLE - Static variable in interface org.scijava.widget.FileWidget
Widget style for file opener dialogs.
OpenArgument - Class in org.scijava.io.console
Handles the --open command line argument.
OpenArgument() - Constructor for class org.scijava.io.console.OpenArgument
 
openClassOrPackageHelp(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
OpenFile - Class in org.scijava.plugins.commands.io
Opens the selected file.
OpenFile() - Constructor for class org.scijava.plugins.commands.io.OpenFile
 
openFiles(OpenFilesEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
openHelp(String) - Method in class org.scijava.ui.swing.script.MacroFunctions
 
openHelp(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
openHelp(String, boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
OpenInBrowserActionFactory - Class in org.scijava.search.web
This factory creates actions for opening web search results in a browser.
OpenInBrowserActionFactory() - Constructor for class org.scijava.search.web.OpenInBrowserActionFactory
 
openInGitweb(File, File, int) - Method in class org.scijava.ui.swing.script.FileFunctions
 
openInput(String) - Method in interface org.scijava.annotations.AbstractIndexWriter.StreamFactory
 
openLine() - Method in class org.scijava.util.TunePlayer
 
openOutput(String) - Method in interface org.scijava.annotations.AbstractIndexWriter.StreamFactory
 
Operator - Class in org.scijava.parsington
A mathematical operator is a special symbol or "verb" which defines a relation between "nouns" (i.e.: literals and variables).
Operator(String, int, Operator.Associativity, double) - Constructor for class org.scijava.parsington.Operator
 
Operator.Associativity - Enum in org.scijava.parsington
 
Operators - Class in org.scijava.parsington
A collection of standard Operators.
optional - Variable in class org.scijava.minimaven.Coordinate
 
Optional - Interface in org.scijava
A marker interface for optional SciJava components.
options() - Method in class org.scijava.AbstractGateway
 
options() - Method in interface org.scijava.Gateway
Gets this application context's OptionsService.
Options<T> - Interface in org.scijava.optional
 
options() - Static method in class org.scijava.table.io.TableIOOptions
 
OptionsEvent - Class in org.scijava.options.event
Fired when an OptionsPlugin has changed an option.
OptionsEvent(OptionsPlugin) - Constructor for class org.scijava.options.event.OptionsEvent
 
OptionsLookAndFeel - Class in org.scijava.ui.swing.options
Runs the Edit::Options::Look and Feel dialog.
OptionsLookAndFeel() - Constructor for class org.scijava.ui.swing.options.OptionsLookAndFeel
 
OptionsPlugin - Class in org.scijava.options
Base class for all options-oriented plugins.
OptionsPlugin() - Constructor for class org.scijava.options.OptionsPlugin
 
OptionsService - Interface in org.scijava.options
Interface for the options handling service.
OR_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
ORANGE - Static variable in class org.scijava.util.Colors
 
ORANGERED - Static variable in class org.scijava.util.Colors
 
orAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
orAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.OR_ASSIGN operator.
ORCHID - Static variable in class org.scijava.util.Colors
 
org.scijava - package org.scijava
 
org.scijava.annotations - package org.scijava.annotations
 
org.scijava.annotations.legacy - package org.scijava.annotations.legacy
 
org.scijava.app - package org.scijava.app
 
org.scijava.app.event - package org.scijava.app.event
 
org.scijava.batch - package org.scijava.batch
 
org.scijava.batch.input - package org.scijava.batch.input
 
org.scijava.cache - package org.scijava.cache
 
org.scijava.command - package org.scijava.command
 
org.scijava.command.console - package org.scijava.command.console
 
org.scijava.command.run - package org.scijava.command.run
 
org.scijava.config.logback - package org.scijava.config.logback
 
org.scijava.console - package org.scijava.console
 
org.scijava.convert - package org.scijava.convert
 
org.scijava.display - package org.scijava.display
 
org.scijava.display.event - package org.scijava.display.event
 
org.scijava.display.event.input - package org.scijava.display.event.input
 
org.scijava.display.event.window - package org.scijava.display.event.window
 
org.scijava.download - package org.scijava.download
 
org.scijava.event - package org.scijava.event
 
org.scijava.grab - package org.scijava.grab
 
org.scijava.grab.script.process - package org.scijava.grab.script.process
 
org.scijava.input - package org.scijava.input
 
org.scijava.io - package org.scijava.io
 
org.scijava.io.console - package org.scijava.io.console
 
org.scijava.io.event - package org.scijava.io.event
 
org.scijava.io.handle - package org.scijava.io.handle
 
org.scijava.io.http - package org.scijava.io.http
 
org.scijava.io.location - package org.scijava.io.location
 
org.scijava.io.nio - package org.scijava.io.nio
 
org.scijava.java3d - package org.scijava.java3d
 
org.scijava.log - package org.scijava.log
 
org.scijava.log.slf4j - package org.scijava.log.slf4j
 
org.scijava.main - package org.scijava.main
 
org.scijava.main.console - package org.scijava.main.console
 
org.scijava.main.run - package org.scijava.main.run
 
org.scijava.menu - package org.scijava.menu
 
org.scijava.menu.event - package org.scijava.menu.event
 
org.scijava.minimaven - package org.scijava.minimaven
 
org.scijava.module - package org.scijava.module
 
org.scijava.module.event - package org.scijava.module.event
 
org.scijava.module.process - package org.scijava.module.process
 
org.scijava.module.run - package org.scijava.module.run
 
org.scijava.nativelib - package org.scijava.nativelib
 
org.scijava.object - package org.scijava.object
 
org.scijava.object.event - package org.scijava.object.event
 
org.scijava.optional - package org.scijava.optional
Helpers for implementing optional parameters in a builder-like class.
org.scijava.options - package org.scijava.options
 
org.scijava.options.event - package org.scijava.options.event
 
org.scijava.parse - package org.scijava.parse
 
org.scijava.parsington - package org.scijava.parsington
 
org.scijava.parsington.eval - package org.scijava.parsington.eval
 
org.scijava.platform - package org.scijava.platform
 
org.scijava.platform.event - package org.scijava.platform.event
 
org.scijava.plugin - package org.scijava.plugin
 
org.scijava.plugin.event - package org.scijava.plugin.event
 
org.scijava.plugins.commands.debug - package org.scijava.plugins.commands.debug
 
org.scijava.plugins.commands.display - package org.scijava.plugins.commands.display
 
org.scijava.plugins.commands.io - package org.scijava.plugins.commands.io
 
org.scijava.plugins.commands.script - package org.scijava.plugins.commands.script
 
org.scijava.plugins.platforms.macos - package org.scijava.plugins.platforms.macos
 
org.scijava.plugins.platforms.windows - package org.scijava.plugins.platforms.windows
 
org.scijava.plugins.scripting.beanshell - package org.scijava.plugins.scripting.beanshell
 
org.scijava.plugins.scripting.clojure - package org.scijava.plugins.scripting.clojure
 
org.scijava.plugins.scripting.groovy - package org.scijava.plugins.scripting.groovy
 
org.scijava.plugins.scripting.java - package org.scijava.plugins.scripting.java
 
org.scijava.plugins.scripting.javascript - package org.scijava.plugins.scripting.javascript
 
org.scijava.plugins.scripting.jruby - package org.scijava.plugins.scripting.jruby
 
org.scijava.plugins.scripting.jython - package org.scijava.plugins.scripting.jython
 
org.scijava.plugins.scripting.kotlin - package org.scijava.plugins.scripting.kotlin
 
org.scijava.plugins.scripting.matlab - package org.scijava.plugins.scripting.matlab
 
org.scijava.plugins.scripting.renjin - package org.scijava.plugins.scripting.renjin
 
org.scijava.plugins.scripting.scala - package org.scijava.plugins.scripting.scala
 
org.scijava.plugins.text.markdown - package org.scijava.plugins.text.markdown
 
org.scijava.plugins.text.plain - package org.scijava.plugins.text.plain
 
org.scijava.prefs - package org.scijava.prefs
 
org.scijava.run - package org.scijava.run
 
org.scijava.run.console - package org.scijava.run.console
 
org.scijava.script - package org.scijava.script
 
org.scijava.script.console - package org.scijava.script.console
 
org.scijava.script.io - package org.scijava.script.io
 
org.scijava.script.process - package org.scijava.script.process
 
org.scijava.script.run - package org.scijava.script.run
 
org.scijava.search - package org.scijava.search
 
org.scijava.search.classes - package org.scijava.search.classes
 
org.scijava.search.javadoc - package org.scijava.search.javadoc
 
org.scijava.search.module - package org.scijava.search.module
 
org.scijava.search.snippet - package org.scijava.search.snippet
 
org.scijava.search.template - package org.scijava.search.template
 
org.scijava.search.web - package org.scijava.search.web
 
org.scijava.service - package org.scijava.service
 
org.scijava.service.event - package org.scijava.service.event
 
org.scijava.startup - package org.scijava.startup
 
org.scijava.swing.checkboxtree - package org.scijava.swing.checkboxtree
 
org.scijava.table - package org.scijava.table
 
org.scijava.table.io - package org.scijava.table.io
 
org.scijava.table.process - package org.scijava.table.process
 
org.scijava.task - package org.scijava.task
 
org.scijava.task.event - package org.scijava.task.event
 
org.scijava.test - package org.scijava.test
 
org.scijava.text - package org.scijava.text
 
org.scijava.text.io - package org.scijava.text.io
 
org.scijava.thread - package org.scijava.thread
 
org.scijava.tool - package org.scijava.tool
 
org.scijava.tool.event - package org.scijava.tool.event
 
org.scijava.ui - package org.scijava.ui
 
org.scijava.ui.awt - package org.scijava.ui.awt
 
org.scijava.ui.awt.menu - package org.scijava.ui.awt.menu
 
org.scijava.ui.awt.widget - package org.scijava.ui.awt.widget
 
org.scijava.ui.behaviour - package org.scijava.ui.behaviour
Configurable-keys
org.scijava.ui.behaviour.io - package org.scijava.ui.behaviour.io
 
org.scijava.ui.behaviour.io.gui - package org.scijava.ui.behaviour.io.gui
 
org.scijava.ui.behaviour.io.json - package org.scijava.ui.behaviour.io.json
 
org.scijava.ui.behaviour.io.yaml - package org.scijava.ui.behaviour.io.yaml
 
org.scijava.ui.behaviour.util - package org.scijava.ui.behaviour.util
 
org.scijava.ui.console - package org.scijava.ui.console
 
org.scijava.ui.dnd - package org.scijava.ui.dnd
 
org.scijava.ui.dnd.event - package org.scijava.ui.dnd.event
 
org.scijava.ui.event - package org.scijava.ui.event
 
org.scijava.ui.headless - package org.scijava.ui.headless
 
org.scijava.ui.headlessUI - package org.scijava.ui.headlessUI
 
org.scijava.ui.swing - package org.scijava.ui.swing
 
org.scijava.ui.swing.commands - package org.scijava.ui.swing.commands
 
org.scijava.ui.swing.console - package org.scijava.ui.swing.console
 
org.scijava.ui.swing.mdi - package org.scijava.ui.swing.mdi
 
org.scijava.ui.swing.mdi.viewer - package org.scijava.ui.swing.mdi.viewer
 
org.scijava.ui.swing.menu - package org.scijava.ui.swing.menu
 
org.scijava.ui.swing.options - package org.scijava.ui.swing.options
 
org.scijava.ui.swing.script - package org.scijava.ui.swing.script
 
org.scijava.ui.swing.script.autocompletion - package org.scijava.ui.swing.script.autocompletion
 
org.scijava.ui.swing.script.commands - package org.scijava.ui.swing.script.commands
 
org.scijava.ui.swing.script.highliters - package org.scijava.ui.swing.script.highliters
 
org.scijava.ui.swing.script.languagesupport - package org.scijava.ui.swing.script.languagesupport
 
org.scijava.ui.swing.sdi - package org.scijava.ui.swing.sdi
 
org.scijava.ui.swing.search - package org.scijava.ui.swing.search
 
org.scijava.ui.swing.viewer - package org.scijava.ui.swing.viewer
 
org.scijava.ui.swing.viewer.table - package org.scijava.ui.swing.viewer.table
 
org.scijava.ui.swing.viewer.text - package org.scijava.ui.swing.viewer.text
 
org.scijava.ui.swing.widget - package org.scijava.ui.swing.widget
 
org.scijava.ui.viewer - package org.scijava.ui.viewer
 
org.scijava.ui.viewer.table - package org.scijava.ui.viewer.table
 
org.scijava.ui.viewer.text - package org.scijava.ui.viewer.text
 
org.scijava.util - package org.scijava.util
 
org.scijava.welcome - package org.scijava.welcome
 
org.scijava.welcome.event - package org.scijava.welcome.event
 
org.scijava.widget - package org.scijava.widget
 
osArch() - Method in interface org.scijava.platform.Platform
Operating system architecture to match.
osName() - Method in interface org.scijava.platform.Platform
Operating system name to match.
osName() - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform
 
osName() - Method in class org.scijava.plugins.platforms.windows.WindowsPlatform
 
osName() - Static method in class org.scijava.util.PlatformUtils
Gets the name of the operating system.
osVersion() - Method in interface org.scijava.platform.Platform
Minimum required operating system version.
out() - Method in interface org.scijava.io.handle.StreamHandle
Gets an output stream for writing data, positioned at the current offset.
out() - Method in class org.scijava.io.http.HTTPHandle
 
out - Variable in class org.scijava.minimaven.JavaCompiler
 
out - Variable in class org.scijava.util.ReadInto
 
OutputEvent - Class in org.scijava.console
An event indicating output occurred on stdout or stderr.
OutputEvent(Context, OutputEvent.Source, String, boolean) - Constructor for class org.scijava.console.OutputEvent
Creates a new output event.
OutputEvent.Source - Enum in org.scijava.console
Possible output sources.
outputList() - Method in class org.scijava.module.AbstractModuleInfo
Gets AbstractModuleInfo.outputList, initializing if needed.
OutputListener - Interface in org.scijava.console
Listener for output on stdout or stderr.
outputMap() - Method in class org.scijava.module.AbstractModuleInfo
Gets AbstractModuleInfo.inputList, initializing if needed.
outputOccurred(OutputEvent) - Method in interface org.scijava.console.OutputListener
Method called when output occurs on stdout or stderr.
outputOccurred(OutputEvent) - Method in class org.scijava.ui.console.AbstractConsolePane
 
outputOccurred(OutputEvent) - Method in class org.scijava.ui.swing.console.ConsolePanel
 
OutputPane - Class in org.scijava.ui.swing.script
An output area for the scripting user interfaces.
OutputPane(LogService) - Constructor for class org.scijava.ui.swing.script.OutputPane
 
outputs() - Method in class org.scijava.command.CommandInfo
 
outputs() - Method in class org.scijava.module.AbstractModuleInfo
 
outputs() - Method in interface org.scijava.module.ModuleInfo
Gets the list of output items.

P

pack() - Method in interface org.scijava.ui.viewer.DisplayWindow
 
packaging - Variable in class org.scijava.minimaven.MavenProject
 
padEnd(String, int) - Static method in class org.scijava.util.StringUtils
padEnd(String, int, char) - Static method in class org.scijava.util.StringUtils
Adds characters to the end of the String to make it the given length
padStart(String, int) - Static method in class org.scijava.util.StringUtils
padStart(String, int, char) - Static method in class org.scijava.util.StringUtils
Adds characters to the start of the String to make it the given length
paint(Graphics) - Method in class org.scijava.ui.awt.AWTStatusBar
 
paintBorder(Component, Graphics, int, int, int, int) - Method in class org.scijava.ui.behaviour.io.gui.RoundBorder
 
PALEGOLDENROD - Static variable in class org.scijava.util.Colors
 
PALEGREEN - Static variable in class org.scijava.util.Colors
 
PALETURQUOISE - Static variable in class org.scijava.util.Colors
 
PALEVIOLETRED - Static variable in class org.scijava.util.Colors
 
PAPAYAWHIP - Static variable in class org.scijava.util.Colors
 
param - Variable in class org.scijava.script.ParameterObject
Deprecated.
 
param(Type, Class<?>, int) - Static method in class org.scijava.util.Types
Gets the given type's nth type parameter of the specified class.
ParamAssignOrder - Class in org.scijava.plugins.commands.debug
An illustration of the order in which command parameter assignment occurs.
ParamAssignOrder() - Constructor for class org.scijava.plugins.commands.debug.ParamAssignOrder
 
Parameter - Annotation Type in org.scijava.plugin
An annotation for indicating a field is an input or output parameter.
parameterize(Class<?>, Type...) - Static method in class org.scijava.util.Types
Creates a new ParameterizedType of the given class together with the specified type arguments.
parameterize(Class<?>, Map<TypeVariable<?>, Type>) - Static method in class org.scijava.util.Types
Create a parameterized type instance.
parameterizeWithOwner(Type, Class<?>, Type...) - Static method in class org.scijava.util.Types
Creates a new ParameterizedType of the given class together with the specified type arguments.
ParameterObject - Class in org.scijava.script
Deprecated.
To be removed in SciJava Common 3.0.0.
ParameterObject(String, Class<?>, Object) - Constructor for class org.scijava.script.ParameterObject
Deprecated.
 
parameterObjects - Variable in class org.scijava.script.InvocationObject
Deprecated.
 
ParameterScriptProcessor - Class in org.scijava.script.process
A ScriptProcessor which parses the script's input and output parameters from the script header.
ParameterScriptProcessor() - Constructor for class org.scijava.script.process.ParameterScriptProcessor
 
parens(Object[]) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
parens(Object[]) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.PARENS operator.
PARENS - Static variable in class org.scijava.parsington.Operators
 
parent() - Method in interface org.scijava.io.location.BrowsableLocation
Obtains a location pointing to the parent directory of this one.
parent() - Method in class org.scijava.io.location.FileLocation
 
parent() - Method in class org.scijava.log.LogSource
Gets the parent of this source, or null if the source is a root.
parent - Variable in class org.scijava.minimaven.MavenProject
 
parent - Variable in class org.scijava.ui.swing.script.FileFunctions
 
parent() - Method in class org.scijava.util.DefaultTreeNode
 
parent() - Method in interface org.scijava.util.TreeNode
Gets the parent of this node.
parentCoordinate - Variable in class org.scijava.minimaven.MavenProject
 
parse(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
parse(File, MavenProject) - Method in class org.scijava.minimaven.BuildEnvironment
 
parse(File, MavenProject, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
parse(InputStream, File, MavenProject, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
parse(File) - Static method in class org.scijava.minimaven.SnapshotPOMHandler
 
parse(InputStream) - Static method in class org.scijava.minimaven.SnapshotPOMHandler
 
parse(File) - Static method in class org.scijava.minimaven.VersionPOMHandler
 
parse(InputStream) - Static method in class org.scijava.minimaven.VersionPOMHandler
 
parse(String, boolean) - Method in class org.scijava.parse.DefaultParseService
 
parse(String) - Method in interface org.scijava.parse.ParseService
Parses a comma-delimited list of data elements.
parse(String, boolean) - Method in interface org.scijava.parse.ParseService
Parses a comma-delimited list of data elements.
parseBinary(CharSequence) - Static method in class org.scijava.parsington.Literals
Parses a binary literal (e.g., 0b010101000011).
parseBinary(CharSequence, Position) - Static method in class org.scijava.parsington.Literals
Parses a binary literal (e.g., 0b010101000011).
parseBoolean(CharSequence) - Static method in class org.scijava.parsington.Literals
Parses a boolean literal (i.e., true and false).
parseBoolean(CharSequence, Position) - Static method in class org.scijava.parsington.Literals
Parses a boolean literal (i.e., true and false).
parseDecimal(CharSequence) - Static method in class org.scijava.parsington.Literals
Parses a decimal literal (integer or otherwise; e.g., 1234567890, 1234.0987 or 1.2e34).
parseDecimal(CharSequence, Position) - Static method in class org.scijava.parsington.Literals
Parses a decimal literal (e.g., 1234.0987 or 1.2e34).
parseHex(CharSequence) - Static method in class org.scijava.parsington.Literals
Parses a hexidecimal literal (e.g., 0xfedcba9876543210).
parseHex(CharSequence, Position) - Static method in class org.scijava.parsington.Literals
Parses a hexidecimal literal (e.g., 0xfedcba9876543210).
parseLiteral(CharSequence) - Static method in class org.scijava.parsington.Literals
Parses a literal of any known type (booleans, strings and numbers).
parseLiteral(CharSequence, Position) - Static method in class org.scijava.parsington.Literals
Parses a literal of any known type (booleans, strings and numbers).
parseMultiProjects() - Method in class org.scijava.minimaven.BuildEnvironment
 
parseNumber(CharSequence) - Static method in class org.scijava.parsington.Literals
Parses a numeric literal of any known type.
parseNumber(CharSequence, Position) - Static method in class org.scijava.parsington.Literals
Parses a numeric literal of any known type.
parseOctal(CharSequence) - Static method in class org.scijava.parsington.Literals
Parses an octal literal (e.g., 01234567).
parseOctal(CharSequence, Position) - Static method in class org.scijava.parsington.Literals
Parses an octal literal (e.g., 01234567).
parseParameters() - Method in class org.scijava.module.AbstractModuleInfo
Parses input and output parameters.
parseParameters() - Method in class org.scijava.script.ScriptInfo
Performs script processing.
parseParameterString(String) - Static method in class org.scijava.console.ConsoleUtils
Deprecated.
Use ParseService instead.
parseParameterString(String, ModuleInfo) - Static method in class org.scijava.console.ConsoleUtils
Deprecated.
Use ParseService instead.
parseParameterString(String, LogService) - Static method in class org.scijava.console.ConsoleUtils
Deprecated.
Use ParseService instead.
parseParameterString(String, ModuleInfo, LogService) - Static method in class org.scijava.console.ConsoleUtils
Deprecated.
Use ParseService instead.
parsePostfix(String) - Method in class org.scijava.parsington.ExpressionParser
Parses the given mathematical expression into a queue in Reverse Polish notation (i.e., postfix notation).
parser() - Method in class org.scijava.table.io.ColumnTableIOOptions.Values
 
parser(Function<String, ?>) - Method in class org.scijava.table.io.TableIOOptions
 
parser() - Method in class org.scijava.table.io.TableIOOptions.Values
 
parser - Variable in class org.scijava.ui.swing.script.ErrorHandler
 
ParseService - Interface in org.scijava.parse
Interface for service that parses strings.
parseString(CharSequence) - Static method in class org.scijava.parsington.Literals
Parses a string literal which is enclosed in single or double quotes.
parseString(CharSequence, Position) - Static method in class org.scijava.parsington.Literals
Parses a string literal which is enclosed in single or double quotes.
parseTree(String) - Method in class org.scijava.parsington.ExpressionParser
Parses the given mathematical expression into a syntax tree.
PASSWORD_STYLE - Static variable in interface org.scijava.widget.TextWidget
Widget style for password fields.
path() - Method in class org.scijava.log.LogSource
Returns the list of strings which is represented by this LogSource.
PATH_SEPARATOR - Static variable in class org.scijava.MenuPath
The separator between elements of a menu path string.
pattern - Static variable in class org.scijava.ui.swing.script.FileFunctions.GrepLineHandler
 
PEACHPUFF - Static variable in class org.scijava.util.Colors
 
PERU - Static variable in class org.scijava.util.Colors
 
PINK - Static variable in class org.scijava.util.Colors
 
pixelsToSystemClipboard(ARGBPlane) - Method in class org.scijava.ui.awt.AWTClipboard
 
pixelsToSystemClipboard(ARGBPlane) - Method in interface org.scijava.ui.SystemClipboard
method that accepts a plane of ARGB data
placeInClipboard(String) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
PlainTextFormat - Class in org.scijava.plugins.text.plain
Plain text format, which handles vanilla .txt files.
PlainTextFormat() - Constructor for class org.scijava.plugins.text.plain.PlainTextFormat
 
platform() - Method in class org.scijava.AbstractGateway
 
platform() - Method in interface org.scijava.Gateway
Gets this application context's PlatformService.
Platform - Interface in org.scijava.platform
An interface for configuring a specific deployment platform, defined by criteria such as operating system, machine architecture or Java version.
PlatformService - Interface in org.scijava.platform
Interface for service that handles platform-specific deployment issues.
PlatformUtils - Class in org.scijava.util
Useful methods for platform-specific interrogation.
play(String) - Method in class org.scijava.util.TunePlayer
 
plugin() - Method in class org.scijava.AbstractGateway
 
plugin() - Method in interface org.scijava.Gateway
Gets this application context's PluginService.
Plugin - Annotation Type in org.scijava.plugin
Annotation identifying a plugin, which gets loaded by SciJava's dynamic discovery mechanism.
PluginFinder - Interface in org.scijava.plugin
Interface for mechanisms that define how SciJava plugins are discovered.
PluginIndex - Class in org.scijava.plugin
Data structure for managing registered plugins.
PluginIndex() - Constructor for class org.scijava.plugin.PluginIndex
Constructs a new plugin index which uses a DefaultPluginFinder to discover plugins.
PluginIndex(PluginFinder) - Constructor for class org.scijava.plugin.PluginIndex
Constructs a new plugin index which uses the given PluginFinder to discover plugins.
PluginInfo<PT extends SciJavaPlugin> - Class in org.scijava.plugin
A collection of metadata about a particular plugin.
PluginInfo(String, Class<PT>) - Constructor for class org.scijava.plugin.PluginInfo
Creates a new plugin metadata object.
PluginInfo(String, Class<PT>, Plugin) - Constructor for class org.scijava.plugin.PluginInfo
Creates a new plugin metadata object.
PluginInfo(String, Class<PT>, Plugin, ClassLoader) - Constructor for class org.scijava.plugin.PluginInfo
Creates a new plugin metadata object.
PluginInfo(Class<? extends PT>, Class<PT>) - Constructor for class org.scijava.plugin.PluginInfo
Creates a new plugin metadata object.
PluginInfo(Class<? extends PT>, Class<PT>, Plugin) - Constructor for class org.scijava.plugin.PluginInfo
Creates a new plugin metadata object.
PluginInfo(String, Class<? extends PT>, Class<PT>, Plugin, ClassLoader) - Constructor for class org.scijava.plugin.PluginInfo
 
PLUGINS_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
PLUGINS_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
PLUGINS_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
PluginsAddedEvent - Class in org.scijava.plugin.event
An event indicating one or more plugins have been added to the PluginService.
PluginsAddedEvent(PluginInfo<?>) - Constructor for class org.scijava.plugin.event.PluginsAddedEvent
 
PluginsAddedEvent(Collection<? extends PluginInfo<?>>) - Constructor for class org.scijava.plugin.event.PluginsAddedEvent
 
pluginService() - Method in class org.scijava.command.DefaultCommandService
 
pluginService - Variable in class org.scijava.command.DynamicCommand
 
pluginService() - Method in class org.scijava.display.DefaultDisplayService
 
pluginService() - Method in interface org.scijava.display.DisplayService
 
pluginService() - Method in class org.scijava.plugin.AbstractPTService
 
PluginService - Interface in org.scijava.plugin
Interface for service that keeps track of available plugins.
pluginService() - Method in interface org.scijava.plugin.PTService
Gets the service responsible for discovering and managing this service's plugins.
PluginsListEvent - Class in org.scijava.plugin.event
An event indicating something has happened to the list of plugins registered with the PluginService.
PluginsListEvent(PluginInfo<?>) - Constructor for class org.scijava.plugin.event.PluginsListEvent
 
PluginsListEvent(Collection<? extends PluginInfo<?>>) - Constructor for class org.scijava.plugin.event.PluginsListEvent
 
PluginsRemovedEvent - Class in org.scijava.plugin.event
An event indicating one or more plugins have been removed from the PluginService.
PluginsRemovedEvent(PluginInfo<?>) - Constructor for class org.scijava.plugin.event.PluginsRemovedEvent
 
PluginsRemovedEvent(Collection<? extends PluginInfo<?>>) - Constructor for class org.scijava.plugin.event.PluginsRemovedEvent
 
PLUM - Static variable in class org.scijava.util.Colors
 
POM - Class in org.scijava.util
Helper class for working with Maven POMs.
POM(File) - Constructor for class org.scijava.util.POM
Parses a POM from the given file.
POM(URL) - Constructor for class org.scijava.util.POM
Parses a POM from the given URL.
POM(InputStream) - Constructor for class org.scijava.util.POM
Parses a POM from the given input stream.
POM(String) - Constructor for class org.scijava.util.POM
Parses a POM from the given string.
PopperUpper() - Constructor for class org.scijava.ui.swing.StaticSwingUtils.PopperUpper
 
populateChildren(DefaultTreeModel, FileFilter) - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
If it's a directory, add a Node for each of its visible files.
populateInput(Module, ModuleItem<?>, I) - Method in interface org.scijava.batch.input.BatchInputProvider
 
populateInput(Module, ModuleItem<?>, File) - Method in class org.scijava.batch.input.FileBatchInputProvider
 
populateInputCandidates(Collection<Object>) - Method in class org.scijava.convert.AbstractConverter
 
populateInputCandidates(Collection<Object>) - Method in interface org.scijava.convert.Converter
Populates the given collection with objects which are known to exist, and which are usable as inputs for this converter.
popUp(MouseEvent) - Method in class org.scijava.ui.swing.StaticSwingUtils.PopperUpper
 
pos(Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pos(int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pos(long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pos(float) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pos(double) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pos(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.POS operator.
POS - Static variable in class org.scijava.parsington.Operators
 
Position - Class in org.scijava.parsington
A mutable parse position.
Position() - Constructor for class org.scijava.parsington.Position
 
POST_DEC - Static variable in class org.scijava.parsington.Operators
 
POST_INC - Static variable in class org.scijava.parsington.Operators
 
postDec(Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
postDec(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.POST_DEC operator.
postfix() - Method in class org.scijava.parsington.SyntaxTree
Converts the syntax tree into a token queue in postfix order.
postInc(Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
postInc(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.POST_INC operator.
postProcess() - Method in class org.scijava.module.ModuleRunner
Feeds the module through the ModulePostprocessors.
PostprocessorPlugin - Interface in org.scijava.module.process
A postprocessor plugin defines a step that occurs immediately following the actual execution of a Module.
pow(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pow(double, double) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pow(BigInteger, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pow(BigDecimal, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
pow(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.POW operator.
POW - Static variable in class org.scijava.parsington.Operators
 
POW_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
powAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
powAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.POW_ASSIGN operator.
POWDERBLUE - Static variable in class org.scijava.util.Colors
 
PRE_DEC - Static variable in class org.scijava.parsington.Operators
 
PRE_INC - Static variable in class org.scijava.parsington.Operators
 
preDec(Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
preDec(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.PRE_DEC operator.
prefix(int) - Static method in class org.scijava.log.LogLevel
 
prefs() - Method in class org.scijava.AbstractGateway
 
prefs() - Method in interface org.scijava.app.App
Displays application preferences.
prefs() - Method in interface org.scijava.platform.AppEventService
Deprecated.
Use App.prefs() instead.
prefs() - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
 
Prefs - Class in org.scijava.util
Deprecated.
PrefService - Interface in org.scijava.prefs
Service for storing and retrieving arbitrary preferences.
preInc(Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
preInc(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.PRE_INC operator.
prepare() - Method in class org.scijava.ui.swing.script.TextEditorTab
Invoke in the context of the event dispatch thread.
preProcess() - Method in class org.scijava.module.ModuleRunner
Feeds the module through the ModulePreprocessors.
PreprocessorPlugin - Interface in org.scijava.module.process
A preprocessor plugin defines a step that occurs just prior to the actual execution of a Module.
pressedKeys() - Method in class org.scijava.ui.behaviour.GlobalKeyEventDispatcher
 
prettyPrintInputs(Set<InputTrigger>) - Static method in class org.scijava.ui.behaviour.io.InputTriggerConfig
Creates a pretty printed list of keys, useful in conjunction with InputTriggerConfig.getInputs(java.lang.String, java.lang.String).
preview() - Method in class org.scijava.command.CommandModule
Computes a preview of the command's results.
preview() - Method in class org.scijava.command.InteractiveCommand
 
preview() - Method in interface org.scijava.command.Previewable
Computes a preview of the operation's results.
preview() - Method in class org.scijava.module.AbstractModule
 
preview() - Method in interface org.scijava.module.Module
Computes a preview of the module's execution results, if available.
preview() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder
 
Previewable - Interface in org.scijava.command
An operation (usually a Command) whose results can be previewed.
previous(int) - Method in class org.scijava.util.LastRecentlyUsed
Given the index of an entry, returns the index of the next older entry.
PrimitiveArray<ArrayType,BaseType> - Interface in org.scijava.util
Interface for primitive-type extensible arrays, modeled after ArrayList, but more performant.
PrimitiveArrayUnwrapper<I,O,W extends PrimitiveArray<I,O>> - Class in org.scijava.convert
Abstract Converter for converting from the SciJava PrimitiveArray classes to primitive arrays.
PrimitiveArrayUnwrapper() - Constructor for class org.scijava.convert.PrimitiveArrayUnwrapper
 
PrimitiveArrayWrapper<I,O,W extends PrimitiveArray<I,O>> - Class in org.scijava.convert
Abstract Converter for converting from primitive array classes to the SciJava PrimitiveArray classes.
PrimitiveArrayWrapper() - Constructor for class org.scijava.convert.PrimitiveArrayWrapper
 
PrimitiveColumn<ArrayType,BaseType> - Interface in org.scijava.table
A column of data backed by a PrimitiveArray.
print(String) - Method in class org.scijava.ui.swing.script.InterpreterPane
Prints a message to the output panel.
print(String) - Method in class org.scijava.ui.swing.script.InterpreterWindow
Print a message to the current language's output panel
print(String) - Method in class org.scijava.ui.swing.script.JTextAreaWriter
 
print80(String) - Method in class org.scijava.minimaven.BuildEnvironment
 
printFiles(PrintFilesEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
println(String) - Method in class org.scijava.ui.swing.script.FileFunctions.GrepLineHandler
 
println(String) - Method in class org.scijava.ui.swing.script.FileFunctions.ScreenOutputStream
 
println(String) - Method in class org.scijava.util.LineOutputStream
This method is all that needs to be implemented.
Prioritized - Interface in org.scijava
An object that can be sorted according to priority.
PRIORITY - Static variable in class org.scijava.event.DefaultEventService
The default event service's priority.
PRIORITY - Static variable in class org.scijava.module.process.SaveInputsPreprocessor
 
Priority - Class in org.scijava
Constants for specifying an item's priority.
PRIORITY - Static variable in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
PRIORITY - Static variable in interface org.scijava.widget.InputHarvester
 
process(Set<? extends TypeElement>, RoundEnvironment) - Method in class org.scijava.annotations.AnnotationProcessor
 
process(Module) - Method in class org.scijava.display.ActiveDisplayPreprocessor
 
process(Module) - Method in class org.scijava.display.DisplayPostprocessor
 
process(String) - Method in class org.scijava.grab.script.process.GrabScriptProcessor
 
process(Module) - Method in class org.scijava.module.process.CheckInputsPreprocessor
 
process(Module) - Method in class org.scijava.module.process.DebugPostprocessor
 
process(Module) - Method in class org.scijava.module.process.DebugPreprocessor
 
process(Module) - Method in class org.scijava.module.process.DefaultValuePreprocessor
 
process(Module) - Method in class org.scijava.module.process.GatewayPreprocessor
 
process(Module) - Method in class org.scijava.module.process.InitPreprocessor
 
process(Module) - Method in class org.scijava.module.process.LoadInputsPreprocessor
 
process(Module) - Method in class org.scijava.module.process.LoggerPreprocessor
 
process(Module) - Method in interface org.scijava.module.process.ModuleProcessor
Performs a processing step on the given module instance.
process(Module) - Method in class org.scijava.module.process.SaveInputsPreprocessor
 
process(Module) - Method in class org.scijava.module.process.ServicePreprocessor
 
process(Module) - Method in class org.scijava.module.process.ValidityPreprocessor
 
process(String) - Method in class org.scijava.script.process.DirectiveScriptProcessor
 
process(String, Map<String, Object>, String) - Method in class org.scijava.script.process.DirectiveScriptProcessor
Processes the given directive.
process(String) - Method in class org.scijava.script.process.ParameterScriptProcessor
 
process(String, Map<String, Object>, String) - Method in class org.scijava.script.process.ScriptDirectiveScriptProcessor
 
process(String) - Method in interface org.scijava.script.process.ScriptProcessor
 
process(ScriptInfo) - Method in interface org.scijava.script.process.ScriptProcessorService
Invokes all ScriptProcessor plugins on the given script, line by line in sequence.
process(String) - Method in class org.scijava.script.process.ShebangScriptProcessor
 
process(Module) - Method in class org.scijava.table.process.ResultsPostprocessor
 
process(Module) - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
 
process(Module) - Method in class org.scijava.ui.FileListPreprocessor
 
process(Module) - Method in class org.scijava.ui.FilePreprocessor
 
process(Module) - Method in class org.scijava.ui.UIPreprocessor
 
PROCESS_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
PROCESS_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
PROCESS_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
processArgs(String...) - Method in interface org.scijava.console.ConsoleService
Handles arguments from an external source such as the command line.
processArgs(String...) - Method in class org.scijava.console.DefaultConsoleService
 
processCharacters(StringBuilder) - Method in class org.scijava.minimaven.AbstractPOMHandler
 
processCharacters(StringBuilder) - Method in class org.scijava.minimaven.SnapshotPOMHandler
 
processCharacters(StringBuilder) - Method in class org.scijava.minimaven.VersionPOMHandler
 
processResults(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester
Does any needed processing, after input values have been harvested.
ProcessUtils - Class in org.scijava.util
Useful methods for working with processes.
prompt() - Method in class org.scijava.script.ScriptREPL
Outputs the prompt.
prompt() - Method in interface org.scijava.ui.DialogPrompt
 
prompt() - Method in class org.scijava.ui.swing.mdi.SwingMdiDialogPrompt
 
prompt - Variable in class org.scijava.ui.swing.script.TextEditorTab
 
prompt() - Method in class org.scijava.ui.swing.sdi.SwingDialogPrompt
 
PromptPane - Class in org.scijava.ui.swing.script
The prompt for the script REPL.
PromptPane(ScriptREPL, VarsPane, OutputPane) - Constructor for class org.scijava.ui.swing.script.PromptPane
 
PromptPane.TextArea - Class in org.scijava.ui.swing.script
Trivial extension of JTextArea to expose its getRowHeight() method.
properties - Variable in class org.scijava.minimaven.MavenProject
 
properties() - Method in class org.scijava.search.classes.ClassSearchResult
 
properties() - Method in class org.scijava.search.module.ModuleSearchResult
 
properties() - Method in interface org.scijava.search.SearchResult
 
properties() - Method in class org.scijava.search.snippet.SnippetSearchResult
 
properties() - Method in class org.scijava.search.template.TemplateSearchResult
 
properties() - Method in class org.scijava.search.web.WebSearchResult
 
proxy() - Static method in class org.scijava.plugins.scripting.matlab.MATLABControlUtils
A running MATLAB instance can only have one proxy active at a time.
proxy(boolean) - Static method in class org.scijava.plugins.scripting.matlab.MATLABControlUtils
As MATLABControlUtils.proxy(), with a specification flag for whether or not the MATLAB instance should be hidden and automatically exit when the calling JVM is shut down.
proxy(boolean, boolean) - Static method in class org.scijava.plugins.scripting.matlab.MATLABControlUtils
As MATLABControlUtils.proxy(boolean) with a specification flag for whether or not MATLAB should be allowed to run multithreaded.
proxy(boolean, boolean, String) - Static method in class org.scijava.plugins.scripting.matlab.MATLABControlUtils
As MATLABControlUtils.proxy(boolean, boolean) with a specification string for the MATLAB license file.
proxy(MATLABOptions) - Static method in class org.scijava.plugins.scripting.matlab.MATLABControlUtils
PTService<PT extends SciJavaPlugin> - Interface in org.scijava.plugin
A service for managing a particular sort of SciJavaPlugin.
publish(StatusEvent) - Method in class org.scijava.app.DefaultStatusService
Publish the status event to the event service.
publish(Object) - Method in class org.scijava.event.DefaultEventBus
 
publish(Type, Object) - Method in class org.scijava.event.DefaultEventBus
 
publish(String, Object) - Method in class org.scijava.event.DefaultEventBus
 
publish(Object, String, Object, List, List, StackTraceElement[]) - Method in class org.scijava.event.DefaultEventBus
 
publish(E) - Method in class org.scijava.event.DefaultEventService
 
publish(E) - Method in interface org.scijava.event.EventService
Publishes the given event immediately, reporting it to all subscribers.
publishLater(Object) - Method in class org.scijava.event.DefaultEventBus
 
publishLater(Type, Object) - Method in class org.scijava.event.DefaultEventBus
 
publishLater(String, Object) - Method in class org.scijava.event.DefaultEventBus
 
publishLater(E) - Method in class org.scijava.event.DefaultEventService
 
publishLater(E) - Method in interface org.scijava.event.EventService
Queues the given event for publication, typically on a separate thread (called the "event dispatch thread").
publishNow(Object) - Method in class org.scijava.event.DefaultEventBus
 
publishNow(Type, Object) - Method in class org.scijava.event.DefaultEventBus
 
publishNow(String, Object) - Method in class org.scijava.event.DefaultEventBus
 
PURPLE - Static variable in class org.scijava.util.Colors
 
put(Object, Object) - Method in interface org.scijava.cache.CacheService
Stores the given object in the cache.
put(Object, Object) - Method in class org.scijava.cache.DefaultCacheService
 
put(Object, Object) - Method in class org.scijava.cache.GuavaCacheService
 
put(String, Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
put(String, Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
put(String, Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
put(String, Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
put(Class<?>, String, String) - Method in class org.scijava.prefs.DefaultPrefService
 
put(Class<?>, String, boolean) - Method in class org.scijava.prefs.DefaultPrefService
 
put(Class<?>, String, double) - Method in class org.scijava.prefs.DefaultPrefService
 
put(Class<?>, String, float) - Method in class org.scijava.prefs.DefaultPrefService
 
put(Class<?>, String, int) - Method in class org.scijava.prefs.DefaultPrefService
 
put(Class<?>, String, long) - Method in class org.scijava.prefs.DefaultPrefService
 
put(Class<?>, String, Map<String, String>) - Method in class org.scijava.prefs.DefaultPrefService
 
put(Class<?>, String, Iterable<String>) - Method in class org.scijava.prefs.DefaultPrefService
 
put(Class<?>, String, String) - Method in interface org.scijava.prefs.PrefService
Saves a key/value pair in persistent storage.
put(Class<?>, String, boolean) - Method in interface org.scijava.prefs.PrefService
Saves a key/value pair in persistent storage.
put(Class<?>, String, double) - Method in interface org.scijava.prefs.PrefService
Saves a key/value pair in persistent storage.
put(Class<?>, String, float) - Method in interface org.scijava.prefs.PrefService
Saves a key/value pair in persistent storage.
put(Class<?>, String, int) - Method in interface org.scijava.prefs.PrefService
Saves a key/value pair in persistent storage.
put(Class<?>, String, long) - Method in interface org.scijava.prefs.PrefService
Saves a key/value pair in persistent storage.
put(Class<?>, String, Map<String, String>) - Method in interface org.scijava.prefs.PrefService
Saves a key/value pair in persistent storage.
put(Class<?>, String, Iterable<String>) - Method in interface org.scijava.prefs.PrefService
Saves a key/value pair in persistent storage.
put(String, String) - Method in interface org.scijava.prefs.PrefService
put(String, boolean) - Method in interface org.scijava.prefs.PrefService
put(String, double) - Method in interface org.scijava.prefs.PrefService
put(String, float) - Method in interface org.scijava.prefs.PrefService
put(String, int) - Method in interface org.scijava.prefs.PrefService
put(String, long) - Method in interface org.scijava.prefs.PrefService
put(String, Object) - Method in class org.scijava.script.AbstractScriptEngine
 
put(String, Object) - Method in class org.scijava.script.AdaptedScriptEngine
 
put(String, Behaviour) - Method in class org.scijava.ui.behaviour.BehaviourMap
Adds a binding for key to behaviour.
put(String, InputTrigger...) - Method in interface org.scijava.ui.behaviour.InputTriggerAdder
 
put(String, String...) - Method in interface org.scijava.ui.behaviour.InputTriggerAdder
 
put(String) - Method in interface org.scijava.ui.behaviour.InputTriggerAdder
 
put(InputTrigger, String) - Method in class org.scijava.ui.behaviour.InputTriggerMap
Adds a binding for inputTrigger to behaviourKey.
put(String, InputTrigger...) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig.InputTriggerAdderImp
 
put(String, String...) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig.InputTriggerAdderImp
 
put(String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig.InputTriggerAdderImp
 
put(String, KeyStroke...) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig.KeyStrokeAdderImp
 
put(String, InputTrigger...) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig.KeyStrokeAdderImp
 
put(String, String...) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig.KeyStrokeAdderImp
 
put(String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig.KeyStrokeAdderImp
 
put(String, KeyStroke...) - Method in interface org.scijava.ui.behaviour.KeyStrokeAdder
Deprecated.
put(String, InputTrigger...) - Method in interface org.scijava.ui.behaviour.KeyStrokeAdder
 
put(String, String...) - Method in interface org.scijava.ui.behaviour.KeyStrokeAdder
 
put(String) - Method in interface org.scijava.ui.behaviour.KeyStrokeAdder
 
put(ActionMap) - Method in class org.scijava.ui.behaviour.util.AbstractNamedAction
 
put(BehaviourMap) - Method in class org.scijava.ui.behaviour.util.AbstractNamedBehaviour
 
put(Object, Action) - Method in class org.scijava.ui.behaviour.util.WrappedActionMap
 
put(String, Behaviour) - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
put(KeyStroke, Object) - Method in class org.scijava.ui.behaviour.util.WrappedInputMap
 
put(InputTrigger, String) - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
put(String, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(String, boolean) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(String, double) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(String, float) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(String, int) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(String, long) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(Class<?>, String, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(Class<?>, String, boolean) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(Class<?>, String, double) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(Class<?>, String, float) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(Class<?>, String, int) - Static method in class org.scijava.util.Prefs
Deprecated.
 
put(Class<?>, String, long) - Static method in class org.scijava.util.Prefs
Deprecated.
 
putAll(Map<? extends String, ? extends Object>) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
putAll(Map<? extends String, ? extends Object>) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
putAll(Map<? extends String, ? extends Object>) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
putAll(Map<? extends String, ? extends Object>) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
putIterable(Class<?>, Iterable<String>, String) - Method in interface org.scijava.prefs.PrefService
putIterable(Iterable<String>, String) - Method in interface org.scijava.prefs.PrefService
putList(Class<?>, List<String>) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
putList(String, List<String>, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
putList(String, List<String>) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
putList(Class<?>, List<String>, String) - Method in interface org.scijava.prefs.PrefService
putList(Class<?>, List<String>) - Method in interface org.scijava.prefs.PrefService
putList(List<String>, String) - Method in interface org.scijava.prefs.PrefService
putList(String, List<String>, String) - Method in interface org.scijava.prefs.PrefService
putList(String, List<String>) - Method in interface org.scijava.prefs.PrefService
putList(List<String>, String) - Static method in class org.scijava.util.Prefs
Deprecated.
Puts a list into the preferences.
putList(Preferences, List<String>, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
putList(Preferences, List<String>) - Static method in class org.scijava.util.Prefs
Deprecated.
Puts a list into the preferences.
putMap(Class<?>, Map<String, String>) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
putMap(String, Map<String, String>, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
putMap(String, Map<String, String>) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
putMap(Class<?>, Map<String, String>, String) - Method in interface org.scijava.prefs.PrefService
putMap(Class<?>, Map<String, String>) - Method in interface org.scijava.prefs.PrefService
putMap(Map<String, String>, String) - Method in interface org.scijava.prefs.PrefService
putMap(String, Map<String, String>) - Method in interface org.scijava.prefs.PrefService
putMap(String, Map<String, String>, String) - Method in interface org.scijava.prefs.PrefService
putMap(Map<String, String>, String) - Static method in class org.scijava.util.Prefs
Deprecated.
Puts a map into the preferences.
putMap(Preferences, Map<String, String>, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
putMap(Preferences, Map<String, String>) - Static method in class org.scijava.util.Prefs
Deprecated.
Puts a map into the preferences.

Q

qName - Variable in class org.scijava.minimaven.AbstractPOMHandler
 
Query - Class in org.scijava.util
A map of annotations to annotated elements.
Query() - Constructor for class org.scijava.util.Query
 
Query(Query) - Constructor for class org.scijava.util.Query
 
queue(Runnable) - Method in class org.scijava.thread.DefaultThreadService
 
queue(String, Runnable) - Method in class org.scijava.thread.DefaultThreadService
 
queue(String, Callable<V>) - Method in class org.scijava.thread.DefaultThreadService
 
queue(Runnable) - Method in interface org.scijava.thread.ThreadService
Queues the given code for later execution in a special dispatch thread, returning immediately.
queue(String, Runnable) - Method in interface org.scijava.thread.ThreadService
Queues the given code for later execution in a dispatch thread associated with the specified ID, returning immediately.
queue(String, Callable<V>) - Method in interface org.scijava.thread.ThreadService
Queues the given code for later execution in a dispatch thread associated with the specified ID, returning immediately.
quit() - Method in interface org.scijava.app.App
Quits the application.
quit() - Method in interface org.scijava.platform.AppEventService
Deprecated.
Use App.quit() instead.
quit() - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
 
quit() - Method in class org.scijava.ui.swing.script.PromptPane
A callback method which is invoked when the REPL quits.
quote(char) - Method in class org.scijava.table.io.TableIOOptions
 
quote() - Method in class org.scijava.table.io.TableIOOptions.Values
 
quoteArg(String) - Static method in class org.scijava.minimaven.JavaCompiler
 
quoteArg(String, String) - Static method in class org.scijava.minimaven.JavaCompiler
 

R

RADIO_BUTTON_HORIZONTAL_STYLE - Static variable in interface org.scijava.widget.ChoiceWidget
Widget style for radio buttons arranged on a single line.
RADIO_BUTTON_VERTICAL_STYLE - Static variable in interface org.scijava.widget.ChoiceWidget
Widget style for radio buttons arranged one per line.
raw(Type) - Static method in class org.scijava.util.Types
Gets the (first) raw class of the given type.
raws(Type) - Static method in class org.scijava.util.Types
Gets all raw classes corresponding to the given type.
read(byte[], int, int) - Method in class org.scijava.download.MultiWriteHandle
 
read(byte[], int, int) - Method in class org.scijava.io.handle.BytesHandle
 
read() - Method in interface org.scijava.io.handle.DataHandle
Reads the next byte of data from the stream.
read(byte[]) - Method in interface org.scijava.io.handle.DataHandle
Reads up to b.length bytes of data from the stream into an array of bytes.
read(byte[], int, int) - Method in interface org.scijava.io.handle.DataHandle
Reads up to len bytes of data from the stream into an array of bytes.
read() - Method in class org.scijava.io.handle.DataHandleInputStream
 
read(byte[], int, int) - Method in class org.scijava.io.handle.DataHandleInputStream
 
read(byte[], int, int) - Method in class org.scijava.io.handle.DummyHandle
 
read() - Method in class org.scijava.io.handle.FileHandle
 
read(byte[]) - Method in class org.scijava.io.handle.FileHandle
 
read(byte[], int, int) - Method in class org.scijava.io.handle.FileHandle
 
read(byte[], int, int) - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
read() - Method in interface org.scijava.io.handle.StreamHandle
 
read(byte[], int, int) - Method in interface org.scijava.io.handle.StreamHandle
 
read(byte[], int, int) - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
read(Reader) - Static method in class org.scijava.ui.behaviour.io.json.JsonConfigIO
 
read(String) - Static method in class org.scijava.ui.behaviour.io.json.JsonConfigIO
 
read(Reader) - Static method in class org.scijava.ui.behaviour.io.yaml.YamlConfigIO
Reads from the specified reader instance and returns the list of serialized InputTriggerDescriptions that are found in the input stream.
read(String) - Static method in class org.scijava.ui.behaviour.io.yaml.YamlConfigIO
Reads from the specified file and returns the list of serialized InputTriggerDescriptions that are found in the file.
readBoolean() - Method in interface org.scijava.io.handle.DataHandle
 
readBoolean() - Method in class org.scijava.io.handle.FileHandle
 
readBuffer(DataHandle<Location>) - Method in interface org.scijava.io.handle.DataHandleService
Wraps the provided DataHandle in a read-only buffer for accelerated reading.
readBuffer(Location) - Method in interface org.scijava.io.handle.DataHandleService
Creates a DataHandle on the provided Location wrapped in a read-only buffer for accelerated reading.
ReadBufferDataHandle - Class in org.scijava.io.handle
Read-only buffered DataHandle.
ReadBufferDataHandle(DataHandle<Location>) - Constructor for class org.scijava.io.handle.ReadBufferDataHandle
Creates a ReadBufferDataHandle wrapping the provided handle using the default values for the size of the pages ( byte) and number of pages (ReadBufferDataHandle.DEFAULT_NUM_PAGES).
ReadBufferDataHandle(DataHandle<Location>, int) - Constructor for class org.scijava.io.handle.ReadBufferDataHandle
Creates a ReadBufferDataHandle wrapping the provided handle using the default value for the number of pages (ReadBufferDataHandle.DEFAULT_NUM_PAGES).
ReadBufferDataHandle(DataHandle<Location>, int, int) - Constructor for class org.scijava.io.handle.ReadBufferDataHandle
Creates a ReadBufferDataHandle wrapping the provided handle.
readByte() - Method in class org.scijava.download.MultiWriteHandle
 
readByte() - Method in class org.scijava.io.handle.BytesHandle
 
readByte() - Method in class org.scijava.io.handle.DummyHandle
 
readByte() - Method in class org.scijava.io.handle.FileHandle
 
readByte() - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
readByte() - Method in interface org.scijava.io.handle.StreamHandle
 
readByte() - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
readChar() - Method in interface org.scijava.io.handle.DataHandle
 
readColumnHeaders(boolean) - Method in class org.scijava.table.io.TableIOOptions
 
readColumnHeaders() - Method in class org.scijava.table.io.TableIOOptions.Values
 
readCString() - Method in interface org.scijava.io.handle.DataHandle
Reads a string of arbitrary length, terminated by a null char.
readDouble() - Method in interface org.scijava.io.handle.DataHandle
 
reader - Variable in class org.scijava.minimaven.ReadInto
 
reader - Variable in class org.scijava.script.AbstractScriptContext
 
reader - Variable in class org.scijava.util.ReadInto
 
readFile(File) - Static method in class org.scijava.util.FileUtils
Reads the contents of the given file into a new byte array.
readFloat() - Method in interface org.scijava.io.handle.DataHandle
 
readFully(byte[], int, int) - Method in class org.scijava.io.handle.BytesHandle
 
readFully(byte[]) - Method in interface org.scijava.io.handle.DataHandle
 
readFully(byte[], int, int) - Method in interface org.scijava.io.handle.DataHandle
 
readFully(byte[]) - Method in class org.scijava.io.handle.FileHandle
 
readFully(byte[], int, int) - Method in class org.scijava.io.handle.FileHandle
 
readHistory() - Method in class org.scijava.script.DefaultScriptInterpreter
 
readHistory() - Method in interface org.scijava.script.ScriptInterpreter
Reads the persisted history of the current script interpreter.
readInt() - Method in interface org.scijava.io.handle.DataHandle
 
ReadInto - Class in org.scijava.minimaven
TODO
ReadInto(InputStream, PrintStream) - Constructor for class org.scijava.minimaven.ReadInto
 
ReadInto - Class in org.scijava.util
This class takes an InputStream and either accumulates the read bytes in a String or outputs to a PrintStream.
ReadInto(InputStream, PrintStream) - Constructor for class org.scijava.util.ReadInto
Construct a ReadInto thread and start it right away.
ReadInto(InputStream, PrintStream, boolean) - Constructor for class org.scijava.util.ReadInto
Construct a ReadInto thread and start it right away.
readLine() - Method in interface org.scijava.io.handle.DataHandle
 
readLine() - Method in class org.scijava.io.handle.FileHandle
 
readLong() - Method in interface org.scijava.io.handle.DataHandle
 
readObject() - Method in class org.scijava.annotations.legacy.LegacyReader
 
readOnlyException() - Static method in class org.scijava.io.handle.DataHandles
 
readRowHeaders(boolean) - Method in class org.scijava.table.io.TableIOOptions
 
readRowHeaders() - Method in class org.scijava.table.io.TableIOOptions.Values
 
readShort() - Method in interface org.scijava.io.handle.DataHandle
 
readState(DataInputStream) - Method in class org.scijava.util.MersenneTwisterFast
Reads the entire state of the MersenneTwister RNG from the stream
readStream(InputStream) - Static method in class org.scijava.minimaven.JarClassLoader
 
readStream(InputStream) - Method in class org.scijava.ui.swing.script.FileFunctions
 
readString(int) - Method in interface org.scijava.io.handle.DataHandle
Reads a string of up to length n.
readString(String) - Method in interface org.scijava.io.handle.DataHandle
Reads a string ending with one of the characters in the given string.
readUnsignedByte() - Method in interface org.scijava.io.handle.DataHandle
 
readUnsignedByte() - Method in class org.scijava.io.handle.FileHandle
 
readUnsignedShort() - Method in interface org.scijava.io.handle.DataHandle
 
readUTF() - Method in interface org.scijava.io.handle.DataHandle
 
readUTF() - Method in class org.scijava.io.handle.FileHandle
 
RealCoords - Class in org.scijava.util
This class represents an (X, Y) coordinate pair in real coordinates.
RealCoords(double, double) - Constructor for class org.scijava.util.RealCoords
 
RealRect - Class in org.scijava.util
A class for representing a rectangular region, in real coordinates.
RealRect() - Constructor for class org.scijava.util.RealRect
 
RealRect(double, double, double, double) - Constructor for class org.scijava.util.RealRect
 
rebuild() - Method in class org.scijava.display.AbstractDisplay
 
RECENT_FILES_PREFS_PREFIX - Static variable in class org.scijava.ui.swing.script.RecentFilesMenuItem
 
recentFile() - Method in class org.scijava.AbstractGateway
 
recentFile() - Method in interface org.scijava.Gateway
Gets this application context's RecentFileService.
recentFiles - Variable in class org.scijava.ui.swing.script.RecentFilesMenuItem
 
RecentFileService - Interface in org.scijava.io
Interface for services that manage the Recently Used Files menu.
RecentFilesMenuItem - Class in org.scijava.ui.swing.script
JMenu holding recently opened files (stored in the "script.editor.recent" preference).
RecentFilesMenuItem(PrefService, TextEditor) - Constructor for class org.scijava.ui.swing.script.RecentFilesMenuItem
Constructor.
recreatePossible() - Method in class org.scijava.io.handle.AbstractSeekableStreamHandle
In some implementations of this class, the ability to recreate the stream depends on external factors (e.g.
recreatePossible() - Method in class org.scijava.io.http.HTTPHandle
 
recreateStreamFromPos(long) - Method in class org.scijava.io.handle.AbstractSeekableStreamHandle
Recreates the internal input stream available through StreamHandle.in(), so that it starts from the specified position.
recreateStreamFromPos(long) - Method in class org.scijava.io.http.HTTPHandle
Reconnects to the HTTP server, requesting the content starting from the indicated position.
RED - Static variable in class org.scijava.util.Colors
 
redoLastAction() - Method in class org.scijava.ui.swing.script.EditorPane
 
redoLayout() - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
redoLayout() - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer.SwingDisplayPanel
 
redoLayout() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel
 
redoLayout() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
redoLayout() - Method in interface org.scijava.ui.viewer.DisplayPanel
Rebuilds the display window to reflect the display's current views, dimensional lengths, etc.
redraw() - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
redraw() - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer.SwingDisplayPanel
 
redraw() - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel
 
redraw() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
redraw() - Method in interface org.scijava.ui.viewer.DisplayPanel
Redraws the contents of the panel.
ReflectedUniverse - Class in org.scijava.util
A general-purpose reflection wrapper class.
ReflectedUniverse() - Constructor for class org.scijava.util.ReflectedUniverse
Constructs a new reflected universe.
ReflectedUniverse(URL[]) - Constructor for class org.scijava.util.ReflectedUniverse
Constructs a new reflected universe, with the given URLs representing additional search paths for imported classes (in addition to the CLASSPATH).
ReflectedUniverse(ClassLoader) - Constructor for class org.scijava.util.ReflectedUniverse
Constructs a new reflected universe that uses the given class loader.
ReflectException - Exception in org.scijava.util
An exception thrown when something goes wrong performing a reflected operation with ReflectedUniverse.
ReflectException() - Constructor for exception org.scijava.util.ReflectException
 
ReflectException(String) - Constructor for exception org.scijava.util.ReflectException
 
ReflectException(String, Throwable) - Constructor for exception org.scijava.util.ReflectException
 
ReflectException(Throwable) - Constructor for exception org.scijava.util.ReflectException
 
refresh() - Method in class org.scijava.widget.AbstractInputPanel
 
refresh() - Method in interface org.scijava.widget.InputPanel
Updates the widgets to reflect the most recent parameter value(s).
refreshLog() - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Resets the text to match the current event history.
refreshTree() - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Refreshes the tree to match the state of its model.
refreshWidget() - Method in class org.scijava.ui.AbstractUIInputWidget
 
refreshWidget() - Method in interface org.scijava.widget.InputWidget
Refreshes the widget to reflect the latest model value(s).
register(Component) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
register(Component, boolean, boolean) - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
Attaches the event dispatcher to the given component as a listener.
register(Window) - Method in class org.scijava.ui.awt.AWTWindowEventDispatcher
 
registerAppMenus(Object) - Method in class org.scijava.platform.DefaultPlatformService
 
registerAppMenus(Object) - Method in interface org.scijava.platform.Platform
Informs the platform of a UI's newly created application menu structure.
registerAppMenus(Object) - Method in interface org.scijava.platform.PlatformService
Informs the active platform handlers of a UI's newly created application menu structure.
registerAppMenus(Object) - Method in class org.scijava.plugins.platforms.macos.MacOSPlatform
 
registerButton(Tool, AbstractButton) - Method in class org.scijava.ui.swing.SwingIconService
 
registerEventHandlers() - Method in interface org.scijava.service.Service
Registers the service's event handler methods.
registerInput(ModuleItem<?>) - Method in class org.scijava.module.AbstractModuleInfo
Adds an input.
registerInput(ModuleItem<?>) - Method in class org.scijava.script.ScriptInfo
 
registerOutput(ModuleItem<?>) - Method in class org.scijava.module.AbstractModuleInfo
Adds an output.
registerOutput(ModuleItem<?>) - Method in class org.scijava.script.ScriptInfo
 
reload() - Method in class org.scijava.ui.swing.script.TextEditor
 
reload(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
reloadPlugins() - Method in class org.scijava.plugin.DefaultPluginService
 
reloadPlugins() - Method in interface org.scijava.plugin.PluginService
Rediscovers all plugins available on the classpath.
RemoteLocation - Interface in org.scijava.io.location
A Location which resides on a remote machine.
remove(int) - Method in class org.scijava.display.AbstractDisplay
 
remove(Object) - Method in class org.scijava.display.AbstractDisplay
 
remove(String) - Method in class org.scijava.io.DefaultRecentFileService
 
remove(String) - Method in interface org.scijava.io.RecentFileService
Removes a path from the list of recent files.
remove(Object) - Method in class org.scijava.menu.ShadowMenu
 
remove() - Method in class org.scijava.menu.ShadowMenuIterator
 
remove(Object) - Method in class org.scijava.object.ObjectIndex
 
remove(Object, boolean) - Method in class org.scijava.object.ObjectIndex
Removes the object from all compatible type lists.
remove(Object, Class<?>, boolean) - Method in class org.scijava.object.ObjectIndex
Removes an object from type lists beneath the given type hierarchy.
remove(Object, boolean) - Method in class org.scijava.plugin.PluginIndex
Removes the plugin from all type lists compatible with its plugin type.
remove(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
remove(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
remove(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
remove(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
remove(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
remove(String, String) - Method in class org.scijava.prefs.DefaultPrefService
Deprecated.
remove(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Deletes a key from persistent storage.
remove(String, String) - Method in interface org.scijava.prefs.PrefService
remove(Object) - Method in interface org.scijava.table.Table
Removes the first occurrence of the specified column from the table, if it is present.
remove(int) - Method in interface org.scijava.table.Table
Removes the column at the specified position in the table.
remove(String) - Method in class org.scijava.ui.behaviour.BehaviourMap
Removes the binding for key from this map.
remove(InputTrigger, String) - Method in class org.scijava.ui.behaviour.InputTriggerMap
Remove the specific binding from inputTrigger to behaviourKey from this map.
remove(String, String, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
remove(InputTrigger, String, String) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
remove(InputTrigger, String, Collection<String>) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
remove(Object) - Method in class org.scijava.ui.behaviour.util.WrappedActionMap
 
remove(String) - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
remove(KeyStroke) - Method in class org.scijava.ui.behaviour.util.WrappedInputMap
 
remove(InputTrigger, String) - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
remove(int) - Method in class org.scijava.util.AbstractPrimitiveArray
 
remove(Object) - Method in class org.scijava.util.BoolArray
 
remove(Object) - Method in class org.scijava.util.ByteArray
 
remove(Object) - Method in class org.scijava.util.CharArray
 
remove(Object) - Method in class org.scijava.util.DoubleArray
 
remove(Object) - Method in class org.scijava.util.FloatArray
 
remove(Object) - Method in class org.scijava.util.IntArray
 
remove() - Method in class org.scijava.util.IteratorPlus
 
remove(Object) - Method in class org.scijava.util.LastRecentlyUsed
 
remove(Object) - Method in class org.scijava.util.LongArray
 
remove(Object) - Method in class org.scijava.util.ObjectArray
 
remove(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
Removes the node.
remove(Object) - Method in class org.scijava.util.ShortArray
 
removeActionMap(String) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Remove the ActionMap with the given id from the list.
removeAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay
 
removeAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu
 
removeAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex
 
removeAll(Collection<?>) - Method in interface org.scijava.table.Table
Removes from the table all of its columns that are contained in the specified collection.
removeAll(InputTrigger) - Method in class org.scijava.ui.behaviour.InputTriggerMap
Remove all bindings for inputTrigger from this map.
removeAll(InputTrigger) - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
removeAll(Collection<?>) - Method in class org.scijava.util.BoolArray
 
removeAll(Collection<?>) - Method in class org.scijava.util.ByteArray
 
removeAll(Collection<?>) - Method in class org.scijava.util.CharArray
 
removeAll(Collection<?>) - Method in class org.scijava.util.DoubleArray
 
removeAll(Collection<?>) - Method in class org.scijava.util.FloatArray
 
removeAll(Collection<?>) - Method in class org.scijava.util.IntArray
 
removeAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed
 
removeAll(Collection<?>) - Method in class org.scijava.util.LongArray
 
removeAll(Collection<?>) - Method in class org.scijava.util.ObjectArray
 
removeAll(Collection<?>) - Method in class org.scijava.util.ShortArray
 
removeAllChildren(DefaultTreeModel) - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
removeAttribute(String, int) - Method in class org.scijava.script.AbstractScriptContext
 
removeAutoCompletionListener(AutoCompletionListener) - Static method in class org.scijava.ui.swing.script.autocompletion.JythonAutocompletionProvider
 
removeBehaviourMap(String) - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings
Remove the BehaviourMap with the given id from the list.
removeColumn(int) - Method in interface org.scijava.table.Table
Removes the column at the given position from the table.
removeColumn(String) - Method in interface org.scijava.table.Table
Removes the first column with the given header from the table.
removeColumns(int, int) - Method in interface org.scijava.table.Table
Removes a block of columns starting at the given position from the table.
removeColumns(String...) - Method in interface org.scijava.table.Table
Removes the first columns with the given headers from the table.
removeConfigChangeListener(VisualEditorPanel.ConfigChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
Deprecated.
Use modelChangedListeners().remove(listener) instead.
removeFromList(Object, List<E>, boolean) - Method in class org.scijava.object.ObjectIndex
 
removeInput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
removeInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule
Removes an input from the list.
removeInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo
Removes an input from the list.
removeInputMap(String) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Remove the InputMap with the given id from the list.
removeInputTriggerChangeListener(InputTriggerPanelEditor.InputTriggerChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor
 
removeInputTriggerMap(String) - Method in class org.scijava.ui.behaviour.util.TriggerBehaviourBindings
Remove the InputTriggerMap with the given id from the list.
removeLeafListener(FileSystemTree.LeafListener) - Method in class org.scijava.ui.swing.script.FileSystemTree
 
removeListener(EventHistoryListener) - Method in class org.scijava.event.DefaultEventHistory
 
removeListener(EventHistoryListener) - Method in interface org.scijava.event.EventHistory
Removes an event history listener.
removeLogListener(LogListener) - Method in class org.scijava.log.AbstractLogService
 
removeLogListener(LogListener) - Method in class org.scijava.log.DefaultLogger
 
removeLogListener(LogListener) - Method in interface org.scijava.log.Logger
Removes an item from the list of registered listeners.
removeModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService
 
removeModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService
Manually unregisters a module with the module service.
removeModules(Collection<? extends ModuleInfo>) - Method in class org.scijava.module.DefaultModuleService
 
removeModules(Collection<? extends ModuleInfo>) - Method in interface org.scijava.module.ModuleService
Manually unregisters a list of modules with the module service.
removeObject(Object) - Method in interface org.scijava.object.ObjectService
Deregisters an object with the object service.
removeObserver(Runnable) - Method in class org.scijava.ui.swing.console.LogRecorder
 
removeOutput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
removeOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule
Removes an output from the list.
removeOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo
Removes an output from the list.
removeOutputListener(OutputListener) - Method in interface org.scijava.console.ConsoleService
Removes a listener for output sent to stdout or stderr.
removeOutputListener(OutputListener) - Method in class org.scijava.console.DefaultConsoleService
 
removeOutputStream(OutputStream) - Method in class org.scijava.console.MultiOutputStream
Removes an output stream from those receiving this stream's output.
removePlugin(PluginInfo<?>) - Method in class org.scijava.plugin.DefaultPluginService
 
removePlugin(PluginInfo<?>) - Method in interface org.scijava.plugin.PluginService
Manually unregisters a plugin with the plugin service.
removePlugins(Collection<T>) - Method in class org.scijava.plugin.DefaultPluginService
 
removePlugins(Collection<T>) - Method in interface org.scijava.plugin.PluginService
Manually unregisters plugins with the plugin service.
removePropertyChangeListener(PropertyChangeListener) - Method in interface org.scijava.ui.Arrangeable
 
removeRow(int) - Method in interface org.scijava.table.Table
Removes the row at the given position from the table.
removeRow(String) - Method in interface org.scijava.table.Table
Removes the first row with the given header from the table.
removeRows(int, int) - Method in class org.scijava.table.AbstractTable
 
removeRows(int, int) - Method in interface org.scijava.table.Table
Removes a block of rows starting at the given position from the table.
removeRows(String...) - Method in interface org.scijava.table.Table
Removes the first rows with the given headers from the table.
removeScriptDirectory(File) - Method in class org.scijava.script.DefaultScriptService
 
removeScriptDirectory(File) - Method in interface org.scijava.script.ScriptService
Removes a base directory to scan for scripts.
removeTagSelectionChangeListener(TagPanelEditor.TagSelectionChangeListener) - Method in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
removeTrailingWhitespace() - Method in class org.scijava.ui.swing.script.TokenFunctions
 
removeUnusedImports() - Method in class org.scijava.ui.swing.script.TokenFunctions
 
removeUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
removeUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.EditorPane
 
removeUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
removeUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.FileFunctions.TextWrapper
 
removeUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.script.TextEditor
 
removeUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
removeUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
removeValue(boolean) - Method in class org.scijava.util.BoolArray
 
removeValue(byte) - Method in class org.scijava.util.ByteArray
 
removeValue(char) - Method in class org.scijava.util.CharArray
 
removeValue(double) - Method in class org.scijava.util.DoubleArray
 
removeValue(float) - Method in class org.scijava.util.FloatArray
 
removeValue(int) - Method in class org.scijava.util.IntArray
 
removeValue(long) - Method in class org.scijava.util.LongArray
 
removeValue(E) - Method in class org.scijava.util.ObjectArray
 
removeValue(short) - Method in class org.scijava.util.ShortArray
 
rename(File, File) - Method in class org.scijava.minimaven.BuildEnvironment
 
RenjinScriptLanguage - Class in org.scijava.plugins.scripting.renjin
An adapter of the R interpreter to the SciJava scripting interface.
RenjinScriptLanguage() - Constructor for class org.scijava.plugins.scripting.renjin.RenjinScriptLanguage
 
RenjinUtils - Class in org.scijava.plugins.scripting.renjin
Utility methods for use with R scripts.
RenjinUtils() - Constructor for class org.scijava.plugins.scripting.renjin.RenjinUtils
 
replace(DocumentFilter.FilterBypass, int, int, String, AttributeSet) - Method in class org.scijava.ui.swing.widget.DocumentSizeFilter
 
replace(int, T) - Method in class org.scijava.util.LastRecentlyUsed
 
replaceToken(Token, String) - Method in class org.scijava.ui.swing.script.TokenFunctions
 
report(String) - Method in class org.scijava.util.Timing
 
reportLine(double, double, double, double) - Method in class org.scijava.tool.DefaultToolService
 
reportLine(double, double, double, double) - Method in interface org.scijava.tool.ToolService
Publishes line length and angle in the status bar.
reportLine(RealCoords, RealCoords) - Method in interface org.scijava.tool.ToolService
Publishes line length and angle in the status bar.
reportPoint(double, double) - Method in class org.scijava.tool.DefaultToolService
 
reportPoint(double, double) - Method in interface org.scijava.tool.ToolService
Publishes point coordinates to the status bar.
reportPoint(RealCoords) - Method in interface org.scijava.tool.ToolService
Publishes point coordinates to the status bar.
reportRectangle(double, double, double, double) - Method in class org.scijava.tool.DefaultToolService
 
reportRectangle(double, double, double, double) - Method in interface org.scijava.tool.ToolService
Publishes rectangle dimensions in the status bar.
reportRectangle(RealCoords, RealCoords) - Method in interface org.scijava.tool.ToolService
Publishes rectangle dimensions in the status bar.
repositories - Variable in class org.scijava.minimaven.MavenProject
 
requestFocus() - Method in interface org.scijava.ui.viewer.DisplayWindow
 
requestFocusInWindow() - Method in class org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor
 
requiresEDT() - Method in class org.scijava.ui.awt.AWTUI
 
requiresEDT() - Method in class org.scijava.ui.headless.HeadlessUI
 
requiresEDT() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
requiresEDT() - Method in interface org.scijava.ui.UserInterface
Returns true if this UI requires the EDT.
reset() - Method in class org.scijava.io.handle.DataHandleInputStream
 
reset() - Method in class org.scijava.options.OptionsPlugin
Clears option values from persistent storage.
reset() - Method in interface org.scijava.options.OptionsService
Clears all option values from persistent storage.
reset() - Method in class org.scijava.script.DefaultScriptInterpreter
 
reset() - Method in interface org.scijava.script.ScriptInterpreter
Clears the buffer of not-yet-evaluated lines of code, accumulated from previous calls to ScriptInterpreter.interpret(java.lang.String).
reset() - Method in class org.scijava.ui.swing.search.SwingSearchBar
Called on the EDT to terminate the search session.
reset() - Method in class org.scijava.util.Timing
 
resetStream() - Method in interface org.scijava.io.handle.ResettableStreamHandle
Resets the stream to its start.
resetStream() - Method in interface org.scijava.io.handle.StreamHandle
Resets the stream to its start.
resetStream() - Method in class org.scijava.io.http.HTTPHandle
 
ResettableStreamHandle<L extends Location> - Interface in org.scijava.io.handle
A DataHandle backed by an InputStream and/or OutputStream.
resetTabSize() - Method in class org.scijava.ui.swing.script.EditorPane
Reset tab size to current preferences.
resolve(Map<String, Object>, Map...) - Method in class org.scijava.grab.DefaultGrabService
 
resolve(Map<String, Object>, List, Map...) - Method in class org.scijava.grab.DefaultGrabService
 
resolve(Map<String, Object>, Map...) - Method in interface org.scijava.grab.GrabService
 
resolve(Map<String, Object>, List, Map...) - Method in interface org.scijava.grab.GrabService
 
resolve(URI) - Method in class org.scijava.io.http.HTTPLocationResolver
 
resolve(URI) - Method in class org.scijava.io.location.FileLocationResolver
 
resolve(URI) - Method in interface org.scijava.io.location.LocationResolver
Resolves the given URI to a Location
resolve(String) - Method in interface org.scijava.io.location.LocationService
Turns the given string into a URI, then resolves it to a Location.
resolve(URI) - Method in interface org.scijava.io.location.LocationService
Resolves the given URI to a location.
resolveInput(String) - Method in class org.scijava.module.AbstractModule
 
resolveInput(String) - Method in interface org.scijava.module.Module
Marks the input with the given name as resolved.
resolveOutput(String) - Method in class org.scijava.module.AbstractModule
 
resolveOutput(String) - Method in interface org.scijava.module.Module
Marks the output with the given name as resolved.
restore() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
restoreLocation() - Method in class org.scijava.ui.AbstractUserInterface
 
restoreLocation() - Method in class org.scijava.ui.headless.HeadlessUI
 
restoreLocation() - Method in interface org.scijava.ui.UserInterface
Restores the application frame's current location.
result - Variable in exception org.scijava.minimaven.JavaCompiler.CompileError
 
results() - Method in class org.scijava.search.SearchEvent
 
ResultsPostprocessor - Class in org.scijava.table.process
A postprocessor which aggregates simple output values into a single table, for a nicer UI experience.
ResultsPostprocessor() - Constructor for class org.scijava.table.process.ResultsPostprocessor
 
retainAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay
 
retainAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu
 
retainAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex
 
retainAll(Collection<?>) - Method in interface org.scijava.table.Table
Retains only the columns in the table that are contained in the specified collection.
retainAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed
 
retrieveList(Class<?>) - Method in class org.scijava.object.ObjectIndex
Retrieves the type list for the given type, creating it if necessary.
retrieveListsForType(Class<?>) - Method in class org.scijava.object.ObjectIndex
 
RETURN_VALUE - Static variable in class org.scijava.script.ScriptModule
 
RGB_CLASS_NAME - Static variable in class org.scijava.ui.swing.widget.SwingColorWidget
 
RichPlugin - Interface in org.scijava.plugin
Base interface for Contextual, Prioritized plugins that retain access to their associated PluginInfo metadata via the HasPluginInfo interface.
RIGHT_BUTTON - Static variable in class org.scijava.display.event.input.MsButtonEvent
 
RIGHT_DIV - Static variable in class org.scijava.parsington.Operators
 
RIGHT_DIV_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
RIGHT_SHIFT - Static variable in class org.scijava.parsington.Operators
 
RIGHT_SHIFT_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
rightDiv(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
rightDiv(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.RIGHT_DIV operator.
rightDivAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
rightDivAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.RIGHT_DIV_ASSIGN operator.
rightShift(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
rightShift(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
rightShift(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
rightShift(BigInteger, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
rightShift(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.RIGHT_SHIFT operator.
rightShiftAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
rightShiftAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.RIGHT_SHIFT_ASSIGN operator.
rmRF(File) - Static method in class org.scijava.minimaven.BuildEnvironment
 
ROSYBROWN - Static variable in class org.scijava.util.Colors
 
RoundBorder - Class in org.scijava.ui.behaviour.io.gui
 
RoundBorder(Color, Component, int) - Constructor for class org.scijava.ui.behaviour.io.gui.RoundBorder
 
rowDelimiter(String) - Method in class org.scijava.table.io.TableIOOptions
 
rowDelimiter() - Method in class org.scijava.table.io.TableIOOptions.Values
 
ROYALBLUE - Static variable in class org.scijava.util.Colors
 
run(ModuleInfo) - Method in interface org.scijava.batch.BatchService
Run the module described by ModuleInfo in batch.
run(ModuleInfo) - Method in class org.scijava.batch.FileBatchService
 
run() - Method in class org.scijava.batch.FileScriptBatchProcessor
 
run() - Method in class org.scijava.batch.MenuScriptBatchProcessor
 
run() - Method in class org.scijava.batch.ModuleBatchProcessor
 
run() - Method in class org.scijava.command.CommandModule
 
run(String, boolean, Object...) - Method in interface org.scijava.command.CommandService
Executes the first command of the given class name.
run(String, boolean, Map<String, Object>) - Method in interface org.scijava.command.CommandService
Executes the first command of the given class name.
run(Class<C>, boolean, Object...) - Method in interface org.scijava.command.CommandService
Executes the first command of the given class.
run(Class<C>, boolean, Map<String, Object>) - Method in interface org.scijava.command.CommandService
Executes the first command of the given class.
run(CommandInfo, boolean, Object...) - Method in interface org.scijava.command.CommandService
Executes the given command.
run(CommandInfo, boolean, Map<String, Object>) - Method in interface org.scijava.command.CommandService
Executes the given command.
run(String, boolean, Object...) - Method in class org.scijava.command.DefaultCommandService
 
run(String, boolean, Map<String, Object>) - Method in class org.scijava.command.DefaultCommandService
 
run(Class<C>, boolean, Object...) - Method in class org.scijava.command.DefaultCommandService
 
run(Class<C>, boolean, Map<String, Object>) - Method in class org.scijava.command.DefaultCommandService
 
run(CommandInfo, boolean, Object...) - Method in class org.scijava.command.DefaultCommandService
 
run(CommandInfo, boolean, Map<String, Object>) - Method in class org.scijava.command.DefaultCommandService
 
run(Object, Object...) - Method in class org.scijava.command.run.CommandCodeRunner
 
run(Object, Map<String, Object>) - Method in class org.scijava.command.run.CommandCodeRunner
 
run() - Method in class org.scijava.command.UnimplementedCommand
 
run(Object, Object...) - Method in class org.scijava.main.run.MainCodeRunner
 
run(Object, Map<String, Object>) - Method in class org.scijava.main.run.MainCodeRunner
 
run() - Method in class org.scijava.menu.ShadowMenu
Executes the module linked to this node.
run() - Method in class org.scijava.minimaven.ReadInto
 
run(ModuleInfo, boolean, Object...) - Method in class org.scijava.module.DefaultModuleService
 
run(ModuleInfo, boolean, Map<String, Object>) - Method in class org.scijava.module.DefaultModuleService
 
run(ModuleInfo, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Object...) - Method in class org.scijava.module.DefaultModuleService
 
run(ModuleInfo, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Map<String, Object>) - Method in class org.scijava.module.DefaultModuleService
 
run(M, boolean, Object...) - Method in class org.scijava.module.DefaultModuleService
 
run(M, boolean, Map<String, Object>) - Method in class org.scijava.module.DefaultModuleService
 
run(M, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Object...) - Method in class org.scijava.module.DefaultModuleService
 
run(M, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Map<String, Object>) - Method in class org.scijava.module.DefaultModuleService
 
run() - Method in class org.scijava.module.ModuleRunner
Executes the module, including pre- and post-processing and event notification.
run(ModuleInfo, boolean, Object...) - Method in interface org.scijava.module.ModuleService
Executes the given module.
run(ModuleInfo, boolean, Map<String, Object>) - Method in interface org.scijava.module.ModuleService
Executes the given module.
run(ModuleInfo, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Object...) - Method in interface org.scijava.module.ModuleService
Executes the given module.
run(ModuleInfo, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Map<String, Object>) - Method in interface org.scijava.module.ModuleService
Executes the given module.
run(M, boolean, Object...) - Method in interface org.scijava.module.ModuleService
Executes the given module.
run(M, boolean, Map<String, Object>) - Method in interface org.scijava.module.ModuleService
Executes the given module.
run(M, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Object...) - Method in interface org.scijava.module.ModuleService
Executes the given module.
run(M, List<? extends ModulePreprocessor>, List<? extends ModulePostprocessor>, Map<String, Object>) - Method in interface org.scijava.module.ModuleService
Executes the given module.
run() - Method in interface org.scijava.module.MutableModule
 
run(Object, Object...) - Method in class org.scijava.module.run.ModuleCodeRunner
 
run(Object, Map<String, Object>) - Method in class org.scijava.module.run.ModuleCodeRunner
 
run() - Method in class org.scijava.options.OptionsPlugin
 
run() - Method in class org.scijava.plugins.commands.debug.DumpStack
 
run() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder
 
run() - Method in class org.scijava.plugins.commands.debug.ShowSubscribers
 
run() - Method in class org.scijava.plugins.commands.debug.SystemInformation
 
run() - Method in class org.scijava.plugins.commands.debug.TextDisplayTest
 
run() - Method in class org.scijava.plugins.commands.display.Close
 
run() - Method in class org.scijava.plugins.commands.display.CloseAll
 
run() - Method in class org.scijava.plugins.commands.io.ClearRecent
 
run() - Method in class org.scijava.plugins.commands.io.OpenFile
 
run() - Method in class org.scijava.plugins.commands.script.RunScript
 
run(Object, Object...) - Method in interface org.scijava.run.CodeRunner
Executes the code identified by the given object, passing the specified arguments as inputs.
run(Object, Map<String, Object>) - Method in interface org.scijava.run.CodeRunner
Executes the code identified by the given object, passing the arguments in the specified map as inputs.
run(Object, Object...) - Method in interface org.scijava.run.RunService
Executes the given code using the most appropriate handler, passing the specified arguments as inputs.
run(Object, Map<String, Object>) - Method in interface org.scijava.run.RunService
Executes the given code using the most appropriate handler, passing the arguments in the specified map as inputs.
run(File, boolean, Object...) - Method in class org.scijava.script.DefaultScriptService
 
run(File, boolean, Map<String, Object>) - Method in class org.scijava.script.DefaultScriptService
 
run(ScriptInfo, boolean, Object...) - Method in class org.scijava.script.DefaultScriptService
 
run(ScriptInfo, boolean, Map<String, Object>) - Method in class org.scijava.script.DefaultScriptService
 
run(Object, Object...) - Method in class org.scijava.script.run.ScriptCodeRunner
 
run(Object, Map<String, Object>) - Method in class org.scijava.script.run.ScriptCodeRunner
 
run() - Method in class org.scijava.script.ScriptModule
 
run(File, boolean, Object...) - Method in interface org.scijava.script.ScriptService
Executes the script in the given file.
run(File, boolean, Map<String, Object>) - Method in interface org.scijava.script.ScriptService
Executes the script in the given file.
run(String, String, boolean, Object...) - Method in interface org.scijava.script.ScriptService
Executes the given script.
run(String, String, boolean, Map<String, Object>) - Method in interface org.scijava.script.ScriptService
Executes the given script.
run(String, Reader, boolean, Object...) - Method in interface org.scijava.script.ScriptService
Executes the given script.
run(String, Reader, boolean, Map<String, Object>) - Method in interface org.scijava.script.ScriptService
Executes the given script.
run(ScriptInfo, boolean, Object...) - Method in interface org.scijava.script.ScriptService
Executes the given script.
run(ScriptInfo, boolean, Map<String, Object>) - Method in interface org.scijava.script.ScriptService
Executes the given script.
run() - Method in class org.scijava.search.DefaultSearchAction
 
run() - Method in class org.scijava.table.io.ExportTableCommand
 
run(Runnable) - Method in class org.scijava.task.DefaultTask
 
run(Runnable) - Method in interface org.scijava.task.Task
Starts running the task.
run(Callable<V>) - Method in class org.scijava.thread.DefaultThreadService
 
run(Runnable) - Method in class org.scijava.thread.DefaultThreadService
 
run(Callable<V>) - Method in interface org.scijava.thread.ThreadService
Asynchronously executes the given code in a new thread, as decided by the thread service.
run(Runnable) - Method in interface org.scijava.thread.ThreadService
Asynchronously executes the given code in a new thread, as decided by the thread service.
run() - Method in class org.scijava.ui.behaviour.util.RunnableAction
 
run() - Method in class org.scijava.ui.swing.commands.CommandFinder
 
run() - Method in class org.scijava.ui.swing.commands.DialogPromptDemo
 
run() - Method in class org.scijava.ui.swing.commands.InspectObjects
 
run() - Method in class org.scijava.ui.swing.commands.WatchEvents
 
run() - Method in class org.scijava.ui.swing.console.ShowConsole
 
run() - Method in class org.scijava.ui.swing.mdi.WindowsTileVertical
 
run() - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
 
run() - Method in class org.scijava.ui.swing.script.commands.ChooseFontSize
 
run() - Method in class org.scijava.ui.swing.script.commands.ChooseTabSize
 
run() - Method in class org.scijava.ui.swing.script.commands.GitGrep
 
run() - Method in class org.scijava.ui.swing.script.commands.KillScript
 
run() - Method in class org.scijava.ui.swing.script.ScriptEditor
 
run() - Method in class org.scijava.ui.swing.script.ScriptInterpreterPlugin
 
run() - Method in class org.scijava.ui.swing.script.TextEditor.FindClassSourceAndJavadoc
 
run() - Method in class org.scijava.util.MirrorWebsite
 
run() - Method in class org.scijava.util.ReadInto
The main method.
runAction(SearchAction, boolean) - Method in class org.scijava.ui.swing.search.SwingSearchBar
Called on the EDT to run an action.
RunArgument - Class in org.scijava.command.console
Deprecated.
Use RunArgument instead.
RunArgument() - Constructor for class org.scijava.command.console.RunArgument
Deprecated.
 
RunArgument - Class in org.scijava.run.console
Handles the --run command line argument.
RunArgument() - Constructor for class org.scijava.run.console.RunArgument
 
runBatch() - Method in class org.scijava.ui.swing.script.TextEditor
Run current script with the batch processor
RunModuleSearchActionFactory - Class in org.scijava.search.module
Search action for executing a SciJava module.
RunModuleSearchActionFactory() - Constructor for class org.scijava.search.module.RunModuleSearchActionFactory
 
runnableAction(Runnable, String, String...) - Method in class org.scijava.ui.behaviour.util.Actions
Create and install a new Action with the specified name that calls the specified Runnable when triggered.
RunnableAction - Class in org.scijava.ui.behaviour.util
 
RunnableAction(String, Runnable) - Constructor for class org.scijava.ui.behaviour.util.RunnableAction
 
RunScript - Class in org.scijava.plugins.commands.script
Executes the script in the given file.
RunScript() - Constructor for class org.scijava.plugins.commands.script.RunScript
 
runScript() - Method in class org.scijava.ui.swing.script.TextEditor
 
RunScriptArgument - Class in org.scijava.script.console
Deprecated.
Use RunArgument instead.
RunScriptArgument() - Constructor for class org.scijava.script.console.RunScriptArgument
Deprecated.
 
RunService - Interface in org.scijava.run
Interface for service that manages available CodeRunner plugins.
RunSnippetActionFactory - Class in org.scijava.search.snippet
Search action for executing a code snippet.
RunSnippetActionFactory() - Constructor for class org.scijava.search.snippet.RunSnippetActionFactory
 
runText() - Method in class org.scijava.ui.swing.script.TextEditor
Run the text in the textArea without compiling it, only if it's not java.
runText(boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 

S

SADDLEBROWN - Static variable in class org.scijava.util.Colors
 
safeMultiply32(long...) - Static method in class org.scijava.util.ArrayUtils
Checks that the product of the given sizes does not exceed the 32-bit integer limit (i.e., Integer.MAX_VALUE).
safeMultiply64(long...) - Static method in class org.scijava.util.ArrayUtils
Checks that the product of the given sizes does not exceed the 64-bit integer limit (i.e., Long.MAX_VALUE).
SALMON - Static variable in class org.scijava.util.Colors
 
samePrefix(String, String) - Static method in class org.scijava.util.StringUtils
Checks if two filenames have the same prefix.
SANDYBROWN - Static variable in class org.scijava.util.Colors
 
sanitize(String) - Static method in class org.scijava.util.StringUtils
Removes unprintable characters from the given string.
sanitizeDouble(String) - Static method in class org.scijava.util.StringUtils
Normalizes the decimal separator for the user's locale.
save(D, String) - Method in class org.scijava.io.AbstractIOPlugin
 
save(D, String) - Method in class org.scijava.io.AbstractTypedIOService
 
save(D, Location) - Method in class org.scijava.io.AbstractTypedIOService
 
save(Object, String) - Method in class org.scijava.io.DefaultIOService
 
save(Object, Location) - Method in class org.scijava.io.DefaultIOService
 
save(D, String) - Method in interface org.scijava.io.IOPlugin
Saves the given data to the specified destination.
save(D, Location) - Method in interface org.scijava.io.IOPlugin
Saves the given data to the specified location.
save(Object, String) - Method in interface org.scijava.io.IOService
Saves data to the given destination.
save(Object, Location) - Method in interface org.scijava.io.IOService
Saves data to the given location.
save(D, String) - Method in interface org.scijava.io.TypedIOService
Saves data to the given destination.
save(D, Location) - Method in interface org.scijava.io.TypedIOService
Saves data to the given location.
save(ModuleItem<T>, T) - Method in class org.scijava.module.DefaultModuleService
 
save(ModuleItem<T>, T) - Method in interface org.scijava.module.ModuleService
Registers the given value for the given ModuleItem using the PrefService.
save() - Method in class org.scijava.options.OptionsPlugin
Saves option values to persistent storage.
save(Table, Location, TableIOOptions) - Method in class org.scijava.table.DefaultTableIOPlugin
 
save(Table<?, ?>, String, TableIOOptions) - Method in class org.scijava.table.io.DefaultTableIOService
 
save(Table<?, ?>, Location, TableIOOptions) - Method in class org.scijava.table.io.DefaultTableIOService
 
save(Table, Location) - Method in interface org.scijava.table.io.TableIOPlugin
 
save(Table<?, ?>, Location, TableIOOptions) - Method in interface org.scijava.table.io.TableIOPlugin
Saves the given data to the specified destination.
save(Table<?, ?>, Location) - Method in interface org.scijava.table.io.TableIOService
 
save(Table<?, ?>, String, TableIOOptions) - Method in interface org.scijava.table.io.TableIOService
 
save(Table<?, ?>, Location, TableIOOptions) - Method in interface org.scijava.table.io.TableIOService
 
save() - Method in class org.scijava.ui.swing.script.TextEditor
 
SAVE_STYLE - Static variable in interface org.scijava.widget.FileWidget
Widget style for file saver dialogs.
saveAs() - Method in class org.scijava.ui.swing.script.TextEditor
 
saveAs(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
saveAs(String, boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
saveChecksum(Location, String) - Method in class org.scijava.download.DiskLocationCache
 
saveChecksum(Location, String) - Method in interface org.scijava.download.LocationCache
Associates the given checksum value with the specified source location.
saveInputs() - Method in class org.scijava.command.DynamicCommand
Persists current input values.
saveInputs(Module) - Method in class org.scijava.module.DefaultModuleService
 
saveInputs(Module) - Method in interface org.scijava.module.ModuleService
Saves values to persistent storage from the given Module.
SaveInputsPreprocessor - Class in org.scijava.module.process
A preprocessor for saving populated input values to persistent storage.
SaveInputsPreprocessor() - Constructor for class org.scijava.module.process.SaveInputsPreprocessor
 
saveLocation() - Method in class org.scijava.ui.AbstractUserInterface
 
saveLocation() - Method in class org.scijava.ui.headless.HeadlessUI
 
saveLocation() - Method in interface org.scijava.ui.UserInterface
Persists the application frame's current location.
savePreferences(String) - Method in class org.scijava.ui.swing.script.EditorPane
Retrieves and saves the preferences to the persistent store
saveValue(T) - Method in class org.scijava.module.AbstractModuleItem
Deprecated.
saveValue(T) - Method in interface org.scijava.module.ModuleItem
Deprecated. 
saveWindowSizeToPrefs() - Method in class org.scijava.ui.swing.script.TextEditor
Saves the Script Editor layout to persisted storage.
ScalaScriptEngine - Class in org.scijava.plugins.scripting.scala
Scala interpreter
ScalaScriptEngine(ScriptEngine) - Constructor for class org.scijava.plugins.scripting.scala.ScalaScriptEngine
 
ScalaScriptLanguage - Class in org.scijava.plugins.scripting.scala
An adapter of the Scala interpreter to the SciJava scripting interface.
ScalaScriptLanguage() - Constructor for class org.scijava.plugins.scripting.scala.ScalaScriptLanguage
 
SciJava - Class in org.scijava
Main entry point into SciJava.
SciJava() - Constructor for class org.scijava.SciJava
Creates a new SciJava application context with all available services.
SciJava(boolean) - Constructor for class org.scijava.SciJava
Creates a new Scijava application context.
SciJava(Class...) - Constructor for class org.scijava.SciJava
Creates a new SciJava application context with the specified services (and any required service dependencies).
SciJava(Collection<Class<? extends Service>>) - Constructor for class org.scijava.SciJava
Creates a new SciJava application context with the specified services (and any required service dependencies).
SciJava(Context) - Constructor for class org.scijava.SciJava
Creates a new SciJava application context which wraps the given existing SciJava context.
SciJavaApp - Class in org.scijava.app
Application metadata about SciJava Common.
SciJavaApp() - Constructor for class org.scijava.app.SciJavaApp
 
SciJavaEvent - Class in org.scijava.event
Base class for all SciJava events.
SciJavaEvent() - Constructor for class org.scijava.event.SciJavaEvent
 
SciJavaPlugin - Interface in org.scijava.plugin
Top-level interface for plugins.
SciJavaService - Interface in org.scijava.service
Marker interface for core SciJava Common Services.
scope - Variable in class org.scijava.minimaven.Coordinate
 
screen - Variable in class org.scijava.ui.swing.script.TextEditorTab
 
screenAboutToSleep(ScreenSleepEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
screenAwoke(ScreenSleepEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
ScreenOutputStream() - Constructor for class org.scijava.ui.swing.script.FileFunctions.ScreenOutputStream
 
script() - Method in class org.scijava.AbstractGateway
 
script() - Method in interface org.scijava.Gateway
Gets this application context's ScriptService.
ScriptCallback - Interface in org.scijava.script.process
A routine which will be invoked just prior to script execution.
ScriptCodeRunner - Class in org.scijava.script.run
Runs the given script.
ScriptCodeRunner() - Constructor for class org.scijava.script.run.ScriptCodeRunner
 
scriptContext - Variable in class org.scijava.script.AbstractScriptEngine
 
ScriptDirectiveScriptProcessor - Class in org.scijava.script.process
A ScriptProcessor which parses the #@script directive.
ScriptDirectiveScriptProcessor() - Constructor for class org.scijava.script.process.ScriptDirectiveScriptProcessor
 
ScriptEditor - Class in org.scijava.ui.swing.script
The Script Editor.
ScriptEditor() - Constructor for class org.scijava.ui.swing.script.ScriptEditor
 
scriptFileCallback() - Method in class org.scijava.batch.FileScriptBatchProcessor
 
ScriptFileDragAndDropHandler - Class in org.scijava.ui.dnd
Drag-and-drop handler for script files.
ScriptFileDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.ScriptFileDragAndDropHandler
 
ScriptFinder - Class in org.scijava.script
Discovers scripts.
ScriptFinder(Context) - Constructor for class org.scijava.script.ScriptFinder
Creates a new script finder.
ScriptFinder(Context, String) - Constructor for class org.scijava.script.ScriptFinder
Creates a new script finder.
ScriptFinder(ScriptService) - Constructor for class org.scijava.script.ScriptFinder
Deprecated.
ScriptHeader - Interface in org.scijava.script
Represents one or more canned lines intended to go at the top of scripts of a given language.
ScriptHeaderService - Interface in org.scijava.script
Interface for a HandlerService capable of mapping ScriptLanguages to ScriptHeaders.
ScriptInfo - Class in org.scijava.script
Metadata about a script.
ScriptInfo(Context, File) - Constructor for class org.scijava.script.ScriptInfo
Creates a script metadata object which describes the given script file.
ScriptInfo(Context, String) - Constructor for class org.scijava.script.ScriptInfo
Creates a script metadata object which describes the given script file.
ScriptInfo(Context, URL, String) - Constructor for class org.scijava.script.ScriptInfo
Creates a script metadata object which describes a script at the given URL.
ScriptInfo(Context, String, Reader) - Constructor for class org.scijava.script.ScriptInfo
Creates a script metadata object which describes a script provided by the given Reader.
ScriptInfoWidget<U> - Interface in org.scijava.batch
 
ScriptInterpreter - Interface in org.scijava.script
The contract for script interpreters.
ScriptInterpreterPlugin - Class in org.scijava.ui.swing.script
A GUI for the script engines.
ScriptInterpreterPlugin() - Constructor for class org.scijava.ui.swing.script.ScriptInterpreterPlugin
 
ScriptIOPlugin - Class in org.scijava.script.io
IOPlugin for scripts.
ScriptIOPlugin() - Constructor for class org.scijava.script.io.ScriptIOPlugin
 
ScriptLanguage - Interface in org.scijava.script
The base interface for scripting language adapters.
ScriptLanguageIndex - Class in org.scijava.script
Data structure for managing registered scripting languages.
ScriptLanguageIndex() - Constructor for class org.scijava.script.ScriptLanguageIndex
Deprecated.
ScriptLanguageIndex(LogService) - Constructor for class org.scijava.script.ScriptLanguageIndex
Instantiates an index of the available script languages.
ScriptModule - Class in org.scijava.script
A Module which executes a script.
ScriptModule(ScriptInfo) - Constructor for class org.scijava.script.ScriptModule
 
ScriptProcessor - Interface in org.scijava.script.process
A script processor defines some sort of processing that primes a particular script for execution.
ScriptProcessorService - Interface in org.scijava.script.process
Interface for service that processes scripts.
ScriptREPL - Class in org.scijava.script
A REPL for SciJava script engines, which allows dynamic language switching.
ScriptREPL(Context) - Constructor for class org.scijava.script.ScriptREPL
 
ScriptREPL(Context, OutputStream) - Constructor for class org.scijava.script.ScriptREPL
 
ScriptREPL(Context, String) - Constructor for class org.scijava.script.ScriptREPL
 
ScriptREPL(Context, String, OutputStream) - Constructor for class org.scijava.script.ScriptREPL
 
SCRIPTS_PATH_PROPERTY - Static variable in interface org.scijava.script.ScriptService
System property for overriding the list of directories to scan for scripts.
SCRIPTS_RESOURCE_DIR - Static variable in interface org.scijava.script.ScriptService
Base directory for discovering scripts, including within classpath resources as well as beneath the application base directory.
ScriptService - Interface in org.scijava.script
Interface for service that works with scripts.
scroll(double, boolean, int, int) - Method in interface org.scijava.ui.behaviour.ScrollBehaviour
The mouse-wheel was scrolled by the specified amount horizontally or vertically, while the mouse pointer was at the specified location.
scroll - Variable in class org.scijava.ui.swing.script.TextEditorTab
 
SCROLL_BAR_STYLE - Static variable in interface org.scijava.widget.NumberWidget
Widget style for scroll bar with spinner.
SCROLL_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
ScrollBehaviour - Interface in org.scijava.ui.behaviour
 
scrolls - Variable in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
scrollToBottom(JScrollPane) - Static method in class org.scijava.ui.swing.StaticSwingUtils
Scrolls the given JScrollPane to its bottom left corner.
scrollToVisible(int) - Method in class org.scijava.ui.swing.script.ErrorHandler
 
SEAGREEN - Static variable in class org.scijava.util.Colors
 
search(String, boolean) - Method in class org.scijava.search.classes.ClassesSearcher
 
search(String) - Method in class org.scijava.search.DefaultSearchOperation
 
search(String, boolean) - Method in class org.scijava.search.module.ModuleSearcher
 
search(String, boolean) - Method in interface org.scijava.search.Searcher
Searches for the given text.
search(String) - Method in interface org.scijava.search.SearchOperation
Asynchronously updates the search query.
search(SearchListener...) - Method in interface org.scijava.search.SearchService
Begins an asynchronous and multi-threaded search operation.
search(String, boolean) - Method in class org.scijava.search.snippet.SnippetSearcher
 
search(String, boolean) - Method in class org.scijava.search.template.TemplateSearcher
 
search(String, boolean) - Method in class org.scijava.search.web.BISESearcher
 
search(String, boolean) - Method in class org.scijava.search.web.ImageForumSearcher
 
search(String, boolean) - Method in class org.scijava.search.web.ImageJWikiSearcher
 
SearchAction - Interface in org.scijava.search
An action which can be executed on a SearchResult.
SearchActionFactory - Interface in org.scijava.search
SciJava plugin type for doing something with a SearchResult.
searchCompleted(SearchEvent) - Method in interface org.scijava.search.SearchListener
Invoked when a search is completed.
Searcher - Interface in org.scijava.search
SciJava plugin type for discovering search results of a particular sort.
searcher() - Method in class org.scijava.search.SearchEvent
 
SearchEvent - Class in org.scijava.search
An event housing the results of a search.
SearchEvent(Searcher, List<SearchResult>, boolean) - Constructor for class org.scijava.search.SearchEvent
 
searchField - Variable in class org.scijava.ui.swing.commands.CommandFinderPanel
 
SearchListener - Interface in org.scijava.search
An object to be notified when a Searcher completes a search and produces results.
SearchOperation - Interface in org.scijava.search
High-level entry point into searching.
searchOrReplace(boolean) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
searchOrReplace(boolean, boolean) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
searchOrReplaceFromHere(boolean) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
searchOrReplaceFromHere(boolean, boolean) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
SearchResult - Interface in org.scijava.search
Data container for one item of a search result.
SearchService - Interface in org.scijava.search
A service that performs asynchronous searches.
SEASHELL - Static variable in class org.scijava.util.Colors
 
seek(long) - Method in class org.scijava.download.MultiWriteHandle
 
seek(long) - Method in class org.scijava.io.handle.AbstractSeekableStreamHandle
 
seek(long) - Method in class org.scijava.io.handle.BytesHandle
 
seek(long) - Method in interface org.scijava.io.handle.DataHandle
Sets the stream offset, measured from the beginning of the stream, at which the next read or write occurs.
seek(long) - Method in class org.scijava.io.handle.DummyHandle
 
seek(long) - Method in class org.scijava.io.handle.FileHandle
 
seek(long) - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
seek(long) - Method in interface org.scijava.io.handle.ResettableStreamHandle
 
seek(long) - Method in interface org.scijava.io.handle.SeekableStreamHandle
 
seek(long) - Method in interface org.scijava.io.handle.StreamHandle
 
seek(long) - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
SeekableStreamHandle<L extends Location> - Interface in org.scijava.io.handle
A DataHandle backed by an InputStream and/or OutputStream.
selectedTags - Variable in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
SEPARATOR - Static variable in class org.scijava.log.LogSource
 
SEPARATOR_DISTANCE - Static variable in interface org.scijava.tool.ToolService
 
service(Class<S>) - Method in class org.scijava.Context
Gets the service of the given class.
service(String) - Method in class org.scijava.Context
Gets the service of the given class name (useful for scripts).
Service - Interface in org.scijava.service
A SciJava service, for a particular area of functionality.
serviceClassList(Class...) - Static method in class org.scijava.Context
Utility method for converting a varargs list of service classes to a List of those classes.
ServiceCombiner - Class in org.scijava.util
Combines Service information from all JAR files on the classpath.
ServiceCombiner() - Constructor for class org.scijava.util.ServiceCombiner
 
ServiceHelper - Class in org.scijava.service
Helper class for discovering and instantiating available services.
ServiceHelper(Context) - Constructor for class org.scijava.service.ServiceHelper
Creates a new service helper for discovering and instantiating services.
ServiceHelper(Context, Collection<Class<? extends Service>>) - Constructor for class org.scijava.service.ServiceHelper
Creates a new service helper for discovering and instantiating services.
ServiceHelper(Context, Collection<Class<? extends Service>>, boolean) - Constructor for class org.scijava.service.ServiceHelper
Creates a new service helper for discovering and instantiating services.
ServiceIndex - Class in org.scijava.service
Data structure for tracking registered services.
ServiceIndex() - Constructor for class org.scijava.service.ServiceIndex
 
ServicePreprocessor - Class in org.scijava.module.process
The service preprocessor automatically populates module inputs that implement Service.
ServicePreprocessor() - Constructor for class org.scijava.module.process.ServicePreprocessor
 
ServicesLoadedEvent - Class in org.scijava.service.event
An event which fires when a Context finishes initializing all its services.
ServicesLoadedEvent() - Constructor for class org.scijava.service.event.ServicesLoadedEvent
 
set(String, String) - Method in class org.scijava.AbstractBasicDetails
 
set(String, String) - Method in interface org.scijava.BasicDetails
Sets the value of the given key.
set(WidgetModel) - Method in class org.scijava.batch.SwingScriptInfoWidget
 
set(int, T) - Method in class org.scijava.display.AbstractDisplay
 
set(FileLocation) - Method in class org.scijava.io.handle.FileHandle
 
set(Variable, Object) - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
set(Variable, Object) - Method in interface org.scijava.parsington.eval.Evaluator
Sets the value of the given variable.
set(int) - Method in class org.scijava.parsington.Position
 
set(D) - Method in class org.scijava.plugin.AbstractWrapperPlugin
 
set(D) - Method in interface org.scijava.plugin.WrapperPlugin
Associates the given data object with this plugin.
set(String, int, T) - Method in class org.scijava.table.AbstractTable
 
set(int, int, T) - Method in interface org.scijava.table.Table
Sets the table value at the given column and row.
set(String, int, T) - Method in interface org.scijava.table.Table
Sets the table value at the given column and row.
set(int, C) - Method in interface org.scijava.table.Table
Replaces the column at the specified position in the table with the specified column.
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTButtonWidget
 
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTChoiceWidget
 
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTInputWidget
 
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTObjectWidget
 
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTTextWidget
 
set(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTToggleWidget
 
set(InputTriggerConfig) - Method in class org.scijava.ui.behaviour.io.InputTriggerConfig
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingButtonWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingInputWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
set(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingToggleWidget
 
set(int, BaseType) - Method in class org.scijava.util.AbstractPrimitiveArray
 
set(int, Boolean) - Method in class org.scijava.util.BoolArray
 
set(int, Byte) - Method in class org.scijava.util.ByteArray
 
set(int, Character) - Method in class org.scijava.util.CharArray
 
set(int, Double) - Method in class org.scijava.util.DoubleArray
 
set(int, Float) - Method in class org.scijava.util.FloatArray
 
set(int, Integer) - Method in class org.scijava.util.IntArray
 
set(int, Long) - Method in class org.scijava.util.LongArray
 
set(int, E) - Method in class org.scijava.util.ObjectArray
 
set(int, Short) - Method in class org.scijava.util.ShortArray
 
set(WidgetModel) - Method in class org.scijava.widget.AbstractInputWidget
 
set(WidgetModel) - Method in interface org.scijava.widget.InputWidget
Initializes the widget to use the given widget model.
setAccelerator(Accelerator) - Method in class org.scijava.MenuEntry
 
setAcceptableTags(Collection<String>) - Method in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
setAccepted(boolean) - Method in class org.scijava.ui.dnd.event.DragEnterEvent
Sets whether the drag operation is valid.
setAccessibilityIgnored(boolean) - Method in class org.scijava.util.ReflectedUniverse
Sets whether access modifiers (protected, private, etc.) are ignored.
setAction(String) - Method in class org.scijava.ui.behaviour.io.InputTriggerDescription
 
setActive(boolean) - Method in class org.scijava.event.DefaultEventHistory
 
setActive(boolean) - Method in interface org.scijava.event.EventHistory
Activates or deactivates event history tracking.
setActiveDisplay(Display<?>) - Method in class org.scijava.display.DefaultDisplayService
 
setActiveDisplay(Display<?>) - Method in interface org.scijava.display.DisplayService
Set the active display.
setActiveTool(Tool) - Method in class org.scijava.tool.DefaultToolService
 
setActiveTool(Tool) - Method in interface org.scijava.tool.ToolService
 
setAll(Map<? extends String, ? extends Object>) - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
setAll(Map<? extends String, ? extends Object>) - Method in interface org.scijava.parsington.eval.Evaluator
Assigns variables en masse.
setAllSize(Dimension) - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
Sets all component size properties ( maximum, minimum, preferred) to the given dimension.
setAllSize(int, int) - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
Sets all component size properties ( maximum, minimum, preferred) to the given width and height.
setAlpha(int, int, int) - Method in class org.scijava.ui.ARGBPlane
 
setARGB(int, int, int) - Method in class org.scijava.ui.ARGBPlane
 
setArrangement(Arrangeable.Arrangement) - Method in interface org.scijava.ui.Arrangeable
 
setArrangement(Arrangeable.Arrangement) - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
 
setArray(boolean[]) - Method in class org.scijava.util.BoolArray
 
setArray(byte[]) - Method in class org.scijava.util.ByteArray
 
setArray(char[]) - Method in class org.scijava.util.CharArray
 
setArray(double[]) - Method in class org.scijava.util.DoubleArray
 
setArray(float[]) - Method in class org.scijava.util.FloatArray
 
setArray(int[]) - Method in class org.scijava.util.IntArray
 
setArray(long[]) - Method in class org.scijava.util.LongArray
 
setArray(E[]) - Method in class org.scijava.util.ObjectArray
 
setArray(ArrayType) - Method in interface org.scijava.util.PrimitiveArray
Sets the fixed-size array backing this instance.
setArray(short[]) - Method in class org.scijava.util.ShortArray
 
setAttribute(String, Object, int) - Method in class org.scijava.script.AbstractScriptContext
 
setAutoCompletionEnabled(boolean) - Method in class org.scijava.ui.swing.script.EditorPane
 
setAutoFill(boolean) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setAutoFill(boolean) - Method in interface org.scijava.module.MutableModuleItem
 
setBaseDirectory(File) - Method in class org.scijava.download.DiskLocationCache
 
setBehaviourMap(BehaviourMap) - Method in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
setBindings(Bindings, int) - Method in class org.scijava.script.AbstractScriptContext
 
setBindings(Bindings, int) - Method in class org.scijava.script.AbstractScriptEngine
 
setBindings(Bindings, int) - Method in class org.scijava.script.AdaptedScriptEngine
 
setBlue(int, int, int) - Method in class org.scijava.ui.ARGBPlane
 
setButtonPanelVisible(boolean) - Method in class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
 
setByte(long, byte) - Method in class org.scijava.io.ByteArrayByteBank
 
setByte(long, byte) - Method in interface org.scijava.io.ByteBank
Sets the byte at the given position
setByte(long, byte) - Method in class org.scijava.io.nio.ByteBufferByteBank
 
setBytes(long, byte[], int, int) - Method in class org.scijava.io.ByteArrayByteBank
 
setBytes(long, byte[], int, int) - Method in interface org.scijava.io.ByteBank
Sets the bytes starting form the given position to the values form the provided array.
setBytes(long, byte[], int, int) - Method in class org.scijava.io.nio.ByteBufferByteBank
 
setCallback(String) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setCallback(String) - Method in interface org.scijava.module.MutableModuleItem
 
setCallingThread(Thread) - Method in class org.scijava.event.SciJavaEvent
Sets the thread that published the event.
setCaret() - Method in class org.scijava.ui.swing.script.Bookmark
 
setChecked(boolean) - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
setChoices(List<? extends T>) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setChoices(List<? extends T>) - Method in interface org.scijava.module.MutableModuleItem
 
setClassName(String) - Method in class org.scijava.ui.swing.script.TokenFunctions
 
setColumnCount(int) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setColumnCount(int) - Method in interface org.scijava.module.MutableModuleItem
 
setColumnCount(int) - Method in class org.scijava.table.AbstractTable
 
setColumnCount(int) - Method in interface org.scijava.table.Table
Sets the number of columns in the table.
setColumnHeader(int, String) - Method in interface org.scijava.table.Table
Sets the column header at the given column.
setColumnWidths(TableColumnModel) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
setConsumed(boolean) - Method in class org.scijava.event.SciJavaEvent
 
setContent(DisplayPanel) - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
setContent(DisplayPanel) - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
setContent(DisplayPanel) - Method in interface org.scijava.ui.viewer.DisplayWindow
 
setContext(Context) - Method in class org.scijava.command.CommandModule
 
setContext(Context) - Method in class org.scijava.command.DynamicCommand
 
setContext(Context) - Method in class org.scijava.command.ModuleCommand
 
setContext(Context) - Method in interface org.scijava.Contextual
Sets the application context to which the object belongs.
setContext(ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine
 
setContext(ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine
 
setContext(Context) - Method in class org.scijava.script.ScriptInfo
 
setContext(Context) - Method in class org.scijava.script.ScriptModule
 
setContext(Context) - Method in class org.scijava.service.AbstractService
 
setContexts(String[]) - Method in class org.scijava.ui.behaviour.io.InputTriggerDescription
 
setCurrent(int) - Method in class org.scijava.ui.swing.script.ErrorHandler
 
setData(Object) - Method in class org.scijava.plugins.commands.io.OpenFile
 
setData(List<ModuleInfo>) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
setDebug(boolean) - Method in class org.scijava.minimaven.BuildEnvironment
 
setDefaultUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService
 
setDefaultUI(UserInterface) - Method in interface org.scijava.ui.UIService
Sets the default user interface.
setDefaultValue(T) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setDefaultValue(T) - Method in interface org.scijava.module.MutableModuleItem
 
setDelegateService(ConvertService, double) - Static method in class org.scijava.util.ConversionUtils
Deprecated.
Sets the ConvertService to use for handling conversion requests.
setDelegateService(PrefService, double) - Static method in class org.scijava.util.Prefs
Deprecated.
Sets the PrefService
setDescription(String) - Method in class org.scijava.AbstractBasicDetails
 
setDescription(String) - Method in interface org.scijava.BasicDetails
Sets a string describing the object.
setDescription(String) - Method in class org.scijava.command.DynamicCommandInfo
 
setDescription(String) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setDimensions(int, int) - Method in interface org.scijava.table.Table
Sets the number of columns and rows in the table.
setDisableChecksums(boolean) - Method in class org.scijava.grab.DefaultGrabService
 
setDisableChecksums(boolean) - Method in interface org.scijava.grab.GrabService
Sets global flag to ignore checksums.
setEditorPaneFileName(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
setEditorPaneFileName(File) - Method in class org.scijava.ui.swing.script.TextEditor
 
setEnableAutoDownload(boolean) - Method in class org.scijava.grab.DefaultGrabService
 
setEnableAutoDownload(boolean) - Method in interface org.scijava.grab.GrabService
This toggles the auto download feature.
setEnabled(boolean) - Method in class org.scijava.AbstractUIDetails
 
setEnabled(boolean) - Method in class org.scijava.command.DynamicCommandInfo
 
setEnabled(Searcher, boolean) - Method in class org.scijava.search.DefaultSearchService
 
setEnabled(Searcher, boolean) - Method in interface org.scijava.search.SearchService
Enables or disables the given searcher plugin.
setEnabled(boolean) - Method in interface org.scijava.UIDetails
Sets whether the object should be enabled in the user interface.
setEncoding(String) - Method in class org.scijava.io.handle.AbstractDataHandle
 
setEncoding(String) - Method in interface org.scijava.io.handle.DataHandle
Sets the native encoding of the stream.
setErrorHandler(ErrorHandler) - Method in class org.scijava.ui.swing.script.TextEditor
 
setErrorScreen(JTextArea) - Method in class org.scijava.ui.swing.script.TextEditor
 
setErrorWriter(Writer) - Method in class org.scijava.script.AbstractScriptContext
 
setErrorWriter(Writer) - Method in class org.scijava.script.ScriptModule
Sets the writer used to record the standard error stream.
setExecutor(TextEditor.Executer) - Method in class org.scijava.ui.swing.script.TextEditorTab
 
setExecutorService(ExecutorService) - Method in class org.scijava.thread.DefaultThreadService
 
setExecutorService(ExecutorService) - Method in interface org.scijava.thread.ThreadService
setFileFilter(FileFilter) - Method in class org.scijava.ui.swing.script.FileSystemTree
 
setFileLocationCachingEnabled(boolean) - Method in class org.scijava.download.DiskLocationCache
 
setFileName(String) - Method in class org.scijava.ui.swing.script.EditorPane
Set the name to use for new files.
setFileName(File) - Method in class org.scijava.ui.swing.script.EditorPane
TODO
setFirstRun(boolean) - Method in class org.scijava.welcome.DefaultWelcomeService
 
setFirstRun(boolean) - Method in interface org.scijava.welcome.WelcomeService
Sets a preference recording whether this version of the dominant SJC application has run.
setFocus(Component) - Method in class org.scijava.ui.swing.SwingDialog
Sets the Component that will have the initial keyboard focus.
setFontSize(float) - Method in class org.scijava.ui.swing.script.EditorPane
Set the font size for this editor.
setFontSize(float) - Method in class org.scijava.ui.swing.script.TextEditor
 
setFuzzy(boolean) - Method in class org.scijava.search.DefaultSearchOperation
 
setFuzzy(boolean) - Method in interface org.scijava.search.SearchOperation
Asynchronously toggles whether to perform "fuzzy" matching of the query string.
setGitDirectory(File) - Method in class org.scijava.ui.swing.script.EditorPane
Set this EditorPanes git directory.
setGrabEnabled(boolean) - Method in class org.scijava.grab.DefaultGrabService
 
setGrabEnabled(boolean) - Method in interface org.scijava.grab.GrabService
This is a static access kill-switch.
setGreen(int, int, int) - Method in class org.scijava.ui.ARGBPlane
 
setHeader(String) - Method in class org.scijava.table.BoolColumn
 
setHeader(String) - Method in class org.scijava.table.ByteColumn
 
setHeader(String) - Method in class org.scijava.table.CharColumn
 
setHeader(String) - Method in interface org.scijava.table.Column
Sets the header of this column.
setHeader(String) - Method in class org.scijava.table.DefaultColumn
 
setHeader(String) - Method in class org.scijava.table.DoubleColumn
 
setHeader(String) - Method in class org.scijava.table.FloatColumn
 
setHeader(String) - Method in class org.scijava.table.IntColumn
 
setHeader(String) - Method in class org.scijava.table.LongColumn
 
setHeader(String) - Method in class org.scijava.table.ShortColumn
 
setHeadless(boolean) - Method in class org.scijava.ui.DefaultUIService
 
setHeadless(boolean) - Method in interface org.scijava.ui.UIService
Sets whether the application is running in headless mode (no UI).
setIconPath(String) - Method in class org.scijava.AbstractUIDetails
 
setIconPath(String) - Method in class org.scijava.command.DynamicCommandInfo
 
setIconPath(String) - Method in class org.scijava.MenuEntry
 
setIconPath(String) - Method in interface org.scijava.UIDetails
Sets the resource path to an icon representing the object.
setIconPixel(int, int, ColorRGB) - Method in interface org.scijava.tool.IconDrawer
 
setIncremental(boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
setInfo(PluginInfo<?>) - Method in class org.scijava.plugin.AbstractRichPlugin
 
setInfo(PluginInfo<?>) - Method in interface org.scijava.plugin.HasPluginInfo
Sets the PluginInfo metadata associated with the object.
setInitialized(boolean) - Method in class org.scijava.widget.DefaultWidgetModel
 
setInitialized(boolean) - Method in interface org.scijava.widget.WidgetModel
Toggles the widget's initialization state.
setInitializer(String) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setInitializer(String) - Method in interface org.scijava.module.MutableModuleItem
 
setInput(String, Object) - Method in class org.scijava.command.CommandModule
 
setInput(String, Object) - Method in class org.scijava.command.DynamicCommand
 
setInput(String, Object) - Method in class org.scijava.module.AbstractModule
 
setInput(String, Object) - Method in interface org.scijava.module.Module
Sets the value of the input with the given name.
setInputFile(File) - Method in class org.scijava.plugins.commands.io.OpenFile
 
setInputMap(InputTriggerMap) - Method in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
 
setInputs(Map<String, Object>) - Method in class org.scijava.module.AbstractModule
 
setInputs(Map<String, Object>) - Method in interface org.scijava.module.Module
Sets input values according to the given table.
setInputTrigger(InputTrigger) - Method in class org.scijava.ui.behaviour.io.gui.InputTriggerPanelEditor
 
setIOType(ItemIO) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setIOType(ItemIO) - Method in interface org.scijava.module.MutableModuleItem
 
setJniExtractor(JniExtractor) - Static method in class org.scijava.nativelib.NativeLoader
 
setJumpCutoff(long) - Method in class org.scijava.io.handle.AbstractSeekableStreamHandle
Sets the maximum of bytes which are read from the stream when seeking forward.
setKeypressManager(KeyPressedManager, Runnable) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
setKeypressManager(KeyPressedManager, Component) - Method in class org.scijava.ui.behaviour.MouseAndKeyHandler
 
setLabel(String) - Method in class org.scijava.AbstractBasicDetails
 
setLabel(String) - Method in interface org.scijava.BasicDetails
Sets the name to appear in a UI, if applicable.
setLabel(String) - Method in class org.scijava.command.DynamicCommandInfo
 
setLabel(String) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setLabel(String) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
setLabel(String) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer.SwingDisplayPanel
 
setLabel(String) - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel
 
setLabel(String) - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
setLabel(String) - Method in interface org.scijava.ui.viewer.DisplayPanel
Sets the label at the top of the display panel.
setLanguage(ScriptLanguage) - Method in class org.scijava.script.ScriptInfo
Overrides the script language to use when executing the script.
setLanguage(ScriptLanguage) - Method in class org.scijava.script.ScriptModule
Deprecated.
setLanguage(ScriptLanguage) - Method in class org.scijava.ui.swing.script.EditorPane
Set the language of this EditorPane.
setLanguage(ScriptLanguage, boolean) - Method in class org.scijava.ui.swing.script.EditorPane
Set the language of this EditorPane, optionally adding a header.
setLanguageByFileName(String) - Method in class org.scijava.ui.swing.script.EditorPane
Get the language by filename extension.
setLength(long) - Method in class org.scijava.download.MultiWriteHandle
 
setLength(long) - Method in class org.scijava.io.handle.BytesHandle
 
setLength(long) - Method in interface org.scijava.io.handle.DataHandle
Sets the new length of the handle.
setLength(long) - Method in class org.scijava.io.handle.DummyHandle
 
setLength(long) - Method in class org.scijava.io.handle.FileHandle
 
setLength(long) - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
setLength(long) - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
setLength(long) - Method in class org.scijava.io.http.HTTPHandle
 
setLevel(int) - Method in class org.scijava.log.AbstractLogService
 
setLevel(String, int) - Method in class org.scijava.log.AbstractLogService
 
setLevel(int) - Method in interface org.scijava.log.LogService
Changes the log level of the root logger.
setLevel(String, int) - Method in interface org.scijava.log.LogService
For messages that are logged directly to the LogService.
setLevelForLogger(String, int) - Method in class org.scijava.log.AbstractLogService
 
setLevelForLogger(String, int) - Method in interface org.scijava.log.LogService
Setting the log level for loggers depending on their LogSource.
setLittleEndian(boolean) - Method in interface org.scijava.io.handle.DataHandle
Sets the endianness of the stream.
setLocation(int, int) - Method in interface org.scijava.ui.ApplicationFrame
Sets the coordinates of the application frame's top left corner.
setLogger(Logger) - Method in class org.scijava.log.slf4j.SLF4JLogService
 
setLogLevel(int) - Method in class org.scijava.log.LogSource
 
setLogService(LogService) - Method in class org.scijava.script.AbstractScriptEngine
 
setLookAndFeel(String) - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
 
setMaximum(Comparable) - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
setMaximumGrowth(int) - Method in class org.scijava.util.AbstractPrimitiveArray
 
setMaximumGrowth(int) - Method in interface org.scijava.util.PrimitiveArray
Sets the maximal step size by which to grow the fixed-size array when running out of space.
setMaximumValue(T) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setMaximumValue(T) - Method in interface org.scijava.module.MutableModuleItem
 
setMenuPath(MenuPath) - Method in class org.scijava.AbstractUIDetails
 
setMenuPath(MenuPath) - Method in class org.scijava.command.DynamicCommandInfo
 
setMenuPath(MenuPath) - Method in interface org.scijava.UIDetails
Sets the path to the object's suggested position in the menu structure.
setMenuRoot(String) - Method in class org.scijava.AbstractUIDetails
 
setMenuRoot(String) - Method in class org.scijava.command.DynamicCommandInfo
 
setMenuRoot(String) - Method in interface org.scijava.UIDetails
Sets the name of the menu structure to which the object belongs.
setMinimum(Comparable) - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
setMinimumValue(T) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setMinimumValue(T) - Method in interface org.scijava.module.MutableModuleItem
 
setMnemonic(char) - Method in class org.scijava.MenuEntry
 
setModal(boolean) - Method in class org.scijava.ui.swing.SwingDialog
Specifies whether this dialog should be modal.
setMode(String) - Method in class org.scijava.io.handle.FileHandle
 
setModuleClass(Class<? extends Module>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
setModuleClass(Class<? extends Module>) - Method in interface org.scijava.module.MutableModuleInfo
Sets the module class described by this ModuleInfo.
setMouseoverEnabled(boolean) - Method in class org.scijava.ui.swing.search.SwingSearchBar
Sets whether the selection should change upon mouseover.
setName(String) - Method in class org.scijava.AbstractBasicDetails
 
setName(String) - Method in class org.scijava.command.DynamicCommandInfo
 
setName(String) - Method in class org.scijava.display.AbstractDisplay
 
setName(String) - Method in class org.scijava.menu.ShadowMenu
 
setName(String) - Method in class org.scijava.MenuEntry
 
setName(String) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setName(String) - Method in interface org.scijava.Named
Sets the name of the object.
setName(String) - Method in class org.scijava.task.DefaultTask
 
setNoteLength(int) - Method in class org.scijava.util.TunePlayer
 
setOctave(int) - Method in class org.scijava.util.TunePlayer
 
setOffset(long) - Method in class org.scijava.io.handle.AbstractStreamHandle
 
setOffset(long) - Method in interface org.scijava.io.handle.StreamHandle
Sets the offset of the handle to the given position.
setOrder(DataHandle.ByteOrder) - Method in class org.scijava.io.handle.AbstractDataHandle
 
setOrder(DataHandle.ByteOrder) - Method in interface org.scijava.io.handle.DataHandle
Sets the byte order of the stream.
setOrientation(int) - Method in class org.scijava.ui.swing.script.TextEditorTab
 
setOutput(String, Object) - Method in class org.scijava.command.CommandModule
 
setOutput(String, Object) - Method in class org.scijava.command.DynamicCommand
 
setOutput(String, Object) - Method in class org.scijava.module.AbstractModule
 
setOutput(String, Object) - Method in interface org.scijava.module.Module
Sets the value of the output with the given name.
setOutputs(Map<String, Object>) - Method in class org.scijava.module.AbstractModule
 
setOutputs(Map<String, Object>) - Method in interface org.scijava.module.Module
Sets output values according to the given table.
setOutputWriter(Writer) - Method in class org.scijava.script.ScriptModule
Sets the writer used to record the standard output stream.
setPanel(DisplayPanel) - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
setPanel(DisplayPanel) - Method in interface org.scijava.ui.viewer.DisplayViewer
Installs the display panel.
setParent(BehaviourMap) - Method in class org.scijava.ui.behaviour.BehaviourMap
Sets this BehaviourMap's parent.
setParent(InputTriggerMap) - Method in class org.scijava.ui.behaviour.InputTriggerMap
Sets this InputTriggerMap's parent.
setParent(ActionMap) - Method in class org.scijava.ui.behaviour.util.WrappedActionMap
 
setParent(BehaviourMap) - Method in class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
setParent(InputMap) - Method in class org.scijava.ui.behaviour.util.WrappedInputMap
 
setParent(InputTriggerMap) - Method in class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
setParent(Component) - Method in class org.scijava.ui.swing.SwingDialog
Sets the frame in which the dialog is displayed; if the parentComponent has no Frame, a default one is used.
setParent(TreeNode<?>) - Method in class org.scijava.util.DefaultTreeNode
 
setParent(TreeNode<?>) - Method in interface org.scijava.util.TreeNode
 
setParentActionMap(ActionMap) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Set existing parent ActionMap, which is managed outside of this InputActionBindings and serves as a parent for the whole chain.
setParentInputMap(InputMap) - Method in class org.scijava.ui.behaviour.util.InputActionBindings
Set existing parent InputMap, which is managed outside of this InputActionBindings and serves as a parent for the whole chain.
setPersisted(boolean) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setPersisted(boolean) - Method in interface org.scijava.module.MutableModuleItem
 
setPersistKey(String) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setPersistKey(String) - Method in interface org.scijava.module.MutableModuleItem
 
setPluginClass(Class<? extends Command>) - Method in class org.scijava.command.CommandInfo
 
setPluginClass(Class<? extends PT>) - Method in class org.scijava.plugin.PluginInfo
Explicitly sets the Class of the item objects.
setPluginType(Class<PT>) - Method in class org.scijava.plugin.PluginInfo
Sets the type of plugin described by the metadata.
setPresets(Map<String, Object>) - Method in class org.scijava.command.CommandInfo
Sets the table of items with fixed, preset values.
setPrintStreams(Function<Integer, PrintStream>) - Method in class org.scijava.log.StderrLogService
 
setPriority(double) - Method in class org.scijava.AbstractUIDetails
 
setPriority(double) - Method in class org.scijava.command.DynamicCommandInfo
 
setPriority(double) - Method in class org.scijava.plugin.AbstractRichPlugin
 
setPriority(double) - Method in interface org.scijava.Prioritized
Sets the sort priority of the object.
setProgress(int, int) - Method in class org.scijava.ui.awt.AWTStatusBar
 
setProgress(int, int) - Method in interface org.scijava.ui.StatusBar
 
setProgress(int, int) - Method in class org.scijava.ui.swing.SwingStatusBar
 
setProgressMaximum(long) - Method in class org.scijava.task.DefaultTask
 
setProgressMaximum(long) - Method in interface org.scijava.task.Task
Sets the total number of steps.
setProgressValue(long) - Method in class org.scijava.task.DefaultTask
 
setProgressValue(long) - Method in interface org.scijava.task.Task
Sets the current step.
setReader(Reader) - Method in class org.scijava.script.AbstractScriptContext
 
setRecordCallingClass(boolean) - Method in class org.scijava.ui.swing.console.LogRecorder
 
setRecorder(LogRecorder) - Method in class org.scijava.ui.swing.console.LoggingPanel
 
setRed(int, int, int) - Method in class org.scijava.ui.ARGBPlane
 
setRequired(boolean) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setRequired(boolean) - Method in interface org.scijava.module.MutableModuleItem
 
setResizable(boolean) - Method in class org.scijava.ui.swing.SwingDialog
Sets whether this dialog is resizable by the user.
setResolved(String, boolean) - Method in interface org.scijava.module.Module
setResultLimit(int) - Method in class org.scijava.ui.swing.search.SwingSearchBar
Sets the maximum number of results per search category.
setReturnValueAppended(boolean) - Method in class org.scijava.script.ScriptInfo
Gets whether the return value is appended as an additional output.
setRowCount(int) - Method in class org.scijava.table.AbstractTable
 
setRowCount(int) - Method in interface org.scijava.table.Table
Sets the number of rows in the table.
setRowHeader(int, String) - Method in class org.scijava.table.AbstractTable
 
setRowHeader(int, String) - Method in interface org.scijava.table.Table
Sets the row header at the given row.
setSearchPattern(String) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
Sets the content of the search field.
setSeed(long) - Method in class org.scijava.util.MersenneTwisterFast
Initalize the pseudo random number generator.
setSeed(int[]) - Method in class org.scijava.util.MersenneTwisterFast
Sets the seed of the MersenneTwister using an array of integers.
setSelectable(boolean) - Method in class org.scijava.AbstractUIDetails
 
setSelectable(boolean) - Method in class org.scijava.command.DynamicCommandInfo
 
setSelectable(boolean) - Method in interface org.scijava.UIDetails
Sets whether the object can be selected (e.g., checking and unchecking its menu item) in the user interface.
setSelected(boolean) - Method in class org.scijava.AbstractUIDetails
 
setSelected(boolean) - Method in class org.scijava.command.DynamicCommandInfo
 
setSelected(boolean) - Method in interface org.scijava.UIDetails
Sets whether the object is selected (e.g., its menu item is checked) in the user interface.
setSelectionGroup(String) - Method in class org.scijava.AbstractUIDetails
 
setSelectionGroup(String) - Method in class org.scijava.command.DynamicCommandInfo
 
setSelectionGroup(String) - Method in interface org.scijava.UIDetails
Sets the name of the selection group to which the object belongs.
setSize(int) - Method in interface org.scijava.table.Column
Sets the column's size (i.e., number of rows).
setSize(int) - Method in class org.scijava.util.AbstractPrimitiveArray
 
setSize(int) - Method in interface org.scijava.util.Sizable
 
setSize(int) - Method in class org.scijava.util.SizableArrayList
 
setSizeLimited(boolean) - Method in class org.scijava.ui.swing.SwingDialog
Sets whether this dialog's size is limited by the screen size.
setSnapshotVersion(String) - Method in class org.scijava.minimaven.Coordinate
 
setSoftMaximum(T) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setSoftMaximum(T) - Method in interface org.scijava.module.MutableModuleItem
 
setSoftMinimum(T) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setSoftMinimum(T) - Method in interface org.scijava.module.MutableModuleItem
 
setSourceObject(Object) - Method in class org.scijava.convert.ConversionRequest
Sets the source object for this ConversionRequest.
setSourcesPanelVisible(boolean) - Method in class org.scijava.ui.swing.console.LoggingPanel
 
setStatus(String) - Method in class org.scijava.ui.awt.AWTStatusBar
 
setStatus(String) - Method in interface org.scijava.ui.StatusBar
 
setStatus(String) - Method in class org.scijava.ui.swing.SwingStatusBar
 
setStatusMessage(String) - Method in class org.scijava.task.DefaultTask
 
setStatusMessage(String) - Method in interface org.scijava.task.Task
Sets the status message.
setStepSize(Number) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setStepSize(Number) - Method in interface org.scijava.module.MutableModuleItem
 
setStepSize(Number) - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
setStrict(boolean) - Method in class org.scijava.Context
 
setStrict(boolean) - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
setStrict(boolean) - Method in interface org.scijava.parsington.eval.Evaluator
Sets whether the evaluator is operating in strict mode.
setSuccessful(boolean) - Method in class org.scijava.ui.dnd.event.DropEvent
Sets whether the drop operation was successful.
setTabSize(int) - Method in class org.scijava.ui.swing.script.EditorPane
 
setTags(Collection<String>) - Method in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
setTempo(int) - Method in class org.scijava.util.TunePlayer
 
setText(String) - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
setText(String) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Resets the text pane to the given HTML text.
setTextFilterVisible(boolean) - Method in class org.scijava.ui.swing.console.LoggingPanel
 
setTimeout(long) - Method in class org.scijava.io.location.AbstractRemoteLocation
 
setTimeout(long) - Method in interface org.scijava.io.location.RemoteLocation
Sets the connection timeout for this location.
setTitle(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
setTitle(String) - Method in class org.scijava.ui.swing.SwingDialog
Sets the title string to display in the dialog title bar.
setTitle(String) - Method in interface org.scijava.ui.viewer.DisplayWindow
 
setToolTip(JComponent) - Method in class org.scijava.ui.swing.widget.SwingInputWidget
Assigns the model's description as the given component's tool tip.
setTriggers(String[]) - Method in class org.scijava.ui.behaviour.io.InputTriggerDescription
 
setUI(UserInterface) - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
Deprecated.
setup() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
setup() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
setupAppFrame() - Method in class org.scijava.ui.swing.AbstractSwingUI
Configures the application frame for subclass-specific settings (e.g., SDI or MDI).
setupAppFrame() - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
setupAppFrame() - Method in class org.scijava.ui.swing.sdi.SwingSDIUI
 
setupConsole() - Method in class org.scijava.ui.swing.AbstractSwingUI
Configures the console for subclass-specific settings (e.g., SDI or MDI).
setupConsole() - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
setupConsole() - Method in class org.scijava.ui.swing.sdi.SwingSDIUI
 
setValidater(String) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setValidater(String) - Method in interface org.scijava.module.MutableModuleItem
 
setValue(Module, T) - Method in class org.scijava.module.AbstractModuleItem
 
setValue(Module, T) - Method in interface org.scijava.module.ModuleItem
Sets the item's current value with respect to the given module.
setValue(String, Object) - Method in class org.scijava.optional.AbstractOptions
 
setValue(String, Object) - Method in interface org.scijava.optional.Options
 
setValue(int, int, boolean) - Method in interface org.scijava.table.BoolTable
Sets the value of the given table cell.
setValue(int, int, byte) - Method in interface org.scijava.table.ByteTable
Sets the value of the given table cell.
setValue(int, int, char) - Method in interface org.scijava.table.CharTable
Sets the value of the given table cell.
setValue(int, int, double) - Method in interface org.scijava.table.DoubleTable
Sets the value of the given table cell.
setValue(int, int, float) - Method in interface org.scijava.table.FloatTable
Sets the value of the given table cell.
setValue(int, int, int) - Method in interface org.scijava.table.IntTable
Sets the value of the given table cell.
setValue(int, int, long) - Method in interface org.scijava.table.LongTable
Sets the value of the given table cell.
setValue(int, int, short) - Method in interface org.scijava.table.ShortTable
Sets the value of the given table cell.
setValue(Object) - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
setValue(int, boolean) - Method in class org.scijava.util.BoolArray
 
setValue(int, byte) - Method in class org.scijava.util.ByteArray
 
setValue(int, char) - Method in class org.scijava.util.CharArray
 
setValue(Field, Object, Object) - Static method in class org.scijava.util.ClassUtils
Sets the given field's value of the specified object instance.
setValue(int, double) - Method in class org.scijava.util.DoubleArray
 
setValue(int, float) - Method in class org.scijava.util.FloatArray
 
setValue(int, int) - Method in class org.scijava.util.IntArray
 
setValue(int, long) - Method in class org.scijava.util.LongArray
 
setValue(int, E) - Method in class org.scijava.util.ObjectArray
 
setValue(int, short) - Method in class org.scijava.util.ShortArray
 
setValue(Object) - Method in class org.scijava.widget.DefaultWidgetModel
 
setValue(Object) - Method in interface org.scijava.widget.WidgetModel
Sets the current value of the module input.
setValueAt(Object, int, int) - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.TableModel
 
setVar(String, Object) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable in the universe.
setVar(String, boolean) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable of primitive type boolean in the universe.
setVar(String, byte) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable of primitive type byte in the universe.
setVar(String, char) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable of primitive type char in the universe.
setVar(String, double) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable of primitive type double in the universe.
setVar(String, float) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable of primitive type float in the universe.
setVar(String, int) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable of primitive type int in the universe.
setVar(String, long) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable of primitive type long in the universe.
setVar(String, short) - Method in class org.scijava.util.ReflectedUniverse
Registers a variable of primitive type short in the universe.
setVerbose(boolean) - Method in class org.scijava.minimaven.BuildEnvironment
 
setVisibility(ItemVisibility) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setVisibility(ItemVisibility) - Method in interface org.scijava.module.MutableModuleItem
 
setVisible(boolean) - Method in class org.scijava.AbstractUIDetails
 
setVisible(boolean) - Method in interface org.scijava.ui.ApplicationFrame
Show or hide the application frame
setVisible(LogFormatter.Field, boolean) - Method in class org.scijava.ui.swing.console.LogFormatter
 
setVisible(boolean) - Method in class org.scijava.ui.swing.mdi.ModalInternalFrame
 
setVisible(boolean) - Method in interface org.scijava.UIDetails
Sets whether the object should be visible in the user interface.
setWeight(double) - Method in class org.scijava.MenuEntry
 
setWidgetStyle(String) - Method in class org.scijava.module.DefaultMutableModuleItem
 
setWidgetStyle(String) - Method in interface org.scijava.module.MutableModuleItem
 
setWindow(Component) - Method in class org.scijava.ui.swing.console.SwingConsolePane
Sets the window which should be shown when SwingConsolePane.show() is called.
setWriter(Writer) - Method in class org.scijava.script.AbstractScriptContext
 
sha1(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the given byte array's SHA-1 checksum, or null if unavailable.
ShadowMenu - Class in org.scijava.menu
A tree representing a menu structure independent of any particular user interface.
ShadowMenu(Context, Collection<? extends ModuleInfo>) - Constructor for class org.scijava.menu.ShadowMenu
Constructs a root menu node populated with the given modules.
ShadowMenuIterator - Class in org.scijava.menu
Recursive iterator for ShadowMenu hierarchies.
ShadowMenuIterator(ShadowMenu) - Constructor for class org.scijava.menu.ShadowMenuIterator
 
ShebangScriptProcessor - Class in org.scijava.script.process
A ScriptProcessor which looks for a #! at the beginning of a script, and set the language accordingly.
ShebangScriptProcessor() - Constructor for class org.scijava.script.process.ShebangScriptProcessor
 
SHIFT_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
shiftPressed() - Method in class org.scijava.ui.behaviour.GlobalKeyEventDispatcher
 
ShortArray - Class in org.scijava.util
An extensible array of short elements.
ShortArray() - Constructor for class org.scijava.util.ShortArray
Constructs an extensible array of shorts, backed by a fixed-size array.
ShortArray(int) - Constructor for class org.scijava.util.ShortArray
Constructs an extensible array of shorts, backed by a fixed-size array.
ShortArray(short[]) - Constructor for class org.scijava.util.ShortArray
Constructs an extensible array of shorts, backed by the given fixed-size array.
ShortArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper
 
ShortArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.ShortArrayWrapper
 
ShortColumn - Class in org.scijava.table
Efficient implementation of Column for short primitives.
ShortColumn() - Constructor for class org.scijava.table.ShortColumn
 
ShortColumn(String) - Constructor for class org.scijava.table.ShortColumn
 
SHORTENER_BACKSLASH - Static variable in class org.scijava.util.FileUtils
 
SHORTENER_BACKSLASH_REGEX - Static variable in class org.scijava.util.FileUtils
 
SHORTENER_ELLIPSE - Static variable in class org.scijava.util.FileUtils
 
SHORTENER_SLASH - Static variable in class org.scijava.util.FileUtils
 
SHORTENER_SLASH_REGEX - Static variable in class org.scijava.util.FileUtils
 
shortenPath(String) - Static method in class org.scijava.util.FileUtils
Shortens the path to a maximum of 4 path elements.
shortenPath(String, int) - Static method in class org.scijava.util.FileUtils
Shortens the path based on the given maximum number of path elements.
ShortTable - Interface in org.scijava.table
A table of short-precision integer values.
ShortToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToBigDecimalConverter
 
ShortToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToBigIntegerConverter
 
ShortToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToDoubleConverter
 
ShortToFloatConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToFloatConverter
 
ShortToIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToIntegerConverter
 
ShortToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.ShortToLongConverter
 
show() - Method in class org.scijava.ui.AbstractUserInterface
 
show(String, Object) - Method in class org.scijava.ui.AbstractUserInterface
 
show(Display<?>) - Method in class org.scijava.ui.AbstractUserInterface
 
show() - Method in interface org.scijava.ui.console.ConsolePane
Makes the console visible.
show(Object) - Method in class org.scijava.ui.DefaultUIService
 
show(String, Object) - Method in class org.scijava.ui.DefaultUIService
 
show(Display<?>) - Method in class org.scijava.ui.DefaultUIService
 
show() - Method in class org.scijava.ui.headless.HeadlessUI
 
show(String, Object) - Method in class org.scijava.ui.headless.HeadlessUI
 
show(Display<?>) - Method in class org.scijava.ui.headless.HeadlessUI
 
show() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
show(boolean) - Method in class org.scijava.ui.swing.script.FindAndReplaceDialog
 
show() - Method in class org.scijava.ui.swing.SwingDialog
Shows the dialog.
show(Object) - Method in interface org.scijava.ui.UIService
Creates a Display for the given object, and shows it using an appropriate UI widget of the default user interface.
show(String, Object) - Method in interface org.scijava.ui.UIService
Creates a Display for the given object, and shows it using an appropriate UI widget of the default user interface.
show(Display<?>) - Method in interface org.scijava.ui.UIService
Creates and shows the given Display using an appropriate UI widget of the default user interface.
show() - Method in interface org.scijava.ui.UserInterface
Shows the UI.
show(Object) - Method in interface org.scijava.ui.UserInterface
Shows the object onscreen using an appropriate UI widget.
show(String, Object) - Method in interface org.scijava.ui.UserInterface
Shows the object onscreen using an appropriate UI widget.
show(Display<?>) - Method in interface org.scijava.ui.UserInterface
Shows the display onscreen using an appropriate UI widget.
showColorDialog(Component, String, Color) - Static method in class org.scijava.ui.swing.widget.SwingColorWidget
This method is identical to JColorChooser.showDialog(Component, String, Color) except that it reorders the panels of the color chooser to be more desirable.
showConsole() - Method in class org.scijava.parsington.eval.EvaluatorConsole
 
showConsole(BufferedReader) - Method in class org.scijava.parsington.eval.EvaluatorConsole
 
ShowConsole - Class in org.scijava.ui.swing.console
Pops up the console window.
ShowConsole() - Constructor for class org.scijava.ui.swing.console.ShowConsole
 
showContextMenu(String, Display<?>, int, int) - Method in class org.scijava.ui.awt.AWTUI
 
showContextMenu(String, Display<?>, int, int) - Method in class org.scijava.ui.DefaultUIService
 
showContextMenu(String, Display<?>, int, int) - Method in class org.scijava.ui.headless.HeadlessUI
 
showContextMenu(String, Display<?>, int, int) - Method in class org.scijava.ui.swing.AbstractSwingUI
 
showContextMenu(String, Display<?>, int, int) - Method in interface org.scijava.ui.UIService
Displays a popup context menu for the given display at the specified position.
showContextMenu(String, Display<?>, int, int) - Method in interface org.scijava.ui.UserInterface
Displays a popup context menu for the given display at the specified position.
showDependencyTree(PrintStream, MavenProject, String) - Static method in class org.scijava.minimaven.MiniMaven
 
showDialog(String) - Method in class org.scijava.ui.DefaultUIService
 
showDialog(String, DialogPrompt.MessageType) - Method in class org.scijava.ui.DefaultUIService
 
showDialog(String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.DefaultUIService
 
showDialog(String, String) - Method in class org.scijava.ui.DefaultUIService
 
showDialog(String, String, DialogPrompt.MessageType) - Method in class org.scijava.ui.DefaultUIService
 
showDialog(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.DefaultUIService
 
showDialog(String) - Method in interface org.scijava.ui.UIService
Displays a dialog prompt.
showDialog(String, DialogPrompt.MessageType) - Method in interface org.scijava.ui.UIService
Displays a dialog prompt.
showDialog(String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in interface org.scijava.ui.UIService
Displays a dialog prompt.
showDialog(String, String) - Method in interface org.scijava.ui.UIService
Displays a dialog prompt.
showDialog(String, String, DialogPrompt.MessageType) - Method in interface org.scijava.ui.UIService
Displays a dialog prompt.
showDialog(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in interface org.scijava.ui.UIService
Displays a dialog prompt.
showDisplay(boolean) - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
showDisplay(boolean) - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
showDisplay(boolean) - Method in interface org.scijava.ui.viewer.DisplayWindow
Places this component into the desktop environment.
showErrors() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
showExtension(String) - Method in class org.scijava.ui.swing.script.FileSystemTree
showingErrors - Variable in class org.scijava.ui.swing.script.TextEditorTab
 
showOutput() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
showPanel(Container) - Method in class org.scijava.ui.swing.search.SwingSearchBar
Called on the EDT when the search panel wants to appear.
showProgress(int, int) - Method in class org.scijava.app.DefaultStatusService
 
showProgress(int, int) - Method in interface org.scijava.app.StatusService
Updates the progress bar.
showStatus(String) - Method in class org.scijava.app.DefaultStatusService
 
showStatus(int, int, String) - Method in class org.scijava.app.DefaultStatusService
 
showStatus(int, int, String, boolean) - Method in class org.scijava.app.DefaultStatusService
 
showStatus(String) - Method in interface org.scijava.app.StatusService
Updates the status message.
showStatus(int, int, String) - Method in interface org.scijava.app.StatusService
Updates the status message and progress bar.
showStatus(int, int, String, boolean) - Method in interface org.scijava.app.StatusService
Updates the status message and progress bar, optionally flagging the status notification as a warning.
ShowSubscribers - Class in org.scijava.plugins.commands.debug
For EventBus diagnostics: shows what is subscribed to various event types.
ShowSubscribers() - Constructor for class org.scijava.plugins.commands.debug.ShowSubscribers
 
showTree(PrintStream, MavenProject, String) - Static method in class org.scijava.minimaven.MiniMaven
 
showUI() - Method in class org.scijava.ui.DefaultUIService
 
showUI(String) - Method in class org.scijava.ui.DefaultUIService
 
showUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService
 
showUI() - Method in interface org.scijava.ui.UIService
Displays the UI for the default user interface.
showUI(String) - Method in interface org.scijava.ui.UIService
Displays the UI with the given name (or class name).
showUI(UserInterface) - Method in interface org.scijava.ui.UIService
Displays the given UI.
ShowUIArgument - Class in org.scijava.ui.console
Handles the --showUI argument, which signals that the UI should be opened immediately.
ShowUIArgument() - Constructor for class org.scijava.ui.console.ShowUIArgument
 
shutdown() - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
Stop printing services, finishing to print any remaining tasks in the context of the calling thread.
shutdown() - Method in class org.scijava.ui.swing.script.JTextAreaWriter
Stop printing services, finishing to print any remaining tasks in the context of the calling thread.
shutdownNow() - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
Stop printing services immediately, not printing any remaining text.
shutdownNow() - Method in class org.scijava.ui.swing.script.JTextAreaWriter
Stop printing services immediately, not printing any remaining text.
sibling(String) - Method in interface org.scijava.io.location.BrowsableLocation
Obtains a location relative to this one, which will be configured like the current location, but point to a the file specified by the path parameter.
sibling(String) - Method in class org.scijava.io.location.FileLocation
 
SIENNA - Static variable in class org.scijava.util.Colors
 
SILVER - Static variable in class org.scijava.util.Colors
 
singleToImportStatement(String) - Method in interface org.scijava.ui.swing.script.autocompletion.ImportFormat
Given a fully-qualified class name, return a String with the class formatted as an import statement.
singleToImportStatement(String) - Method in class org.scijava.ui.swing.script.autocompletion.JythonImportFormat
 
SingletonPlugin - Interface in org.scijava.plugin
Interface for plugins intended to be instantiated as singletons.
SingletonService<PT extends SingletonPlugin> - Interface in org.scijava.plugin
A service for managing SingletonPlugins of a particular type.
Sizable - Interface in org.scijava.util
An entity with a size.
SizableArrayList<E> - Class in org.scijava.util
An ArrayList whose size can be adjusted more efficiently.
SizableArrayList(int) - Constructor for class org.scijava.util.SizableArrayList
 
SizableArrayList() - Constructor for class org.scijava.util.SizableArrayList
 
SizableArrayList(Collection<? extends E>) - Constructor for class org.scijava.util.SizableArrayList
 
size() - Method in class org.scijava.display.AbstractDisplay
 
size() - Method in class org.scijava.io.ByteArrayByteBank
 
size() - Method in interface org.scijava.io.ByteBank
 
size() - Method in class org.scijava.io.nio.ByteBufferByteBank
 
size() - Method in class org.scijava.menu.ShadowMenu
 
size() - Method in class org.scijava.object.ObjectIndex
 
size() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
size() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
size() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
size() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
size() - Method in interface org.scijava.table.Column
Gets the column's size (i.e., number of rows).
size() - Method in interface org.scijava.table.Table
Gets the number of columns in the table.
size() - Method in class org.scijava.ui.behaviour.util.WrappedActionMap
 
size() - Method in class org.scijava.ui.behaviour.util.WrappedInputMap
 
size() - Method in class org.scijava.util.AbstractPrimitiveArray
 
size() - Method in class org.scijava.util.LastRecentlyUsed
 
size() - Method in interface org.scijava.util.Sizable
 
skip(long) - Method in interface org.scijava.io.handle.DataHandle
Skips over and discards n bytes of data from the stream.
skip(long) - Method in class org.scijava.io.handle.DataHandleInputStream
 
skip(long) - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
skipBytes(int) - Method in interface org.scijava.io.handle.DataHandle
 
skipBytes(int) - Method in class org.scijava.io.handle.FileHandle
 
SKYBLUE - Static variable in class org.scijava.util.Colors
 
SLATEBLUE - Static variable in class org.scijava.util.Colors
 
SLATEGRAY - Static variable in class org.scijava.util.Colors
 
SLATEGREY - Static variable in class org.scijava.util.Colors
 
SLF4JLogService - Class in org.scijava.log.slf4j
Logging service implemented using SLF4J.
SLF4JLogService() - Constructor for class org.scijava.log.slf4j.SLF4JLogService
 
SLIDER_STYLE - Static variable in interface org.scijava.widget.NumberWidget
Widget style for slider with spinner.
SnapshotPOMHandler - Class in org.scijava.minimaven
TODO
SnapshotPOMHandler() - Constructor for class org.scijava.minimaven.SnapshotPOMHandler
 
snapshotVersion - Variable in class org.scijava.minimaven.Coordinate
 
snapshotVersion - Variable in class org.scijava.minimaven.SnapshotPOMHandler
 
snippet() - Method in class org.scijava.search.snippet.SnippetSearchResult
 
SnippetSearcher - Class in org.scijava.search.snippet
Searcher plugin for code snippets.
SnippetSearcher() - Constructor for class org.scijava.search.snippet.SnippetSearcher
 
SnippetSearchResult - Class in org.scijava.search.snippet
Search result for the ModuleSearcher.
SnippetSearchResult(ScriptLanguage, String) - Constructor for class org.scijava.search.snippet.SnippetSearchResult
 
SNOW - Static variable in class org.scijava.util.Colors
 
sort(List<PT>, Class<PT>) - Method in interface org.scijava.plugin.PluginService
Sorts the given list of plugin instances by priority.
SortablePlugin - Class in org.scijava.plugin
Deprecated.
Use AbstractRichPlugin instead.
SortablePlugin() - Constructor for class org.scijava.plugin.SortablePlugin
Deprecated.
 
SortedObjectIndex<E extends Comparable<? super E>> - Class in org.scijava.object
Data structure for managing sorted lists of registered objects.
SortedObjectIndex(Class<E>) - Constructor for class org.scijava.object.SortedObjectIndex
 
sortImports() - Method in class org.scijava.ui.swing.script.TokenFunctions
 
source() - Method in interface org.scijava.download.Download
 
source() - Method in class org.scijava.log.LogMessage
Represents the source of the message.
sourceClass() - Method in class org.scijava.convert.ConversionRequest
 
sourceDirectory - Variable in class org.scijava.minimaven.MavenProject
 
SourceFinder - Class in org.scijava.search
Static utility class for finding source URL of a given class.
SourceFinder() - Constructor for class org.scijava.search.SourceFinder
 
sourceLocation(Class<?>, Logger) - Static method in class org.scijava.search.SourceFinder
Discerns a URL where the source for a given class can be browsed.
SourceNotFoundException - Exception in org.scijava.search
Exception for when source location discovery fails.
SourceNotFoundException(Class<?>, Throwable) - Constructor for exception org.scijava.search.SourceNotFoundException
 
sourceObject() - Method in class org.scijava.convert.ConversionRequest
 
SourceSearchActionFactory - Class in org.scijava.search.classes
Search action for viewing the source code of a Java class.
SourceSearchActionFactory() - Constructor for class org.scijava.search.classes.SourceSearchActionFactory
 
sourceType() - Method in class org.scijava.batch.input.BatchInput
 
sourceType() - Method in class org.scijava.convert.ConversionRequest
 
sourceVersion - Variable in class org.scijava.minimaven.MavenProject
 
SPINNER_STYLE - Static variable in interface org.scijava.widget.NumberWidget
Widget style for spinner only.
SpinnerBigDecimalModel - Class in org.scijava.ui.swing.widget
SpinnerBigDecimalModel(BigDecimal, Comparable<BigDecimal>, Comparable<BigDecimal>, BigDecimal) - Constructor for class org.scijava.ui.swing.widget.SpinnerBigDecimalModel
 
SpinnerBigIntegerModel - Class in org.scijava.ui.swing.widget
SpinnerBigIntegerModel(BigInteger, Comparable<BigInteger>, Comparable<BigInteger>, BigInteger) - Constructor for class org.scijava.ui.swing.widget.SpinnerBigIntegerModel
 
SpinnerNumberModelFactory - Class in org.scijava.ui.swing.widget
Factory for producing the correct SpinnerNumberModel subclass based on the type of Number.
SpinnerNumberModelFactory() - Constructor for class org.scijava.ui.swing.widget.SpinnerNumberModelFactory
 
SpinnerTypedNumberModel<T extends Number> - Class in org.scijava.ui.swing.widget
Abstract superclass for SpinnerNumberModel implementations for non-primitive Number types, such as BigInteger and BigDecimal.
SpinnerTypedNumberModel(Class<T>, T, Comparable<T>, Comparable<T>, T) - Constructor for class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
splitUnquoted(String, String) - Static method in class org.scijava.util.StringUtils
Splits a string only at separators outside of quotation marks (").
SPRINGGREEN - Static variable in class org.scijava.util.Colors
 
StackEvaluator - Interface in org.scijava.parsington.eval
Interface for stack-based expression evaluators.
StandardEvaluator - Interface in org.scijava.parsington.eval
Interface for expression evaluators which support the standard operators.
standardList() - Static method in class org.scijava.parsington.Operators
Gets the standard list of operators.
start(boolean) - Static method in class org.scijava.util.Timing
 
startElement(String, String, String, Attributes) - Method in class org.scijava.minimaven.AbstractPOMHandler
 
startsWithIdentifier(String) - Method in class org.scijava.ui.swing.script.MacroFunctions
 
startup() - Method in class org.scijava.AbstractGateway
 
startup() - Method in interface org.scijava.Gateway
Gets this application context's StartupService.
StartupService - Interface in org.scijava.startup
Interface for service managing startup operations.
stateChanged(ChangeEvent) - Method in class org.scijava.ui.swing.script.TextEditor
 
stateChanged(ChangeEvent) - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
stateChanged(ChangeEvent) - Method in class org.scijava.ui.swing.widget.SwingToggleWidget
 
stateEquals(Object) - Method in class org.scijava.util.MersenneTwisterFast
 
statementTerminate() - Method in interface org.scijava.script.CodeGenerator
Deprecated.
 
statementTerminate() - Method in class org.scijava.script.CodeGeneratorJava
Deprecated.
 
StaticSwingUtils - Class in org.scijava.ui.swing
A collection of generally useful Swing utility methods.
StaticSwingUtils.PopperUpper - Class in org.scijava.ui.swing
Different platforms use different mouse gestures as pop-up triggers.
status() - Method in class org.scijava.AbstractGateway
 
status() - Method in interface org.scijava.Gateway
Gets this application context's StatusService.
StatusBar - Interface in org.scijava.ui
Common interface for status bars, which have a text area and progress bar, similar to ImageJ 1.x.
StatusEvent - Class in org.scijava.app.event
An event indicating a status update.
StatusEvent(String) - Constructor for class org.scijava.app.event.StatusEvent
 
StatusEvent(String, boolean) - Constructor for class org.scijava.app.event.StatusEvent
 
StatusEvent(int, int) - Constructor for class org.scijava.app.event.StatusEvent
 
StatusEvent(int, int, String) - Constructor for class org.scijava.app.event.StatusEvent
 
StatusEvent(int, int, String, boolean) - Constructor for class org.scijava.app.event.StatusEvent
 
StatusService - Interface in org.scijava.app
Interface for the status notification service.
StdErrFilter - Class in org.scijava.config.logback
Filters log messages, keeping only Level.WARN and Level.ERROR levels.
StdErrFilter() - Constructor for class org.scijava.config.logback.StdErrFilter
 
StderrLogService - Class in org.scijava.log
Implementation of LogService using the standard error stream.
StderrLogService() - Constructor for class org.scijava.log.StderrLogService
 
StdOutFilter - Class in org.scijava.config.logback
Filters log messages, keeping only Level.TRACE, Level.DEBUG and Level.INFO levels.
StdOutFilter() - Constructor for class org.scijava.config.logback.StdOutFilter
 
STEELBLUE - Static variable in class org.scijava.util.Colors
 
stepDown() - Method in class org.scijava.ui.swing.widget.SpinnerBigDecimalModel
 
stepDown() - Method in class org.scijava.ui.swing.widget.SpinnerBigIntegerModel
 
stepDown() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
stepUp() - Method in class org.scijava.ui.swing.widget.SpinnerBigDecimalModel
 
stepUp() - Method in class org.scijava.ui.swing.widget.SpinnerBigIntegerModel
 
stepUp() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
stop(Timing) - Static method in class org.scijava.util.Timing
 
stream() - Method in class org.scijava.ui.swing.console.LogRecorder
 
StreamHandle<L extends Location> - Interface in org.scijava.io.handle
A DataHandle backed by an InputStream and/or OutputStream.
STRICT_PROPERTY - Static variable in class org.scijava.Context
System property indicating whether the context should fail fast when attempting to instantiate a required service which is invalid or missing.
STRING - Static variable in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
 
string(byte[]) - Static method in class org.scijava.util.DigestUtils
Converts the given byte array to a string.
string(List<?>) - Static method in class org.scijava.util.ListUtils
Converts the given list to a string.
string(List<?>, boolean) - Static method in class org.scijava.util.ListUtils
Converts the given list to a string.
string(List<?>, String, String, String, boolean) - Static method in class org.scijava.util.ListUtils
Converts the given list to a string.
StringMaker - Class in org.scijava.util
Helper class for building up Strings of key/value pairs.
StringMaker() - Constructor for class org.scijava.util.StringMaker
 
StringMaker(String) - Constructor for class org.scijava.util.StringMaker
 
StringToFileArrayConverter() - Constructor for class org.scijava.convert.FileListConverters.StringToFileArrayConverter
 
StringToFileConverter() - Constructor for class org.scijava.convert.FileListConverters.StringToFileConverter
 
StringUtils - Class in org.scijava.util
Useful methods for working with Strings.
stripFilenameVersion(String) - Static method in class org.scijava.util.FileUtils
 
stripNulls(String) - Static method in class org.scijava.util.StringUtils
Removes null bytes from a string.
stripSuffix(String, String) - Method in class org.scijava.ui.swing.script.FileFunctions
 
sub(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
sub(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
sub(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
sub(float, float) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
sub(double, double) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
sub(BigInteger, BigInteger) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
sub(BigDecimal, BigDecimal) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
sub(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.SUB operator.
SUB - Static variable in class org.scijava.parsington.Operators
 
SUB_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
subAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
subAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.SUB_ASSIGN operator.
subList(int, int) - Method in class org.scijava.display.AbstractDisplay
 
subList(int, int) - Method in interface org.scijava.table.Column
 
subList(int, int) - Method in interface org.scijava.table.Table
Returns a view of the portion of the table between the specified fromIndex, inclusive, and toIndex, exclusive.
subLogger(String, int) - Method in class org.scijava.log.AbstractLogService
 
subLogger(String, int) - Method in class org.scijava.log.DefaultLogger
 
subLogger(String) - Method in interface org.scijava.log.Logger
Creates a sub logger, that forwards the message it gets to this logger.
subLogger(String, int) - Method in interface org.scijava.log.Logger
Creates a sub logger, that forwards the message it gets to this logger.
subscribe(Object) - Method in class org.scijava.event.DefaultEventService
 
subscribe(Object) - Method in interface org.scijava.event.EventService
Subscribes all of the given object's @EventHandler annotated methods.
SubSequence - Class in org.scijava.parsington
A CharSequence which is a by-reference subsequence of another CharSequence.
SubSequence(CharSequence, int) - Constructor for class org.scijava.parsington.SubSequence
 
SubSequence(CharSequence, int, int) - Constructor for class org.scijava.parsington.SubSequence
 
subSequence(int, int) - Method in class org.scijava.parsington.SubSequence
 
subSource(String) - Method in class org.scijava.log.LogSource
Returns a log source with the given path.
supports(SearchResult) - Method in class org.scijava.batch.BatchModuleSearchActionFactory
 
supports(BatchInput) - Method in class org.scijava.batch.input.FileBatchInputProvider
 
supports(WidgetModel) - Method in class org.scijava.batch.SwingScriptInfoWidget
 
supports(LinkedList<String>) - Method in class org.scijava.command.console.RunArgument
Deprecated.
 
supports(Object) - Method in class org.scijava.command.run.CommandCodeRunner
 
supports(LinkedList<String>) - Method in class org.scijava.console.AbstractConsoleArgument
 
supports(LinkedList<String>) - Method in class org.scijava.console.SystemPropertyArgument
 
supports(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter
 
supports(Object, Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
supports(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
supports(Object, Type) - Method in class org.scijava.convert.AbstractConvertService
 
supports(Class<?>, Type) - Method in class org.scijava.convert.AbstractConvertService
 
supports(Object, Class<?>) - Method in interface org.scijava.convert.ConvertService
 
supports(Object, Type) - Method in interface org.scijava.convert.ConvertService
 
supports(Class<?>, Class<?>) - Method in interface org.scijava.convert.ConvertService
supports(Class<?>, Type) - Method in interface org.scijava.convert.ConvertService
supports(LinkedList<String>) - Method in class org.scijava.io.console.OpenArgument
 
supports(String) - Method in interface org.scijava.io.IOPlugin
 
supports(URI) - Method in class org.scijava.io.location.AbstractLocationResolver
 
supports(LinkedList<String>) - Method in class org.scijava.main.console.MainArgument
 
supports(Object) - Method in class org.scijava.main.run.MainCodeRunner
 
supports(Object) - Method in class org.scijava.module.run.ModuleCodeRunner
 
supports(D) - Method in class org.scijava.plugin.AbstractTypedPlugin
 
supports(DT) - Method in interface org.scijava.plugin.HandlerService
Gets whether the given data object is supported.
supports(DT) - Method in interface org.scijava.plugin.WrapperService
 
supports(LinkedList<String>) - Method in class org.scijava.run.console.RunArgument
 
supports(ScriptLanguage) - Method in class org.scijava.script.AbstractScriptHeader
 
supports(LinkedList<String>) - Method in class org.scijava.script.console.RunScriptArgument
Deprecated.
 
supports(Object) - Method in class org.scijava.script.run.ScriptCodeRunner
 
supports(SearchResult) - Method in class org.scijava.search.classes.JavadocSearchActionFactory
 
supports(SearchResult) - Method in class org.scijava.search.classes.SourceSearchActionFactory
 
supports(SearchResult) - Method in class org.scijava.search.module.RunModuleSearchActionFactory
 
supports(String) - Method in interface org.scijava.search.Searcher
Whether this plugin supports a search of this term.
supports(SearchResult) - Method in class org.scijava.search.snippet.RunSnippetActionFactory
 
supports(String) - Method in class org.scijava.search.snippet.SnippetSearcher
 
supports(SearchResult) - Method in class org.scijava.search.web.OpenInBrowserActionFactory
 
supports(File) - Method in interface org.scijava.text.TextFormat
 
supports(File) - Method in interface org.scijava.text.TextService
Gets whether the given file contains text data in a supported format.
supports(T) - Method in interface org.scijava.Typed
Gets whether this object is compatible with the given data object.
supports(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTButtonWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTChoiceWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTObjectWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTTextWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.awt.widget.AWTToggleWidget
 
supports(LinkedList<String>) - Method in class org.scijava.ui.console.HeadlessArgument
 
supports(LinkedList<String>) - Method in class org.scijava.ui.console.ShowUIArgument
 
supports(D, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
supports(D, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Gets whether this handler supports dropping the given data object onto the specified display.
supports(D) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Gets whether this handler supports dropping the given data object onto a compatible display.
supports(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Checks whether the given DragAndDropData can be dropped onto the specified display.
supports(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Checks whether the given object can be dropped onto the specified display.
supports(File) - Method in class org.scijava.ui.dnd.FileDragAndDropHandler
 
supports(List<?>, Display<?>) - Method in class org.scijava.ui.dnd.ListDragAndDropHandler
 
supports(File) - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingButtonWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingFileListWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
supports(WidgetModel) - Method in class org.scijava.ui.swing.widget.SwingToggleWidget
 
supports(WidgetModel) - Method in class org.scijava.widget.AbstractInputWidget
 
supports(InputWidget<?, ?>) - Method in interface org.scijava.widget.InputPanel
Gets whether the given widget would be appropriate for the given panel.
supports(WidgetModel) - Method in interface org.scijava.widget.InputWidget
Gets whether this widget would be appropriate for the given model.
supportsData(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
supportsData(DragAndDropData, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
supportsData(DragAndDropData) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Gets whether this handler supports dropping the given DragAndDropData onto a compatible display.
supportsData(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Gets whether this handler supports dropping the given DragAndDropData onto the specified display.
supportsDisplay(Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
supportsDisplay(Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Gets whether this handler supports dropping an assumed-to-be-compatible data object onto the given Display.
supportsItem(ModuleItem<?>) - Method in interface org.scijava.batch.BatchService
Returns true if type can be populated with batch inputs provided by this service
supportsItem(ModuleItem<?>) - Method in class org.scijava.batch.FileBatchService
Returns true if type is a File.
supportsModule(ModuleInfo) - Method in interface org.scijava.batch.BatchService
Returns true if moduleInfo has at least one input item whose type is supported by this service
supportsObject(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
supportsObject(Object, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
supportsObject(Object) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Gets whether this handler supports dropping the given object onto a compatible display.
supportsObject(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Gets whether this handler supports dropping the given object onto the specified display.
supportsOpen(String) - Method in class org.scijava.io.AbstractIOPlugin
 
supportsOpen(String) - Method in interface org.scijava.io.IOPlugin
Checks whether the I/O plugin can open data from the given source.
supportsOpen(Location) - Method in interface org.scijava.io.IOPlugin
Checks whether the I/O plugin can open data from the given location.
supportsOpen(Location) - Method in class org.scijava.script.io.ScriptIOPlugin
 
supportsOpen(Location) - Method in class org.scijava.table.DefaultTableIOPlugin
 
supportsOpen(String) - Method in class org.scijava.table.DefaultTableIOPlugin
 
supportsOpen(Location) - Method in class org.scijava.text.io.TextIOPlugin
 
supportsSave(String) - Method in class org.scijava.io.AbstractIOPlugin
 
supportsSave(String) - Method in interface org.scijava.io.IOPlugin
Checks whether the I/O plugin can save data to the given destination.
supportsSave(Location) - Method in interface org.scijava.io.IOPlugin
Checks whether the I/O plugin can save data to the given location.
supportsSave(Object, String) - Method in interface org.scijava.io.IOPlugin
Checks whether the I/O plugin can save the given data to the specified location.
supportsSave(Object, Location) - Method in interface org.scijava.io.IOPlugin
 
supportsSave(Object, String) - Method in class org.scijava.table.DefaultTableIOPlugin
 
supportsSave(Location) - Method in class org.scijava.table.DefaultTableIOPlugin
 
supportsSave(String) - Method in class org.scijava.table.DefaultTableIOPlugin
 
swap(short) - Static method in class org.scijava.util.Bytes
 
swap(char) - Static method in class org.scijava.util.Bytes
 
swap(int) - Static method in class org.scijava.util.Bytes
 
swap(long) - Static method in class org.scijava.util.Bytes
 
swap(float) - Static method in class org.scijava.util.Bytes
 
swap(double) - Static method in class org.scijava.util.Bytes
 
SWATCHES_CLASS_NAME - Static variable in class org.scijava.ui.swing.widget.SwingColorWidget
 
SwingApplicationFrame - Class in org.scijava.ui.swing
Swing implementation of ApplicationFrame.
SwingApplicationFrame(String) - Constructor for class org.scijava.ui.swing.SwingApplicationFrame
 
SwingButtonWidget - Class in org.scijava.ui.swing.widget
A Swing widget that displays a button and invokes the callback of a parameter when the button is clicked.
SwingButtonWidget() - Constructor for class org.scijava.ui.swing.widget.SwingButtonWidget
 
SwingChoiceRadioWidget - Class in org.scijava.ui.swing.widget
Swing implementation of multiple choice selector widget using JRadioButtons.
SwingChoiceRadioWidget() - Constructor for class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
SwingChoiceWidget - Class in org.scijava.ui.swing.widget
Swing implementation of multiple choice selector widget using a JComboBox.
SwingChoiceWidget() - Constructor for class org.scijava.ui.swing.widget.SwingChoiceWidget
 
SwingColorWidget - Class in org.scijava.ui.swing.widget
Swing implementation of color chooser widget.
SwingColorWidget() - Constructor for class org.scijava.ui.swing.widget.SwingColorWidget
 
SwingConsolePane - Class in org.scijava.ui.swing.console
Swing implementation of ConsolePane.
SwingConsolePane(Context) - Constructor for class org.scijava.ui.swing.console.SwingConsolePane
 
SwingDateWidget - Class in org.scijava.ui.swing.widget
Swing implementation of date selector widget.
SwingDateWidget() - Constructor for class org.scijava.ui.swing.widget.SwingDateWidget
 
SwingDialog - Class in org.scijava.ui.swing
A resizable dialog box containing a particular component.
SwingDialog(Component, int, boolean) - Constructor for class org.scijava.ui.swing.SwingDialog
Creates a dialog box containing the given component.
SwingDialog(Component, int, int, boolean) - Constructor for class org.scijava.ui.swing.SwingDialog
Creates a dialog box containing the given component.
SwingDialogPrompt - Class in org.scijava.ui.swing.sdi
TODO
SwingDialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Constructor for class org.scijava.ui.swing.sdi.SwingDialogPrompt
 
SwingDisplayPanel(DisplayWindow, Display<?>, EasySwingDisplayViewer<?>, JPanel) - Constructor for class org.scijava.ui.swing.viewer.EasySwingDisplayViewer.SwingDisplayPanel
 
SwingDisplayPanel - Class in org.scijava.ui.swing.viewer
Swing implementation of DisplayPanel.
SwingDisplayPanel() - Constructor for class org.scijava.ui.swing.viewer.SwingDisplayPanel
 
SwingDisplayWindow - Class in org.scijava.ui.swing.viewer
Swing class implementation of the DisplayWindow interface.
SwingDisplayWindow() - Constructor for class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
SwingFileListWidget - Class in org.scijava.ui.swing.widget
Swing implementation of FileListWidget.
SwingFileListWidget() - Constructor for class org.scijava.ui.swing.widget.SwingFileListWidget
 
SwingFileWidget - Class in org.scijava.ui.swing.widget
Swing implementation of file selector widget.
SwingFileWidget() - Constructor for class org.scijava.ui.swing.widget.SwingFileWidget
 
SwingIconService - Class in org.scijava.ui.swing
Swing implementation of the IconService.
SwingIconService() - Constructor for class org.scijava.ui.swing.SwingIconService
 
SwingInputHarvester - Class in org.scijava.ui.swing.widget
SwingInputHarvester is an InputHarvester that collects input parameter values from the user using a SwingInputPanel dialog box.
SwingInputHarvester() - Constructor for class org.scijava.ui.swing.widget.SwingInputHarvester
 
SwingInputPanel - Class in org.scijava.ui.swing.widget
Swing implementation of InputPanel.
SwingInputPanel() - Constructor for class org.scijava.ui.swing.widget.SwingInputPanel
 
SwingInputWidget<T> - Class in org.scijava.ui.swing.widget
Common superclass for Swing-based input widgets.
SwingInputWidget() - Constructor for class org.scijava.ui.swing.widget.SwingInputWidget
 
SwingJMenuBarCreator - Class in org.scijava.ui.swing.menu
Populates a JMenuBar with menu items from a ShadowMenu.
SwingJMenuBarCreator() - Constructor for class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
SwingJMenuCreator - Class in org.scijava.ui.swing.menu
Populates a JMenu with menu items from a ShadowMenu.
SwingJMenuCreator() - Constructor for class org.scijava.ui.swing.menu.SwingJMenuCreator
 
SwingJPopupMenuCreator - Class in org.scijava.ui.swing.menu
Populates a JPopupMenu with menu items from a ShadowMenu.
SwingJPopupMenuCreator() - Constructor for class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
SwingMdiDialogPrompt - Class in org.scijava.ui.swing.mdi
TODO
SwingMdiDialogPrompt(UserInterface, String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Constructor for class org.scijava.ui.swing.mdi.SwingMdiDialogPrompt
 
SwingMdiDisplayWindow - Class in org.scijava.ui.swing.mdi.viewer
TODO
SwingMdiDisplayWindow() - Constructor for class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
SwingMdiInputHarvester - Class in org.scijava.ui.swing.widget
SwingInputHarvester is an InputHarvester that collects input parameter values from the user using a SwingInputPanel dialog box.
SwingMdiInputHarvester() - Constructor for class org.scijava.ui.swing.widget.SwingMdiInputHarvester
 
SwingMdiUI - Class in org.scijava.ui.swing.mdi
Swing-based MDI user interface.
SwingMdiUI() - Constructor for class org.scijava.ui.swing.mdi.SwingMdiUI
 
SwingMessageWidget - Class in org.scijava.ui.swing.widget
Swing implementation of message widget.
SwingMessageWidget() - Constructor for class org.scijava.ui.swing.widget.SwingMessageWidget
 
SwingNumberWidget - Class in org.scijava.ui.swing.widget
Swing implementation of number chooser widget.
SwingNumberWidget() - Constructor for class org.scijava.ui.swing.widget.SwingNumberWidget
 
SwingObjectWidget - Class in org.scijava.ui.swing.widget
Swing implementation of object selector widget.
SwingObjectWidget() - Constructor for class org.scijava.ui.swing.widget.SwingObjectWidget
 
SwingScriptInfoWidget - Class in org.scijava.batch
 
SwingScriptInfoWidget() - Constructor for class org.scijava.batch.SwingScriptInfoWidget
 
SwingSDIUI - Class in org.scijava.ui.swing.sdi
Swing-based MDI user interface.
SwingSDIUI() - Constructor for class org.scijava.ui.swing.sdi.SwingSDIUI
 
SwingSearchBar - Class in org.scijava.ui.swing.search
Swing-based search bar for an application window.
SwingSearchBar(Context) - Constructor for class org.scijava.ui.swing.search.SwingSearchBar
 
SwingStatusBar - Class in org.scijava.ui.swing
Swing implementation of StatusBar.
SwingStatusBar(Context) - Constructor for class org.scijava.ui.swing.SwingStatusBar
 
SwingTableDisplayPanel - Class in org.scijava.ui.swing.viewer.table
This is the display panel for Tables.
SwingTableDisplayPanel(TableDisplay, DisplayWindow) - Constructor for class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel
 
SwingTableDisplayPanel.NullTableModel - Class in org.scijava.ui.swing.viewer.table
 
SwingTableDisplayPanel.TableModel - Class in org.scijava.ui.swing.viewer.table
A Swing SwingTableDisplayPanel.TableModel backed by an ImageJ Table.
SwingTableDisplayViewer - Class in org.scijava.ui.swing.viewer.table
A Swing Table display viewer, which displays tables in a JTable.
SwingTableDisplayViewer() - Constructor for class org.scijava.ui.swing.viewer.table.SwingTableDisplayViewer
 
SwingTextDisplayPanel - Class in org.scijava.ui.swing.viewer.text
This is the display panel for Strings.
SwingTextDisplayPanel(TextDisplay, DisplayWindow) - Constructor for class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
SwingTextDisplayViewer - Class in org.scijava.ui.swing.viewer.text
A Swing text display viewer, which displays strings in a simple text panel.
SwingTextDisplayViewer() - Constructor for class org.scijava.ui.swing.viewer.text.SwingTextDisplayViewer
 
SwingTextWidget - Class in org.scijava.ui.swing.widget
Swing implementation of text field widget.
SwingTextWidget() - Constructor for class org.scijava.ui.swing.widget.SwingTextWidget
 
SwingToggleWidget - Class in org.scijava.ui.swing.widget
Swing implementation of boolean toggle widget.
SwingToggleWidget() - Constructor for class org.scijava.ui.swing.widget.SwingToggleWidget
 
SwingToolBar - Class in org.scijava.ui.swing
Button bar with selectable tools, similar to ImageJ 1.x.
SwingToolBar(Context) - Constructor for class org.scijava.ui.swing.SwingToolBar
 
SwingUI - Interface in org.scijava.ui.swing
Base interface for Swing-based user interfaces.
switchTo(String, int) - Method in class org.scijava.ui.swing.script.TextEditor
 
switchTo(File, int) - Method in class org.scijava.ui.swing.script.TextEditor
 
switchTo(File) - Method in class org.scijava.ui.swing.script.TextEditor
 
switchTo(int) - Method in class org.scijava.ui.swing.script.TextEditor
 
SyntaxHighlighter - Interface in org.scijava.ui.swing.script
Placeholder interface for syntax highlighters.
SyntaxTree - Class in org.scijava.parsington
A syntax tree corresponding to an expression.
SyntaxTree(LinkedList<Object>) - Constructor for class org.scijava.parsington.SyntaxTree
Creates a syntax tree built from the given postfix token queue.
SYSTEM_PROPERTIES_SETTING - Static variable in class org.scijava.grab.DefaultGrabService
 
systemAboutToSleep(SystemSleepEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
systemAweoke(SystemSleepEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
systemAwoke(SystemSleepEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
SystemClipboard - Interface in org.scijava.ui
UI agnostic representation of the system clipboard.
SystemInformation - Class in org.scijava.plugins.commands.debug
Dumps the full system configuration, including installed libraries and Java system properties.
SystemInformation() - Constructor for class org.scijava.plugins.commands.debug.SystemInformation
 
systemPath - Variable in class org.scijava.minimaven.Coordinate
 
SystemPropertyArgument - Class in org.scijava.console
Handles the -D command line argument, in an analogous way to tools such as Java and Maven.
SystemPropertyArgument() - Constructor for class org.scijava.console.SystemPropertyArgument
 

T

TAB_DIV_LOCATION - Static variable in class org.scijava.ui.swing.script.TextEditor
 
TAB_DIV_ORIENTATION - Static variable in class org.scijava.ui.swing.script.TextEditor
 
TAB_SIZE_PREFS - Static variable in class org.scijava.ui.swing.script.EditorPane
 
Table<C extends Column<? extends T>,T> - Interface in org.scijava.table
A table of values.
TableDisplay - Interface in org.scijava.table
Interface for Table Displays.
TableDisplayPanel - Interface in org.scijava.ui.viewer.table
This is a panel that can go inside a display window.
TableDisplayViewer - Interface in org.scijava.ui.viewer.table
A display viewer for a display of Tables.
TableIOOptions - Class in org.scijava.table.io
 
TableIOOptions() - Constructor for class org.scijava.table.io.TableIOOptions
 
TableIOOptions.Values - Class in org.scijava.table.io
 
TableIOPlugin - Interface in org.scijava.table.io
Abstract plugin class for saving and loading tables
TableIOService - Interface in org.scijava.table.io
 
TableLoader - Class in org.scijava.table
Loads a text file containing comma separated values into a DoubleTable.
TableLoader() - Constructor for class org.scijava.table.TableLoader
 
tableModel - Variable in class org.scijava.ui.swing.commands.CommandFinderPanel
 
TableModel(Table<?, ?>) - Constructor for class org.scijava.ui.swing.viewer.table.SwingTableDisplayPanel.TableModel
 
Tables - Class in org.scijava.table
Utility methods for constructing tables.
TABS_EMULATED_PREFS - Static variable in class org.scijava.ui.swing.script.EditorPane
 
TagPanelEditor - Class in org.scijava.ui.behaviour.io.gui
 
TagPanelEditor(Collection<String>) - Constructor for class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
TagPanelEditor(Collection<String>, boolean) - Constructor for class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
TagPanelEditor(Collection<String>, boolean, Map<String, String>) - Constructor for class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
TagPanelEditor.TagSelectionChangeListener - Interface in org.scijava.ui.behaviour.io.gui
 
tagPanels - Variable in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
tags - Variable in class org.scijava.ui.behaviour.io.gui.TagPanelEditor
 
tagSelectionChanged() - Method in interface org.scijava.ui.behaviour.io.gui.TagPanelEditor.TagSelectionChangeListener
 
TAN - Static variable in class org.scijava.util.Colors
 
target - Variable in class org.scijava.minimaven.MavenProject
 
targetVersion - Variable in class org.scijava.minimaven.MavenProject
 
task() - Method in interface org.scijava.download.Download
 
Task - Interface in org.scijava.task
A self-aware job which reports its status and progress as it runs.
TaskEvent - Class in org.scijava.task.event
An event indicating a Task has been updated.
TaskEvent(Task) - Constructor for class org.scijava.task.event.TaskEvent
 
TaskService - Interface in org.scijava.task
Service for working with Tasks.
TEAL - Static variable in class org.scijava.util.Colors
 
TemplateSearcher - Class in org.scijava.search.template
 
TemplateSearcher() - Constructor for class org.scijava.search.template.TemplateSearcher
 
TemplateSearchResult - Class in org.scijava.search.template
 
TemplateSearchResult(String, URL) - Constructor for class org.scijava.search.template.TemplateSearchResult
 
terminate() - Method in class org.scijava.search.DefaultSearchOperation
 
terminate() - Method in interface org.scijava.search.SearchOperation
Asynchronously terminates the search.
TestUtils - Class in org.scijava.test
A bunch of helpful functions for unit tests.
TestUtils() - Constructor for class org.scijava.test.TestUtils
 
text() - Method in class org.scijava.AbstractGateway
 
text() - Method in interface org.scijava.Gateway
Gets this application context's TextService.
text() - Method in class org.scijava.log.LogMessage
The content of this log message.
textArea - Variable in class org.scijava.ui.swing.script.ErrorHandler
 
TextArea(int, int) - Constructor for class org.scijava.ui.swing.script.PromptPane.TextArea
 
TextDisplay - Interface in org.scijava.display
Interface for text Displays.
TextDisplayPanel - Interface in org.scijava.ui.viewer.text
This is a panel that can go inside a display window.
TextDisplayTest - Class in org.scijava.plugins.commands.debug
A test of text displays.
TextDisplayTest() - Constructor for class org.scijava.plugins.commands.debug.TextDisplayTest
 
TextDisplayViewer - Interface in org.scijava.ui.viewer.text
A display viewer for Strings.
TextEditor - Class in org.scijava.ui.swing.script
A versatile script editor for SciJava applications.
TextEditor(Context) - Constructor for class org.scijava.ui.swing.script.TextEditor
 
TextEditor.AcceleratorTriplet - Class in org.scijava.ui.swing.script
 
TextEditor.Executer - Class in org.scijava.ui.swing.script
Generic Thread that keeps a starting time stamp, sets the priority to normal and starts itself.
TextEditor.FindClassSourceAndJavadoc - Class in org.scijava.ui.swing.script
 
TextEditorTab - Class in org.scijava.ui.swing.script
Tab in a TextEditor containing an EditorPane.
TextEditorTab(TextEditor) - Constructor for class org.scijava.ui.swing.script.TextEditorTab
 
TextFormat - Interface in org.scijava.text
TextFormat is a plugin that provides handling for a text markup language.
TextIOPlugin - Class in org.scijava.text.io
IOPlugin for text conversion to HTML.
TextIOPlugin() - Constructor for class org.scijava.text.io.TextIOPlugin
 
TextIOService - Interface in org.scijava.text.io
TypedIOService for opening and saving text data
TextService - Interface in org.scijava.text
Interface for service that works with text formats.
textValueChanged(TextEvent) - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
textValueChanged(TextEvent) - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
textValueChanged(TextEvent) - Method in class org.scijava.ui.awt.widget.AWTTextWidget
 
TextWidget<U> - Interface in org.scijava.widget
Widget interface for text fields and areas.
TextWrapper(int) - Constructor for class org.scijava.ui.swing.script.FileFunctions.TextWrapper
 
THISTLE - Static variable in class org.scijava.util.Colors
 
thread() - Method in class org.scijava.AbstractGateway
 
thread() - Method in interface org.scijava.Gateway
Gets this application context's ThreadService.
THREAD_COUNT - Static variable in class org.scijava.util.MirrorWebsite
 
ThreadService - Interface in org.scijava.thread
Interface for the thread handling service.
ThreadService.ThreadContext - Enum in org.scijava.thread
 
throwable() - Method in class org.scijava.log.LogMessage
Exception associated with the log message.
tick(Timing) - Static method in class org.scijava.util.Timing
 
tick(Timing, Object) - Static method in class org.scijava.util.Timing
 
tileFramesHorizontally() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
 
tileFramesVertically() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
 
time() - Method in class org.scijava.log.LogMessage
Time of the creation of the log message.
timestamp - Variable in class org.scijava.minimaven.SnapshotPOMHandler
 
Timing - Class in org.scijava.util
A helper class to help with optimizing the performance of a list of operations.
Timing() - Constructor for class org.scijava.util.Timing
 
title() - Method in class org.scijava.search.classes.ClassesSearcher
 
title() - Method in class org.scijava.search.module.ModuleSearcher
 
title(ModuleInfo) - Static method in class org.scijava.search.module.ModuleSearcher
Gets a human-readable title for the module, or null if none.
title() - Method in interface org.scijava.search.Searcher
Short descriptive string identifying the sort of results found by this plugin.
title() - Method in class org.scijava.search.snippet.SnippetSearcher
 
title() - Method in class org.scijava.search.template.TemplateSearcher
 
title() - Method in class org.scijava.search.web.BISESearcher
 
title() - Method in class org.scijava.search.web.ImageForumSearcher
 
title() - Method in class org.scijava.search.web.ImageJWikiSearcher
 
TMP_PREFIX - Static variable in class org.scijava.nativelib.BaseJniExtractor
 
toArray() - Method in class org.scijava.display.AbstractDisplay
 
toArray(U[]) - Method in class org.scijava.display.AbstractDisplay
 
toArray() - Method in class org.scijava.menu.ShadowMenu
 
toArray(T[]) - Method in class org.scijava.menu.ShadowMenu
 
toArray() - Method in class org.scijava.object.ObjectIndex
 
toArray(T[]) - Method in class org.scijava.object.ObjectIndex
 
toArray() - Method in interface org.scijava.table.Column
 
toArray(E[]) - Method in interface org.scijava.table.Column
 
toArray() - Method in interface org.scijava.table.Table
Returns an array containing all of the columns in the table in proper sequence (from first to last column).
toArray(A[]) - Method in interface org.scijava.table.Table
Returns an array containing all of the column in the table in proper sequence (from first to last column); the runtime type of the returned array is that of the specified array.
toArray() - Method in class org.scijava.util.LastRecentlyUsed
 
toArray(S[]) - Method in class org.scijava.util.LastRecentlyUsed
 
toByteArray(long, int) - Method in interface org.scijava.io.ByteBank
Copies part of this buffer into a newly allocated byte array.
toByteArray() - Method in interface org.scijava.io.ByteBank
Copies this entire buffer into a newly allocated byte array.
toCollection(Object) - Static method in class org.scijava.util.ArrayUtils
Converts the provided Object to a Collection implementation.
toDouble(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to a double.
toDouble(byte[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 8 bytes of a byte array beyond the given offset to a double.
toDouble(byte[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 8 bytes of a byte array to a double.
toDouble(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to a double.
toDouble(short[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 8 bytes of a byte array beyond the given offset to a double.
toDouble(short[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 8 bytes of a byte array to a double.
toFloat(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to a float.
toFloat(byte[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 4 bytes of a byte array beyond a given offset to a float.
toFloat(byte[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 4 bytes of a byte array to a float.
toFloat(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond a given offset to a float.
toFloat(short[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 4 bytes of a byte array beyond a given offset to a float.
toFloat(short[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 4 bytes of a byte array to a float.
toggleBookmark() - Method in class org.scijava.ui.swing.script.EditorPane
Add/remove bookmark for line containing the cursor/caret.
toggleBookmark(int) - Method in class org.scijava.ui.swing.script.EditorPane
Add/remove bookmark for a specific line.
toggleBookmark() - Method in class org.scijava.ui.swing.script.TextEditor
 
toggleErrors() - Method in class org.scijava.ui.swing.script.TextEditorTab
 
toggleSourcesPanel() - Method in class org.scijava.ui.swing.console.LoggingPanel
 
ToggleWidget<U> - Interface in org.scijava.widget
Widget interface for boolean toggles.
toHTML(Set<Class<? extends SciJavaEvent>>, Set<Class<? extends SciJavaEvent>>) - Method in class org.scijava.event.DefaultEventHistory
 
toHTML(boolean) - Method in class org.scijava.event.EventDetails
 
toHTML(Set<Class<? extends SciJavaEvent>>, Set<Class<? extends SciJavaEvent>>) - Method in interface org.scijava.event.EventHistory
Gets the recorded event history as an HTML string.
toHTMLColor() - Method in class org.scijava.util.ColorRGB
Convert this ColorRGB to a string in the format specified by CSS Color Module Level 3 - W3C Recommendation 07 June 2011.
toInt(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to an int.
toInt(byte[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 4 bytes of a byte array beyond the given offset to an int.
toInt(byte[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 4 bytes of a byte array to an int.
toInt(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to an int.
toInt(short[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 4 bytes of a byte array beyond the given offset to an int.
toInt(short[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 4 bytes of a byte array to an int.
token() - Method in class org.scijava.parsington.SyntaxTree
 
Token - Class in org.scijava.parsington
Base class for various types of tokens: operators, groups, functions and variables.
Token(String) - Constructor for class org.scijava.parsington.Token
 
tokenEquals(Token, char[]) - Static method in class org.scijava.ui.swing.script.TokenFunctions
 
TokenFunctions - Class in org.scijava.ui.swing.script
TODO
TokenFunctions(RSyntaxTextArea) - Constructor for class org.scijava.ui.swing.script.TokenFunctions
 
Tokens - Class in org.scijava.parsington
Utility methods for working with tokens.
toLong(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to a long.
toLong(byte[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 8 bytes of a byte array beyond the given offset to a long.
toLong(byte[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 8 bytes of a byte array to a long.
toLong(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to a long.
toLong(short[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 8 bytes of a byte array beyond the given offset to a long.
toLong(short[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 8 bytes of a byte array to a long.
TOMATO - Static variable in class org.scijava.util.Colors
 
toMillis(int) - Method in class org.scijava.util.TunePlayer
Converts the given note length to milliseconds, by the current tempo.
toNumber(Object, Class<?>) - Static method in class org.scijava.util.NumberUtils
Converts the given object to a Number of the specified type, or null if the types are incompatible.
tool() - Method in class org.scijava.AbstractGateway
 
tool() - Method in interface org.scijava.Gateway
Gets this application context's ToolService.
Tool - Interface in org.scijava.tool
Interface for tools.
ToolActivatedEvent - Class in org.scijava.tool.event
An event indicating a tool has been activated.
ToolActivatedEvent(Tool) - Constructor for class org.scijava.tool.event.ToolActivatedEvent
 
ToolBar - Interface in org.scijava.ui
Common interface for tool bars, which are button bars with selectable tools, similar to ImageJ 1.x.
ToolDeactivatedEvent - Class in org.scijava.tool.event
An event indicating a tool has been deactivated.
ToolDeactivatedEvent(Tool) - Constructor for class org.scijava.tool.event.ToolDeactivatedEvent
 
ToolEvent - Class in org.scijava.tool.event
An event indicating something has happened to a tool.
ToolEvent(Tool) - Constructor for class org.scijava.tool.event.ToolEvent
 
ToolService - Interface in org.scijava.tool
Interface for service that tracks available tools.
toShort(byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to a short.
toShort(byte[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 2 bytes of a byte array beyond the given offset to a short.
toShort(byte[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 2 bytes of a byte array to a short.
toShort(short[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first len bytes of a byte array beyond the given offset to a short.
toShort(short[], int, boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 2 bytes of a byte array beyond the given offset to a short.
toShort(short[], boolean) - Static method in class org.scijava.util.Bytes
Translates up to the first 2 bytes of a byte array to a short.
toSimpleName(Class<?>) - Static method in class org.scijava.annotations.legacy.LegacyReader
 
toString() - Method in class org.scijava.AbstractBasicDetails
 
toString() - Method in class org.scijava.AbstractUIDetails
 
toString() - Method in class org.scijava.app.event.StatusEvent
 
toString() - Method in class org.scijava.command.CommandInfo
 
toString() - Method in class org.scijava.command.CommandModule
 
toString() - Method in class org.scijava.console.OutputEvent
 
toString() - Method in class org.scijava.display.AbstractDisplay
 
toString() - Method in class org.scijava.display.event.DisplayEvent
 
toString() - Method in class org.scijava.display.event.input.InputEvent
 
toString() - Method in class org.scijava.display.event.input.KyEvent
 
toString() - Method in class org.scijava.display.event.input.MsButtonEvent
 
toString() - Method in class org.scijava.display.event.window.WinEvent
 
toString() - Method in class org.scijava.event.SciJavaEvent
 
toString() - Method in class org.scijava.input.Accelerator
 
toString() - Method in class org.scijava.input.InputModifiers
 
toString() - Method in class org.scijava.io.event.IOEvent
 
toString() - Method in class org.scijava.io.location.AbstractLocation
 
toString() - Method in class org.scijava.log.LogMessage
 
toString() - Method in class org.scijava.log.LogSource
 
toString() - Method in class org.scijava.menu.ShadowMenu
 
toString() - Method in class org.scijava.MenuEntry
 
toString() - Method in class org.scijava.minimaven.Coordinate
 
toString() - Method in class org.scijava.minimaven.MavenProject
 
toString() - Method in class org.scijava.minimaven.ReadInto
 
toString() - Method in class org.scijava.module.AbstractModuleItem
 
toString() - Method in class org.scijava.module.event.ModuleEvent
 
toString() - Method in class org.scijava.module.event.ModuleProcessEvent
 
toString() - Method in class org.scijava.object.event.ListEvent
 
toString() - Method in class org.scijava.object.event.ObjectEvent
 
toString() - Method in class org.scijava.object.ObjectIndex
 
toString() - Method in class org.scijava.optional.AbstractOptions.AbstractValues
 
toString() - Method in class org.scijava.optional.AbstractOptions
 
toString() - Method in class org.scijava.optional.AbstractOptions.ValuesToString
 
toString() - Method in class org.scijava.options.event.OptionsEvent
 
toString() - Method in class org.scijava.parsington.Group
 
toString() - Method in class org.scijava.parsington.Position
 
toString() - Method in class org.scijava.parsington.SubSequence
 
toString() - Method in class org.scijava.parsington.SyntaxTree
 
toString() - Method in class org.scijava.parsington.Token
 
toString() - Method in class org.scijava.platform.event.AppFocusEvent
 
toString() - Method in class org.scijava.platform.event.AppMenusCreatedEvent
 
toString() - Method in class org.scijava.platform.event.AppSleepEvent
 
toString() - Method in class org.scijava.platform.event.AppUserSessionEvent
 
toString() - Method in class org.scijava.platform.event.AppVisibleEvent
 
toString() - Method in class org.scijava.plugin.AbstractRichPlugin
 
toString() - Method in class org.scijava.plugin.PluginInfo
 
toString() - Method in class org.scijava.script.AbstractScriptLanguage
 
toString() - Method in class org.scijava.search.DefaultSearchAction
 
toString() - Method in class org.scijava.service.AbstractService
 
toString() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
toString() - Method in class org.scijava.task.event.TaskEvent
 
toString() - Method in class org.scijava.tool.event.ToolEvent
 
toString() - Method in class org.scijava.ui.behaviour.InputTrigger
 
toString() - Method in class org.scijava.ui.behaviour.io.InputTriggerDescription
 
toString() - Method in class org.scijava.ui.dnd.event.DragAndDropEvent
 
toString() - Method in class org.scijava.ui.dnd.event.DragEnterEvent
 
toString() - Method in class org.scijava.ui.dnd.event.DropEvent
 
toString() - Method in class org.scijava.ui.dnd.MIMEType
 
toString() - Method in class org.scijava.ui.event.UIEvent
 
toString() - Method in class org.scijava.ui.swing.script.Bookmark
 
toString() - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
toString() - Method in class org.scijava.ui.swing.script.TextEditor.Executer
 
toString() - Method in class org.scijava.util.ColorRGB
 
toString() - Method in class org.scijava.util.IntCoords
 
toString() - Method in class org.scijava.util.IntRect
 
toString() - Method in class org.scijava.util.ReadInto
Return the output as a String unless a PrintStream was specified in the constructor.
toString() - Method in class org.scijava.util.RealCoords
 
toString() - Method in class org.scijava.util.RealRect
 
toString() - Method in class org.scijava.util.StringMaker
 
toString() - Method in class org.scijava.util.XML
 
trace(Object) - Method in interface org.scijava.log.Logger
 
trace(Throwable) - Method in interface org.scijava.log.Logger
 
trace(Object, Throwable) - Method in interface org.scijava.log.Logger
 
TRACE - Static variable in class org.scijava.log.LogLevel
 
TRACE - Static variable in interface org.scijava.log.LogService
Deprecated.
transpose(Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
transpose(Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.TRANSPOSE operator.
TRANSPOSE - Static variable in class org.scijava.parsington.Operators
 
TreeNode<T> - Interface in org.scijava.util
A wrapper around a data object, for storing it in a tree structure.
treeNodesChanged(TreeModelEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
 
treeNodesInserted(TreeModelEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
 
treeNodesRemoved(TreeModelEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
 
treeStructureChanged(TreeModelEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
 
TriggerBehaviourBindings - Class in org.scijava.ui.behaviour.util
Maintains lists of BehaviourMaps and InputTriggerMaps, which are chained to a concatenated InputTriggerMap and a concatenated BehaviourMap.
TriggerBehaviourBindings() - Constructor for class org.scijava.ui.behaviour.util.TriggerBehaviourBindings
Create chained maps just consisting of empty roots.
TunePlayer - Class in org.scijava.util
Any QBasic fans out there? ;-)
TunePlayer() - Constructor for class org.scijava.util.TunePlayer
 
TunePlayer(int) - Constructor for class org.scijava.util.TunePlayer
 
TURQUOISE - Static variable in class org.scijava.util.Colors
 
type - Variable in class org.scijava.script.ParameterObject
Deprecated.
 
type(Class<?>) - Method in class org.scijava.table.io.TableIOOptions
Alternatifely to guessing the data type or specifying a parser, specify the desired data type of all table entries
Typed<T> - Interface in org.scijava
An object with an associated type (i.e., Class), which can be queried at runtime.
TypedIOService<D> - Interface in org.scijava.io
Interface for high-level data I/O: opening and saving data of a specific type.
TypedPlugin<D> - Interface in org.scijava.plugin
Interface for plugins with an associated type (i.e., Class).
TypedService<DT,PT extends TypedPlugin<DT>> - Interface in org.scijava.plugin
A service for managing a particular sort of TypedPlugin.
Types - Class in org.scijava.util
Utility class for working with generic types, fields and methods.

U

ui() - Method in class org.scijava.AbstractGateway
 
ui() - Method in interface org.scijava.Gateway
Gets this application context's UIService.
ui() - Method in class org.scijava.ui.AbstractUIInputWidget
 
ui(String) - Method in class org.scijava.ui.AbstractUIInputWidget
 
ui() - Method in class org.scijava.ui.awt.widget.AWTInputWidget
 
ui() - Method in class org.scijava.ui.swing.widget.SwingInputWidget
 
UI_PROPERTY - Static variable in interface org.scijava.ui.UIService
System property to set for overriding the default UI.
UIArgument - Class in org.scijava.ui.console
Handles the --ui command line argument.
UIArgument() - Constructor for class org.scijava.ui.console.UIArgument
 
UIComponent<C> - Interface in org.scijava.widget
An interface identifying an object housed within a UI component.
UIDetails - Interface in org.scijava
An interface defining details useful for generating relevant user interface elements.
UIEvent - Class in org.scijava.ui.event
An event indicating activity relating to a UserInterface.
UIEvent(UserInterface) - Constructor for class org.scijava.ui.event.UIEvent
 
UIPreprocessor - Class in org.scijava.ui
The UI preprocessor automatically populates module UserInterface inputs with the UIService's default UI instance, if compatible.
UIPreprocessor() - Constructor for class org.scijava.ui.UIPreprocessor
 
UIService - Interface in org.scijava.ui
Interface for service that handles user interfaces.
UIShownEvent - Class in org.scijava.ui.event
An event indicating a user interface was shown.
UIShownEvent(UserInterface) - Constructor for class org.scijava.ui.event.UIShownEvent
 
unbox(Class<T>) - Static method in class org.scijava.util.Types
Returns the primitive Class closest to the given type.
uncancel() - Method in class org.scijava.command.DynamicCommand
 
uncaughtException(Thread, Throwable) - Method in class org.scijava.log.DefaultUncaughtExceptionHandler
 
undoLastAction() - Method in class org.scijava.ui.swing.script.EditorPane
 
UnimplementedCommand - Class in org.scijava.command
A command that is not yet implemented.
UnimplementedCommand() - Constructor for class org.scijava.command.UnimplementedCommand
 
uninstall(RSyntaxTextArea) - Method in class org.scijava.ui.swing.script.languagesupport.JythonLanguageSupportPlugin
 
UnitUtils - Class in org.scijava.util
Utility methods for working with units.
UNKNOWN_OPTION - Static variable in class org.scijava.ui.swing.SwingDialog
Catch-all return value of SwingDialog.show() if return value is non-integer.
unpack(long, byte[], int, int, boolean) - Static method in class org.scijava.util.Bytes
Translates nBytes of the given long and places the result in the given byte array.
Unresolved - Class in org.scijava.parsington.eval
An unresolved/unknown variable value.
Unresolved(String) - Constructor for class org.scijava.parsington.eval.Unresolved
 
unresolveInput(String) - Method in class org.scijava.module.AbstractModule
 
unresolveInput(String) - Method in interface org.scijava.module.Module
Marks the input with the given name as unresolved.
unresolveOutput(String) - Method in class org.scijava.module.AbstractModule
 
unresolveOutput(String) - Method in interface org.scijava.module.Module
Marks the output with the given name as unresolved.
UNSIGNED_RIGHT_SHIFT - Static variable in class org.scijava.parsington.Operators
 
UNSIGNED_RIGHT_SHIFT_ASSIGN - Static variable in class org.scijava.parsington.Operators
 
unsignedRightShift(Object, Object) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
unsignedRightShift(int, int) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
unsignedRightShift(long, long) - Method in class org.scijava.parsington.eval.DefaultEvaluator
 
unsignedRightShift(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
Applies the Operators.UNSIGNED_RIGHT_SHIFT operator.
unsignedRightShiftAssign(Object, Object) - Method in class org.scijava.parsington.eval.AbstractStandardStackEvaluator
 
unsignedRightShiftAssign(Object, Object) - Method in interface org.scijava.parsington.eval.StandardEvaluator
unsubscribe(Collection<EventSubscriber<?>>) - Method in class org.scijava.event.DefaultEventService
 
unsubscribe(Collection<EventSubscriber<?>>) - Method in interface org.scijava.event.EventService
Removes all the given subscribers; they will no longer be notified when events are published.
update(EventService) - Method in class org.scijava.command.CommandInfo
 
update(ModuleItem<T>, T) - Method in class org.scijava.command.InteractiveCommand
 
update() - Method in class org.scijava.display.AbstractDisplay
 
update() - Method in interface org.scijava.display.Display
Updates and redraws the display onscreen.
update(ModuleInfo) - Method in class org.scijava.menu.ShadowMenu
Updates the menu structure to reflect changes in the given module.
update(EventService) - Method in interface org.scijava.module.ModuleInfo
Notifies interested parties that the module info has been modified.
update() - Method in class org.scijava.ui.behaviour.AbstractMouseAndKeyHandler
Make sure that the internal behaviour lists are up to date.
update() - Method in class org.scijava.ui.swing.script.VarsPane
 
updateAll(Collection<? extends ModuleInfo>) - Method in class org.scijava.menu.ShadowMenu
Updates the menu structure to reflect changes in the given modules.
updateAnnotationIndex(ClassLoader) - Static method in class org.scijava.annotations.EclipseHelper
Updates the annotation index in the current Eclipse project.
updateChildrenList(DefaultTreeModel, FileFilter) - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
updateColor() - Method in class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
updatedChildrenFiles(boolean, FileFilter) - Method in class org.scijava.ui.swing.script.FileSystemTree.Node
 
updateInput(ModuleItem<?>) - Method in class org.scijava.command.InteractiveCommand
 
updateInterval - Variable in class org.scijava.minimaven.BuildEnvironment
 
updateKeyConfig(InputTriggerConfig) - Method in class org.scijava.ui.behaviour.util.Actions
Clears the InputMap and re-adds all (String) action keys from ActionMap using the provided keyConfig.
updateKeyConfig(InputTriggerConfig, boolean) - Method in class org.scijava.ui.behaviour.util.Actions
Clears the InputMap and re-adds all (String) action keys from ActionMap using the provided keyConfig.
updateKeyConfig(InputTriggerConfig) - Method in class org.scijava.ui.behaviour.util.Behaviours
Clears the InputTriggerMap and re-adds all behaviour keys from BehaviourMap using the provided keyConfig.
updateKeyConfig(InputTriggerConfig, boolean) - Method in class org.scijava.ui.behaviour.util.Behaviours
Clears the InputTriggerMap and re-adds all behaviour keys from BehaviourMap using the provided keyConfig.
updateModel() - Method in class org.scijava.widget.AbstractInputWidget
 
updateModel() - Method in interface org.scijava.widget.InputWidget
Updates the model to reflect the latest widget state.
updateRecursively(File, File, boolean) - Method in class org.scijava.minimaven.MavenProject
 
updateTabAndFontSize(boolean) - Method in class org.scijava.ui.swing.script.TextEditor
 
updateTitle() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
updateUILater() - Method in class org.scijava.ui.swing.script.FileSystemTree
 
updownarrows - Variable in class org.scijava.ui.swing.script.TextEditorTab
 
upOctave() - Method in class org.scijava.util.TunePlayer
 
upToDate(boolean) - Method in class org.scijava.minimaven.MavenProject
 
URILocation - Class in org.scijava.io.location
Location backed by a URI string.
URILocation(URI) - Constructor for class org.scijava.io.location.URILocation
 
URILocation(String) - Constructor for class org.scijava.io.location.URILocation
 
url(String) - Method in class org.scijava.search.javadoc.DefaultJavadocService
 
url(Class<?>) - Method in interface org.scijava.search.javadoc.JavadocService
Gets the URL for the javadoc corresponding to the given class.
url(String) - Method in interface org.scijava.search.javadoc.JavadocService
Gets the URL for the javadoc corresponding to the given class.
url() - Method in class org.scijava.search.template.TemplateSearchResult
 
url() - Method in class org.scijava.search.web.WebSearchResult
 
URLLocation - Class in org.scijava.io.location
Location backed by a URL.
URLLocation(URL) - Constructor for class org.scijava.io.location.URLLocation
 
urls - Variable in class org.scijava.ui.swing.script.autocompletion.ClassUtil.JarProperties
 
urlToFile(URL) - Static method in class org.scijava.util.FileUtils
Converts the given URL to its corresponding File.
urlToFile(String) - Static method in class org.scijava.util.FileUtils
Converts the given URL string to its corresponding File.
UserInterface - Interface in org.scijava.ui
An end-user SciJava application user interface.
userSessionActivated(UserSessionEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 
userSessionDeactivated(UserSessionEvent) - Method in class org.scijava.plugins.platforms.macos.MacOSAppEventDispatcher
 

V

validate(Module) - Method in class org.scijava.module.AbstractModuleItem
 
validate(Module) - Method in interface org.scijava.module.ModuleItem
Invokes this item's validation function, if any, on the given module.
Validated - Interface in org.scijava
An object whose validity can be confirmed after initialization.
ValidityPreprocessor - Class in org.scijava.module.process
A preprocessor plugin that verifies module validity.
ValidityPreprocessor() - Constructor for class org.scijava.module.process.ValidityPreprocessor
 
ValidityProblem - Exception in org.scijava
An exception used to record a validity problem with a Validated object.
ValidityProblem() - Constructor for exception org.scijava.ValidityProblem
 
ValidityProblem(String) - Constructor for exception org.scijava.ValidityProblem
 
ValidityProblem(String, Throwable) - Constructor for exception org.scijava.ValidityProblem
 
ValidityProblem(Throwable) - Constructor for exception org.scijava.ValidityProblem
 
value(String) - Static method in class org.scijava.log.LogLevel
Extracts the log level value from a string.
value() - Method in interface org.scijava.parse.Item
Gets the value of the item.
value(Object) - Method in class org.scijava.parsington.eval.AbstractEvaluator
 
value(Object) - Method in interface org.scijava.parsington.eval.Evaluator
Gets the value of the given token.
value - Variable in class org.scijava.script.ParameterObject
Deprecated.
 
valueChanged(TreeSelectionEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
 
valueOf(String) - Static method in enum org.scijava.console.OutputEvent.Source
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.display.event.DisplayUpdatedEvent.DisplayUpdateLevel
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.input.KeyCode
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.input.MouseCursor
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.io.handle.DataHandle.ByteOrder
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.ItemIO
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.ItemVisibility
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.nativelib.NativeLibraryUtil.Architecture
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.parsington.Operator.Associativity
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.thread.ThreadService.ThreadContext
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.ui.Arrangeable.Arrangement
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.ui.DialogPrompt.MessageType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.ui.DialogPrompt.OptionType
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.ui.DialogPrompt.Result
Returns the enum constant of this type with the specified name.
valueOf(String) - Static method in enum org.scijava.ui.swing.console.LogFormatter.Field
Returns the enum constant of this type with the specified name.
values() - Static method in enum org.scijava.console.OutputEvent.Source
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.display.event.DisplayUpdatedEvent.DisplayUpdateLevel
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.input.KeyCode
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.input.MouseCursor
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.io.handle.DataHandle.ByteOrder
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.ItemIO
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.ItemVisibility
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.nativelib.NativeLibraryUtil.Architecture
Returns an array containing the constants of this enum type, in the order they are declared.
Values - Interface in org.scijava.optional
 
values() - Static method in enum org.scijava.parsington.Operator.Associativity
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
values() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
values() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
values() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
values - Variable in class org.scijava.table.io.ColumnTableIOOptions
 
Values() - Constructor for class org.scijava.table.io.ColumnTableIOOptions.Values
 
values - Variable in class org.scijava.table.io.TableIOOptions
 
Values() - Constructor for class org.scijava.table.io.TableIOOptions.Values
 
values() - Static method in enum org.scijava.thread.ThreadService.ThreadContext
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.ui.Arrangeable.Arrangement
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.ui.DialogPrompt.MessageType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.ui.DialogPrompt.OptionType
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.ui.DialogPrompt.Result
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in enum org.scijava.ui.swing.console.LogFormatter.Field
Returns an array containing the constants of this enum type, in the order they are declared.
values() - Static method in class org.scijava.util.Colors
Gets the list of all preset colors.
valuesFromTextFile(BufferedInputStream) - Method in class org.scijava.table.TableLoader
Loads the values of a table stored in a text file as a ResultsTable.
valuesFromTextFile(String) - Method in class org.scijava.table.TableLoader
Loads the values of a table stored in a text file as a ResultsTable.
valuesFromTextFile(File) - Method in class org.scijava.table.TableLoader
Loads the values of a table stored in a text file as a ResultsTable.
valuesFromTextFile(URL) - Method in class org.scijava.table.TableLoader
Loads the values of a table stored at a URL as a ResultsTable.
ValuesToString() - Constructor for class org.scijava.optional.AbstractOptions.ValuesToString
 
Variable - Class in org.scijava.parsington
A "noun" token representing a variable.
Variable(String) - Constructor for class org.scijava.parsington.Variable
 
vars() - Method in class org.scijava.script.ScriptREPL
Lists variables in the script context.
VarsPane - Class in org.scijava.ui.swing.script
A side pane with information about available languages and variables.
VarsPane(Context, ScriptREPL) - Constructor for class org.scijava.ui.swing.script.VarsPane
 
verbose - Variable in class org.scijava.minimaven.BuildEnvironment
 
verbose - Static variable in class org.scijava.util.CheckSezpoz
Deprecated.
version - Variable in class org.scijava.minimaven.Coordinate
 
version - Variable in class org.scijava.minimaven.VersionPOMHandler
 
Versioned - Interface in org.scijava
An object that knows its version.
VersionPOMHandler - Class in org.scijava.minimaven
TODO
VersionPOMHandler() - Constructor for class org.scijava.minimaven.VersionPOMHandler
 
VersionUtils - Class in org.scijava.util
Useful methods for retrieving versions from JARs and POMs associated with Class objects.
VersionUtils() - Constructor for class org.scijava.util.VersionUtils
 
VERY_HIGH - Static variable in class org.scijava.Priority
Priority for items that strongly prefer to be sorted early.
VERY_HIGH_PRIORITY - Static variable in class org.scijava.Priority
Deprecated.
Use Priority.VERY_HIGH instead.
VERY_LOW - Static variable in class org.scijava.Priority
Priority for items that strongly prefer to be sorted late.
VERY_LOW_PRIORITY - Static variable in class org.scijava.Priority
Deprecated.
Use Priority.VERY_LOW instead.
view(DisplayWindow, Display<?>) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer
 
view(DisplayWindow, Display<?>) - Method in class org.scijava.ui.swing.viewer.EasySwingDisplayViewer
 
view(DisplayWindow, Display<?>) - Method in class org.scijava.ui.swing.viewer.table.SwingTableDisplayViewer
 
view(DisplayWindow, Display<?>) - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayViewer
 
view(DisplayWindow, Display<?>) - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
view(UserInterface, Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer
Begins viewing the given display.
view(DisplayWindow, Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer
Begins viewing the given display.
VIOLET - Static variable in class org.scijava.util.Colors
 
VisualEditorPanel - Class in org.scijava.ui.behaviour.io.gui
 
VisualEditorPanel(InputTriggerConfig) - Constructor for class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
Creates a visual editor for an InputTriggerConfig.
VisualEditorPanel(InputTriggerConfig, Map<Command, String>) - Constructor for class org.scijava.ui.behaviour.io.gui.VisualEditorPanel
Creates a visual editor for an InputTriggerConfig.
VisualEditorPanel.ConfigChangeListener - Interface in org.scijava.ui.behaviour.io.gui
Interface for listeners notified when settings are changed in the visual editor.

W

waitFor(Future<M>) - Method in class org.scijava.module.DefaultModuleService
 
waitFor(Future<M>) - Method in interface org.scijava.module.ModuleService
Blocks until the given module is finished executing.
waitFor(Future<T>) - Method in class org.scijava.run.AbstractCodeRunner
 
waitFor() - Method in class org.scijava.task.DefaultTask
 
waitFor() - Method in interface org.scijava.task.Task
Waits for the task to complete.
walkHistory(String, boolean) - Method in class org.scijava.script.DefaultScriptInterpreter
 
walkHistory(String, boolean) - Method in interface org.scijava.script.ScriptInterpreter
Obtains the next/previous command in the command history.
warn(String) - Method in class org.scijava.app.DefaultStatusService
 
warn(String) - Method in interface org.scijava.app.StatusService
Issues a warning message.
warn(Object) - Method in interface org.scijava.log.Logger
 
warn(Throwable) - Method in interface org.scijava.log.Logger
 
warn(Object, Throwable) - Method in interface org.scijava.log.Logger
 
WARN - Static variable in class org.scijava.log.LogLevel
 
WARN - Static variable in interface org.scijava.log.LogService
Deprecated.
warn - Variable in class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
wasChangedOutside() - Method in class org.scijava.ui.swing.script.EditorPane
 
WatchEvents - Class in org.scijava.ui.swing.commands
Listens for events, displaying results in a text window.
WatchEvents() - Constructor for class org.scijava.ui.swing.commands.WatchEvents
 
WatchEventsFrame - Class in org.scijava.ui.swing.commands
Swing-specific window for event watcher plugin.
WatchEventsFrame(EventHistory, LogService) - Constructor for class org.scijava.ui.swing.commands.WatchEventsFrame
 
WebappJniExtractor - Class in org.scijava.nativelib
JniExtractor suitable for multiple application deployments on the same virtual machine (such as webapps)
WebappJniExtractor(String) - Constructor for class org.scijava.nativelib.WebappJniExtractor
 
WebSearchResult - Class in org.scijava.search.web
This class represents a typical web search result being represented by a name/title of a website, an image (icon), the url of the website and some text from the website as preview of its content.
WebSearchResult(String, String, String) - Constructor for class org.scijava.search.web.WebSearchResult
 
WebSearchResult(String, String, String, String, Map<String, String>) - Constructor for class org.scijava.search.web.WebSearchResult
 
WelcomeEvent - Class in org.scijava.welcome.event
Marker SciJavaEvent indicating the first time an application is run.
WelcomeEvent() - Constructor for class org.scijava.welcome.event.WelcomeEvent
 
WelcomeService - Interface in org.scijava.welcome
Interface for services to display the welcome greeting when the UI is shown for the first time.
WHEAT - Static variable in class org.scijava.util.Colors
 
WHITE - Static variable in class org.scijava.util.Colors
 
WHITESMOKE - Static variable in class org.scijava.util.Colors
 
widget() - Method in class org.scijava.AbstractGateway
 
widget() - Method in interface org.scijava.Gateway
Gets this application context's WidgetService.
WidgetModel - Interface in org.scijava.widget
The backing data model for a particular InputWidget.
widgets - Variable in class org.scijava.widget.AbstractInputPanel
Table of widgets.
WidgetService - Interface in org.scijava.widget
Interface for services that manage available InputWidgets.
WidgetStyle - Class in org.scijava.widget
 
width - Variable in class org.scijava.ui.swing.script.FileFunctions.LengthWarner
 
width - Variable in class org.scijava.ui.swing.script.FileFunctions.TextWrapper
 
width - Variable in class org.scijava.util.IntRect
 
width - Variable in class org.scijava.util.RealRect
 
wildcard() - Static method in class org.scijava.util.Types
Creates a new WildcardType with no upper or lower bounds (i.e., ?).
wildcard(Type, Type) - Static method in class org.scijava.util.Types
Creates a new WildcardType with the given upper and/or lower bound.
wildcard(Type[], Type[]) - Static method in class org.scijava.util.Types
Creates a new WildcardType with the given upper and/or lower bounds.
WIN_DOWN_MASK - Static variable in class org.scijava.ui.behaviour.InputTrigger
 
WinActivatedEvent - Class in org.scijava.display.event.window
An event indicating a display window has been activated.
WinActivatedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinActivatedEvent
 
WinClosedEvent - Class in org.scijava.display.event.window
An event indicating a display window has been closed.
WinClosedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinClosedEvent
 
WinClosingEvent - Class in org.scijava.display.event.window
An event indicating a display window is in the process of closing.
WinClosingEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinClosingEvent
 
WinDeactivatedEvent - Class in org.scijava.display.event.window
An event indicating a display window has been deactivated.
WinDeactivatedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinDeactivatedEvent
 
WinDeiconifiedEvent - Class in org.scijava.display.event.window
An event indicating a display window was deiconified.
WinDeiconifiedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinDeiconifiedEvent
 
WINDOW_HEIGHT - Static variable in class org.scijava.ui.swing.script.TextEditor
 
WINDOW_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
WINDOW_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
WINDOW_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
WINDOW_WIDTH - Static variable in class org.scijava.ui.swing.script.TextEditor
 
windowActivated(WindowEvent) - Method in class org.scijava.ui.awt.AWTWindowEventDispatcher
 
windowClosed(WindowEvent) - Method in class org.scijava.ui.awt.AWTWindowEventDispatcher
 
windowClosing(WindowEvent) - Method in class org.scijava.ui.awt.AWTWindowEventDispatcher
 
windowDeactivated(WindowEvent) - Method in class org.scijava.ui.awt.AWTWindowEventDispatcher
 
windowDeiconified(WindowEvent) - Method in class org.scijava.ui.awt.AWTWindowEventDispatcher
 
windowIconified(WindowEvent) - Method in class org.scijava.ui.awt.AWTWindowEventDispatcher
 
windowOpened(WindowEvent) - Method in class org.scijava.ui.awt.AWTWindowEventDispatcher
 
WindowsPlatform - Class in org.scijava.plugins.platforms.windows
A platform implementation for handling Windows platform issues.
WindowsPlatform() - Constructor for class org.scijava.plugins.platforms.windows.WindowsPlatform
 
WindowsTileVertical - Class in org.scijava.ui.swing.mdi
Arranges the Windows in an MDI environment.
WindowsTileVertical() - Constructor for class org.scijava.ui.swing.mdi.WindowsTileVertical
 
WinEvent - Class in org.scijava.display.event.window
An event indicating something has happened to a display window.
WinEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinEvent
 
WinIconifiedEvent - Class in org.scijava.display.event.window
An event indicating a display window was iconified.
WinIconifiedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinIconifiedEvent
 
WinOpenedEvent - Class in org.scijava.display.event.window
An event indicating a display window has been opened.
WinOpenedEvent(Display<?>, Object) - Constructor for class org.scijava.display.event.window.WinOpenedEvent
 
winPressed() - Method in class org.scijava.ui.behaviour.GlobalKeyEventDispatcher
 
wrap(Map<?, T>, String) - Static method in class org.scijava.table.Tables
Creates a single-column table wrapping a map.
wrap(List<T>, String, List<String>) - Static method in class org.scijava.table.Tables
Creates a single-column table wrapping a list.
wrap(List<? extends Map<?, T>>, List<String>) - Static method in class org.scijava.table.Tables
Creates a table wrapping a list of maps.
WrappedActionMap - Class in org.scijava.ui.behaviour.util
A view of the specified ActionMap that can have its own parent.
WrappedActionMap(ActionMap) - Constructor for class org.scijava.ui.behaviour.util.WrappedActionMap
 
WrappedBehaviourMap - Class in org.scijava.ui.behaviour.util
A view of the specified BehaviourMap that can have its own parent.
WrappedBehaviourMap(BehaviourMap) - Constructor for class org.scijava.ui.behaviour.util.WrappedBehaviourMap
 
WrappedInputMap - Class in org.scijava.ui.behaviour.util
A view of the specified InputMap that can have its own parent.
WrappedInputMap(InputMap) - Constructor for class org.scijava.ui.behaviour.util.WrappedInputMap
 
WrappedInputTriggerMap - Class in org.scijava.ui.behaviour.util
A view of the specified InputTriggerMap that can have its own parent.
WrappedInputTriggerMap(InputTriggerMap) - Constructor for class org.scijava.ui.behaviour.util.WrappedInputTriggerMap
 
wrappedInScrollbars() - Method in class org.scijava.ui.swing.script.EditorPane
 
WrapperPlugin<D> - Interface in org.scijava.plugin
A plugin with a special "has-a" relationship (i.e., composition rather than inheritance) with a single data object of a particular type.
WrapperService<DT,PT extends WrapperPlugin<DT>> - Interface in org.scijava.plugin
A service for managing WrapperPlugins of a particular type.
write(AbstractIndexWriter.StreamFactory) - Method in class org.scijava.annotations.AbstractIndexWriter
 
write(File) - Method in class org.scijava.annotations.DirectoryIndexer
 
write(int) - Method in class org.scijava.console.MultiOutputStream
 
write(byte[], int, int) - Method in class org.scijava.console.MultiOutputStream
 
write(int) - Method in class org.scijava.download.MultiWriteHandle
 
write(byte[], int, int) - Method in class org.scijava.download.MultiWriteHandle
 
write(byte[], int, int) - Method in class org.scijava.io.handle.BytesHandle
 
write(int) - Method in class org.scijava.io.handle.BytesHandle
 
write(byte[]) - Method in interface org.scijava.io.handle.DataHandle
 
write(int) - Method in class org.scijava.io.handle.DataHandleOutputStream
 
write(byte[]) - Method in class org.scijava.io.handle.DataHandleOutputStream
 
write(byte[], int, int) - Method in class org.scijava.io.handle.DataHandleOutputStream
 
write(int) - Method in class org.scijava.io.handle.DummyHandle
 
write(byte[], int, int) - Method in class org.scijava.io.handle.DummyHandle
 
write(byte[]) - Method in class org.scijava.io.handle.FileHandle
 
write(byte[], int, int) - Method in class org.scijava.io.handle.FileHandle
 
write(int) - Method in class org.scijava.io.handle.FileHandle
 
write(int) - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
write(byte[], int, int) - Method in class org.scijava.io.handle.ReadBufferDataHandle
 
write(int) - Method in interface org.scijava.io.handle.StreamHandle
 
write(byte[], int, int) - Method in interface org.scijava.io.handle.StreamHandle
 
write(int) - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
write(byte[], int, int) - Method in class org.scijava.io.handle.WriteBufferDataHandle
 
write(List<InputTriggerDescription>, Writer) - Static method in class org.scijava.ui.behaviour.io.json.JsonConfigIO
 
write(List<InputTriggerDescription>, String) - Static method in class org.scijava.ui.behaviour.io.json.JsonConfigIO
 
write(Iterable<InputTriggerDescription>, Writer) - Static method in class org.scijava.ui.behaviour.io.yaml.YamlConfigIO
Writes the specified InputTriggerDescriptions on the specified writer.
write(Iterable<InputTriggerDescription>, String) - Static method in class org.scijava.ui.behaviour.io.yaml.YamlConfigIO
Writes the specified InputTriggerDescriptions on the specified file.
write(File) - Method in class org.scijava.ui.swing.script.EditorPane
Write the contents of this EditorPane to given file.
write(int) - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
 
write(byte[]) - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
 
write(byte[], int, int) - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
 
write(String) - Method in class org.scijava.ui.swing.script.JTextAreaOutputStream
 
write(int) - Method in class org.scijava.ui.swing.script.JTextAreaWriter
 
write(char[]) - Method in class org.scijava.ui.swing.script.JTextAreaWriter
 
write(char[], int, int) - Method in class org.scijava.ui.swing.script.JTextAreaWriter
 
write(String) - Method in class org.scijava.ui.swing.script.JTextAreaWriter
 
write(File) - Method in class org.scijava.ui.swing.script.TextEditor
 
write(String) - Method in class org.scijava.ui.swing.script.TextEditor
Write a message to the output screen
write(int) - Method in class org.scijava.util.LineOutputStream
Adds a single byte to the current line buffer, or LineOutputStream.flush() the current line if it is a new-line character.
write(byte[]) - Method in class org.scijava.util.LineOutputStream
Adds bytes to the current line buffer.
write(byte[], int, int) - Method in class org.scijava.util.LineOutputStream
Adds bytes to the current line buffer.
writeBoolean(boolean) - Method in interface org.scijava.io.handle.DataHandle
 
writeBoolean(boolean) - Method in class org.scijava.io.handle.FileHandle
 
writeBuffer(DataHandle<Location>) - Method in interface org.scijava.io.handle.DataHandleService
Wraps the provided DataHandle in a write-only buffer for accelerated writing.
WriteBufferDataHandle - Class in org.scijava.io.handle
Wraps a DataHandle and acts as a write buffer.
WriteBufferDataHandle(DataHandle<Location>) - Constructor for class org.scijava.io.handle.WriteBufferDataHandle
Creates a WriteBufferDataHandle that wraps the given DataHandle, the default size for the buffer is used ( bytes).
WriteBufferDataHandle(DataHandle<Location>, int) - Constructor for class org.scijava.io.handle.WriteBufferDataHandle
Creates a WriteBufferDataHandle that wraps the given DataHandle
writeByte(int) - Method in interface org.scijava.io.handle.DataHandle
 
writeByte(int) - Method in class org.scijava.io.handle.FileHandle
 
writeByte(int) - Method in interface org.scijava.io.handle.StreamHandle
 
writeBytes(String) - Method in interface org.scijava.io.handle.DataHandle
 
writeBytes(String) - Method in class org.scijava.io.handle.FileHandle
 
writeChar(int) - Method in interface org.scijava.io.handle.DataHandle
 
writeChars(String) - Method in interface org.scijava.io.handle.DataHandle
 
writeChars(String) - Method in class org.scijava.io.handle.FileHandle
 
writeColumnHeaders() - Method in class org.scijava.table.io.TableIOOptions.Values
 
writeColumnHeaders(boolean) - Method in class org.scijava.table.io.TableIOOptions
 
writeDouble(double) - Method in interface org.scijava.io.handle.DataHandle
 
writeError(String) - Method in class org.scijava.ui.swing.script.TextEditor
 
writeFile(File, byte[]) - Static method in class org.scijava.util.FileUtils
Writes the given byte array to the specified file.
writeFloat(float) - Method in interface org.scijava.io.handle.DataHandle
 
writeHistory() - Method in class org.scijava.script.DefaultScriptInterpreter
 
writeHistory() - Method in interface org.scijava.script.ScriptInterpreter
Persists the history of the current script interpreter.
writeInt(int) - Method in interface org.scijava.io.handle.DataHandle
 
writeLine(String) - Method in interface org.scijava.io.handle.DataHandle
Writes the provided string, followed by a newline character.
writeLong(long) - Method in interface org.scijava.io.handle.DataHandle
 
writeMap(PrintStream, Object...) - Method in class org.scijava.annotations.AbstractIndexWriter
 
writeOnlyException() - Static method in class org.scijava.io.handle.DataHandles
 
writer - Variable in class org.scijava.script.AbstractScriptContext
 
writeRowHeaders() - Method in class org.scijava.table.io.TableIOOptions.Values
 
writeRowHeaders(boolean) - Method in class org.scijava.table.io.TableIOOptions
 
writeShort(int) - Method in interface org.scijava.io.handle.DataHandle
 
writeState(DataOutputStream) - Method in class org.scijava.util.MersenneTwisterFast
Writes the entire state of the MersenneTwister RNG to the stream
writeUTF(String) - Method in interface org.scijava.io.handle.DataHandle
 
writeUTF(String, DataOutput) - Static method in class org.scijava.io.handle.DataHandles
Writes a string to the specified DataOutput using modified UTF-8 encoding in a machine-independent manner.
writeUTF(String) - Method in class org.scijava.io.handle.FileHandle
 
writeXMLFile(Document, File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.

X

x - Variable in class org.scijava.util.IntCoords
 
x - Variable in class org.scijava.util.IntRect
 
x - Variable in class org.scijava.util.RealCoords
 
x - Variable in class org.scijava.util.RealRect
 
XML - Class in org.scijava.util
Helper class for working with XML documents.
XML(File) - Constructor for class org.scijava.util.XML
Parses XML from the given file.
XML(URL) - Constructor for class org.scijava.util.XML
Parses XML from the given URL.
XML(InputStream) - Constructor for class org.scijava.util.XML
Parses XML from the given input stream.
XML(String) - Constructor for class org.scijava.util.XML
Parses XML from the given string.
XML(Document) - Constructor for class org.scijava.util.XML
Creates an XML object for an existing document.
XML(String, Document) - Constructor for class org.scijava.util.XML
Creates an XML object for an existing document.
xpath(String) - Method in class org.scijava.util.XML
Obtains the nodes identified by the given XPath expression.

Y

y - Variable in class org.scijava.util.IntCoords
 
y - Variable in class org.scijava.util.IntRect
 
y - Variable in class org.scijava.util.RealCoords
 
y - Variable in class org.scijava.util.RealRect
 
YamlConfigIO - Class in org.scijava.ui.behaviour.io.yaml
Facilities to serialize / de-serialize InputTriggerDescriptions to a YAML file.
YELLOW - Static variable in class org.scijava.util.Colors
 
YELLOWGREEN - Static variable in class org.scijava.util.Colors
 
yybegin(int) - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Enters a new lexical state
yybegin(int) - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Enters a new lexical state
yycharat(int) - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Returns the character at position pos from the matched text.
yycharat(int) - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Returns the character at position pos from the matched text.
yyclose() - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Closes the input stream.
yyclose() - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Closes the input stream.
YYEOF - Static variable in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
This character denotes the end of file
YYEOF - Static variable in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
This character denotes the end of file
YYINITIAL - Static variable in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
 
YYINITIAL - Static variable in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
 
yylength() - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Returns the length of the matched text region.
yylength() - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Returns the length of the matched text region.
yylex() - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Resumes scanning until the next regular expression is matched, the end of input is encountered or an I/O-Error occurs.
yylex() - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Resumes scanning until the next regular expression is matched, the end of input is encountered or an I/O-Error occurs.
yypushback(int) - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Pushes the specified amount of characters back into the input stream.
yypushback(int) - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Pushes the specified amount of characters back into the input stream.
yyreset(Reader) - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Resets the scanner to read from a new input stream.
yyreset(Reader) - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Resets the scanner to read from a new input stream.
yystate() - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Returns the current lexical state.
yytext() - Method in class org.scijava.ui.swing.script.highliters.ImageJMacroTokenMaker
Returns the text matched by the current regular expression.
yytext() - Method in class org.scijava.ui.swing.script.highliters.MatlabTokenMaker
Returns the text matched by the current regular expression.

Z

zapGremlins() - Method in class org.scijava.ui.swing.script.EditorPane
Adapted from ij.plugin.frame.Editor.
zapGremlins() - Method in class org.scijava.ui.swing.script.TextEditor
Removes invalid characters, shows a dialog.
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