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A

about() - Method in class org.scijava.app.AbstractApp
 
about() - Method in interface org.scijava.app.App
Displays information about the application.
about() - Method in interface org.scijava.platform.AppEventService
Deprecated.
Use App.about() instead.
about() - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
 
AbstractApp - Class in org.scijava.app
Abstract superclass of App implementations.
AbstractApp() - Constructor for class org.scijava.app.AbstractApp
 
AbstractAWTMenuCreator<T> - Class in org.scijava.ui.awt.menu
Populates an AWT menu structure with menu items from a ShadowMenu.
AbstractAWTMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
AbstractBasicDetails - Class in org.scijava
Abstract superclass of BasicDetails implementations.
AbstractBasicDetails() - Constructor for class org.scijava.AbstractBasicDetails
 
AbstractCodeRunner - Class in org.scijava.run
Abstract superclass of CodeRunner implementations.
AbstractCodeRunner() - Constructor for class org.scijava.run.AbstractCodeRunner
 
AbstractConsoleArgument - Class in org.scijava.console
Abstract superclass of ConsoleArgument implementations.
AbstractConsoleArgument() - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsoleArgument(String...) - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsoleArgument(int, String...) - Constructor for class org.scijava.console.AbstractConsoleArgument
 
AbstractConsolePane<C> - Class in org.scijava.ui.console
Abstract base class of ConsolePane implementations.
AbstractConsolePane(Context) - Constructor for class org.scijava.ui.console.AbstractConsolePane
 
AbstractContextual - Class in org.scijava
Abstract base class for Contextual objects.
AbstractContextual() - Constructor for class org.scijava.AbstractContextual
 
AbstractConverter<I,O> - Class in org.scijava.convert
Abstract superclass for Converter plugins.
AbstractConverter() - Constructor for class org.scijava.convert.AbstractConverter
 
AbstractConvertService - Class in org.scijava.convert
Abstract superclass for ConvertService implementations.
AbstractConvertService() - Constructor for class org.scijava.convert.AbstractConvertService
 
AbstractDataHandle<L extends Location> - Class in org.scijava.io
Abstract base class for DataHandle plugins.
AbstractDataHandle() - Constructor for class org.scijava.io.AbstractDataHandle
 
AbstractDisplay<T> - Class in org.scijava.display
Abstract superclass of Display implementations.
AbstractDisplay(Class<T>) - Constructor for class org.scijava.display.AbstractDisplay
 
AbstractDisplayViewer<T> - Class in org.scijava.ui.viewer
The AbstractDisplayViewer provides some basic generic implementations for a DisplayViewer such as storing and providing the display, window and panel for a DisplayViewer.
AbstractDisplayViewer() - Constructor for class org.scijava.ui.viewer.AbstractDisplayViewer
 
AbstractDragAndDropData - Class in org.scijava.ui.dnd
Abstract superclass for DragAndDropData implementations.
AbstractDragAndDropData() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropData
 
AbstractDragAndDropHandler<D> - Class in org.scijava.ui.dnd
Abstract superclass for DragAndDropHandlers.
AbstractDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
AbstractEvaluator - Class in org.scijava.parse.eval
Base class for Evaluator implementations.
AbstractEvaluator() - Constructor for class org.scijava.parse.eval.AbstractEvaluator
 
AbstractEvaluator(ExpressionParser) - Constructor for class org.scijava.parse.eval.AbstractEvaluator
 
AbstractGateway - Class in org.scijava
Abstract superclass for Gateway implementations.
AbstractGateway() - Constructor for class org.scijava.AbstractGateway
 
AbstractGateway(String, Context) - Constructor for class org.scijava.AbstractGateway
 
AbstractHandlerPlugin<D> - Class in org.scijava.plugin
Abstract base class for HandlerPlugin implementations.
AbstractHandlerPlugin() - Constructor for class org.scijava.plugin.AbstractHandlerPlugin
 
AbstractHandlerService<DT,PT extends HandlerPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for HandlerServices.
AbstractHandlerService() - Constructor for class org.scijava.plugin.AbstractHandlerService
 
AbstractIndexWriter - Class in org.scijava.annotations
Writes annotations as JSON-formatted files.
AbstractIndexWriter() - Constructor for class org.scijava.annotations.AbstractIndexWriter
 
AbstractIndexWriter.StreamFactory - Interface in org.scijava.annotations
 
AbstractInputHarvester<P,W> - Class in org.scijava.widget
Abstract superclass for InputHarvesters.
AbstractInputHarvester() - Constructor for class org.scijava.widget.AbstractInputHarvester
 
AbstractInputHarvesterPlugin<P,W> - Class in org.scijava.ui
AbstractInputHarvesterPlugin is an InputHarvester that implements the PreprocessorPlugin interface.
AbstractInputHarvesterPlugin() - Constructor for class org.scijava.ui.AbstractInputHarvesterPlugin
 
AbstractInputPanel<P,W> - Class in org.scijava.widget
Abstract superclass of UI-specific InputPanel implementations.
AbstractInputPanel() - Constructor for class org.scijava.widget.AbstractInputPanel
 
AbstractInputWidget<T,W> - Class in org.scijava.widget
Base class for input widgets.
AbstractInputWidget() - Constructor for class org.scijava.widget.AbstractInputWidget
 
AbstractIOPlugin<D> - Class in org.scijava.io
Abstract base class for IOPlugins.
AbstractIOPlugin() - Constructor for class org.scijava.io.AbstractIOPlugin
 
AbstractLevelsFilter - Class in org.scijava.config.logback
Filters log messages, keeping only certain levels.
AbstractLevelsFilter(Level...) - Constructor for class org.scijava.config.logback.AbstractLevelsFilter
 
AbstractLocation - Class in org.scijava.io
Abstract base class for Location implementations.
AbstractLocation() - Constructor for class org.scijava.io.AbstractLocation
 
AbstractLogService - Class in org.scijava.log
Base class for LogService implementationst.
AbstractLogService() - Constructor for class org.scijava.log.AbstractLogService
 
AbstractMenuCreator<T,M> - Class in org.scijava.menu
Abstract helper class for generating a menu structure.
AbstractMenuCreator() - Constructor for class org.scijava.menu.AbstractMenuCreator
 
AbstractModule - Class in org.scijava.module
Abstract superclass of Module implementations.
AbstractModule() - Constructor for class org.scijava.module.AbstractModule
 
AbstractModuleInfo - Class in org.scijava.module
Abstract superclass of ModuleInfo implementation.
AbstractModuleInfo() - Constructor for class org.scijava.module.AbstractModuleInfo
 
AbstractModuleItem<T> - Class in org.scijava.module
Abstract superclass of ModuleItem implementations.
AbstractModuleItem(ModuleInfo) - Constructor for class org.scijava.module.AbstractModuleItem
 
AbstractPlatform - Class in org.scijava.platform
Abstract superclass of platform implementations.
AbstractPlatform() - Constructor for class org.scijava.platform.AbstractPlatform
 
AbstractPOMHandler - Class in org.scijava.minimaven
Abstract base class for POM SAX handlers.
AbstractPOMHandler() - Constructor for class org.scijava.minimaven.AbstractPOMHandler
 
AbstractPostprocessorPlugin - Class in org.scijava.module.process
Abstract base class for plugin postprocessors.
AbstractPostprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPostprocessorPlugin
 
AbstractPrefService - Class in org.scijava.prefs
Abstract PrefService implementation.
AbstractPrefService() - Constructor for class org.scijava.prefs.AbstractPrefService
 
AbstractPreprocessorPlugin - Class in org.scijava.module.process
Abstract base class for plugin preprocessors.
AbstractPreprocessorPlugin() - Constructor for class org.scijava.module.process.AbstractPreprocessorPlugin
 
AbstractPrimitiveArray<ArrayType,BaseType> - Class in org.scijava.util
Abstract base class for primitive-type extensible arrays.
AbstractPrimitiveArray(Class<BaseType>) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by a fixed-size array.
AbstractPrimitiveArray(Class<BaseType>, int) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by a fixed-size array.
AbstractPrimitiveArray(Class<BaseType>, ArrayType) - Constructor for class org.scijava.util.AbstractPrimitiveArray
Constructs an extensible array of primitive type elements, backed by the given fixed-size array.
AbstractPTService<PT extends SciJavaPlugin> - Class in org.scijava.plugin
Abstract base class for PTServices.
AbstractPTService() - Constructor for class org.scijava.plugin.AbstractPTService
 
AbstractRichPlugin - Class in org.scijava.plugin
Abstract base class for RichPlugin implementations.
AbstractRichPlugin() - Constructor for class org.scijava.plugin.AbstractRichPlugin
 
AbstractScriptContext - Class in org.scijava.script
A minimal implementation of ScriptContext for use in the AbstractScriptEngine.
AbstractScriptContext() - Constructor for class org.scijava.script.AbstractScriptContext
 
AbstractScriptEngine - Class in org.scijava.script
This class implements dummy versions for ScriptEngine's methods that are not needed by the SciJava scripting framework.
AbstractScriptEngine() - Constructor for class org.scijava.script.AbstractScriptEngine
 
AbstractScriptHeader - Class in org.scijava.script
Abstract superclass for ScriptHeader implementations.
AbstractScriptHeader() - Constructor for class org.scijava.script.AbstractScriptHeader
 
AbstractScriptLanguage - Class in org.scijava.script
Abstract superclass for ScriptLanguage implementations.
AbstractScriptLanguage() - Constructor for class org.scijava.script.AbstractScriptLanguage
 
AbstractService - Class in org.scijava.service
Abstract superclass of Service implementations.
AbstractService() - Constructor for class org.scijava.service.AbstractService
 
AbstractSingleInputPreprocessor - Class in org.scijava.module.process
Abstract superclass for PreprocessorPlugin implementations that populate singleton inputs.
AbstractSingleInputPreprocessor() - Constructor for class org.scijava.module.process.AbstractSingleInputPreprocessor
 
AbstractSingletonService<PT extends SingletonPlugin> - Class in org.scijava.plugin
Abstract base class for SingletonServices.
AbstractSingletonService() - Constructor for class org.scijava.plugin.AbstractSingletonService
 
AbstractStackEvaluator - Class in org.scijava.parse.eval
Base class for StackEvaluator implementations.
AbstractStackEvaluator() - Constructor for class org.scijava.parse.eval.AbstractStackEvaluator
 
AbstractStackEvaluator(ExpressionParser) - Constructor for class org.scijava.parse.eval.AbstractStackEvaluator
 
AbstractStandardStackEvaluator - Class in org.scijava.parse.eval
Base class for stack-based evaluators which support the standard operators.
AbstractStandardStackEvaluator() - Constructor for class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
AbstractStandardStackEvaluator(ExpressionParser) - Constructor for class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
AbstractSwingMenuCreator<T> - Class in org.scijava.ui.swing.menu
Populates a Swing menu structure with menu items from a ShadowMenu.
AbstractSwingMenuCreator() - Constructor for class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
AbstractSwingUI - Class in org.scijava.ui.swing
Abstract superclass for Swing-based user interfaces.
AbstractSwingUI() - Constructor for class org.scijava.ui.swing.AbstractSwingUI
 
AbstractTextDisplayViewer - Class in org.scijava.ui.viewer.text
Implements the UI-independent elements of a text viewer.
AbstractTextDisplayViewer() - Constructor for class org.scijava.ui.viewer.text.AbstractTextDisplayViewer
 
AbstractTextFormat - Class in org.scijava.text
Abstract superclass of TextFormat implementations.
AbstractTextFormat() - Constructor for class org.scijava.text.AbstractTextFormat
 
AbstractTool - Class in org.scijava.tool
Abstract base class for Tool implementations.
AbstractTool() - Constructor for class org.scijava.tool.AbstractTool
 
AbstractTypedPlugin<D> - Class in org.scijava.plugin
Abstract base class for TypedPlugins.
AbstractTypedPlugin() - Constructor for class org.scijava.plugin.AbstractTypedPlugin
 
AbstractTypedService<DT,PT extends TypedPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for TypedServices.
AbstractTypedService() - Constructor for class org.scijava.plugin.AbstractTypedService
 
AbstractUIDetails - Class in org.scijava
Abstract superclass of UIDetails implementations.
AbstractUIDetails() - Constructor for class org.scijava.AbstractUIDetails
 
AbstractUIInputWidget<T,W> - Class in org.scijava.ui
Abstract superclass of InputWidget implementations that belong to a specific UI.
AbstractUIInputWidget() - Constructor for class org.scijava.ui.AbstractUIInputWidget
 
AbstractUserInterface - Class in org.scijava.ui
Abstract superclass for UserInterface implementations.
AbstractUserInterface() - Constructor for class org.scijava.ui.AbstractUserInterface
 
AbstractWrapperPlugin<D> - Class in org.scijava.plugin
Abstract base class for WrapperPlugins.
AbstractWrapperPlugin() - Constructor for class org.scijava.plugin.AbstractWrapperPlugin
 
AbstractWrapperService<DT,PT extends WrapperPlugin<DT>> - Class in org.scijava.plugin
Abstract base class for WrapperServices.
AbstractWrapperService() - Constructor for class org.scijava.plugin.AbstractWrapperService
 
Accelerator - Class in org.scijava.input
A keyboard shortcut, consisting of a KeyCode plus InputModifiers.
Accelerator(KeyCode, InputModifiers) - Constructor for class org.scijava.input.Accelerator
 
acquireDrawer(Tool) - Method in interface org.scijava.tool.IconService
 
acquireDrawer(Tool) - Method in class org.scijava.ui.swing.SwingIconService
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
actionPerformed(ActionEvent) - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
activate() - Method in interface org.scijava.tool.Tool
Informs the tool that it is now active.
activate() - Method in interface org.scijava.ui.ApplicationFrame
Activate the application frame, bringing it to the front.
activate() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
activate() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
ACTIVE_BORDER - Static variable in class org.scijava.ui.swing.SwingToolBar
 
ActiveDisplayPreprocessor - Class in org.scijava.display
Assigns the active Display when there is one single unresolved Display parameter.
ActiveDisplayPreprocessor() - Constructor for class org.scijava.display.ActiveDisplayPreprocessor
 
adapt(Object) - Method in class org.scijava.annotations.AbstractIndexWriter
 
adapt(A) - Method in class org.scijava.annotations.AbstractIndexWriter
 
AdaptedScriptEngine - Class in org.scijava.script
Abstract superclass for ScriptEngine implementations which adapt an existing ScriptEngine.
AdaptedScriptEngine(ScriptEngine) - Constructor for class org.scijava.script.AdaptedScriptEngine
 
AdaptedScriptLanguage - Class in org.scijava.script
Abstract superclass for ScriptLanguage implementations which adapt an existing ScriptEngineFactory.
AdaptedScriptLanguage(ScriptEngineFactory) - Constructor for class org.scijava.script.AdaptedScriptLanguage
Creates a new AdaptedScriptLanguage wrapping the given ScriptEngineFactory.
AdaptedScriptLanguage(String) - Constructor for class org.scijava.script.AdaptedScriptLanguage
Creates a new AdaptedScriptLanguage wrapping the ScriptEngineFactory with the given name.
add(Map<String, Object>, String, String) - Method in class org.scijava.annotations.AbstractIndexWriter
 
add(A, String) - Method in class org.scijava.annotations.DirectoryIndexer
 
add(int, T) - Method in class org.scijava.display.AbstractDisplay
 
add(T) - Method in class org.scijava.display.AbstractDisplay
 
add(String) - Method in class org.scijava.io.DefaultRecentFileService
 
add(String) - Method in interface org.scijava.io.RecentFileService
Adds or refreshes a path on the list of recent files.
add(ModuleInfo) - Method in class org.scijava.menu.ShadowMenu
Adds the given module to the menu structure.
add(String) - Method in class org.scijava.minimaven.JarClassLoader
 
add(E) - Method in class org.scijava.object.ObjectIndex
 
add(E, boolean) - Method in class org.scijava.object.ObjectIndex
Adds the object to all compatible type lists.
add(E, Class<?>, boolean) - Method in class org.scijava.object.ObjectIndex
Adds an object to type lists beneath the given type hierarchy.
add(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(String, String) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(int, int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(long, long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(float, float) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(double, double) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(BigInteger, BigInteger) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(BigDecimal, BigDecimal) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
add(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.ADD operator.
ADD - Static variable in class org.scijava.parse.Operators
 
add(ScriptEngineFactory, boolean) - Method in class org.scijava.script.ScriptLanguageIndex
 
add(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex
 
add(int, BaseType) - Method in class org.scijava.util.AbstractPrimitiveArray
 
add(int, Boolean) - Method in class org.scijava.util.BoolArray
 
add(int, Byte) - Method in class org.scijava.util.ByteArray
 
add(int, Character) - Method in class org.scijava.util.CharArray
 
add(int, Double) - Method in class org.scijava.util.DoubleArray
 
add(int, Float) - Method in class org.scijava.util.FloatArray
 
add(int, Integer) - Method in class org.scijava.util.IntArray
 
add(T) - Method in class org.scijava.util.LastRecentlyUsed
Add a new newest entry.
add(int, Long) - Method in class org.scijava.util.LongArray
 
add(int, E) - Method in class org.scijava.util.ObjectArray
 
add(int, Short) - Method in class org.scijava.util.ShortArray
 
ADD_ASSIGN - Static variable in class org.scijava.parse.Operators
 
addAlias(String, Class<?>) - Method in class org.scijava.script.DefaultScriptService
 
addAlias(Class<?>) - Method in interface org.scijava.script.ScriptService
TODO
addAlias(String, Class<?>) - Method in interface org.scijava.script.ScriptService
TODO
addAll(int, Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay
 
addAll(Collection<? extends T>) - Method in class org.scijava.display.AbstractDisplay
 
addAll(Collection<? extends ModuleInfo>) - Method in class org.scijava.menu.ShadowMenu
Adds the given modules to the menu structure.
addAll(Collection<? extends E>) - Method in class org.scijava.object.ObjectIndex
 
addAll(Collection<? extends E>) - Method in class org.scijava.object.SortedObjectIndex
 
addAll(int, Collection<? extends Boolean>) - Method in class org.scijava.util.BoolArray
 
addAll(int, Collection<? extends Byte>) - Method in class org.scijava.util.ByteArray
 
addAll(int, Collection<? extends Character>) - Method in class org.scijava.util.CharArray
 
addAll(int, Collection<? extends Double>) - Method in class org.scijava.util.DoubleArray
 
addAll(int, Collection<? extends Float>) - Method in class org.scijava.util.FloatArray
 
addAll(int, Collection<? extends Integer>) - Method in class org.scijava.util.IntArray
 
addAll(Collection<? extends T>) - Method in class org.scijava.util.LastRecentlyUsed
 
addAll(int, Collection<? extends Long>) - Method in class org.scijava.util.LongArray
 
addAll(int, Collection<? extends E>) - Method in class org.scijava.util.ObjectArray
 
addAll(int, Collection<? extends Short>) - Method in class org.scijava.util.ShortArray
 
addArgDelimiter() - Method in interface org.scijava.script.CodeGenerator
Adds delimiter character between arguments (typically a ',').
addArgDelimiter() - Method in class org.scijava.script.CodeGeneratorJava
 
addArgument(ParameterObject) - Method in interface org.scijava.script.CodeGenerator
 
addArgument(ParameterObject) - Method in class org.scijava.script.CodeGeneratorJava
 
addAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
addAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.ADD_ASSIGN operator.
addChild(MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
addDisplayViewer(DisplayViewer<?>) - Method in class org.scijava.ui.DefaultUIService
 
addDisplayViewer(DisplayViewer<?>) - Method in interface org.scijava.ui.UIService
Registers the given viewer with the service.
addEventDispatcher(InternalFrameEventDispatcher) - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
addEventDispatcher(AWTInputEventDispatcher) - Method in class org.scijava.ui.swing.SwingStatusBar
 
addHotKey(int, JComponent, String, Action) - Static method in class org.scijava.ui.swing.StaticSwingUtils
Adds a control hot key to the containing window of a component.
addInput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
addInput(String, Class<T>) - Method in interface org.scijava.module.MutableModule
Adds an input to the list.
addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule
Adds an input to the list.
addInput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo
Adds an input to the list.
addLater(LazyObjects<? extends E>) - Method in class org.scijava.object.ObjectIndex
Registers objects which will be created lazily as needed.
addLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addLeafToMenu(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addLeafToMenu(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addLeafToTop(ShadowMenu, MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addLeafToTop(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addLeafToTop(ShadowMenu, PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addLeafToTop(ShadowMenu, JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addLeafToTop(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addLeafToTop(ShadowMenu, JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addListener(EventHistoryListener) - Method in class org.scijava.event.DefaultEventHistory
 
addListener(EventHistoryListener) - Method in interface org.scijava.event.EventHistory
Adds an event history listener.
addMain(String, String...) - Method in class org.scijava.main.DefaultMainService
 
addMain(String, String...) - Method in interface org.scijava.main.MainService
Registers a main class to be executed by MainService.execMains().
addModule(String) - Method in class org.scijava.minimaven.MavenProject
 
addModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService
 
addModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService
Manually registers a module with the module service.
addModuleCalled(String) - Method in interface org.scijava.script.CodeGenerator
 
addModuleCalled(String) - Method in class org.scijava.script.CodeGeneratorJava
 
addModules(Collection<? extends ModuleInfo>) - Method in class org.scijava.module.DefaultModuleService
 
addModules(Collection<? extends ModuleInfo>) - Method in interface org.scijava.module.ModuleService
Manually registers a list of modules with the module service.
addMultiProjectRoot(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
addNonLeafToMenu(ShadowMenu, M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addNonLeafToMenu(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addNonLeafToMenu(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addNonLeafToTop(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addNonLeafToTop(ShadowMenu, MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addNonLeafToTop(ShadowMenu, Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addNonLeafToTop(ShadowMenu, PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addNonLeafToTop(ShadowMenu, JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addNonLeafToTop(ShadowMenu, JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addNonLeafToTop(ShadowMenu, JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addObject(Object) - Method in class org.scijava.object.DefaultObjectService
 
addObject(Object) - Method in interface org.scijava.object.ObjectService
Registers an object with the object service.
addOutput(ModuleItem<?>) - Method in class org.scijava.module.DefaultMutableModuleInfo
 
addOutput(String, Class<T>) - Method in interface org.scijava.module.MutableModule
Adds an output to the list.
addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModule
Adds an output to the list.
addOutput(ModuleItem<?>) - Method in interface org.scijava.module.MutableModuleInfo
Adds an output to the list.
addOutputListener(OutputListener) - Method in interface org.scijava.console.ConsoleService
Adds a listener for output sent to stdout or stderr.
addOutputListener(OutputListener) - Method in class org.scijava.console.DefaultConsoleService
 
addOutputStream(OutputStream) - Method in class org.scijava.console.MultiOutputStream
Adds an output stream to those receiving this stream's output.
addParameter(String, Class<?>, Object) - Method in class org.scijava.script.InvocationObject
 
addPlugin(PluginInfo<?>) - Method in class org.scijava.plugin.DefaultPluginService
 
addPlugin(PluginInfo<?>) - Method in interface org.scijava.plugin.PluginService
Manually registers a plugin with the plugin service.
addPlugins(Collection<T>) - Method in class org.scijava.plugin.DefaultPluginService
 
addPlugins(Collection<T>) - Method in interface org.scijava.plugin.PluginService
Manually registers plugins with the plugin service.
addPropertyChangeListener(PropertyChangeListener) - Method in interface org.scijava.ui.Arrangeable
 
addRecursively(List<String>, File, String, File, String, boolean) - Method in class org.scijava.minimaven.MavenProject
 
addScriptDirectory(File) - Method in class org.scijava.script.DefaultScriptService
 
addScriptDirectory(File, MenuPath) - Method in class org.scijava.script.DefaultScriptService
 
addScriptDirectory(File) - Method in interface org.scijava.script.ScriptService
Adds a base directory to scan for scripts.
addScriptDirectory(File, MenuPath) - Method in interface org.scijava.script.ScriptService
Adds a base directory to scan for scripts, placing discovered scripts beneath the given menu path prefix.
addSeparatorToMenu(M) - Method in class org.scijava.menu.AbstractMenuCreator
 
addSeparatorToMenu(Menu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
addSeparatorToMenu(JMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
addSeparatorToTop(T) - Method in class org.scijava.menu.AbstractMenuCreator
 
addSeparatorToTop(MenuBar) - Method in class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
addSeparatorToTop(Menu) - Method in class org.scijava.ui.awt.menu.AWTMenuCreator
 
addSeparatorToTop(PopupMenu) - Method in class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
addSeparatorToTop(JMenuBar) - Method in class org.scijava.ui.swing.menu.SwingJMenuBarCreator
 
addSeparatorToTop(JMenu) - Method in class org.scijava.ui.swing.menu.SwingJMenuCreator
 
addSeparatorToTop(JPopupMenu) - Method in class org.scijava.ui.swing.menu.SwingJPopupMenuCreator
 
addTiming(Object) - Method in class org.scijava.util.Timing
 
addTiming(long, Object) - Method in class org.scijava.util.Timing
 
addToEnd(T) - Method in class org.scijava.util.LastRecentlyUsed
Add a new oldest entry.
addToJarRecursively(JarOutputStream, File, String) - Method in class org.scijava.minimaven.MavenProject
 
addToList(E, List<E>, boolean) - Method in class org.scijava.object.ObjectIndex
 
addToList(E, List<E>, boolean) - Method in class org.scijava.object.SortedObjectIndex
 
addUI(UserInterface) - Method in class org.scijava.ui.DefaultUIService
 
addUI(String, UserInterface) - Method in class org.scijava.ui.DefaultUIService
 
addUI(UserInterface) - Method in interface org.scijava.ui.UIService
Adds the given UI to those managed by the service.
addUI(String, UserInterface) - Method in interface org.scijava.ui.UIService
Adds the given UI to those managed by the service.
addValue(boolean) - Method in class org.scijava.util.BoolArray
 
addValue(int, boolean) - Method in class org.scijava.util.BoolArray
 
addValue(byte) - Method in class org.scijava.util.ByteArray
 
addValue(int, byte) - Method in class org.scijava.util.ByteArray
 
addValue(char) - Method in class org.scijava.util.CharArray
 
addValue(int, char) - Method in class org.scijava.util.CharArray
 
addValue(double) - Method in class org.scijava.util.DoubleArray
 
addValue(int, double) - Method in class org.scijava.util.DoubleArray
 
addValue(float) - Method in class org.scijava.util.FloatArray
 
addValue(int, float) - Method in class org.scijava.util.FloatArray
 
addValue(int) - Method in class org.scijava.util.IntArray
 
addValue(int, int) - Method in class org.scijava.util.IntArray
 
addValue(long) - Method in class org.scijava.util.LongArray
 
addValue(int, long) - Method in class org.scijava.util.LongArray
 
addValue(E) - Method in class org.scijava.util.ObjectArray
 
addValue(int, E) - Method in class org.scijava.util.ObjectArray
 
addValue(short) - Method in class org.scijava.util.ShortArray
 
addValue(int, short) - Method in class org.scijava.util.ShortArray
 
addWidget(InputWidget<?, Panel>) - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
addWidget(InputWidget<?, JPanel>) - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
addWidget(InputWidget<?, W>) - Method in class org.scijava.widget.AbstractInputPanel
 
addWidget(InputWidget<?, W>) - Method in interface org.scijava.widget.InputPanel
Adds a widget to the panel.
adjustmentValueChanged(AdjustmentEvent) - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
adjustmentValueChanged(AdjustmentEvent) - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
ALICEBLUE - Static variable in class org.scijava.util.Colors
 
allocate(long...) - Static method in class org.scijava.util.ArrayUtils
Allocates a 1-dimensional byte array matching the product of the given sizes.
ANALYZE_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
ANALYZE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
ANALYZE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
AND_ASSIGN - Static variable in class org.scijava.parse.Operators
 
andAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
andAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.AND_ASSIGN operator.
annotation() - Method in class org.scijava.annotations.IndexItem
Obtains the annotation values.
AnnotationCombiner - Class in org.scijava.annotations
Combines annotation indexes from all JAR files on the classpath.
AnnotationCombiner() - Constructor for class org.scijava.annotations.AnnotationCombiner
 
AnnotationProcessor - Class in org.scijava.annotations
The annotation processor for use with Java 6 and above.
AnnotationProcessor() - Constructor for class org.scijava.annotations.AnnotationProcessor
 
ANTIQUEWHITE - Static variable in class org.scijava.util.Colors
 
app() - Method in class org.scijava.AbstractGateway
 
App - Interface in org.scijava.app
Metadata about a SciJava-based application, used by the AppService.
app() - Method in interface org.scijava.Gateway
Gets this application context's AppService.
AppAboutEvent - Class in org.scijava.platform.event
An event sent when the application is asked to open its about window.
AppAboutEvent() - Constructor for class org.scijava.platform.event.AppAboutEvent
 
append(String) - Method in class org.scijava.display.DefaultTextDisplay
 
append(String) - Method in interface org.scijava.display.TextDisplay
Add a line to the display.
append(StringBuilder, String) - Method in class org.scijava.minimaven.MavenProject
 
append(OutputEvent) - Method in interface org.scijava.ui.console.ConsolePane
Appends the given output to the console.
append(EventDetails) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Appends the given event details to the text pane.
append(String) - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Appends the given HTML text string to the text pane.
append(OutputEvent) - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
append(String) - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
append(String) - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
append(String) - Method in class org.scijava.util.StringMaker
 
append(String, Object) - Method in class org.scijava.util.StringMaker
 
append(String, Object, Object) - Method in class org.scijava.util.StringMaker
 
appendContents(Collection<URL>, URL) - Static method in class org.scijava.util.FileUtils
Recursively adds contents from the referenced directory to an existing collection.
appendContents(Collection<URL>, URL, boolean, boolean) - Static method in class org.scijava.util.FileUtils
Add contents from the referenced directory to an existing collection.
appEvent() - Method in class org.scijava.AbstractGateway
 
appEvent() - Method in interface org.scijava.Gateway
Gets this application context's AppEventService.
AppEventService - Interface in org.scijava.platform
Deprecated.
Use AppService and App instead.
AppFocusEvent - Class in org.scijava.platform.event
An event sent when the application has become the foreground app, or when it has resigned being the foreground app.
AppFocusEvent(boolean) - Constructor for class org.scijava.platform.event.AppFocusEvent
 
appHidden(AppHiddenEvent) - Method in class org.scijava.plugins.platforms.osx.OSXAppEventDispatcher
 
APPLICATION_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin
Deprecated.
APPLICATION_MENU_ROOT - Static variable in interface org.scijava.UIDetails
The default, application-level menu root.
ApplicationEvent - Class in org.scijava.platform.event
An event indicating an application-level occurrence.
ApplicationEvent() - Constructor for class org.scijava.platform.event.ApplicationEvent
 
ApplicationFrame - Interface in org.scijava.ui
Common interface for top-level application frames.
AppMenusCreatedEvent - Class in org.scijava.platform.event
An event sent when the application has created and populated its menus.
AppMenusCreatedEvent(Object) - Constructor for class org.scijava.platform.event.AppMenusCreatedEvent
 
appMovedToBackground(AppForegroundEvent) - Method in class org.scijava.plugins.platforms.osx.OSXAppEventDispatcher
 
AppOpenFilesEvent - Class in org.scijava.platform.event
An event sent when the application is asked to re-open itself.
AppOpenFilesEvent(List<File>) - Constructor for class org.scijava.platform.event.AppOpenFilesEvent
 
AppPreferencesEvent - Class in org.scijava.platform.event
An event sent when the application is asked to open its preferences window.
AppPreferencesEvent() - Constructor for class org.scijava.platform.event.AppPreferencesEvent
 
AppPrintEvent - Class in org.scijava.platform.event
An event sent when the app is asked to print a list of files.
AppPrintEvent() - Constructor for class org.scijava.platform.event.AppPrintEvent
 
AppQuitEvent - Class in org.scijava.platform.event
An event sent when the application is asked to quit.
AppQuitEvent() - Constructor for class org.scijava.platform.event.AppQuitEvent
 
appRaisedToForeground(AppForegroundEvent) - Method in class org.scijava.plugins.platforms.osx.OSXAppEventDispatcher
 
appReOpened(AppReOpenedEvent) - Method in class org.scijava.plugins.platforms.osx.OSXAppEventDispatcher
 
AppReOpenEvent - Class in org.scijava.platform.event
An event sent when the application is asked to re-open itself.
AppReOpenEvent() - Constructor for class org.scijava.platform.event.AppReOpenEvent
 
AppScreenSleepEvent - Class in org.scijava.platform.event
An event sent when the displays attached to the system enter and exit power save sleep.
AppScreenSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppScreenSleepEvent
 
AppService - Interface in org.scijava.app
Interface for application-level functionality.
AppSleepEvent - Class in org.scijava.platform.event
An event sent when a device enters or exits power save sleep.
AppSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSleepEvent
 
AppSystemSleepEvent - Class in org.scijava.platform.event
An event sent when the system enters and exits power save sleep.
AppSystemSleepEvent(boolean) - Constructor for class org.scijava.platform.event.AppSystemSleepEvent
 
appUnhidden(AppHiddenEvent) - Method in class org.scijava.plugins.platforms.osx.OSXAppEventDispatcher
 
AppUserSessionEvent - Class in org.scijava.platform.event
An event sent when the the user session has been changed via Fast User Switching.
AppUserSessionEvent(boolean) - Constructor for class org.scijava.platform.event.AppUserSessionEvent
 
AppUtils - Class in org.scijava.util
Useful methods for obtaining details of the SciJava application environment.
AppVisibleEvent - Class in org.scijava.platform.event
An event sent when the application has been hidden or shown.
AppVisibleEvent(boolean) - Constructor for class org.scijava.platform.event.AppVisibleEvent
 
AQUA - Static variable in class org.scijava.util.Colors
 
AQUAMARINE - Static variable in class org.scijava.util.Colors
 
AREA_STYLE - Static variable in interface org.scijava.widget.TextWidget
Widget style for text areas.
ARGBPlane - Class in org.scijava.ui
Represents a plane of ARGB pixel data.
ARGBPlane(int, int, int[]) - Constructor for class org.scijava.ui.ARGBPlane
 
ARGBPlane(int, int) - Constructor for class org.scijava.ui.ARGBPlane
 
args() - Method in interface org.scijava.main.MainService.Main
Gets the arguments to pass to the class's main method.
Arrangeable - Interface in org.scijava.ui
Arrangeable.
Arrangeable.Arrangement - Enum in org.scijava.ui
 
arrangeFramesHorizontally() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
Arranges the frames as efficiently as possibly with preference for keeping horizontal size maximal.
arrangeFramesVertically() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
Arranges the frames as efficiently as possibly with preference for keeping vertical size maximal.
array(T...) - Static method in class org.scijava.util.ArrayUtils
Creates an array of the given type, containing the specified values.
arrayContainsString(String[], String) - Method in class org.scijava.minimaven.MavenProject
 
ArrayConverters - Class in org.scijava.convert
Container class for all desired combinations of PrimitiveArrayUnwrapper and PrimitiveArrayWrapper implementations.
ArrayConverters() - Constructor for class org.scijava.convert.ArrayConverters
 
ArrayConverters.BoolArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.BoolArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.ByteArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.ByteArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.CharArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.CharArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.DoubleArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.DoubleArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.FloatArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.FloatArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.IntArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.IntArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.LongArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.LongArrayWrapper - Class in org.scijava.convert
 
ArrayConverters.ShortArrayUnwrapper - Class in org.scijava.convert
 
ArrayConverters.ShortArrayWrapper - Class in org.scijava.convert
 
ArrayUtils - Class in org.scijava.util
Utility class for creating and manipulating PrimitiveArray instances.
artifactId - Variable in class org.scijava.minimaven.Coordinate
 
asBigDecimal(Number) - Static method in class org.scijava.util.NumberUtils
 
asBigInteger(Number) - Static method in class org.scijava.util.NumberUtils
 
asHTML(String) - Method in class org.scijava.plugins.text.markdown.MarkdownTextFormat
 
asHTML(String) - Method in class org.scijava.plugins.text.plain.PlainTextFormat
 
asHTML(File) - Method in class org.scijava.text.DefaultTextService
 
asHTML(String) - Method in interface org.scijava.text.TextFormat
Expresses the given text string in HTML format.
asHTML(File) - Method in interface org.scijava.text.TextService
Expresses the given text string as HTML.
asMap() - Method in interface org.scijava.parse.Items
Gets the parsed items as a map.
assertConsistency() - Method in class org.scijava.util.LastRecentlyUsed
 
assertThat(boolean, String) - Method in class org.scijava.parse.Position
Throws IllegalStateException if something goes wrong.
assign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
assign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.ASSIGN operator.
ASSIGN - Static variable in class org.scijava.parse.Operators
 
assignProperties(MenuEntry) - Method in class org.scijava.MenuEntry
Updates any default properties of this menu entry to match those of the given menu entry.
asType(ModuleItem<?>, Class<T>) - Method in class org.scijava.command.InteractiveCommand
 
Attr - Annotation Type in org.scijava.plugin
A name/value attribute pair, used to extend the @Plugin annotation.
available() - Method in class org.scijava.io.DataHandleInputStream
 
AWTApplicationFrame - Class in org.scijava.ui.awt
AWT implementation of ApplicationFrame.
AWTApplicationFrame(String) - Constructor for class org.scijava.ui.awt.AWTApplicationFrame
 
AWTButtonWidget - Class in org.scijava.ui.awt.widget
An AWT widget that displays a button and invokes the callback of a parameter when the button is clicked.
AWTButtonWidget() - Constructor for class org.scijava.ui.awt.widget.AWTButtonWidget
 
AWTChoiceWidget - Class in org.scijava.ui.awt.widget
AWT implementation of multiple choice selector widget.
AWTChoiceWidget() - Constructor for class org.scijava.ui.awt.widget.AWTChoiceWidget
 
AWTClipboard - Class in org.scijava.ui.awt
AWT implementation of the SystemClipboard interface
AWTClipboard() - Constructor for class org.scijava.ui.awt.AWTClipboard
 
AWTColors - Class in org.scijava.ui.awt
Translates ImageJ ColorRGBs into AWT Colors.
AWTCursors - Class in org.scijava.ui.awt
Translates ImageJ MouseCursors into AWT Cursors.
AWTDragAndDropData - Class in org.scijava.ui.awt
AWT implementation of DragAndDropData.
AWTDragAndDropData(Context, Transferable) - Constructor for class org.scijava.ui.awt.AWTDragAndDropData
 
AWTDropTargetEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT DropTargetEvents as ImageJ DragAndDropEvent s.
AWTDropTargetEventDispatcher(Display<?>, EventService) - Constructor for class org.scijava.ui.awt.AWTDropTargetEventDispatcher
Creates an AWT drag-and-drop event dispatcher for the given display.
AWTFileWidget - Class in org.scijava.ui.awt.widget
AWT implementation of file selector widget.
AWTFileWidget() - Constructor for class org.scijava.ui.awt.widget.AWTFileWidget
 
AWTImageTools - Class in org.scijava.ui.awt
Convenience methods for working with AWT Images.
AWTInputEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT InputEvents as ImageJ InputEvents, translating KeyEvents into KyEvents, and MouseEvents into MsEvents.
AWTInputEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.awt.AWTInputEventDispatcher
Creates an AWT input event dispatcher for the given display.
AWTInputEventDispatcher(Display<?>, EventService) - Constructor for class org.scijava.ui.awt.AWTInputEventDispatcher
Creates an AWT input event dispatcher for the given display.
AWTInputHarvester - Class in org.scijava.ui.awt.widget
AWTInputHarvester is an InputHarvester that collects input parameter values from the user using an AWTInputPanel dialog box.
AWTInputHarvester() - Constructor for class org.scijava.ui.awt.widget.AWTInputHarvester
 
AWTInputPanel - Class in org.scijava.ui.awt.widget
AWT implementation of InputPanel.
AWTInputPanel() - Constructor for class org.scijava.ui.awt.widget.AWTInputPanel
 
AWTInputWidget<T> - Class in org.scijava.ui.awt.widget
Common superclass for AWT-based input widgets.
AWTInputWidget() - Constructor for class org.scijava.ui.awt.widget.AWTInputWidget
 
AWTMenuBarCreator - Class in org.scijava.ui.awt.menu
Populates an AWT MenuBar with menu items from a ShadowMenu.
AWTMenuBarCreator() - Constructor for class org.scijava.ui.awt.menu.AWTMenuBarCreator
 
AWTMenuCreator - Class in org.scijava.ui.awt.menu
Populates an AWT Menu with menu items from a ShadowMenu.
AWTMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AWTMenuCreator
 
AWTMessageWidget - Class in org.scijava.ui.awt.widget
AWT implementation of message widget.
AWTMessageWidget() - Constructor for class org.scijava.ui.awt.widget.AWTMessageWidget
 
AWTNumberWidget - Class in org.scijava.ui.awt.widget
AWT implementation of number chooser widget.
AWTNumberWidget() - Constructor for class org.scijava.ui.awt.widget.AWTNumberWidget
 
AWTObjectWidget - Class in org.scijava.ui.awt.widget
AWT implementation of object selector widget.
AWTObjectWidget() - Constructor for class org.scijava.ui.awt.widget.AWTObjectWidget
 
AWTPopupMenuCreator - Class in org.scijava.ui.awt.menu
Populates an AWT PopupMenu with menu items from a ShadowMenu.
AWTPopupMenuCreator() - Constructor for class org.scijava.ui.awt.menu.AWTPopupMenuCreator
 
AWTStatusBar - Class in org.scijava.ui.awt
AWT implementation of StatusBar.
AWTStatusBar(Context) - Constructor for class org.scijava.ui.awt.AWTStatusBar
 
AWTTextWidget - Class in org.scijava.ui.awt.widget
AWT implementation of text field widget.
AWTTextWidget() - Constructor for class org.scijava.ui.awt.widget.AWTTextWidget
 
AWTToggleWidget - Class in org.scijava.ui.awt.widget
AWT implementation of boolean toggle widget.
AWTToggleWidget() - Constructor for class org.scijava.ui.awt.widget.AWTToggleWidget
 
AWTToolBar - Class in org.scijava.ui.awt
Button bar with selectable tools, similar to ImageJ 1.x.
AWTToolBar(Context) - Constructor for class org.scijava.ui.awt.AWTToolBar
 
AWTUI - Class in org.scijava.ui.awt
AWT-based user interface for ImageJ.
AWTUI() - Constructor for class org.scijava.ui.awt.AWTUI
 
AWTWindowEventDispatcher - Class in org.scijava.ui.awt
Rebroadcasts AWT WindowEvents as ImageJ WinEvents.
AWTWindowEventDispatcher(Display<?>) - Constructor for class org.scijava.ui.awt.AWTWindowEventDispatcher
Creates an AWT window event dispatcher for the given display.
AWTWindowEventDispatcher(EventService) - Constructor for class org.scijava.ui.awt.AWTWindowEventDispatcher
Creates an AWT window event dispatcher for a null display, using the given event service.
AWTWindows - Class in org.scijava.ui.awt
Utility methods for working with AWT Windows.
AZURE - Static variable in class org.scijava.util.Colors
 

B

base64(byte[]) - Static method in class org.scijava.util.DigestUtils
Converts the given byte array to a base64 string.
BaseJniExtractor - Class in org.scijava.nativelib
 
BaseJniExtractor() - Constructor for class org.scijava.nativelib.BaseJniExtractor
 
BaseJniExtractor(Class<?>) - Constructor for class org.scijava.nativelib.BaseJniExtractor
 
BasicDetails - Interface in org.scijava
An interface defining basic characteristics including name, label, description, and a table of key/value pairs.
BeanshellBindings - Class in org.scijava.plugins.scripting.beanshell
Local variables for Beanshell interpreters.
BeanshellBindings(Interpreter) - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
BeanshellScriptEngine - Class in org.scijava.plugins.scripting.beanshell
BeanShell support for SciJava.
BeanshellScriptEngine() - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
BeanshellScriptLanguage - Class in org.scijava.plugins.scripting.beanshell
An adapter of the BeanShell interpreter to the SciJava scripting interface.
BeanshellScriptLanguage() - Constructor for class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
BEIGE - Static variable in class org.scijava.util.Colors
 
best(String) - Static method in class org.scijava.util.DigestUtils
Gets the given string's best available hash.
best(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the given byte array's best available hash.
bestBase64(String) - Static method in class org.scijava.util.DigestUtils
Gets the base64 string of the given string's best available hash.
bestBase64(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the base64 string of the given byte array's best available hash.
bestHex(String) - Static method in class org.scijava.util.DigestUtils
Gets the hex string of the given string's best available hash.
bestHex(byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the hex string of the given byte array's best available hash.
BigIntegerToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter
 
BISQUE - Static variable in class org.scijava.util.Colors
 
BITWISE_AND - Static variable in class org.scijava.parse.Operators
 
BITWISE_OR - Static variable in class org.scijava.parse.Operators
 
bitwiseAnd(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseAnd(int, int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseAnd(long, long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseAnd(BigInteger, BigInteger) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseAnd(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.BITWISE_AND operator.
bitwiseOr(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseOr(int, int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseOr(long, long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseOr(BigInteger, BigInteger) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
bitwiseOr(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.BITWISE_OR operator.
BLACK - Static variable in class org.scijava.util.Colors
 
BLANCHEDALMOND - Static variable in class org.scijava.util.Colors
 
BLUE - Static variable in class org.scijava.util.Colors
 
BLUEVIOLET - Static variable in class org.scijava.util.Colors
 
BoolArray - Class in org.scijava.util
An extensible array of boolean elements.
BoolArray() - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by a fixed-size array.
BoolArray(int) - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by a fixed-size array.
BoolArray(boolean[]) - Constructor for class org.scijava.util.BoolArray
Constructs an extensible array of booleans, backed by the given fixed-size array.
BoolArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper
 
BoolArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.BoolArrayWrapper
 
braces(Object[]) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
braces(Object[]) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.BRACES operator.
BRACES - Static variable in class org.scijava.parse.Operators
 
brackets(Object[]) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
brackets(Object[]) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.BRACKETS operator.
BRACKETS - Static variable in class org.scijava.parse.Operators
 
BROWN - Static variable in class org.scijava.util.Colors
 
buffer - Variable in class org.scijava.minimaven.ReadInto
 
buffer - Variable in class org.scijava.util.LineOutputStream
 
buffer - Variable in class org.scijava.util.ReadInto
 
build() - Method in class org.scijava.minimaven.MavenProject
Compiles the project.
build(boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
build(boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
build(boolean, boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
Compiles the project and optionally builds the .jar artifact.
buildAndInstall() - Method in class org.scijava.minimaven.MavenProject
Builds the artifact and installs it and its dependencies into ${imagej.app.directory}.
buildAndInstall(File) - Method in class org.scijava.minimaven.MavenProject
Builds the project an its dependencies, and installs them into the given ImageJ.app/ directory structure.
buildAndInstall(File, boolean) - Method in class org.scijava.minimaven.MavenProject
Builds the project an its dependencies, and installs them into the given ImageJ.app/ directory structure.
BuildEnvironment - Class in org.scijava.minimaven
The build environment of MiniMaven.
BuildEnvironment(PrintStream, boolean, boolean, boolean) - Constructor for class org.scijava.minimaven.BuildEnvironment
 
buildFromSource - Variable in class org.scijava.minimaven.MavenProject
 
buildJar() - Method in class org.scijava.minimaven.MavenProject
Builds the artifact.
buildNumber - Variable in class org.scijava.minimaven.SnapshotPOMHandler
 
buildPanel(InputPanel<P, W>, Module) - Method in class org.scijava.widget.AbstractInputHarvester
 
buildPanel(InputPanel<P, W>, Module) - Method in interface org.scijava.widget.InputHarvester
Populates the given InputPanel with widgets corresponding to the given Module instance.
built - Variable in class org.scijava.minimaven.MavenProject
 
BURLYWOOD - Static variable in class org.scijava.util.Colors
 
Button - Interface in org.scijava.widget
A interface used for marking input fields of plugin parameter dialogs as button fields.
ButtonWidget<U> - Interface in org.scijava.widget
Widget interface for buttons.
ByteArray - Class in org.scijava.util
An extensible array of byte elements.
ByteArray() - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by a fixed-size array.
ByteArray(int) - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by a fixed-size array.
ByteArray(byte[]) - Constructor for class org.scijava.util.ByteArray
Constructs an extensible array of bytes, backed by the given fixed-size array.
ByteArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper
 
ByteArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.ByteArrayWrapper
 
Bytes - Class in org.scijava.util
Useful methods for reading, writing, decoding and converting bytes and byte arrays.
bytes(String) - Static method in class org.scijava.util.DigestUtils
Converts the given string to a byte array.
bytes(int) - Static method in class org.scijava.util.DigestUtils
Converts the given integer into a byte array.
BytesLocation - Class in org.scijava.io
Location backed by a ByteBuffer.
BytesLocation(ByteBuffer) - Constructor for class org.scijava.io.BytesLocation
 
BytesLocation(byte[]) - Constructor for class org.scijava.io.BytesLocation
 
BytesLocation(byte[], int, int) - Constructor for class org.scijava.io.BytesLocation
 
ByteToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter
 
ByteToBigIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter
 
ByteToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToDoubleConverter
 
ByteToFloatConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToFloatConverter
 
ByteToIntegerConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToIntegerConverter
 
ByteToLongConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToLongConverter
 
ByteToShortConverter() - Constructor for class org.scijava.convert.NumberConverters.ByteToShortConverter
 

C

cacheAndReturn(String, MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
cacheAnnotatedObjects(Class<?>, Query) - Static method in class org.scijava.util.ClassUtils
This method scans the provided class, its superclasses and interfaces for all supported Annotation : AnnotatedElement pairs.
CacheService - Interface in org.scijava.cache
Base interface for cache services in SciJava
CADETBLUE - Static variable in class org.scijava.util.Colors
 
call(String[], boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
call(String[], boolean, boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
call() - Method in class org.scijava.module.ModuleRunner
 
callback(Module) - Method in class org.scijava.module.AbstractModuleItem
 
callback(Module) - Method in interface org.scijava.module.ModuleItem
Invokes this item's callback function, if any, on the given module.
callback() - Method in class org.scijava.widget.DefaultWidgetModel
 
callback() - Method in interface org.scijava.widget.WidgetModel
Executes the callback associated with this widget's associated input.
canCancel() - Method in class org.scijava.command.CommandInfo
 
canCancel() - Method in class org.scijava.command.DynamicCommandInfo
 
canCancel() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module condones cancellation.
canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
canCast(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils
canCast(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils
Checks whether objects of the given class can be cast to the specified type.
canCast(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils
Checks whether the given object can be cast to the specified type.
cancel(String) - Method in interface org.scijava.Cancelable
Cancels the operation execution, with the given reason for doing so.
cancel() - Method in class org.scijava.command.CommandModule
Cancels the command, undoing the effects of any CommandModule.preview() calls.
cancel(String) - Method in class org.scijava.command.CommandModule
 
cancel(String) - Method in class org.scijava.command.ContextCommand
Cancels the command execution, with the given reason for doing so.
cancel(String) - Method in class org.scijava.command.DynamicCommand
 
cancel() - Method in class org.scijava.command.InteractiveCommand
 
cancel(String) - Method in class org.scijava.command.ModuleCommand
 
cancel() - Method in interface org.scijava.command.Previewable
Does whatever is necessary upon cancelation to reset things back to before the operation was executed.
cancel() - Method in class org.scijava.module.AbstractModule
 
cancel() - Method in interface org.scijava.module.Module
Performs necessary cleanup in response to cancellation of the module execution.
cancel(String) - Method in class org.scijava.module.process.AbstractPreprocessorPlugin
 
cancel() - Method in class org.scijava.plugins.commands.debug.ParamAssignOrder
 
cancel(String) - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
 
Cancelable - Interface in org.scijava
An operation that can be canceled.
canConvert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Object, Type) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Object, Class<?>) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConverter
 
canConvert(Class<?>, Type) - Method in class org.scijava.convert.AbstractConverter
Deprecated.
canConvert(Object, Class<?>) - Method in class org.scijava.convert.CastingConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.CastingConverter
 
canConvert(ConversionRequest) - Method in interface org.scijava.convert.Converter
Checks whether a given can be processed, by converting the desired ConversionRequest.sourceClass() to its ConversionRequest.destClass() or ConversionRequest.destType().
canConvert(Object, Type) - Method in interface org.scijava.convert.Converter
Checks whether the given object's type can be converted to the specified type.
canConvert(Object, Class<?>) - Method in interface org.scijava.convert.Converter
Checks whether the given object's type can be converted to the specified type.
canConvert(Class<?>, Type) - Method in interface org.scijava.convert.Converter
canConvert(Class<?>, Class<?>) - Method in interface org.scijava.convert.Converter
canConvert(Class<?>, Type) - Method in class org.scijava.convert.DefaultConverter
Deprecated.
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.DefaultConverter
Deprecated.
canConvert(ConversionRequest) - Method in class org.scijava.convert.NullConverter
 
canConvert(Object, Type) - Method in class org.scijava.convert.NullConverter
 
canConvert(Object, Class<?>) - Method in class org.scijava.convert.NullConverter
 
canConvert(Class<?>, Class<?>) - Method in class org.scijava.convert.NullConverter
 
canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
canConvert(Object, Class<?>) - Static method in class org.scijava.util.ClassUtils
canConvert(Class<?>, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Class<?>, Class<?>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Object, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canConvert(Object, Class<?>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
canDisplay(Class<?>) - Method in class org.scijava.display.AbstractDisplay
 
canDisplay(Class<?>) - Method in interface org.scijava.display.Display
Tests whether the display is capable of visualizing objects of the given class.
canDisplay(Object) - Method in interface org.scijava.display.Display
Tests whether the display is capable of visualizing the given object.
canHandleFile(File) - Method in class org.scijava.script.ScriptLanguageIndex
 
canHandleFile(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
canHandleFile(File) - Method in interface org.scijava.script.ScriptService
TODO
canHandleFile(String) - Method in interface org.scijava.script.ScriptService
TODO
canPreview() - Method in class org.scijava.command.CommandInfo
 
canPreview() - Method in class org.scijava.command.DynamicCommandInfo
 
canPreview() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module supports previews.
canRunHeadless() - Method in class org.scijava.command.CommandInfo
 
canRunHeadless() - Method in interface org.scijava.module.ModuleInfo
Gets whether the module condones headless execution.
canView(Display<?>) - Method in class org.scijava.ui.headless.HeadlessDisplayViewer
 
canView(Display<?>) - Method in interface org.scijava.ui.viewer.DisplayViewer
Returns true if an instance of this display viewer can view the given display.
canView(Display<?>) - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer
 
capacity() - Method in class org.scijava.util.AbstractPrimitiveArray
Gets the current capacity of the backing array.
capacity() - Method in interface org.scijava.util.PrimitiveArray
Gets the current capacity of the backing array.
cast(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils
cast(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils
Casts the given object to the specified type, or null if the types are incompatible.
CastingConverter - Class in org.scijava.convert
Minimal Converter implementation to do direct casting.
CastingConverter() - Constructor for class org.scijava.convert.CastingConverter
 
cdata(String) - Method in class org.scijava.util.XML
Obtains the CDATA identified by the given XPath expression.
cdata(Node) - Static method in class org.scijava.util.XML
Gets the CData beneath the given node.
cdata(Element, String) - Static method in class org.scijava.util.XML
Gets the CData beneath the given element's specified child.
centerWindow(Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window on the screen.
centerWindow(Window, Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window within the specified parent window.
centerWindow(Rectangle, Window) - Static method in class org.scijava.ui.awt.AWTWindows
Centers the given window within the specified bounds.
ch(CharSequence) - Method in class org.scijava.parse.Position
 
ch(CharSequence, int) - Method in class org.scijava.parse.Position
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
changedUpdate(DocumentEvent) - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
characters(char[], int, int) - Method in class org.scijava.minimaven.AbstractPOMHandler
 
CharArray - Class in org.scijava.util
An extensible array of char elements.
CharArray() - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by a fixed-size array.
CharArray(int) - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by a fixed-size array.
CharArray(char[]) - Constructor for class org.scijava.util.CharArray
Constructs an extensible array of chars, backed by the given fixed-size array.
CharArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayUnwrapper
 
CharArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.CharArrayWrapper
 
charAt(int) - Method in class org.scijava.parse.SubSequence
 
CHARTREUSE - Static variable in class org.scijava.util.Colors
 
check - Variable in class org.scijava.swing.checkboxtree.CheckBoxNodePanel
 
check(D, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Throws IllegalArgumentException if (data, display) pair is incompatible.
check(boolean) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
check(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkBounds(int) - Method in class org.scijava.util.AbstractPrimitiveArray
Checks that the index is less than the size of the array.
CheckBoxNodeData - Class in org.scijava.swing.checkboxtree
A tree node user object, for use with a JTree, that tracks whether it is checked.
CheckBoxNodeData(String, boolean) - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
CheckBoxNodeEditor - Class in org.scijava.swing.checkboxtree
A TreeCellEditor for check box tree nodes.
CheckBoxNodeEditor(JTree) - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
CheckBoxNodePanel - Class in org.scijava.swing.checkboxtree
Helper class defining Swing components for check box node renderer UI.
CheckBoxNodePanel() - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodePanel
 
CheckBoxNodeRenderer - Class in org.scijava.swing.checkboxtree
A TreeCellRenderer for check box tree nodes.
CheckBoxNodeRenderer() - Constructor for class org.scijava.swing.checkboxtree.CheckBoxNodeRenderer
 
checkDirectory(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkDirectory(File, File, long) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
CheckInputsPreprocessor - Class in org.scijava.module.process
A preprocessor plugin that does a final check of input parameters, complaining if any required ones are null.
CheckInputsPreprocessor() - Constructor for class org.scijava.module.process.CheckInputsPreprocessor
 
checkJar(File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
checkObject(Object) - Method in class org.scijava.display.AbstractDisplay
 
checkParentTag(String, String, String) - Method in class org.scijava.minimaven.MavenProject
 
CheckSezpoz - Class in org.scijava.util
Deprecated.
checkUpToDate(boolean) - Method in class org.scijava.minimaven.MavenProject
 
child(int) - Method in class org.scijava.parse.SyntaxTree
 
children - Variable in class org.scijava.minimaven.MavenProject
 
CHOCOLATE - Static variable in class org.scijava.util.Colors
 
ChoiceWidget<U> - Interface in org.scijava.widget
Widget interface for multiple choice selectors.
chooseFile(File, String) - Method in class org.scijava.ui.awt.AWTUI
 
chooseFile(File, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFile(String, File, String) - Method in class org.scijava.ui.DefaultUIService
 
chooseFile(String, File, String) - Method in class org.scijava.ui.headless.HeadlessUI
 
chooseFile(File, String) - Method in class org.scijava.ui.swing.AbstractSwingUI
 
chooseFile(File, String) - Method in interface org.scijava.ui.UIService
Prompts the user to choose a file.
chooseFile(String, File, String) - Method in interface org.scijava.ui.UIService
Prompts the user to choose a file.
chooseFile(File, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a file.
chooseFile(String, File, String) - Method in interface org.scijava.ui.UserInterface
Prompts the user to choose a file.
clampToRange(Class<?>, Number, Number, Number) - Static method in class org.scijava.util.NumberUtils
 
classifier - Variable in class org.scijava.minimaven.Coordinate
 
className() - Method in class org.scijava.annotations.IndexItem
Returns the name of the annotated class.
className() - Method in interface org.scijava.main.MainService.Main
Gets the name of the class containing the main method to run.
ClassUtils - Class in org.scijava.util
Useful methods for working with Class objects and primitive types.
clean() - Method in class org.scijava.minimaven.MavenProject
 
clean(File) - Method in class org.scijava.minimaven.MavenProject
 
clear() - Method in class org.scijava.display.AbstractDisplay
 
clear() - Method in class org.scijava.event.DefaultEventHistory
 
clear() - Method in interface org.scijava.event.EventHistory
Clears the recorded event history.
clear() - Method in class org.scijava.io.DefaultRecentFileService
 
clear() - Method in interface org.scijava.io.RecentFileService
Clears the list of recent files.
clear() - Method in class org.scijava.menu.ShadowMenu
 
clear() - Method in class org.scijava.object.ObjectIndex
 
clear() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
clear() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
clear() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
clear() - Method in class org.scijava.plugins.scripting.jython.JythonBindings
 
clear() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
clear(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
 
clear(String) - Method in class org.scijava.prefs.DefaultPrefService
 
clear(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
clear(String, String) - Method in class org.scijava.prefs.DefaultPrefService
 
clear(Class<?>) - Method in interface org.scijava.prefs.PrefService
 
clear(String) - Method in interface org.scijava.prefs.PrefService
Clears the node.
clear(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Clears the node indexed under the given class.
clear(String, String) - Method in interface org.scijava.prefs.PrefService
Clears the ndoe indexed under the given path.
clear() - Method in class org.scijava.ui.swing.commands.WatchEventsFrame
Clears the text pane.
clear() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
clear() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
clear() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
clear() - Method in class org.scijava.util.AbstractPrimitiveArray
 
clear() - Method in class org.scijava.util.LastRecentlyUsed
Empties the data structure.
clear(Class<?>) - Static method in class org.scijava.util.Prefs
Deprecated.
 
clear(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Clears the node.
clear(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
clearAll() - Method in class org.scijava.prefs.DefaultPrefService
 
clearAll() - Method in interface org.scijava.prefs.PrefService
Clears everything.
clearAll() - Static method in class org.scijava.util.Prefs
Deprecated.
Clears everything.
clearParameters() - Method in class org.scijava.module.AbstractModuleInfo
Clears input and output parameters.
ClearRecent - Class in org.scijava.plugins.commands.io
Clears the list of recently opened files.
ClearRecent() - Constructor for class org.scijava.plugins.commands.io.ClearRecent
 
clearStatus() - Method in class org.scijava.app.DefaultStatusService
 
clearStatus() - Method in interface org.scijava.app.StatusService
Clears the status message.
ClojureBindings - Class in org.scijava.plugins.scripting.clojure
A Bindings wrapper around Clojure's local variables.
ClojureBindings() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureBindings
 
ClojureScriptEngine - Class in org.scijava.plugins.scripting.clojure
A Clojure interpreter.
ClojureScriptEngine() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
ClojureScriptLanguage - Class in org.scijava.plugins.scripting.clojure
An adapter of the Clojure interpreter to the SciJava scripting interface.
ClojureScriptLanguage() - Constructor for class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
clone() - Method in class org.scijava.util.MersenneTwisterFast
 
close() - Method in class org.scijava.annotations.legacy.LegacyReader
 
close() - Method in class org.scijava.console.MultiOutputStream
 
close() - Method in class org.scijava.display.AbstractDisplay
 
close() - Method in interface org.scijava.display.Display
Closes the display and disposes its resources.
close() - Method in class org.scijava.io.DataHandleInputStream
 
close() - Method in class org.scijava.io.DataHandleOutputStream
 
close() - Method in class org.scijava.io.FileHandle
 
Close - Class in org.scijava.plugins.commands.display
Closes the active display.
Close() - Constructor for class org.scijava.plugins.commands.display.Close
 
close() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
close() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
close() - Method in interface org.scijava.ui.viewer.DisplayWindow
 
close() - Method in class org.scijava.util.LineOutputStream
Flushes the current line buffer if any bytes are left in it.
CloseAll - Class in org.scijava.plugins.commands.display
Closes all displays.
CloseAll() - Constructor for class org.scijava.plugins.commands.display.CloseAll
 
CloseConfirmable - Interface in org.scijava.ui
Interface for UI components that require the user to deal with changed state before the component can be closed.
closeLine(SourceDataLine) - Method in class org.scijava.util.TunePlayer
 
closeOnEOF - Variable in class org.scijava.util.ReadInto
 
CodeGenerator - Interface in org.scijava.script
Code Generator Interface
CodeGeneratorJava - Class in org.scijava.script
CodeGenerator for Java.
CodeGeneratorJava() - Constructor for class org.scijava.script.CodeGeneratorJava
 
CodeRunner - Interface in org.scijava.run
A plugin which extends the RunService's execution handling.
colon(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
colon(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.COLON operator.
COLON - Static variable in class org.scijava.parse.Operators
 
ColorRGB - Class in org.scijava.util
A color with red, green and blue color components.
ColorRGB(int, int, int) - Constructor for class org.scijava.util.ColorRGB
 
ColorRGB(String) - Constructor for class org.scijava.util.ColorRGB
Parses a color from the given string.
ColorRGBA - Class in org.scijava.util
A color with red, green, blue and alpha color components.
ColorRGBA(int, int, int, int) - Constructor for class org.scijava.util.ColorRGBA
 
Colors - Class in org.scijava.util
Predefined ColorRGB objects and related utility methods.
ColorWidget<U> - Interface in org.scijava.widget
Widget interface for color choosers.
COLUMN_COUNT - Static variable in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
combine(File) - Method in class org.scijava.annotations.AnnotationCombiner
Reads in annotations from all available resources and combines them.
combine() - Method in class org.scijava.util.CombineAnnotations
Deprecated.
combine(File) - Method in interface org.scijava.util.Combiner
Combines a collection of items and writes the result to the provided directory.
combine(File) - Method in class org.scijava.util.ServiceCombiner
 
CombineAnnotations - Class in org.scijava.util
Deprecated.
Use AnnotationCombiner instead.
CombineAnnotations() - Constructor for class org.scijava.util.CombineAnnotations
Deprecated.
Combiner - Interface in org.scijava.util
Interface for combining structurally-delicate items (such as annotations) which need to be unified to a single output.
command() - Method in class org.scijava.AbstractGateway
 
Command - Interface in org.scijava.command
Command is a plugin that is executable.
command() - Method in interface org.scijava.Gateway
Gets this application context's CommandService.
CommandCodeRunner - Class in org.scijava.command.run
Runs the given Command class.
CommandCodeRunner() - Constructor for class org.scijava.command.run.CommandCodeRunner
 
CommandFinder - Class in org.scijava.ui.swing.commands
A plugin to display the CommandFinderPanel in a dialog.
CommandFinder() - Constructor for class org.scijava.ui.swing.commands.CommandFinder
 
CommandFinderPanel - Class in org.scijava.ui.swing.commands
A panel that allows the user to search for SciJava commands.
CommandFinderPanel(ModuleService, String) - Constructor for class org.scijava.ui.swing.commands.CommandFinderPanel
 
CommandFinderPanel.CommandTableModel - Class in org.scijava.ui.swing.commands
 
commandHelp() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
commandHelp() - Method in interface org.scijava.plugins.scripting.matlab.MATLABService
Builds a complete usage message by querying the MATLABCommands.help() method of all available commands.
CommandInfo - Class in org.scijava.command
A collection of metadata about a particular Command.
CommandInfo(String) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(String, Plugin) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(Class<? extends Command>) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object.
CommandInfo(PluginInfo<Command>) - Constructor for class org.scijava.command.CommandInfo
Creates a new command metadata object describing the same command as the given PluginInfo.
CommandInfo(PluginInfo<Command>, String, Class<? extends Command>, Plugin) - Constructor for class org.scijava.command.CommandInfo
 
CommandModule - Class in org.scijava.command
Module adapter class for working with a Command instance.
CommandModule(CommandInfo) - Constructor for class org.scijava.command.CommandModule
Creates a command module for the given PluginInfo.
CommandModule(CommandInfo, Command) - Constructor for class org.scijava.command.CommandModule
Creates a command module for the given CommandInfo, around the specified Command instance.
CommandModuleItem<T> - Class in org.scijava.command
ModuleItem implementation describing an input or output of a command.
CommandModuleItem(ModuleInfo, Field) - Constructor for class org.scijava.command.CommandModuleItem
 
CommandService - Interface in org.scijava.command
Interface for service that keeps track of available commands.
commandService() - Method in class org.scijava.platform.DefaultPlatformService
 
commandService() - Method in interface org.scijava.platform.PlatformService
 
commandsList - Variable in class org.scijava.ui.swing.commands.CommandFinderPanel
 
CommandTableModel(List<ModuleInfo>, String) - Constructor for class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
compare(Prioritized, Prioritized) - Static method in class org.scijava.Priority
Compares two Prioritized objects.
compare(Class<?>, Class<?>) - Static method in class org.scijava.util.ClassUtils
Compares two Class objects using their fully qualified names.
compare(T, T) - Static method in class org.scijava.util.MiscUtils
Compares two comparable objects, even if one or both of them are null.
compare(T, T, boolean) - Static method in class org.scijava.util.MiscUtils
Compares two comparable objects, even if one or both of them are null.
compareTo(ShadowMenu) - Method in class org.scijava.menu.ShadowMenu
 
compareTo(MavenProject) - Method in class org.scijava.minimaven.MavenProject
 
compareTo(Operator) - Method in class org.scijava.parse.Operator
 
compareTo(Prioritized) - Method in interface org.scijava.Prioritized
 
compareTo(Prioritized) - Method in interface org.scijava.UIDetails
 
compareTo(POM) - Method in class org.scijava.util.POM
 
compareVersion(String, String) - Static method in class org.scijava.minimaven.BuildEnvironment
 
compareVersions(String, String) - Static method in class org.scijava.util.POM
Compares two version strings.
compile(String) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
compile(Reader) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
compile(String) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
compile(Reader) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
compile(File) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles the specified .java file.
compile(File, Writer) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles the specified .java file.
CompileError(Object) - Constructor for exception org.scijava.minimaven.JavaCompiler.CompileError
 
complement(Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
complement(int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
complement(long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
complement(Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.COMPLEMENT operator.
COMPLEMENT - Static variable in class org.scijava.parse.Operators
 
configure(PlatformService) - Method in class org.scijava.platform.AbstractPlatform
 
configure(PlatformService) - Method in interface org.scijava.platform.Platform
Activates and configures the platform.
configure(PlatformService) - Method in class org.scijava.plugins.platforms.osx.OSXPlatform
 
configure() - Method in interface org.scijava.tool.Tool
Occurs when the user right clicks this tool's icon.
confirmClose() - Method in interface org.scijava.ui.CloseConfirmable
 
console() - Method in class org.scijava.AbstractGateway
 
console() - Method in interface org.scijava.Gateway
Gets this application context's ConsoleService.
ConsoleArgument - Interface in org.scijava.console
A plugin which extends an application's command line argument handling.
ConsolePane<C> - Interface in org.scijava.ui.console
A panel which displays stdout and stderr console output.
ConsoleService - Interface in org.scijava.console
Interface for service that manages interaction with the console.
ConsoleUtils - Class in org.scijava.console
Deprecated.
Use alternatives instead (see individual method docs).
ConsoleUtils() - Constructor for class org.scijava.console.ConsoleUtils
Deprecated.
 
consume() - Method in class org.scijava.event.SciJavaEvent
 
contains(Object) - Method in class org.scijava.display.AbstractDisplay
 
contains(Object) - Method in class org.scijava.menu.ShadowMenu
 
contains(Object) - Method in class org.scijava.object.ObjectIndex
 
contains(Object) - Method in class org.scijava.object.SortedObjectIndex
 
contains(byte[], byte) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(boolean[], boolean) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(char[], char) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(double[], double) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(float[], float) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(int[], int) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(long[], long) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(short[], short) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(Object[], Object) - Static method in class org.scijava.util.ArrayUtils
Returns true if the given value is contained in the specified array.
contains(boolean) - Method in class org.scijava.util.BoolArray
 
contains(Object) - Method in class org.scijava.util.BoolArray
 
contains(byte) - Method in class org.scijava.util.ByteArray
 
contains(Object) - Method in class org.scijava.util.ByteArray
 
contains(char) - Method in class org.scijava.util.CharArray
 
contains(Object) - Method in class org.scijava.util.CharArray
 
contains(double) - Method in class org.scijava.util.DoubleArray
 
contains(Object) - Method in class org.scijava.util.DoubleArray
 
contains(float) - Method in class org.scijava.util.FloatArray
 
contains(Object) - Method in class org.scijava.util.FloatArray
 
contains(int) - Method in class org.scijava.util.IntArray
 
contains(Object) - Method in class org.scijava.util.IntArray
 
contains(IntCoords) - Method in class org.scijava.util.IntRect
Tests whether the given coordinates lie within the rectangle.
contains(Object) - Method in class org.scijava.util.LastRecentlyUsed
 
contains(long) - Method in class org.scijava.util.LongArray
 
contains(Object) - Method in class org.scijava.util.LongArray
 
contains(Object) - Method in class org.scijava.util.ObjectArray
 
contains(RealCoords) - Method in class org.scijava.util.RealRect
Tests whether the given coordinates lie within the rectangle.
contains(short) - Method in class org.scijava.util.ShortArray
 
contains(Object) - Method in class org.scijava.util.ShortArray
 
containsAll(Collection<?>) - Method in class org.scijava.display.AbstractDisplay
 
containsAll(Collection<?>) - Method in class org.scijava.menu.ShadowMenu
 
containsAll(Collection<?>) - Method in class org.scijava.object.ObjectIndex
 
containsAll(Collection<?>) - Method in class org.scijava.object.SortedObjectIndex
 
containsAll(Collection<?>) - Method in class org.scijava.util.BoolArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ByteArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.CharArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.DoubleArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.FloatArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.IntArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.LastRecentlyUsed
 
containsAll(Collection<?>) - Method in class org.scijava.util.LongArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ObjectArray
 
containsAll(Collection<?>) - Method in class org.scijava.util.ShortArray
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.jython.JythonBindings
 
containsKey(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
containsProject(String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
containsProject(Coordinate) - Method in class org.scijava.minimaven.BuildEnvironment
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.jython.JythonBindings
 
containsValue(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
context() - Method in class org.scijava.AbstractContextual
 
context() - Method in class org.scijava.command.CommandModule
 
context() - Method in class org.scijava.command.DynamicCommand
 
Context - Class in org.scijava
Top-level SciJava application context, which initializes and maintains a list of services.
Context() - Constructor for class org.scijava.Context
Creates a new SciJava application context with all available services.
Context(boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context.
Context(boolean, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context.
Context(Class...) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(PluginIndex) - Constructor for class org.scijava.Context
Creates a new SciJava application context with all available services from the specified PluginIndex.
Context(Collection<Class<? extends Service>>, PluginIndex) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
Context(Collection<Class<? extends Service>>, PluginIndex, boolean) - Constructor for class org.scijava.Context
Creates a new SciJava application context with the specified services (and any required service dependencies).
context() - Method in interface org.scijava.Contextual
Gets the application context to which the object belongs.
context() - Method in class org.scijava.script.ScriptInfo
 
context() - Method in class org.scijava.script.ScriptModule
 
CONTEXT_MENU_ROOT - Static variable in annotation type org.scijava.plugin.Plugin
Deprecated.
Use a context-specific menu root string instead. This one is too general. There is no such thing as a "default context menu" since such a thing wouldn't be a context menu!
ContextCommand - Class in org.scijava.command
A command that knows its context.
ContextCommand() - Constructor for class org.scijava.command.ContextCommand
 
ContextDisposingEvent - Class in org.scijava.event
Event to be published just before disposing a context.
ContextDisposingEvent() - Constructor for class org.scijava.event.ContextDisposingEvent
 
Contextual - Interface in org.scijava
An object that belongs to a SciJava application context.
ConversionRequest - Class in org.scijava.convert
Currency for use in Converter and ConvertService methods.
ConversionRequest(Object, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionRequest(Type, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionRequest(Object, Type, Type) - Constructor for class org.scijava.convert.ConversionRequest
 
ConversionUtils - Class in org.scijava.util
Useful methods for converting and casting between classes and types.
convert() - Method in class org.scijava.AbstractGateway
 
convert(Object, Type) - Method in class org.scijava.convert.AbstractConverter
 
convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConverter
 
convert(Object, Type) - Method in class org.scijava.convert.AbstractConvertService
 
convert(Object, Class<T>) - Method in class org.scijava.convert.AbstractConvertService
 
convert(ConversionRequest) - Method in class org.scijava.convert.AbstractConvertService
 
convert(Object, Class<T>) - Method in class org.scijava.convert.CastingConverter
 
convert(Object, Type) - Method in interface org.scijava.convert.Converter
As Converter.convert(Object, Class) but capable of creating and populating multi-element objects (Collections and array types).
convert(Object, Class<T>) - Method in interface org.scijava.convert.Converter
Converts the given object to an object of the specified type.
convert(ConversionRequest) - Method in interface org.scijava.convert.Converter
convert(Object, Type) - Method in interface org.scijava.convert.ConvertService
 
convert(Object, Class<T>) - Method in interface org.scijava.convert.ConvertService
 
convert(ConversionRequest) - Method in interface org.scijava.convert.ConvertService
 
convert(Object, Type) - Method in class org.scijava.convert.DefaultConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.DefaultConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.NullConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToBigDecimalConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToBigIntegerConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToDoubleConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToFloatConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToIntegerConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToLongConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.NumberToNumberConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToNumberConverter
 
convert(Number) - Method in class org.scijava.convert.NumberToShortConverter
 
convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayUnwrapper
 
convert(Object, Class<T>) - Method in class org.scijava.convert.PrimitiveArrayWrapper
 
convert(Object, Class<T>) - Static method in class org.scijava.util.ClassUtils
convert(Object, Type) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
convert(Object, Class<T>) - Static method in class org.scijava.util.ConversionUtils
Deprecated. 
convertData(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
convertData(DragAndDropData) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Converts the given DragAndDropData to the type of data object supported by this handler.
convertDataUnchecked(DragAndDropData) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Converts the given data to this handler's native data type, without verifying compatibility first.
Converter<I,O> - Interface in org.scijava.convert
Extensible conversion Plugin for converting between classes and types.
convertObject(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
convertObject(Object) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Converts the given object to the type of data object supported by this handler.
convertObjectUnchecked(Object) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
Converts the given object to this handler's native data type, without verifying compatibility first.
ConvertService - Interface in org.scijava.convert
Service for converting between types using an extensible plugin: Converter.
convertToEnum(String, Class<T>) - Static method in class org.scijava.util.ConversionUtils
Converts the given string value to an enumeration constant of the specified type.
Coordinate - Class in org.scijava.minimaven
TODO
Coordinate() - Constructor for class org.scijava.minimaven.Coordinate
 
Coordinate(String, String, String) - Constructor for class org.scijava.minimaven.Coordinate
 
Coordinate(String, String, String, String, boolean, String, String) - Constructor for class org.scijava.minimaven.Coordinate
Deprecated.
Coordinate(String, String, String, String, boolean, String, String, Set<String>) - Constructor for class org.scijava.minimaven.Coordinate
 
coordinate - Variable in class org.scijava.minimaven.MavenProject
 
copy(InputStream, File) - Static method in class org.scijava.minimaven.BuildEnvironment
 
copy(InputStream, OutputStream, boolean) - Static method in class org.scijava.minimaven.BuildEnvironment
 
copyArray() - Method in class org.scijava.util.AbstractPrimitiveArray
 
copyArray() - Method in interface org.scijava.util.PrimitiveArray
Returns a copy of the primitive-array array.
copyDependencies(File, boolean) - Method in class org.scijava.minimaven.MavenProject
Copy the runtime dependencies
copyFile(File, File) - Static method in class org.scijava.minimaven.BuildEnvironment
 
CORAL - Static variable in class org.scijava.util.Colors
 
CORNFLOWERBLUE - Static variable in class org.scijava.util.Colors
 
CORNSILK - Static variable in class org.scijava.util.Colors
 
count() - Method in class org.scijava.parse.SyntaxTree
 
create(String) - Static method in class org.scijava.input.Accelerator
Creates an accelerator from the given string representation.
create(Class<P>) - Method in interface org.scijava.plugin.PTService
Creates an instance of the given plugin class.
create(Class<P>) - Method in interface org.scijava.plugin.SingletonService
 
create(D) - Method in interface org.scijava.plugin.WrapperService
Creates a new plugin instance wrapping the given associated data object.
createBindings() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
createBindings() - Method in class org.scijava.script.AbstractScriptEngine
 
createBindings() - Method in class org.scijava.script.AdaptedScriptEngine
 
createButton16(ImageIcon) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
createButton16(ImageIcon, String) - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
createConsoleMenu() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
createDisplay(Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplay(String, Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplay(Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.
createDisplay(String, Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, publishing a DisplayCreatedEvent to notify interested parties.
createDisplayQuietly(Object) - Method in class org.scijava.display.DefaultDisplayService
 
createDisplayQuietly(Object) - Method in interface org.scijava.display.DisplayService
Creates a display for the given object, without publishing a DisplayCreatedEvent.
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.awt.AWTUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.headless.HeadlessUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
createDisplayWindow(Display<?>) - Method in class org.scijava.ui.swing.sdi.SwingSDIUI
 
createDisplayWindow(Display<?>, EventService) - Static method in class org.scijava.ui.swing.sdi.SwingSDIUI
Utility method for creating SwingDisplayWindows.
createDisplayWindow(Display<?>) - Method in interface org.scijava.ui.UserInterface
Creates a new display window housing the given display, or null if not applicable.
createExactService(Class<S>) - Method in class org.scijava.service.ServiceHelper
Instantiates a service of the given class, registering it in the index.
createImage(int, int) - Static method in class org.scijava.ui.awt.AWTImageTools
Creates a BufferedImage compatible with the graphics environment.
createInputPanel() - Method in class org.scijava.ui.awt.widget.AWTInputHarvester
 
createInputPanel() - Method in class org.scijava.ui.swing.widget.SwingInputHarvester
 
createInputPanel() - Method in interface org.scijava.widget.InputHarvester
Constructs an empty InputPanel.
createInstance() - Method in class org.scijava.command.CommandInfo
 
createInstance() - Method in interface org.scijava.Instantiable
Creates an object.
createInstance(PluginInfo<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstance() - Method in class org.scijava.plugin.PluginInfo
 
createInstance(PluginInfo<PT>) - Method in interface org.scijava.plugin.PluginService
Creates an instance of the given plugin.
createInstances(List<PluginInfo<PT>>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstances(List<PluginInfo<PT>>) - Method in interface org.scijava.plugin.PluginService
Creates an instance of each of the plugins on the given list.
createInstancesOfType(Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
createInstancesOfType(Class<PT>) - Method in interface org.scijava.plugin.PluginService
Creates one instance each of the available plugins of the given type.
createLeaf(ShadowMenu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
createLeaf(ShadowMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createMenus(ShadowMenu, T) - Method in class org.scijava.menu.AbstractMenuCreator
 
createMenus(ShadowMenu, T) - Method in interface org.scijava.menu.MenuCreator
 
createMenus(MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService
Populates a UI-specific application menu structure.
createMenus(String, MenuCreator<T>, T) - Method in interface org.scijava.menu.MenuService
Populates a UI-specific menu structure.
createMenus() - Method in class org.scijava.ui.awt.AWTUI
 
createMenus() - Method in class org.scijava.ui.swing.AbstractSwingUI
Creates a JMenuBar from the master ShadowMenu structure.
createMenus(ShadowMenu, T) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createModel(Number, Number, Number, Number) - Method in class org.scijava.ui.swing.widget.SpinnerNumberModelFactory
 
createModel(InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Method in interface org.scijava.widget.WidgetService
Create a WidgetModel for the given module input.
createModule(Command) - Method in class org.scijava.command.CommandInfo
Instantiates the module described by this module info, around the specified existing command instance.
createModule() - Method in class org.scijava.command.CommandInfo
 
createModule(ModuleInfo) - Method in class org.scijava.module.DefaultModuleService
 
createModule() - Method in interface org.scijava.module.ModuleInfo
Instantiates the module described by this module info.
createModule(ModuleInfo) - Method in interface org.scijava.module.ModuleService
Creates an instance of the given module.
createModule() - Method in interface org.scijava.module.MutableModuleInfo
 
createModule() - Method in class org.scijava.script.ScriptInfo
 
createNonLeaf(ShadowMenu) - Method in class org.scijava.ui.awt.menu.AbstractAWTMenuCreator
 
createNonLeaf(ShadowMenu) - Method in class org.scijava.ui.swing.menu.AbstractSwingMenuCreator
 
createPath(File, String) - Static method in class org.scijava.test.TestUtils
Creates an empty file at the given path, creating intermediate directories as necessary.
createTemporaryDirectory(String) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String, Class<?>) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String, Class<?>, String) - Static method in class org.scijava.test.TestUtils
Makes a temporary directory for use with unit tests.
createTemporaryDirectory(String, String) - Static method in class org.scijava.util.FileUtils
Creates a temporary directory.
createTemporaryDirectory(String, String, File) - Static method in class org.scijava.util.FileUtils
Creates a temporary directory.
createUI() - Method in class org.scijava.ui.AbstractUserInterface
Subclasses override to control UI creation.
createUI() - Method in class org.scijava.ui.awt.AWTUI
 
createUI() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
CRIMSON - Static variable in class org.scijava.util.Colors
 
CustomDrawnTool - Interface in org.scijava.tool
Tools that would like to define how they are drawn implement this interface.
CYAN - Static variable in class org.scijava.util.Colors
 

D

DARKBLUE - Static variable in class org.scijava.util.Colors
 
DARKCYAN - Static variable in class org.scijava.util.Colors
 
DARKGOLDENROD - Static variable in class org.scijava.util.Colors
 
DARKGRAY - Static variable in class org.scijava.util.Colors
 
DARKGREEN - Static variable in class org.scijava.util.Colors
 
DARKGREY - Static variable in class org.scijava.util.Colors
 
DARKKHAKI - Static variable in class org.scijava.util.Colors
 
DARKMAGENTA - Static variable in class org.scijava.util.Colors
 
DARKOLIVEGREEN - Static variable in class org.scijava.util.Colors
 
DARKORANGE - Static variable in class org.scijava.util.Colors
 
DARKORCHID - Static variable in class org.scijava.util.Colors
 
DARKRED - Static variable in class org.scijava.util.Colors
 
DARKSALMON - Static variable in class org.scijava.util.Colors
 
DARKSEAGREEN - Static variable in class org.scijava.util.Colors
 
DARKSLATEBLUE - Static variable in class org.scijava.util.Colors
 
DARKSLATEGRAY - Static variable in class org.scijava.util.Colors
 
DARKSLATEGREY - Static variable in class org.scijava.util.Colors
 
DARKTURQUOISE - Static variable in class org.scijava.util.Colors
 
DARKVIOLET - Static variable in class org.scijava.util.Colors
 
DataHandle<L extends Location> - Interface in org.scijava.io
A data handle is a plugin which provides access to bytes in a data stream (e.g., files or arrays), identified by a Location.
DataHandleInputStream<L extends Location> - Class in org.scijava.io
InputStream backed by a DataHandle.
DataHandleInputStream(DataHandle<L>) - Constructor for class org.scijava.io.DataHandleInputStream
Creates an input stream around the given DataHandle.
DataHandleOutputStream<L extends Location> - Class in org.scijava.io
DataHandleOutputStream(DataHandle<L>) - Constructor for class org.scijava.io.DataHandleOutputStream
Creates an output stream around the given DataHandle.
DataHandleService - Interface in org.scijava.io
Interface for low-level data I/O: reading and writing bytes using DataHandles.
DataOpenedEvent - Class in org.scijava.io.event
An event indicating that data has been opened from a source.
DataOpenedEvent(String, Object) - Constructor for class org.scijava.io.event.DataOpenedEvent
 
DataSavedEvent - Class in org.scijava.io.event
An event indicating that data has been saved to a destination.
DataSavedEvent(String, Object) - Constructor for class org.scijava.io.event.DataSavedEvent
 
DateWidget<U> - Interface in org.scijava.widget
Widget interface for dates.
deactivate() - Method in interface org.scijava.tool.Tool
Informs the tool that it is no longer active.
debug(Object) - Method in class org.scijava.log.AbstractLogService
 
debug(Throwable) - Method in class org.scijava.log.AbstractLogService
 
debug(Object, Throwable) - Method in class org.scijava.log.AbstractLogService
 
DEBUG - Static variable in interface org.scijava.log.LogService
 
debug(Object) - Method in interface org.scijava.log.LogService
 
debug(Throwable) - Method in interface org.scijava.log.LogService
 
debug(Object, Throwable) - Method in interface org.scijava.log.LogService
 
debug(Object) - Method in class org.scijava.log.slf4j.SLF4JLogService
 
debug(Throwable) - Method in class org.scijava.log.slf4j.SLF4JLogService
 
debug(Object, Throwable) - Method in class org.scijava.log.slf4j.SLF4JLogService
 
debug - Variable in class org.scijava.minimaven.BuildEnvironment
 
debug() - Method in class org.scijava.script.ScriptREPL
 
DebugPostprocessor - Class in org.scijava.module.process
A postprocessor plugin that dumps parameter values to the log.
DebugPostprocessor() - Constructor for class org.scijava.module.process.DebugPostprocessor
 
DebugPreprocessor - Class in org.scijava.module.process
A preprocessor plugin that dumps information to the log.
DebugPreprocessor() - Constructor for class org.scijava.module.process.DebugPreprocessor
 
DebugUtils - Class in org.scijava.util
Useful methods for debugging programs.
decide(LoggingEvent) - Method in class org.scijava.config.logback.AbstractLevelsFilter
 
decode(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
 
decode(Object) - Method in class org.scijava.plugins.scripting.jython.JythonScriptLanguage
 
decode(Object) - Method in interface org.scijava.script.ScriptLanguage
Performs any necessary conversion of an encoded object retrieved from the language's script engine.
DEEPPINK - Static variable in class org.scijava.util.Colors
 
DEEPSKYBLUE - Static variable in class org.scijava.util.Colors
 
DEFAULT_BLOCK_SIZE - Static variable in interface org.scijava.io.DataHandle
Default block size to use when searching through the stream.
DEFAULT_SHORTENER_THRESHOLD - Static variable in class org.scijava.util.FileUtils
 
DEFAULT_WEIGHT - Static variable in class org.scijava.MenuEntry
 
DefaultAppEventService - Class in org.scijava.platform
Deprecated.
Use AppService and App instead.
DefaultAppEventService() - Constructor for class org.scijava.platform.DefaultAppEventService
Deprecated.
 
DefaultAppService - Class in org.scijava.app
Default service for application-level functionality.
DefaultAppService() - Constructor for class org.scijava.app.DefaultAppService
 
DefaultCacheService - Class in org.scijava.cache
Trivial CacheService implementation.
DefaultCacheService() - Constructor for class org.scijava.cache.DefaultCacheService
 
DefaultCommandService - Class in org.scijava.command
Default service for working with Commands.
DefaultCommandService() - Constructor for class org.scijava.command.DefaultCommandService
 
DefaultConsoleService - Class in org.scijava.console
Default service for managing interaction with the console.
DefaultConsoleService() - Constructor for class org.scijava.console.DefaultConsoleService
 
DefaultConverter - Class in org.scijava.convert
Default Converter implementation.
DefaultConverter() - Constructor for class org.scijava.convert.DefaultConverter
 
DefaultConvertService - Class in org.scijava.convert
Default ConvertService implementation.
DefaultConvertService() - Constructor for class org.scijava.convert.DefaultConvertService
 
DefaultDataHandleService - Class in org.scijava.io
Default implementation of DataHandleService.
DefaultDataHandleService() - Constructor for class org.scijava.io.DefaultDataHandleService
 
DefaultDisplay - Class in org.scijava.display
Default display for objects, when no other displays are available.
DefaultDisplay() - Constructor for class org.scijava.display.DefaultDisplay
 
DefaultDisplayService - Class in org.scijava.display
Default service for working with Displays.
DefaultDisplayService() - Constructor for class org.scijava.display.DefaultDisplayService
 
DefaultDragAndDropData - Class in org.scijava.ui.dnd
Default implementation of DragAndDropData, which provides a UI-agnostic way to bundle an object together with its MIME type.
DefaultDragAndDropData(Context, MIMEType, Object) - Constructor for class org.scijava.ui.dnd.DefaultDragAndDropData
 
DefaultDragAndDropService - Class in org.scijava.ui.dnd
Default service for handling drag and drop events.
DefaultDragAndDropService() - Constructor for class org.scijava.ui.dnd.DefaultDragAndDropService
 
DefaultEvaluator - Class in org.scijava.parse.eval
An expression evaluator for most standard operators with common built-in types (i.e.: Booleans, Strings and Numbers).
DefaultEvaluator() - Constructor for class org.scijava.parse.eval.DefaultEvaluator
 
DefaultEvaluator(ExpressionParser) - Constructor for class org.scijava.parse.eval.DefaultEvaluator
 
DefaultEventBus - Class in org.scijava.event
An EventService implementation for SciJava.
DefaultEventBus(ThreadService, LogService) - Constructor for class org.scijava.event.DefaultEventBus
 
DefaultEventHistory - Class in org.scijava.event
Default service for keeping a history of SciJava events.
DefaultEventHistory() - Constructor for class org.scijava.event.DefaultEventHistory
 
DefaultEventService - Class in org.scijava.event
Default service for publishing and subscribing to SciJava events.
DefaultEventService() - Constructor for class org.scijava.event.DefaultEventService
 
DefaultInputService - Class in org.scijava.input
Default implementation of InputService.
DefaultInputService() - Constructor for class org.scijava.input.DefaultInputService
 
DefaultIOService - Class in org.scijava.io
Default implementation of IOService.
DefaultIOService() - Constructor for class org.scijava.io.DefaultIOService
 
DefaultJniExtractor - Class in org.scijava.nativelib
JniExtractor suitable for single application deployments per virtual machine
DefaultJniExtractor() - Constructor for class org.scijava.nativelib.DefaultJniExtractor
 
DefaultJniExtractor(Class<?>, String) - Constructor for class org.scijava.nativelib.DefaultJniExtractor
 
DefaultJythonService - Class in org.scijava.plugins.scripting.jython
Default JythonService implementation.
DefaultJythonService() - Constructor for class org.scijava.plugins.scripting.jython.DefaultJythonService
 
DefaultMainService - Class in org.scijava.main
Default implementation of MainService.
DefaultMainService() - Constructor for class org.scijava.main.DefaultMainService
 
DefaultMATLABService - Class in org.scijava.plugins.scripting.matlab
Default MATLABService implementation.
DefaultMATLABService() - Constructor for class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
DefaultMenuService - Class in org.scijava.menu
Default service for keeping track of the application's menu structure.
DefaultMenuService() - Constructor for class org.scijava.menu.DefaultMenuService
 
DefaultModuleService - Class in org.scijava.module
Default service for keeping track of and executing available modules.
DefaultModuleService() - Constructor for class org.scijava.module.DefaultModuleService
 
DefaultMutableModule - Class in org.scijava.module
Default MutableModule implementation, intended for subclassing.
DefaultMutableModule() - Constructor for class org.scijava.module.DefaultMutableModule
 
DefaultMutableModule(MutableModuleInfo) - Constructor for class org.scijava.module.DefaultMutableModule
 
DefaultMutableModuleInfo - Class in org.scijava.module
Default MutableModuleInfo implementation.
DefaultMutableModuleInfo() - Constructor for class org.scijava.module.DefaultMutableModuleInfo
 
DefaultMutableModuleItem<T> - Class in org.scijava.module
Default MutableModuleItem implementation, for use with custom MutableModule implementations.
DefaultMutableModuleItem(Module, String, Class<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
 
DefaultMutableModuleItem(ModuleInfo, String, Class<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
 
DefaultMutableModuleItem(ModuleInfo, ModuleItem<T>) - Constructor for class org.scijava.module.DefaultMutableModuleItem
Creates a new module item with the same values as the given item.
DefaultObjectService - Class in org.scijava.object
Default service for keeping track of registered objects.
DefaultObjectService() - Constructor for class org.scijava.object.DefaultObjectService
 
DefaultOptionsService - Class in org.scijava.options
Default service for keeping track of the available options and their settings.
DefaultOptionsService() - Constructor for class org.scijava.options.DefaultOptionsService
 
DefaultParseService - Class in org.scijava.parse
Default service for parsing strings.
DefaultParseService() - Constructor for class org.scijava.parse.DefaultParseService
 
DefaultPlatform - Class in org.scijava.platform
A platform implementation for default handling of platform issues.
DefaultPlatform() - Constructor for class org.scijava.platform.DefaultPlatform
 
DefaultPlatformService - Class in org.scijava.platform
Default service for handling platform-specific deployment issues.
DefaultPlatformService() - Constructor for class org.scijava.platform.DefaultPlatformService
 
DefaultPluginFinder - Class in org.scijava.plugin
Default SciJava plugin discovery mechanism.
DefaultPluginFinder() - Constructor for class org.scijava.plugin.DefaultPluginFinder
 
DefaultPluginFinder(ClassLoader) - Constructor for class org.scijava.plugin.DefaultPluginFinder
 
DefaultPluginService - Class in org.scijava.plugin
Default service for keeping track of available plugins.
DefaultPluginService() - Constructor for class org.scijava.plugin.DefaultPluginService
 
DefaultPrefService - Class in org.scijava.prefs
Default PrefService implementation, which persists preferences to disk using the Preferences API.
DefaultPrefService() - Constructor for class org.scijava.prefs.DefaultPrefService
 
DefaultRecentFileService - Class in org.scijava.io
Default service for managing the Recently Used Files menu.
DefaultRecentFileService() - Constructor for class org.scijava.io.DefaultRecentFileService
 
DefaultRunService - Class in org.scijava.run
Default service for managing available CodeRunner plugins.
DefaultRunService() - Constructor for class org.scijava.run.DefaultRunService
 
DefaultScriptHeaderService - Class in org.scijava.script
Default ScriptHeaderService implementation.
DefaultScriptHeaderService() - Constructor for class org.scijava.script.DefaultScriptHeaderService
 
DefaultScriptInterpreter - Class in org.scijava.script
The default implementation of a ScriptInterpreter.
DefaultScriptInterpreter(PrefService, ScriptService, ScriptLanguage) - Constructor for class org.scijava.script.DefaultScriptInterpreter
DefaultScriptInterpreter(ScriptLanguage) - Constructor for class org.scijava.script.DefaultScriptInterpreter
Creates a new script interpreter for the given script language.
DefaultScriptInterpreter(ScriptLanguage, ScriptEngine) - Constructor for class org.scijava.script.DefaultScriptInterpreter
Creates a new script interpreter for the given script language, using the specified script engine.
DefaultScriptService - Class in org.scijava.script
Default service for working with scripts.
DefaultScriptService() - Constructor for class org.scijava.script.DefaultScriptService
 
DefaultStatusService - Class in org.scijava.app
Default service for status notifications.
DefaultStatusService() - Constructor for class org.scijava.app.DefaultStatusService
 
DefaultTextDisplay - Class in org.scijava.display
Default display for text.
DefaultTextDisplay() - Constructor for class org.scijava.display.DefaultTextDisplay
 
DefaultTextService - Class in org.scijava.text
Default service for working with text formats.
DefaultTextService() - Constructor for class org.scijava.text.DefaultTextService
 
DefaultThreadService - Class in org.scijava.thread
Default service for managing active threads.
DefaultThreadService() - Constructor for class org.scijava.thread.DefaultThreadService
 
DefaultToolService - Class in org.scijava.tool
Default service for keeping track of available tools, including which tool is active, and delegating UI events to the active tool.
DefaultToolService() - Constructor for class org.scijava.tool.DefaultToolService
 
DefaultUIService - Class in org.scijava.ui
Default service for handling SciJava user interfaces.
DefaultUIService() - Constructor for class org.scijava.ui.DefaultUIService
 
DefaultUncaughtExceptionHandler - Class in org.scijava.log
A handler for otherwise uncaught exceptions.
DefaultUncaughtExceptionHandler(LogService) - Constructor for class org.scijava.log.DefaultUncaughtExceptionHandler
 
defaultValue() - Method in class org.scijava.util.BoolArray
 
defaultValue() - Method in class org.scijava.util.ByteArray
 
defaultValue() - Method in class org.scijava.util.CharArray
 
defaultValue() - Method in class org.scijava.util.DoubleArray
 
defaultValue() - Method in class org.scijava.util.FloatArray
 
defaultValue() - Method in class org.scijava.util.IntArray
 
defaultValue() - Method in class org.scijava.util.LongArray
 
defaultValue() - Method in class org.scijava.util.ObjectArray
 
defaultValue() - Method in interface org.scijava.util.PrimitiveArray
 
defaultValue() - Method in class org.scijava.util.ShortArray
 
DefaultValuePreprocessor - Class in org.scijava.module.process
A preprocessor plugin that populates default parameter values.
DefaultValuePreprocessor() - Constructor for class org.scijava.module.process.DefaultValuePreprocessor
 
DefaultWelcomeService - Class in org.scijava.welcome
Default service for displaying the welcome greeting.
DefaultWelcomeService() - Constructor for class org.scijava.welcome.DefaultWelcomeService
 
DefaultWidgetModel - Class in org.scijava.widget
The backing data model for a particular InputWidget.
DefaultWidgetModel(Context, InputPanel<?, ?>, Module, ModuleItem<?>, List<?>) - Constructor for class org.scijava.widget.DefaultWidgetModel
 
DefaultWidgetService - Class in org.scijava.widget
Default service for managing available InputWidgets.
DefaultWidgetService() - Constructor for class org.scijava.widget.DefaultWidgetService
 
DELAY_IN_MICROSECONDS - Static variable in class org.scijava.util.MirrorWebsite
 
delete(int, int) - Method in class org.scijava.util.AbstractPrimitiveArray
Shifts the array to delete space starting at a specified index.
delete(int, int) - Method in interface org.scijava.util.PrimitiveArray
Shifts the array to delete space starting at a specified index.
deleteRecursively(File) - Static method in class org.scijava.util.FileUtils
Deletes a directory recursively.
dependencies - Variable in class org.scijava.minimaven.MavenProject
 
dependencyManagement - Variable in class org.scijava.minimaven.MavenProject
 
Desktop - Interface in org.scijava.ui
Marker interface for MDI Desktop manager
destClass() - Method in class org.scijava.convert.ConversionRequest
 
destType() - Method in class org.scijava.convert.ConversionRequest
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.awt.AWTUI
 
DialogPrompt - Interface in org.scijava.ui
TODO
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.headless.HeadlessUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in class org.scijava.ui.swing.sdi.SwingSDIUI
 
dialogPrompt(String, String, DialogPrompt.MessageType, DialogPrompt.OptionType) - Method in interface org.scijava.ui.UserInterface
Creates a dialog prompter.
DialogPrompt.MessageType - Enum in org.scijava.ui
 
DialogPrompt.OptionType - Enum in org.scijava.ui
 
DialogPrompt.Result - Enum in org.scijava.ui
 
DialogPromptDemo - Class in org.scijava.ui.swing.commands
A demonstration of SciJava's UI-agnostic dialog prompt capabilities.
DialogPromptDemo() - Constructor for class org.scijava.ui.swing.commands.DialogPromptDemo
 
die(String) - Method in class org.scijava.parse.Position
Throws IllegalArgumentException when syntax is incorrect.
digest(String, byte[]) - Static method in class org.scijava.util.DigestUtils
Gets the given byte array's hash value according to the specified algorithm.
DigestUtils - Class in org.scijava.util
Utility class for computing cryptographic hashes.
DIMGRAY - Static variable in class org.scijava.util.Colors
 
DIMGREY - Static variable in class org.scijava.util.Colors
 
directory - Variable in class org.scijava.minimaven.MavenProject
 
DIRECTORY_STYLE - Static variable in interface org.scijava.widget.FileWidget
Widget style for directory chooser dialogs.
DirectoryIndexer - Class in org.scijava.annotations
Indexes a directory of classes.
DirectoryIndexer() - Constructor for class org.scijava.annotations.DirectoryIndexer
 
discover() - Method in class org.scijava.plugin.PluginIndex
Adds all plugins discovered by the attached PluginFinder to this index, or does nothing if the attached PluginFinder is null.
discoverAnnotations(File, String, ClassLoader) - Method in class org.scijava.annotations.DirectoryIndexer
 
discoverJavac() - Static method in class org.scijava.minimaven.JavaCompiler
 
dispatchToEDT(Runnable) - Static method in class org.scijava.ui.swing.StaticSwingUtils
dispatchToEDTWait(Runnable) - Static method in class org.scijava.ui.swing.StaticSwingUtils
display() - Method in class org.scijava.AbstractGateway
 
display(Object) - Method in class org.scijava.display.AbstractDisplay
 
Display<T> - Interface in org.scijava.display
A display is a particular type of plugin intended to collect objects for visualization.
display(Object) - Method in interface org.scijava.display.Display
Displays the given object in this display.
display() - Method in interface org.scijava.Gateway
Gets this application context's DisplayService.
Displayable - Interface in org.scijava.display
An interface used by classes that can draw on demand.
DisplayActivatedEvent - Class in org.scijava.display.event
An event indicating a display has become the active one.
DisplayActivatedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayActivatedEvent
 
DisplayCreatedEvent - Class in org.scijava.display.event
An event indicating a new display has been created.
DisplayCreatedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayCreatedEvent
 
DisplayDeletedEvent - Class in org.scijava.display.event
An event indicating a display has been deleted.
DisplayDeletedEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayDeletedEvent
 
DisplayEvent - Class in org.scijava.display.event
An event indicating something has happened to a Display.
DisplayEvent(Display<?>) - Constructor for class org.scijava.display.event.DisplayEvent
 
DisplayPanel - Interface in org.scijava.ui.viewer
The panel housing a particular Display.
DisplayPostprocessor - Class in org.scijava.display
Displays outputs upon completion of a module execution.
DisplayPostprocessor() - Constructor for class org.scijava.display.DisplayPostprocessor
 
DisplayService - Interface in org.scijava.display
Interface for service that tracks available Displays.
DisplayUpdatedEvent - Class in org.scijava.display.event
An event indicating a display has updated; e.g., an object has been added or removed.
DisplayUpdatedEvent(Display<?>, DisplayUpdatedEvent.DisplayUpdateLevel) - Constructor for class org.scijava.display.event.DisplayUpdatedEvent
 
DisplayUpdatedEvent.DisplayUpdateLevel - Enum in org.scijava.display.event
The display update level gives a hint about how much work needs to be done during the update.
DisplayViewer<T> - Interface in org.scijava.ui.viewer
A display viewer is a UI widget that shows a display to a user.
displayWelcome() - Method in class org.scijava.welcome.DefaultWelcomeService
 
displayWelcome() - Method in interface org.scijava.welcome.WelcomeService
Displays the welcome greeting.
DisplayWindow - Interface in org.scijava.ui.viewer
A user interface window associated with a Display, containing a DisplayPanel.
Disposable - Interface in org.scijava
An object that knows how to clean up after itself.
dispose() - Method in class org.scijava.console.DefaultConsoleService
 
dispose() - Method in class org.scijava.Context
 
dispose() - Method in interface org.scijava.Disposable
Performs any needed cleanup of the object's services, in preparation for the object being retired (e.g., to make garbage collection possible).
dispose() - Method in class org.scijava.event.DefaultEventService
 
dispose() - Method in class org.scijava.platform.DefaultPlatformService
 
dispose() - Method in class org.scijava.plugins.platforms.osx.OSXPlatform
 
dispose() - Method in class org.scijava.plugins.scripting.jython.DefaultJythonService
 
dispose() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
dispose() - Method in class org.scijava.thread.DefaultThreadService
 
dispose() - Method in class org.scijava.ui.awt.AWTUI
 
dispose() - Method in class org.scijava.ui.DefaultUIService
 
dispose() - Method in class org.scijava.ui.headless.HeadlessUI
 
dispose() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
dispose() - Method in interface org.scijava.ui.viewer.DisplayViewer
 
div(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(int, int) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(long, long) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(float, float) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(double, double) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(BigInteger, BigInteger) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(BigDecimal, BigDecimal) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
div(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DIV operator.
DIV - Static variable in class org.scijava.parse.Operators
 
DIV_ASSIGN - Static variable in class org.scijava.parse.Operators
 
divAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
divAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DIV_ASSIGN operator.
DocumentSizeFilter - Class in org.scijava.ui.swing.widget
A DocumentFilter that limits maximum number of characters.
DocumentSizeFilter(int) - Constructor for class org.scijava.ui.swing.widget.DocumentSizeFilter
 
DODGERBLUE - Static variable in class org.scijava.util.Colors
 
done - Variable in class org.scijava.util.ReadInto
 
done() - Method in class org.scijava.util.ReadInto
 
doRefresh() - Method in class org.scijava.ui.AbstractUIInputWidget
Performs the intended AbstractUIInputWidget.refreshWidget() operation.
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTButtonWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTChoiceWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTObjectWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTTextWidget
 
doRefresh() - Method in class org.scijava.ui.awt.widget.AWTToggleWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingButtonWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
doRefresh() - Method in class org.scijava.ui.swing.widget.SwingToggleWidget
 
dot(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dot(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT operator.
DOT - Static variable in class org.scijava.parse.Operators
 
DOT_DIV - Static variable in class org.scijava.parse.Operators
 
DOT_DIV_ASSIGN - Static variable in class org.scijava.parse.Operators
 
DOT_MUL - Static variable in class org.scijava.parse.Operators
 
DOT_POW - Static variable in class org.scijava.parse.Operators
 
DOT_POW_ASSIGN - Static variable in class org.scijava.parse.Operators
 
DOT_RIGHT_DIV - Static variable in class org.scijava.parse.Operators
 
DOT_RIGHT_DIV_ASSIGN - Static variable in class org.scijava.parse.Operators
 
DOT_TRANSPOSE - Static variable in class org.scijava.parse.Operators
 
dotDiv(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotDiv(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_DIV operator.
dotDivAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
dotDivAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_DIV_ASSIGN operator.
dotMul(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotMul(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_MUL operator.
dotPow(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotPow(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_POW operator.
dotPowAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
dotPowAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_POW_ASSIGN operator.
dotRightDiv(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotRightDiv(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_RIGHT_DIV operator.
dotRightDivAssign(Object, Object) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
dotRightDivAssign(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_RIGHT_DIV_ASSIGN operator.
dotTranspose(Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
dotTranspose(Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.DOT_TRANSPOSE operator.
DoubleArray - Class in org.scijava.util
An extensible array of double elements.
DoubleArray() - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by a fixed-size array.
DoubleArray(int) - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by a fixed-size array.
DoubleArray(double[]) - Constructor for class org.scijava.util.DoubleArray
Constructs an extensible array of doubles, backed by the given fixed-size array.
DoubleArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper
 
DoubleArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.DoubleArrayWrapper
 
DoubleToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.DoubleToBigDecimalConverter
 
download(URL, File, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
download(URL, File, String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
download() - Method in class org.scijava.minimaven.MavenProject
 
download(Coordinate, boolean) - Method in class org.scijava.minimaven.MavenProject
 
downloadAndVerify(String, Coordinate, boolean) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAndVerify(String, File, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAndVerify(String, File, String, String) - Method in class org.scijava.minimaven.BuildEnvironment
 
downloadAutomatically - Variable in class org.scijava.minimaven.BuildEnvironment
 
downloadDependencies() - Method in class org.scijava.minimaven.MavenProject
 
downOctave() - Method in class org.scijava.util.TunePlayer
 
DragAndDropData - Interface in org.scijava.ui.dnd
Interface for drag-and-drop data.
DragAndDropEvent - Class in org.scijava.ui.dnd.event
An event indicating drag-and-drop activity in a display.
DragAndDropEvent(Display<?>) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropEvent(Display<?>, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragAndDropEvent
 
DragAndDropHandler<D> - Interface in org.scijava.ui.dnd
Interface for drag-and-drop handlers.
DragAndDropService - Interface in org.scijava.ui.dnd
Interface for service that handles drag and drop events.
dragEnter(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragEnterEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged onto a display.
DragEnterEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragEnterEvent
 
dragExit(DropTargetEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragExitEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged off of a display.
DragExitEvent(Display<?>) - Constructor for class org.scijava.ui.dnd.event.DragExitEvent
 
dragOver(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
DragOverEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dragged within a display.
DragOverEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DragOverEvent
 
draw() - Method in interface org.scijava.display.Displayable
Render self when called.
drawIcon() - Method in interface org.scijava.tool.CustomDrawnTool
 
drop(DropTargetDropEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
drop(D, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data object in the specified Display.
drop(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Performs a drag-and-drop operation in the given display with the specified DragAndDropData, using the first available compatible handler.
drop(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Performs a drag-and-drop operation in the given display with the specified data object, using the first available compatible handler.
drop(File, Display<?>) - Method in class org.scijava.ui.dnd.FileDragAndDropHandler
 
drop(List<?>, Display<?>) - Method in class org.scijava.ui.dnd.ListDragAndDropHandler
 
drop(File, Display<?>) - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler
 
dropActionChanged(DropTargetDragEvent) - Method in class org.scijava.ui.awt.AWTDropTargetEventDispatcher
 
dropData(DragAndDropData, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
dropData(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data in the specified Display.
DropEvent - Class in org.scijava.ui.dnd.event
An event indicating an object was dropped onto a display.
DropEvent(Display<?>, InputModifiers, int, int, DragAndDropData) - Constructor for class org.scijava.ui.dnd.event.DropEvent
 
dropObject(Object, Display<?>) - Method in class org.scijava.ui.dnd.AbstractDragAndDropHandler
 
dropObject(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropHandler
Performs a drop operation with the given data in the specified Display.
DummyTool - Class in org.scijava.tool
A tool that does nothing.
DummyTool() - Constructor for class org.scijava.tool.DummyTool
 
DumpStack - Class in org.scijava.plugins.commands.debug
Provides a complete stack dump of all threads.
DumpStack() - Constructor for class org.scijava.plugins.commands.debug.DumpStack
 
DynamicCommand - Class in org.scijava.command
A command with a variable number of inputs and outputs.
DynamicCommand() - Constructor for class org.scijava.command.DynamicCommand
 
DynamicCommandInfo - Class in org.scijava.command
Helper class for maintaining a DynamicCommand's associated ModuleInfo.
DynamicCommandInfo(CommandInfo, Class<? extends DynamicCommand>) - Constructor for class org.scijava.command.DynamicCommandInfo
 

E

EclipseHelper - Class in org.scijava.annotations
Helps Eclipse's lack of support for annotation processing in incremental build mode.
EclipseHelper() - Constructor for class org.scijava.annotations.EclipseHelper
 
EDIT_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
EDIT_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
EDIT_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
elements(String) - Method in class org.scijava.util.XML
Obtains the elements identified by the given XPath expression.
elements(NodeList) - Static method in class org.scijava.util.XML
Gets the element nodes from the given node list.
elements(Element, String) - Static method in class org.scijava.util.XML
Gets the given element's specified child elements.
endElement(String, String, String) - Method in class org.scijava.minimaven.AbstractPOMHandler
 
endLine - Variable in class org.scijava.minimaven.BuildEnvironment
 
engineScopeBindings - Variable in class org.scijava.script.AbstractScriptEngine
 
ensure(int) - Method in class org.scijava.util.LineOutputStream
Increases the size of the line buffer if necessary.
ensureCapacity(int) - Method in class org.scijava.util.AbstractPrimitiveArray
 
ensureCapacity(int) - Method in interface org.scijava.util.PrimitiveArray
Makes sure the backing array at least a specified capacity.
ensureCapacity(int) - Method in class org.scijava.util.SizableArrayList
 
ensureSizeReasonable(Window) - Static method in class org.scijava.ui.awt.AWTWindows
Limits the size of the given window to fit onscreen.
entrySet() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.jython.JythonBindings
 
entrySet() - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
env - Variable in class org.scijava.minimaven.MavenProject
 
equal(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
equal(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.EQUAL operator.
EQUAL - Static variable in class org.scijava.parse.Operators
 
equal(Object, Object) - Static method in class org.scijava.util.MiscUtils
Deprecated.
equals(Object) - Method in class org.scijava.input.Accelerator
 
equals(Object) - Method in class org.scijava.input.InputModifiers
 
equals(Object) - Method in class org.scijava.minimaven.MavenProject
 
equals(Object) - Method in class org.scijava.parse.SyntaxTree
 
equals(Object) - Method in class org.scijava.ui.dnd.MIMEType
 
equals(Object) - Method in class org.scijava.util.ColorRGB
 
equals(Object) - Method in class org.scijava.util.IntCoords
 
equals(Object) - Method in class org.scijava.util.IntRect
 
equals(Object) - Method in class org.scijava.util.RealCoords
 
equals(Object) - Method in class org.scijava.util.RealRect
 
err - Variable in class org.scijava.minimaven.BuildEnvironment
 
err - Variable in class org.scijava.minimaven.JavaCompiler
 
err - Variable in class org.scijava.minimaven.ReadInto
 
error(Object) - Method in class org.scijava.log.AbstractLogService
 
error(Throwable) - Method in class org.scijava.log.AbstractLogService
 
error(Object, Throwable) - Method in class org.scijava.log.AbstractLogService
 
ERROR - Static variable in interface org.scijava.log.LogService
 
error(Object) - Method in interface org.scijava.log.LogService
 
error(Throwable) - Method in interface org.scijava.log.LogService
 
error(Object, Throwable) - Method in interface org.scijava.log.LogService
 
error(Object) - Method in class org.scijava.log.slf4j.SLF4JLogService
 
error(Throwable) - Method in class org.scijava.log.slf4j.SLF4JLogService
 
error(Object, Throwable) - Method in class org.scijava.log.slf4j.SLF4JLogService
 
errorWriter - Variable in class org.scijava.script.AbstractScriptContext
 
eval(String) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptEngine
 
eval(String) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptEngine
 
eval(ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyCompiledScript
 
eval(Reader, ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
eval(String) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
eval(Reader) - Method in class org.scijava.plugins.scripting.java.JavaEngine
Compiles and runs the specified .java class.
eval(String) - Method in class org.scijava.plugins.scripting.jython.JythonScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.jython.JythonScriptEngine
 
eval(String) - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptEngine
 
eval(Reader) - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptEngine
 
eval(String) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader, ScriptContext) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, Bindings) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(Reader, Bindings) - Method in class org.scijava.script.AbstractScriptEngine
 
eval(String, ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader, ScriptContext) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String, Bindings) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(Reader, Bindings) - Method in class org.scijava.script.AdaptedScriptEngine
 
eval(String) - Method in class org.scijava.script.DefaultScriptInterpreter
 
eval(String) - Method in interface org.scijava.script.ScriptInterpreter
Evaluates a command.
evaluate(SyntaxTree) - Method in class org.scijava.parse.eval.AbstractEvaluator
 
evaluate(String) - Method in class org.scijava.parse.eval.AbstractEvaluator
 
evaluate(LinkedList<Object>) - Method in class org.scijava.parse.eval.AbstractStackEvaluator
 
evaluate(String) - Method in interface org.scijava.parse.eval.Evaluator
Evaluates the given infix expression, returning the result.
evaluate(LinkedList<Object>) - Method in interface org.scijava.parse.eval.Evaluator
Evaluates the given postfix token queue, returning the result.
evaluate(SyntaxTree) - Method in interface org.scijava.parse.eval.Evaluator
Evaluates the given syntax tree, returning the result.
evaluate(String) - Method in class org.scijava.script.ScriptREPL
Evaluates the line, including handling of special colon-prefixed REPL commands.
Evaluator - Interface in org.scijava.parse.eval
Interface for expression evaluators.
EvaluatorConsole - Class in org.scijava.parse.eval
A simple console-driven expression evaluator.
EvaluatorConsole() - Constructor for class org.scijava.parse.eval.EvaluatorConsole
 
EvaluatorConsole(Evaluator) - Constructor for class org.scijava.parse.eval.EvaluatorConsole
 
event() - Method in class org.scijava.AbstractGateway
 
event() - Method in interface org.scijava.Gateway
Gets this application context's EventService.
EventDetails - Class in org.scijava.event
Caches details of a particular SciJavaEvent, without saving the event itself (since doing so could leave dangling references).
EventDetails(SciJavaEvent) - Constructor for class org.scijava.event.EventDetails
 
EventHandler - Annotation Type in org.scijava.event
Annotation identifying an event handler method.
eventHistory() - Method in class org.scijava.AbstractGateway
 
EventHistory - Interface in org.scijava.event
Interface for service that keeps a history of SciJava events.
eventHistory() - Method in interface org.scijava.Gateway
Gets this application context's EventHistory.
EventHistoryListener - Interface in org.scijava.event
Listener for event history changes.
eventOccurred(EventDetails) - Method in interface org.scijava.event.EventHistoryListener
 
eventOccurred(EventDetails) - Method in class org.scijava.ui.swing.commands.WatchEvents
 
eventService() - Method in interface org.scijava.command.CommandService
 
eventService() - Method in class org.scijava.command.DefaultCommandService
 
eventService() - Method in class org.scijava.display.DefaultDisplayService
 
eventService() - Method in interface org.scijava.display.DisplayService
 
EventService - Interface in org.scijava.event
Interface for the event handling service.
eventService() - Method in class org.scijava.input.DefaultInputService
 
eventService() - Method in interface org.scijava.input.InputService
 
eventService() - Method in class org.scijava.object.DefaultObjectService
 
eventService() - Method in interface org.scijava.object.ObjectService
 
eventService - Variable in class org.scijava.options.OptionsPlugin
 
eventService() - Method in class org.scijava.platform.DefaultPlatformService
 
eventService() - Method in interface org.scijava.platform.PlatformService
 
EventSubscriber<E extends SciJavaEvent> - Interface in org.scijava.event
Interface for subscribers that wish to be notified of SciJava events.
excludedFromMultiProjects - Variable in class org.scijava.minimaven.BuildEnvironment
 
excludeFromMultiProjects(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
exclusions - Variable in class org.scijava.minimaven.Coordinate
 
exec() - Method in interface org.scijava.main.MainService.Main
Runs the main method with the associated arguments.
exec(File, String...) - Method in class org.scijava.minimaven.BuildEnvironment
 
exec(String...) - Method in class org.scijava.platform.DefaultPlatformService
 
exec(String...) - Method in interface org.scijava.platform.PlatformService
Executes a native program and waits for it to return.
exec(File, PrintStream, PrintStream, String...) - Static method in class org.scijava.util.ProcessUtils
Executes a program.
exec(File, InputStream, PrintStream, PrintStream, String...) - Static method in class org.scijava.util.ProcessUtils
Executes a program.
exec(String) - Method in class org.scijava.util.ReflectedUniverse
Executes a command in the universe.
execMains() - Method in class org.scijava.main.DefaultMainService
 
execMains() - Method in interface org.scijava.main.MainService
Executes registered main classes, in the order they were registered.
execute(String[], File, boolean) - Method in class org.scijava.minimaven.JavaCompiler
 
execute(Object, Object...) - Method in class org.scijava.module.MethodRef
 
execute(Operator, Deque<Object>) - Method in class org.scijava.parse.eval.AbstractStandardStackEvaluator
 
execute(Operator, Deque<Object>) - Method in interface org.scijava.parse.eval.StackEvaluator
Executes the given operation with the specified value stack.
expand(Coordinate) - Method in class org.scijava.minimaven.MavenProject
 
expand(String) - Method in class org.scijava.minimaven.MavenProject
 
ExpressionParser - Class in org.scijava.parse
A parser for mathematical expressions, using Dijkstra's famous shunting-yard algorithm.
ExpressionParser() - Constructor for class org.scijava.parse.ExpressionParser
Creates an expression parser with the default set of operators.
ExpressionParser(Collection<? extends Operator>) - Constructor for class org.scijava.parse.ExpressionParser
Creates an expression parser with the given set of operators.
extractJni(String, String) - Method in class org.scijava.nativelib.BaseJniExtractor
Extract a JNI library from the classpath to a temporary file.
extractJni(String, String) - Method in interface org.scijava.nativelib.JniExtractor
Extract a JNI library from the classpath to a temporary file.
extractRegistered() - Method in class org.scijava.nativelib.BaseJniExtractor
Extract all libraries which are registered for auto-extraction to files in the temporary directory.
extractRegistered() - Method in interface org.scijava.nativelib.JniExtractor
Extract all libraries which are registered for auto-extraction to files in the temporary directory.
extractRegistered() - Static method in class org.scijava.nativelib.NativeLoader
Extract all libraries registered for auto-extraction by way of META-INF/lib/AUTOEXTRACT.LIST resources.

F

fail(String) - Method in class org.scijava.parse.Position
Throws IllegalStateException when something is wrong.
fakePOM(File, Coordinate) - Method in class org.scijava.minimaven.BuildEnvironment
 
FIELD_STYLE - Static variable in interface org.scijava.widget.TextWidget
Widget style for text fields.
file2pom - Variable in class org.scijava.minimaven.BuildEnvironment
 
FILE_LABEL - Static variable in class org.scijava.menu.MenuConstants
 
FILE_MNEMONIC - Static variable in class org.scijava.menu.MenuConstants
 
FILE_NAME - Static variable in class org.scijava.util.CheckSezpoz
Deprecated.
FILE_WEIGHT - Static variable in class org.scijava.menu.MenuConstants
 
FileDragAndDropHandler - Class in org.scijava.ui.dnd
Drag-and-drop handler for files.
FileDragAndDropHandler() - Constructor for class org.scijava.ui.dnd.FileDragAndDropHandler
 
FileHandle - Class in org.scijava.io
FileHandle() - Constructor for class org.scijava.io.FileHandle
 
FileLocation - Class in org.scijava.io
Location backed by a File on disk.
FileLocation(File) - Constructor for class org.scijava.io.FileLocation
 
FileLocation(String) - Constructor for class org.scijava.io.FileLocation
 
FilePreprocessor - Class in org.scijava.ui
A preprocessor plugin that handles single unresolved parameters of type File using a UI prompt.
FilePreprocessor() - Constructor for class org.scijava.ui.FilePreprocessor
 
FileUtils - Class in org.scijava.util
Useful methods for working with file paths.
FileWidget<U> - Interface in org.scijava.widget
Widget interface for file selectors.
filterInstances(List<Platform>) - Method in class org.scijava.platform.DefaultPlatformService
 
filterInstances(List<PT>) - Method in interface org.scijava.plugin.SingletonService
Filters the given list of instances by this service's inclusion criteria.
finalize() - Method in class org.scijava.nativelib.WebappJniExtractor
 
find(DT) - Method in interface org.scijava.plugin.TypedService
Gets a new instance of the highest priority plugin managed by this service which supports the given data object according to the Typed interface.
findDisplayContentScreenX() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
findDisplayContentScreenX() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
findDisplayContentScreenX() - Method in interface org.scijava.ui.viewer.DisplayWindow
Finds the x coordinate on the screen of the origin of the display window's content.
findDisplayContentScreenY() - Method in class org.scijava.ui.swing.mdi.viewer.SwingMdiDisplayWindow
 
findDisplayContentScreenY() - Method in class org.scijava.ui.swing.viewer.SwingDisplayWindow
 
findDisplayContentScreenY() - Method in interface org.scijava.ui.viewer.DisplayWindow
Finds the y coordinate on the screen of the origin of the display window's content.
findInMultiProjects(Coordinate) - Method in class org.scijava.minimaven.MavenProject
 
findLocallyCachedVersion(String) - Method in class org.scijava.minimaven.MavenProject
 
findPlugins(List<PluginInfo<?>>) - Method in class org.scijava.plugin.DefaultPluginFinder
 
findPlugins(List<PluginInfo<?>>) - Method in interface org.scijava.plugin.PluginFinder
Populates the given list with all available SciJava plugins.
findPluginsOfClass(String, List<? extends PluginInfo<?>>, List<T>) - Static method in class org.scijava.plugin.DefaultPluginService
Transfers plugins of the given class from the source list to the destination list.
findPOM(Coordinate, boolean, boolean) - Method in class org.scijava.minimaven.MavenProject
 
findPOM(MavenProject, String) - Static method in class org.scijava.minimaven.MiniMaven
 
findResources(String, String, File) - Static method in class org.scijava.util.FileUtils
Finds URLs of available resources.
findResources(String, Iterable<URL>) - Static method in class org.scijava.util.FileUtils
Finds URLs of resources known to the system.
findScripts(List<ScriptInfo>) - Method in class org.scijava.script.ScriptFinder
Discovers the scripts.
findString(String...) - Method in interface org.scijava.io.DataHandle
Reads a string ending with one of the given terminating substrings.
findString(boolean, String...) - Method in interface org.scijava.io.DataHandle
Reads or skips a string ending with one of the given terminating substrings.
findString(int, String...) - Method in interface org.scijava.io.DataHandle
Reads a string ending with one of the given terminating substrings, using the specified block size for buffering.
findString(boolean, int, String...) - Method in interface org.scijava.io.DataHandle
Reads or skips a string ending with one of the given terminating substrings, using the specified block size for buffering.
findUltimateParent(Component) - Method in class org.scijava.ui.swing.StaticSwingUtils
 
FIREBRICK - Static variable in class org.scijava.util.Colors
 
first(List<T>) - Static method in class org.scijava.util.ListUtils
Gets the first element of the given list, or null if none.
FIRST_PRIORITY - Static variable in class org.scijava.Priority
Priority for items that must be sorted first.
firstNonDigit(String) - Static method in class org.scijava.minimaven.BuildEnvironment
 
fix(File, File) - Static method in class org.scijava.util.CheckSezpoz
Deprecated.
FloatArray - Class in org.scijava.util
An extensible array of float elements.
FloatArray() - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by a fixed-size array.
FloatArray(int) - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by a fixed-size array.
FloatArray(float[]) - Constructor for class org.scijava.util.FloatArray
Constructs an extensible array of floats, backed by the given fixed-size array.
FloatArrayUnwrapper() - Constructor for class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper
 
FloatArrayWrapper() - Constructor for class org.scijava.convert.ArrayConverters.FloatArrayWrapper
 
FloatToBigDecimalConverter() - Constructor for class org.scijava.convert.NumberConverters.FloatToBigDecimalConverter
 
FloatToDoubleConverter() - Constructor for class org.scijava.convert.NumberConverters.FloatToDoubleConverter
 
FLORALWHITE - Static variable in class org.scijava.util.Colors
 
flush() - Method in class org.scijava.console.MultiOutputStream
 
flush() - Method in class org.scijava.io.DataHandleOutputStream
 
flush() - Method in class org.scijava.util.LineOutputStream
If any bytes are in the current line buffer, output the line via LineOutputStream.println(String), stripping any trailing new-line characters.
forceLoadClass(String) - Method in class org.scijava.minimaven.JarClassLoader
 
FORESTGREEN - Static variable in class org.scijava.util.Colors
 
format(double) - Static method in class org.scijava.util.UnitUtils
 
foundAnnotations() - Method in class org.scijava.annotations.AbstractIndexWriter
 
fromDouble(double, boolean) - Static method in class org.scijava.util.Bytes
Translates the double value into an array of eight bytes.
fromDoubles(double[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of double values into an array of byte values.
fromFloat(float, boolean) - Static method in class org.scijava.util.Bytes
Translates the float value into an array of four bytes.
fromFloats(float[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of float values into an array of byte values.
fromHSVColor(double, double, double) - Static method in class org.scijava.util.ColorRGB
 
fromHTMLColor(String) - Static method in class org.scijava.util.ColorRGB
Convert a string in the format specified by CSS Color Module Level 3 - W3C Recommendation 07 June 2011 to a ColorRGB object.
fromInt(int, boolean) - Static method in class org.scijava.util.Bytes
Translates the int value into an array of four bytes.
fromInts(int[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of int values into an array of byte values.
fromLong(long, boolean) - Static method in class org.scijava.util.Bytes
Translates the long value into an array of eight bytes.
fromLongs(long[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of long values into an array of byte values.
fromShort(short, boolean) - Static method in class org.scijava.util.Bytes
Translates the short value into an array of two bytes.
fromShorts(short[], boolean) - Static method in class org.scijava.util.Bytes
Translates an array of short values into an array of byte values.
FUCHSIA - Static variable in class org.scijava.util.Colors
 
function(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
function(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Function operator.
Function - Class in org.scijava.parse
A function is an implicit binary operator between two "noun" tokens—typically between a variable on the left and a group on the right, in which case the function's precedence is inferred from the group.
Function(double) - Constructor for class org.scijava.parse.Function
 

G

GAINSBORO - Static variable in class org.scijava.util.Colors
 
Gateway - Interface in org.scijava
Interface for convenience classes that wrap a Context to provide one-line access to a suite of Services.
GatewayPreprocessor - Class in org.scijava.module.process
The gateway preprocessor automatically populates module inputs that implement Gateway.
GatewayPreprocessor() - Constructor for class org.scijava.module.process.GatewayPreprocessor
 
GenericUtils - Class in org.scijava.util
Useful methods for working with Type objects, particularly generic types.
get(String) - Method in class org.scijava.AbstractBasicDetails
 
get(Class<S>) - Method in class org.scijava.AbstractGateway
 
get(String) - Method in class org.scijava.AbstractGateway
 
get(String) - Method in interface org.scijava.BasicDetails
Gets the value of the given key, or null if undefined.
get(Object) - Method in interface org.scijava.cache.CacheService
 
get(Object, Callable<V>) - Method in interface org.scijava.cache.CacheService
 
get(Object) - Method in class org.scijava.cache.DefaultCacheService
 
get(String) - Method in class org.scijava.command.CommandModuleItem
 
get(int) - Method in class org.scijava.display.AbstractDisplay
 
get(Class<S>) - Method in interface org.scijava.Gateway
Returns an implementation of the requested Service, if it exists in the underlying Context.
get(String) - Method in interface org.scijava.Gateway
Returns an implementation of the Service with the given class name, if it exists in the underlying Context.
get(int) - Static method in enum org.scijava.input.KeyCode
Gets the KeyCode corresponding to the given numeric code, or KeyCode.UNDEFINED if no such code.
get(String) - Static method in enum org.scijava.input.KeyCode
Gets the KeyCode with the given name, or KeyCode.UNDEFINED if no such code.
get() - Method in interface org.scijava.object.LazyObjects
Gets the collection of objects.
get(Class<?>) - Method in class org.scijava.object.ObjectIndex
Gets a list of registered objects compatible with the given type.
get(Variable) - Method in class org.scijava.parse.eval.AbstractEvaluator
 
get(Variable) - Method in interface org.scijava.parse.eval.Evaluator
Gets the value of the given variable.
get() - Method in class org.scijava.parse.Position
 
get() - Method in class org.scijava.plugin.AbstractWrapperPlugin
 
get() - Method in interface org.scijava.plugin.WrapperPlugin
Gets the data object currently associated with this plugin.
get(Object) - Method in class org.scijava.plugins.scripting.beanshell.BeanshellBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.clojure.ClojureBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.java.JavaEngineBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.jython.JythonBindings
 
get(Object) - Method in class org.scijava.plugins.scripting.matlab.MATLABBindings
 
get(String) - Method in class org.scijava.prefs.DefaultPrefService
 
get(String, String) - Method in class org.scijava.prefs.DefaultPrefService
 
get(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
get(Class<?>, String, String) - Method in class org.scijava.prefs.DefaultPrefService
 
get(String) - Method in interface org.scijava.prefs.PrefService
 
get(String, String) - Method in interface org.scijava.prefs.PrefService
 
get(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
 
get(Class<?>, String, String) - Method in interface org.scijava.prefs.PrefService
 
get(String) - Method in class org.scijava.script.AbstractScriptEngine
 
get(String) - Method in class org.scijava.script.AdaptedScriptEngine
 
get(int) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
get(int) - Method in class org.scijava.util.BoolArray
 
get(int) - Method in class org.scijava.util.ByteArray
 
get(int) - Method in class org.scijava.util.CharArray
 
get(int) - Method in class org.scijava.util.DoubleArray
 
get(int) - Method in class org.scijava.util.FloatArray
 
get(int) - Method in class org.scijava.util.IntArray
 
get(int) - Method in class org.scijava.util.LastRecentlyUsed
Returns the entry for the given index.
get(int) - Method in class org.scijava.util.LongArray
 
get(String) - Method in class org.scijava.util.Manifest
 
get(int) - Method in class org.scijava.util.ObjectArray
 
get(String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(String, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(Class<?>, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(Class<?>, String, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
get(int) - Method in class org.scijava.util.ShortArray
 
get() - Method in class org.scijava.widget.AbstractInputWidget
 
get() - Method in interface org.scijava.widget.InputWidget
Gets the model object backing this widget.
getAbbreviatedByteLabel(double) - Static method in class org.scijava.util.UnitUtils
 
getAccelerator() - Method in class org.scijava.display.event.input.KyEvent
Converts the key event into a corresponding accelerator.
getAccelerator() - Method in class org.scijava.MenuEntry
 
getActiveDisplay() - Method in class org.scijava.display.DefaultDisplayService
 
getActiveDisplay(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getActiveDisplay() - Method in interface org.scijava.display.DisplayService
Gets the currently active display (of any Display type).
getActiveDisplay(Class<D>) - Method in interface org.scijava.display.DisplayService
Gets the most recently active display (of the specified Display type).
getActiveTool() - Method in class org.scijava.tool.DefaultToolService
 
getActiveTool() - Method in interface org.scijava.tool.ToolService
 
getAll() - Method in class org.scijava.object.ObjectIndex
Gets a list of all registered objects.
getAll() - Method in class org.scijava.util.Manifest
 
getAllPOMs() - Static method in class org.scijava.util.POM
Gets all available Maven POMs on the class path.
getAllVersions(File, String) - Static method in class org.scijava.util.FileUtils
Lists all versions of a given (possibly versioned) file name.
getAlpha(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getAlpha() - Method in class org.scijava.util.ColorRGB
 
getAlpha() - Method in class org.scijava.util.ColorRGBA
 
getAlwaysActiveTools() - Method in class org.scijava.tool.DefaultToolService
 
getAlwaysActiveTools() - Method in interface org.scijava.tool.ToolService
 
getAnnotatedFields(Class<?>, Class<A>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Fields marked with the annotation of the specified class.
getAnnotatedFields(Class<?>, Class<A>, List<Field>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Fields marked with the annotation of the specified class.
getAnnotatedMethods(Class<?>, Class<A>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Methods marked with the annotation of the specified class.
getAnnotatedMethods(Class<?>, Class<A>, List<Method>) - Static method in class org.scijava.util.ClassUtils
Gets the given class's Methods marked with the annotation of the specified class.
getAnnotation() - Method in class org.scijava.plugin.PluginInfo
Gets the associated @Plugin annotation.
getAnnotationFiles() - Method in class org.scijava.annotations.AnnotationCombiner
Scans for annotations files in every resource on the classpath.
getAnnotationFiles() - Method in class org.scijava.util.CombineAnnotations
Deprecated.
getApp() - Method in class org.scijava.AbstractGateway
 
getApp() - Method in interface org.scijava.app.AppService
Gets the foremost application (the one with the highest priority).
getApp(String) - Method in interface org.scijava.app.AppService
Gets an application by name.
getApp(String) - Method in class org.scijava.app.DefaultAppService
 
getApp() - Method in interface org.scijava.Gateway
 
getAppEventService() - Method in class org.scijava.platform.DefaultPlatformService
 
getAppEventService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
Use AppService and App instead.
getApplicationFrame() - Method in class org.scijava.ui.awt.AWTUI
 
getApplicationFrame() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getApplicationFrame() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava application frame, or null if not applicable.
getApps() - Method in interface org.scijava.app.AppService
Gets the table of associated applications, keyed by name.
getApps() - Method in class org.scijava.app.DefaultAppService
 
getArchitecture() - Static method in class org.scijava.nativelib.NativeLibraryUtil
Determines the underlying hardware platform and architecture.
getArchiverVersion() - Method in class org.scijava.util.Manifest
 
getARGB(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getARGB() - Method in class org.scijava.util.ColorRGB
Gets the color as a packed integer, 8 bits per color component.
getArity() - Method in class org.scijava.parse.Group
 
getArity() - Method in class org.scijava.parse.Operator
1 for unary, 2 for binary, etc.
getArrangement() - Method in interface org.scijava.ui.Arrangeable
 
getArrangement() - Method in class org.scijava.ui.swing.mdi.JMDIDesktopPane
 
getArray() - Method in class org.scijava.util.BoolArray
 
getArray() - Method in class org.scijava.util.ByteArray
 
getArray() - Method in class org.scijava.util.CharArray
 
getArray() - Method in class org.scijava.util.DoubleArray
 
getArray() - Method in class org.scijava.util.FloatArray
 
getArray() - Method in class org.scijava.util.IntArray
 
getArray() - Method in class org.scijava.util.LongArray
 
getArray() - Method in class org.scijava.util.ObjectArray
 
getArray() - Method in interface org.scijava.util.PrimitiveArray
Gets the fixed-size array backing this instance.
getArray() - Method in class org.scijava.util.ShortArray
 
getArrayClass(Class<?>) - Static method in class org.scijava.util.ClassUtils
Gets the array class corresponding to the given element type.
getArtifactId() - Method in interface org.scijava.app.App
The Maven artifactId of the application.
getArtifactId() - Method in class org.scijava.app.SciJavaApp
 
getArtifactId() - Method in class org.scijava.minimaven.Coordinate
 
getArtifactId() - Method in class org.scijava.minimaven.MavenProject
 
getArtifactId() - Method in class org.scijava.util.POM
Gets the POM's artifactId.
getAssociativity() - Method in class org.scijava.parse.Operator
 
getAttribute(String) - Method in class org.scijava.script.AbstractScriptContext
 
getAttribute(String, int) - Method in class org.scijava.script.AbstractScriptContext
 
getAttributesScope(String) - Method in class org.scijava.script.AbstractScriptContext
 
getAvailableUIs() - Method in class org.scijava.ui.DefaultUIService
 
getAvailableUIs() - Method in interface org.scijava.ui.UIService
Gets the user interfaces available to the service.
getBase() - Method in class org.scijava.ui.dnd.MIMEType
Gets the MIME type with no parameter list.
getBaseClass() - Method in class org.scijava.object.ObjectIndex
Gets the base class of the items being managed.
getBaseDirectory() - Method in interface org.scijava.app.App
Gets the application's root directory.
getBaseDirectory(String, Class<?>, String) - Static method in class org.scijava.util.AppUtils
Gets the application root directory.
getBaseDirectory(Class<?>) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory containing the given class file.
getBaseDirectory(Class<?>, String) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory containing the given class file.
getBaseDirectory(File, String) - Static method in class org.scijava.util.AppUtils
Gets the base file system directory from the given known class location.
getBindings(int) - Method in class org.scijava.script.AbstractScriptContext
 
getBindings(int) - Method in class org.scijava.script.AbstractScriptEngine
 
getBindings(int) - Method in class org.scijava.script.AdaptedScriptEngine
 
getBindings() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getBindings() - Method in interface org.scijava.script.ScriptInterpreter
Returns the Bindings of the associated ScriptEngine at ScriptContext.ENGINE_SCOPE scope.
getBlue(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getBlue() - Method in class org.scijava.util.ColorRGB
 
getBoolean(String, boolean) - Method in class org.scijava.prefs.DefaultPrefService
 
getBoolean(Class<?>, String, boolean) - Method in class org.scijava.prefs.DefaultPrefService
 
getBoolean(String, boolean) - Method in interface org.scijava.prefs.PrefService
 
getBoolean(Class<?>, String, boolean) - Method in interface org.scijava.prefs.PrefService
 
getBoolean(String, boolean) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getBoolean(Class<?>, String, boolean) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getBottomRight() - Method in class org.scijava.util.IntRect
Gets the bottom right coordinate of the rectangle.
getBottomRight() - Method in class org.scijava.util.RealRect
Gets the bottom right coordinate of the rectangle.
getBuildFromSource() - Method in class org.scijava.minimaven.MavenProject
 
getBuildJdk() - Method in class org.scijava.util.Manifest
 
getBuildNumber(Class<?>) - Static method in class org.scijava.util.VersionUtils
Looks up the build number (typically an SCM revision) of the specified class.
getBuiltBy() - Method in class org.scijava.util.Manifest
 
getButton() - Method in class org.scijava.display.event.input.MsButtonEvent
 
getByExtension(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
getByName(String) - Method in class org.scijava.script.ScriptLanguageIndex
 
getByteBuffer() - Method in class org.scijava.io.BytesLocation
Gets the associated ByteBuffer.
getCallback() - Method in class org.scijava.command.CommandModuleItem
 
getCallback() - Method in class org.scijava.module.AbstractModuleItem
 
getCallback() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getCallback() - Method in interface org.scijava.module.ModuleItem
Gets the function that is called whenever this item changes.
getCallingClass(Class<?>) - Static method in class org.scijava.test.TestUtils
Returns the class of the caller (excluding the specified class).
getCallingCodeLocation(Class<?>) - Static method in class org.scijava.test.TestUtils
Returns the class and the method/line number of the caller (excluding the specified class).
getCallingThread() - Method in class org.scijava.event.SciJavaEvent
Gets the thread that published the event.
getCancelReason() - Method in interface org.scijava.Cancelable
Gets a message describing why the operation was canceled.
getCancelReason() - Method in class org.scijava.command.CommandModule
 
getCancelReason() - Method in class org.scijava.command.ContextCommand
 
getCancelReason() - Method in class org.scijava.command.DynamicCommand
 
getCancelReason() - Method in class org.scijava.command.ModuleCommand
 
getCancelReason() - Method in class org.scijava.module.process.AbstractPreprocessorPlugin
 
getCancelReason() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
 
getCellEditorValue() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
getCharacter() - Method in class org.scijava.display.event.input.KyEvent
 
getChildren() - Method in class org.scijava.menu.ShadowMenu
Gets this node's children, sorted by weight.
getChildren() - Method in class org.scijava.minimaven.MavenProject
 
getChoices() - Method in class org.scijava.command.CommandModuleItem
 
getChoices() - Method in class org.scijava.module.AbstractModuleItem
 
getChoices() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getChoices() - Method in interface org.scijava.module.ModuleItem
Gets the list of possible values.
getChoices() - Method in class org.scijava.widget.DefaultWidgetModel
 
getChoices() - Method in interface org.scijava.widget.WidgetModel
Gets the multiple choice list for the module input.
getCIManagementSystem() - Method in class org.scijava.util.POM
Gets the CI management system.
getCIManagementURL() - Method in class org.scijava.util.POM
Gets the CI management URL.
getClass(Type) - Static method in class org.scijava.util.ConversionUtils
getClass(Type) - Static method in class org.scijava.util.GenericUtils
Gets the sole raw class corresponding to the given type, or null if none.
getClasses(Type) - Static method in class org.scijava.util.GenericUtils
Gets all raw classes corresponding to the given type.
getClassName() - Method in class org.scijava.command.CommandInfo
 
getClassName() - Method in interface org.scijava.Instantiable
Gets the fully qualified name of the Class of the objects that can be created.
getClassName() - Method in class org.scijava.plugin.PluginInfo
 
getClassPath(boolean) - Method in class org.scijava.minimaven.MavenProject
 
getClosestPresetColor(ColorRGB) - Static method in class org.scijava.util.Colors
Returns the preset color closest to a given color.
getCode() - Method in class org.scijava.display.event.input.KyEvent
 
getCode() - Method in enum org.scijava.input.KeyCode
Gets the key's numeric code.
getColor(ColorRGB) - Static method in class org.scijava.ui.awt.AWTColors
Gets the AWT Color corresponding to the given ImageJ ColorRGB.
getColor(ColorRGB, int) - Static method in class org.scijava.ui.awt.AWTColors
Get the AWT Color corresponding to the given ImageJ ColorRGB plus explicit alpha component (0-255).
getColor(String) - Static method in class org.scijava.util.Colors
Gets the preset color with the given name.
getColorRGB(Color) - Static method in class org.scijava.ui.awt.AWTColors
Gets the ImageJ ColorRGB corresponding to the given AWT Color.
getColorRGBA(Color) - Static method in class org.scijava.ui.awt.AWTColors
Get the ImageJ ColorRGBA corresponding to the given AWT Color, including alpha component.
getColumnCount() - Method in class org.scijava.command.CommandModuleItem
 
getColumnCount() - Method in class org.scijava.module.AbstractModuleItem
 
getColumnCount() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getColumnCount() - Method in interface org.scijava.module.ModuleItem
Gets the preferred width of the input field in characters (if applicable).
getColumnCount() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getColumnName(int) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getCommand() - Method in class org.scijava.command.CommandModule
Gets the command instance handled by this module.
getCommand(Class<C>) - Method in interface org.scijava.command.CommandService
Gets the first available command of the given class, or null if none.
getCommand(String) - Method in interface org.scijava.command.CommandService
Gets the first available command of the given class name, or null if none.
getCommand(Class<C>) - Method in class org.scijava.command.DefaultCommandService
 
getCommand(String) - Method in class org.scijava.command.DefaultCommandService
 
getCommand() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
Gets the currently selected command.
getCommands() - Method in interface org.scijava.command.CommandService
Gets the list of all available Commands).
getCommands(List<PluginInfo<CT>>) - Method in interface org.scijava.command.CommandService
Gets the list of Commands corresponding to the given plugins.
getCommands() - Method in class org.scijava.command.DefaultCommandService
 
getCommands(List<PluginInfo<CT>>) - Method in class org.scijava.command.DefaultCommandService
 
getCommands() - Method in interface org.scijava.platform.AppEventService
Deprecated.
Tag relevant commands instead: attrs = { @Attr(name = "app-command") }
getCommands() - Method in class org.scijava.platform.DefaultAppEventService
Deprecated.
 
getCommandService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
getCommandsOfClass(Class<C>) - Method in interface org.scijava.command.CommandService
Gets the list of commands of the given class.
getCommandsOfClass(String) - Method in interface org.scijava.command.CommandService
Gets the list of commands with the given class name.
getCommandsOfClass(Class<C>) - Method in class org.scijava.command.DefaultCommandService
 
getCommandsOfClass(String) - Method in class org.scijava.command.DefaultCommandService
 
getCommandsOfType(Class<CT>) - Method in interface org.scijava.command.CommandService
Gets the list of Commands of the given type.
getCommandsOfType(Class<CT>) - Method in class org.scijava.command.DefaultCommandService
 
getCompatibleInputClasses(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleInputClasses(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getCompatibleInputs(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleInputs(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getCompatibleOutputClasses(Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getCompatibleOutputClasses(Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getComponent() - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
getComponent() - Method in class org.scijava.ui.awt.widget.AWTInputWidget
 
getComponent() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
getComponent() - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
getComponent() - Method in class org.scijava.ui.swing.widget.SwingInputWidget
 
getComponent() - Method in interface org.scijava.widget.UIComponent
Gets the user interface component housing this object.
getComponentClass(Type) - Static method in class org.scijava.util.ConversionUtils
getComponentClass(Type) - Static method in class org.scijava.util.GenericUtils
Gets the sole component class of the given array type, or null if none.
getComponentType() - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
getComponentType() - Method in class org.scijava.ui.awt.widget.AWTInputWidget
 
getComponentType() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
getComponentType() - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
getComponentType() - Method in class org.scijava.ui.swing.widget.SwingInputWidget
 
getComponentType(Type) - Static method in class org.scijava.util.GenericUtils
Gets the component type of the given array type, or null if not an array.
getComponentType() - Method in interface org.scijava.widget.UIComponent
Gets the type of the UI component housing the object.
getConsolePane() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getConsolePane() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava console pane, or null if not applicable.
getContext() - Method in class org.scijava.AbstractContextual
 
getContext() - Method in class org.scijava.command.CommandModule
 
getContext() - Method in class org.scijava.command.DynamicCommand
 
getContext() - Method in class org.scijava.command.ModuleCommand
 
getContext() - Method in interface org.scijava.Contextual
Gets the application context to which the object belongs, or null if Contextual.setContext(Context) has not yet been called on this object.
getContext() - Method in class org.scijava.script.AbstractScriptEngine
 
getContext() - Method in class org.scijava.script.AdaptedScriptEngine
 
getContext() - Method in class org.scijava.script.ScriptInfo
 
getContext() - Method in class org.scijava.script.ScriptModule
 
getContext() - Method in class org.scijava.service.AbstractService
 
getCoordinate() - Method in class org.scijava.minimaven.MavenProject
 
getCreatedBy() - Method in class org.scijava.util.Manifest
 
getCursor() - Method in interface org.scijava.tool.Tool
The tool's mouse pointer.
getCursor(MouseCursor) - Static method in class org.scijava.ui.awt.AWTCursors
Gets the AWT Cursor corresponding to the given ImageJ MouseCursor.
getCursorCode(MouseCursor) - Static method in class org.scijava.ui.awt.AWTCursors
Gets the AWT cursor code corresponding to the given ImageJ MouseCursor.
getData() - Method in class org.scijava.io.event.IOEvent
Gets the data for which I/O took place.
getData() - Method in class org.scijava.plugins.commands.io.OpenFile
 
getData() - Method in class org.scijava.ui.ARGBPlane
 
getData(MIMEType) - Method in class org.scijava.ui.awt.AWTDragAndDropData
 
getData(MIMEType) - Method in class org.scijava.ui.dnd.DefaultDragAndDropData
 
getData(MIMEType) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the data with respect to the given MIME type.
getData(Class<T>) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the data as an object of the given Java class.
getData() - Method in class org.scijava.ui.dnd.event.DragAndDropEvent
Gets the drag-and-drop data.
getDataHandle() - Method in class org.scijava.io.DataHandleInputStream
 
getDataType() - Method in interface org.scijava.io.IOPlugin
The type of data opened and/or saved by the plugin.
getDataType() - Method in class org.scijava.script.io.ScriptIOPlugin
 
getDataType() - Method in class org.scijava.text.io.TextIOPlugin
 
getDefaultUI() - Method in class org.scijava.ui.DefaultUIService
 
getDefaultUI() - Method in interface org.scijava.ui.UIService
Gets the default user interface.
getDefaultValue() - Method in class org.scijava.command.CommandModuleItem
 
getDefaultValue() - Method in class org.scijava.module.AbstractModuleItem
 
getDefaultValue(ModuleItem<T>) - Method in class org.scijava.module.DefaultModuleService
 
getDefaultValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getDefaultValue() - Method in interface org.scijava.module.ModuleItem
Gets the default value.
getDefaultValue(ModuleItem<T>) - Method in interface org.scijava.module.ModuleService
Gets the default value of the given ModuleItem.
getDefaultValue(Number, Number, Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getDelegateClass() - Method in class org.scijava.module.AbstractModuleItem
 
getDelegateClassName() - Method in class org.scijava.command.CommandInfo
 
getDelegateClassName() - Method in interface org.scijava.module.ModuleInfo
Gets the fully qualified name of the class containing the module's actual implementation.
getDelegateClassName() - Method in interface org.scijava.module.MutableModuleInfo
 
getDelegateClassName() - Method in class org.scijava.script.ScriptInfo
 
getDelegateObject() - Method in class org.scijava.command.CommandModule
 
getDelegateObject() - Method in class org.scijava.module.AbstractModule
 
getDelegateObject() - Method in interface org.scijava.module.Module
Gets the object containing the module's actual implementation.
getDependencies() - Method in class org.scijava.minimaven.MavenProject
 
getDependencies(boolean, boolean, String...) - Method in class org.scijava.minimaven.MavenProject
 
getDependencies(Set<MavenProject>, boolean, boolean, Set<String>, String...) - Method in class org.scijava.minimaven.MavenProject
 
getDescription() - Method in class org.scijava.AbstractBasicDetails
 
getDescription() - Method in interface org.scijava.BasicDetails
Gets a string describing the object.
getDescription() - Method in class org.scijava.command.CommandModuleItem
 
getDescription() - Method in class org.scijava.command.DynamicCommandInfo
 
getDescription() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getDescription() - Method in interface org.scijava.tool.Tool
Returns the text the tool provides when mouse hovers over tool
getDescriptor() - Method in class org.scijava.io.event.IOEvent
Gets the data descriptor (source or destination).
getDesktop() - Method in class org.scijava.ui.swing.mdi.SwingMdiUI
 
getDesktop() - Method in interface org.scijava.ui.UserInterface
Gets the desktop, for use with multi-document interfaces (MDI), or null if not applicable.
getDestination() - Method in class org.scijava.io.event.DataSavedEvent
Gets the destination to which data was saved.
getDirectDependencies() - Method in class org.scijava.minimaven.MavenProject
 
getDirectory() - Method in class org.scijava.minimaven.MavenProject
 
getDisplay(String) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplay(String) - Method in interface org.scijava.display.DisplayService
Gets a display by its name.
getDisplay() - Method in class org.scijava.display.event.DisplayEvent
 
getDisplay() - Method in class org.scijava.input.DefaultInputService
 
getDisplay() - Method in interface org.scijava.input.InputService
Gets the display associated with the last observed mouse cursor.
getDisplay() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
getDisplay() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
getDisplay() - Method in interface org.scijava.ui.viewer.DisplayPanel
Gets the panel's associated display.
getDisplay() - Method in interface org.scijava.ui.viewer.DisplayViewer
Gets the display being viewed.
getDisplay() - Method in class org.scijava.ui.viewer.text.AbstractTextDisplayViewer
 
getDisplay() - Method in interface org.scijava.ui.viewer.text.TextDisplayPanel
 
getDisplay() - Method in interface org.scijava.ui.viewer.text.TextDisplayViewer
 
getDisplayPlugin(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugin(String) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugin(Class<D>) - Method in interface org.scijava.display.DisplayService
Gets the display plugin of the given class, or null if none.
getDisplayPlugin(String) - Method in interface org.scijava.display.DisplayService
Gets the display plugin of the given class name, or null if none.
getDisplayPlugins() - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPlugins() - Method in interface org.scijava.display.DisplayService
Gets the list of known display plugins.
getDisplayPluginsOfType(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplayPluginsOfType(Class<DT>) - Method in interface org.scijava.display.DisplayService
Gets the list of display plugins of the given type (e.g., ImageDisplay.class).
getDisplays() - Method in class org.scijava.display.DefaultDisplayService
 
getDisplays(Object) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplays() - Method in interface org.scijava.display.DisplayService
Gets a list of all available displays.
getDisplays(Object) - Method in interface org.scijava.display.DisplayService
Gets a list of displays currently visualizing the given object.
getDisplaysOfType(Class<D>) - Method in class org.scijava.display.DefaultDisplayService
 
getDisplaysOfType(Class<DT>) - Method in interface org.scijava.display.DisplayService
Gets a list of all available displays of the given type (e.g., ImageDisplay.class).
getDisplayViewer(Display<?>) - Method in class org.scijava.ui.DefaultUIService
 
getDisplayViewer(Display<?>) - Method in interface org.scijava.ui.UIService
Gets the UI widget being used to visualize the given Display.
getDocument() - Method in class org.scijava.util.XML
Gets the XML's DOM representation.
getDouble(String, double) - Method in class org.scijava.prefs.DefaultPrefService
 
getDouble(Class<?>, String, double) - Method in class org.scijava.prefs.DefaultPrefService
 
getDouble(String, double) - Method in interface org.scijava.prefs.PrefService
 
getDouble(Class<?>, String, double) - Method in interface org.scijava.prefs.PrefService
 
getDouble(String, double) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getDouble(Class<?>, String, double) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getDownloadAutomatically() - Method in class org.scijava.minimaven.BuildEnvironment
 
getEncoding() - Method in class org.scijava.io.AbstractDataHandle
 
getEncoding() - Method in interface org.scijava.io.DataHandle
Gets the native encoding of the stream.
getEngine() - Method in class org.scijava.plugins.scripting.groovy.GroovyCompiledScript
 
getEngine() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getEngine() - Method in interface org.scijava.script.ScriptInterpreter
Returns the associated ScriptEngine.
getEngine() - Method in class org.scijava.script.ScriptModule
Gets the script engine used to execute the script.
getEngineName() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
getEngineName() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getEngineName() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getEngineName() - Method in class org.scijava.script.AbstractScriptLanguage
 
getEngineName() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getEngineVersion() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getEngineVersion() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getEngineVersion() - Method in interface org.scijava.script.ScriptLanguage
 
getEnvironmentVariables() - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getErr() - Method in class org.scijava.minimaven.BuildEnvironment
 
getErrorWriter() - Method in class org.scijava.script.AbstractScriptContext
 
getEventClass() - Method in interface org.scijava.event.EventSubscriber
 
getEventService() - Method in interface org.scijava.command.CommandService
Deprecated.
getEventService() - Method in interface org.scijava.display.DisplayService
Deprecated.
getEventService() - Method in interface org.scijava.input.InputService
Deprecated.
getEventService() - Method in interface org.scijava.object.ObjectService
Deprecated.
getEventService() - Method in interface org.scijava.platform.PlatformService
Deprecated.
getEventString() - Method in class org.scijava.event.EventDetails
 
getEventType() - Method in class org.scijava.event.EventDetails
 
getExceptions() - Method in class org.scijava.plugin.PluginIndex
Gets the exceptions which occurred during the last invocation of PluginIndex.discover().
getExecutorService() - Method in class org.scijava.thread.DefaultThreadService
 
getExecutorService() - Method in interface org.scijava.thread.ThreadService
getExtension(File) - Static method in class org.scijava.util.FileUtils
Extracts the file extension from a file.
getExtension(String) - Static method in class org.scijava.util.FileUtils
Extracts the file extension from a file path.
getExtensions() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptLanguage
 
getExtensions() - Method in class org.scijava.plugins.text.markdown.MarkdownTextFormat
 
getExtensions() - Method in class org.scijava.plugins.text.plain.PlainTextFormat
 
getExtensions() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getExtensions() - Method in interface org.scijava.script.ScriptLanguage
 
getExtensions() - Method in interface org.scijava.text.TextFormat
Gets the list of filename extensions for text in this format.
getFactory() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getFactory() - Method in class org.scijava.script.AbstractScriptEngine
 
getFactory() - Method in class org.scijava.script.AdaptedScriptEngine
 
getField() - Method in class org.scijava.command.CommandModuleItem
 
getField(String, String) - Static method in class org.scijava.util.ClassUtils
Gets the specified field of the given class, or null if it does not exist.
getField(Class<?>, String) - Static method in class org.scijava.util.ClassUtils
Gets the specified field of the given class, or null if it does not exist.
getFieldClasses(Field, Class<?>) - Static method in class org.scijava.util.GenericUtils
Returns the "safe" class(es) of the given field, as viewed from the specified type.
getFieldName(Class<?>, int) - Static method in class org.scijava.util.DebugUtils
This method uses reflection to scan the values of the given class's static fields, returning the first matching field's name.
getFieldType(Field, Class<?>) - Static method in class org.scijava.util.GenericUtils
Returns the "safe" generic type of the given field, as viewed from the given type.
getFile() - Method in class org.scijava.io.FileLocation
Gets the associated File.
getFileExtensions(ScriptLanguage) - Method in class org.scijava.script.ScriptLanguageIndex
 
getFileName(boolean, String) - Method in class org.scijava.minimaven.Coordinate
 
getFileName(boolean, boolean, String) - Method in class org.scijava.minimaven.Coordinate
 
getFiles() - Method in class org.scijava.platform.event.AppOpenFilesEvent
 
getFloat(String, float) - Method in class org.scijava.prefs.DefaultPrefService
 
getFloat(Class<?>, String, float) - Method in class org.scijava.prefs.DefaultPrefService
 
getFloat(String, float) - Method in interface org.scijava.prefs.PrefService
 
getFloat(Class<?>, String, float) - Method in interface org.scijava.prefs.PrefService
 
getFloat(String, float) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getFloat(Class<?>, String, float) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getFocus() - Method in class org.scijava.ui.swing.SwingDialog
Gets the Component that will have the initial keyboard focus.
getFromClipboard() - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
getGAV() - Method in class org.scijava.minimaven.Coordinate
 
getGAV() - Method in class org.scijava.minimaven.MavenProject
 
getGenericType() - Method in class org.scijava.command.CommandModuleItem
 
getGenericType() - Method in class org.scijava.module.AbstractModuleItem
 
getGenericType() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getGenericType() - Method in interface org.scijava.module.ModuleItem
Gets the type of the item, including Java generic parameters.
getGenericType(Field, Class<?>) - Static method in class org.scijava.util.ClassUtils
getGreen(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getGreen() - Method in class org.scijava.util.ColorRGB
 
getGroupId() - Method in interface org.scijava.app.App
The Maven groupId of the application.
getGroupId() - Method in class org.scijava.app.SciJavaApp
 
getGroupId() - Method in class org.scijava.minimaven.Coordinate
 
getGroupId() - Method in class org.scijava.minimaven.MavenProject
 
getGroupId() - Method in class org.scijava.util.POM
Gets the POM's groupId.
getHandler(Object, Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Class<?>, Class<?>) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Object, Type) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Class<?>, Type) - Method in class org.scijava.convert.AbstractConvertService
 
getHandler(Object, Class<?>) - Method in interface org.scijava.convert.ConvertService
 
getHandler(Object, Type) - Method in interface org.scijava.convert.ConvertService
 
getHandler(Class<?>, Class<?>) - Method in interface org.scijava.convert.ConvertService
getHandler(Class<?>, Type) - Method in interface org.scijava.convert.ConvertService
getHandler(DT) - Method in interface org.scijava.plugin.HandlerService
Gets the most appropriate handler for the given data object, or null if no handler supports it.
getHandler(File) - Method in interface org.scijava.text.TextService
Gets the text format which best handles the given file.
getHandler(DragAndDropData, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the drag-and-drop handler which will be used to handle the given DragAndDropData dragged onto the specified display.
getHandler(Object, Display<?>) - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the drag-and-drop handler which will be used to handle the given object dragged onto the specified display.
getHeader() - Method in class org.scijava.plugins.scripting.jruby.JRubyScriptHeader
 
getHeader() - Method in interface org.scijava.script.ScriptHeader
 
getHeader(ScriptLanguage) - Method in interface org.scijava.script.ScriptHeaderService
Searches for all ScriptHeaders capable of handling the given ScriptLanguage and combines the result of their ScriptHeader.getHeader() output to a single string.
getHeight() - Method in class org.scijava.ui.ARGBPlane
 
getIconPath() - Method in class org.scijava.AbstractUIDetails
 
getIconPath() - Method in class org.scijava.command.DynamicCommandInfo
 
getIconPath() - Method in class org.scijava.MenuEntry
 
getIconPath() - Method in interface org.scijava.UIDetails
Gets the resource path to an icon representing the object.
getIconRectangleHeight() - Method in interface org.scijava.tool.IconDrawer
 
getIconRectangleWidth() - Method in interface org.scijava.tool.IconDrawer
 
getIconURL() - Method in class org.scijava.command.CommandInfo
 
getIconURL() - Method in class org.scijava.menu.ShadowMenu
Gets the URL of the icon associated with this node's MenuEntry.
getIconURL() - Method in class org.scijava.plugin.PluginInfo
Gets the URL corresponding to the icon resource path.
getIdentifier() - Method in class org.scijava.command.CommandInfo
 
getIdentifier() - Method in interface org.scijava.Identifiable
Gets a string intended to function as an identifier for the object.
getIdentifier() - Method in interface org.scijava.module.ModuleInfo
 
getIdentifier() - Method in class org.scijava.plugin.PluginInfo
 
getIdentifier() - Method in interface org.scijava.plugin.RichPlugin
 
getIdentifier() - Method in class org.scijava.script.ScriptInfo
 
getImplementationBuild(File) - Method in class org.scijava.minimaven.BuildEnvironment
 
getImplementationBuild() - Method in class org.scijava.util.Manifest
 
getImplementationDate() - Method in class org.scijava.util.Manifest
 
getImplementationTitle() - Method in class org.scijava.util.Manifest
 
getImplementationVendor() - Method in class org.scijava.util.Manifest
 
getImplementationVendorId() - Method in class org.scijava.util.Manifest
 
getImplementationVersion() - Method in class org.scijava.util.Manifest
 
getIndex() - Method in class org.scijava.module.DefaultModuleService
 
getIndex() - Method in interface org.scijava.module.ModuleService
Gets the index of available modules.
getIndex() - Method in class org.scijava.object.DefaultObjectService
 
getIndex() - Method in interface org.scijava.object.ObjectService
Gets the index of available objects.
getIndex() - Method in class org.scijava.plugin.DefaultPluginService
 
getIndex() - Method in interface org.scijava.plugin.PluginService
Gets the index of available plugins.
getIndex() - Method in class org.scijava.script.DefaultScriptService
 
getIndex() - Method in interface org.scijava.script.ScriptService
Gets the index of available scripting languages.
getInfo(boolean) - Method in class org.scijava.AbstractGateway
 
getInfo(boolean) - Method in interface org.scijava.app.App
Gets a string with information about the application.
getInfo() - Method in class org.scijava.command.CommandModule
 
getInfo() - Method in class org.scijava.command.DynamicCommand
 
getInfo() - Method in class org.scijava.command.ModuleCommand
 
getInfo(boolean) - Method in interface org.scijava.Gateway
 
getInfo() - Method in class org.scijava.module.AbstractModuleItem
 
getInfo() - Method in class org.scijava.module.DefaultMutableModule
 
getInfo() - Method in interface org.scijava.module.Module
Gets metadata about this module.
getInfo() - Method in interface org.scijava.module.ModuleItem
Gets the ModuleInfo to which this item belongs.
getInfo() - Method in interface org.scijava.module.MutableModule
 
getInfo() - Method in class org.scijava.plugin.AbstractRichPlugin
 
getInfo() - Method in interface org.scijava.plugin.HasPluginInfo
Gets the PluginInfo metadata associated with the object.
getInfo() - Method in class org.scijava.script.ScriptModule
 
getInitializer() - Method in class org.scijava.command.CommandInfo
 
getInitializer() - Method in class org.scijava.command.CommandModuleItem
 
getInitializer() - Method in class org.scijava.command.DynamicCommandInfo
 
getInitializer() - Method in class org.scijava.module.AbstractModuleItem
 
getInitializer() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getInitializer() - Method in interface org.scijava.module.ModuleInfo
Gets the function that is called to initialize the module's values.
getInitializer() - Method in interface org.scijava.module.ModuleItem
Gets the function that is called to initialize the item's value.
getInput(String) - Method in class org.scijava.command.CommandInfo
 
getInput(String, Class<T>) - Method in class org.scijava.command.CommandInfo
 
getInput(String) - Method in class org.scijava.command.CommandModule
 
getInput(String) - Method in class org.scijava.command.DynamicCommand
 
getInput(String) - Method in class org.scijava.module.AbstractModule
 
getInput(String) - Method in class org.scijava.module.AbstractModuleInfo
 
getInput(String, Class<T>) - Method in class org.scijava.module.AbstractModuleInfo
 
getInput(String) - Method in interface org.scijava.module.Module
Gets the value of the input with the given name.
getInput(String) - Method in interface org.scijava.module.ModuleInfo
Gets the input item with the given name.
getInput(String, Class<T>) - Method in interface org.scijava.module.ModuleInfo
Gets the input item with the given name and type.
getInputField(String) - Method in class org.scijava.command.DynamicCommandInfo
Gets the Field corresponding to the given @Parameter annotated module input, or null if the input does not exist or was not declared using the @Parameter mechanism.
getInputFile() - Method in class org.scijava.plugins.commands.io.OpenFile
 
getInputs() - Method in class org.scijava.module.AbstractModule
 
getInputs() - Method in interface org.scijava.module.Module
Gets a table of input values.
getInputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayWrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper
 
getInputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayWrapper
 
getInputType() - Method in class org.scijava.convert.CastingConverter
 
getInputType() - Method in interface org.scijava.convert.Converter
 
getInputType() - Method in class org.scijava.convert.DefaultConverter
 
getInputType() - Method in class org.scijava.convert.NullConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.BigIntegerToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToFloatConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToLongConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ByteToShortConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.DoubleToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.FloatToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.FloatToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.IntegerToLongConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.LongToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.LongToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToBigDecimalConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToBigIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToDoubleConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToFloatConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToIntegerConverter
 
getInputType() - Method in class org.scijava.convert.NumberConverters.ShortToLongConverter
 
getInstance(Class<P>) - Method in class org.scijava.plugin.AbstractSingletonService
 
getInstance(Class<P>) - Method in interface org.scijava.plugin.SingletonService
Gets the singleton plugin instance of the given class.
getInstances() - Method in class org.scijava.options.DefaultOptionsService
 
getInstances() - Method in class org.scijava.plugin.AbstractSingletonService
 
getInstances() - Method in interface org.scijava.plugin.HandlerService
Gets the list of handlers.
getInstances() - Method in interface org.scijava.plugin.SingletonService
Gets the list of plugin instances.
getInstances() - Method in interface org.scijava.text.TextService
Gets the list of available text formats.
getInstances() - Method in interface org.scijava.ui.dnd.DragAndDropService
Gets the list of available drag-and-drop handlers, which are used to perform drag-and-drop operations.
getInt(String, int) - Method in class org.scijava.prefs.DefaultPrefService
 
getInt(Class<?>, String, int) - Method in class org.scijava.prefs.DefaultPrefService
 
getInt(String, int) - Method in interface org.scijava.prefs.PrefService
 
getInt(Class<?>, String, int) - Method in interface org.scijava.prefs.PrefService
 
getInt(String, int) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getInt(Class<?>, String, int) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getInterface(Class<T>) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getInterface(Object, Class<T>) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
getInterpretedLanguages() - Method in class org.scijava.script.ScriptREPL
Gets the list of languages compatible with the REPL.
getInterpreter() - Method in class org.scijava.script.ScriptREPL
Gets the script interpreter for the currently active language.
getIntX() - Method in class org.scijava.util.RealCoords
 
getIntY() - Method in class org.scijava.util.RealCoords
 
getIOType() - Method in class org.scijava.command.CommandModuleItem
 
getIOType() - Method in class org.scijava.module.AbstractModuleItem
 
getIOType() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getIOType() - Method in interface org.scijava.module.ModuleItem
Gets the input/output type of the item.
getIssueManagementSystem() - Method in class org.scijava.util.POM
Gets the issue management system.
getIssueManagementURL() - Method in class org.scijava.util.POM
Gets the issue management URL.
getItem() - Method in class org.scijava.widget.DefaultWidgetModel
 
getItem() - Method in interface org.scijava.widget.WidgetModel
Gets the module input's associated item descriptor.
getItems() - Method in class org.scijava.object.event.ListEvent
Gets the list of affected items.
getIterable(String) - Method in class org.scijava.prefs.DefaultPrefService
 
getIterable(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getIterable(String) - Method in interface org.scijava.prefs.PrefService
Gets an iterable from the preferences.
getIterable(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets an iterable from the preferences.
getJarName() - Method in class org.scijava.minimaven.Coordinate
 
getJarName(boolean) - Method in class org.scijava.minimaven.Coordinate
 
getJarName() - Method in class org.scijava.minimaven.MavenProject
 
getJniDir() - Method in class org.scijava.nativelib.BaseJniExtractor
this is where JNI libraries are extracted to (e.g.
getJniDir() - Method in class org.scijava.nativelib.DefaultJniExtractor
 
getJniDir() - Method in class org.scijava.nativelib.WebappJniExtractor
 
getJniExtractor() - Static method in class org.scijava.nativelib.NativeLoader
 
getKey() - Method in class org.scijava.minimaven.Coordinate
 
getKeyCode() - Method in class org.scijava.input.Accelerator
 
getLabel() - Method in class org.scijava.AbstractBasicDetails
 
getLabel() - Method in interface org.scijava.BasicDetails
Gets the name to appear in a UI, if applicable.
getLabel() - Method in class org.scijava.command.CommandModuleItem
 
getLabel() - Method in class org.scijava.command.DynamicCommandInfo
 
getLabel() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getLanguage() - Method in class org.scijava.script.DefaultScriptInterpreter
 
getLanguage() - Method in interface org.scijava.script.ScriptInterpreter
Returns the associated ScriptLanguage.
getLanguage() - Method in class org.scijava.script.ScriptModule
Gets the scripting language of the script.
getLanguageByExtension(String) - Method in interface org.scijava.script.ScriptService
Gets the scripting language that handles the given file extension.
getLanguageByName(String) - Method in interface org.scijava.script.ScriptService
Gets the scripting language with the given name.
getLanguageName() - Method in class org.scijava.script.AbstractScriptLanguage
 
getLanguageName() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getLanguages() - Method in interface org.scijava.script.ScriptService
Gets the available scripting languages.
getLanguageVersion() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getLanguageVersion() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getLanguageVersion() - Method in interface org.scijava.script.ScriptLanguage
 
getLastX() - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
Gets the last known mouse X coordinate.
getLastY() - Method in class org.scijava.ui.awt.AWTInputEventDispatcher
Gets the last known mouse Y coordinate.
getLeaf() - Method in class org.scijava.MenuPath
Gets the final element of the menu path.
getLevel() - Method in class org.scijava.display.event.DisplayUpdatedEvent
 
getLevel() - Method in class org.scijava.log.AbstractLogService
 
getLevel() - Method in interface org.scijava.log.LogService
 
getLevel() - Method in class org.scijava.log.slf4j.SLF4JLogService
 
getList(String) - Method in class org.scijava.prefs.DefaultPrefService
 
getList(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getList(String, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getList(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
 
getList(String) - Method in interface org.scijava.prefs.PrefService
Gets a List from the preferences.
getList(String, String) - Method in interface org.scijava.prefs.PrefService
Gets a List from the preferences, indexed under the specified path.
getList(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets a List from the preferences, indexed under the specified class.
getList(Class<?>) - Method in interface org.scijava.prefs.PrefService
Gets a List from the preferences.
getList(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a List from the preferences.
getList(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getList(Preferences) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a List from the preferences.
getLocation() - Method in interface org.scijava.Locatable
Gets the URL string defining the object's location.
getLocation() - Method in interface org.scijava.module.ModuleInfo
 
getLocation() - Method in class org.scijava.plugin.PluginInfo
 
getLocation() - Method in class org.scijava.script.ScriptInfo
 
getLocation(String) - Static method in class org.scijava.util.ClassUtils
Gets the base location of the given class.
getLocation(String, ClassLoader) - Static method in class org.scijava.util.ClassUtils
Gets the base location of the given class.
getLocation(Class<?>) - Static method in class org.scijava.util.ClassUtils
Gets the base location of the given class.
getLocationX() - Method in interface org.scijava.ui.ApplicationFrame
Gets the X coordinate of the application frame's top left corner.
getLocationX() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
getLocationX() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
getLocationY() - Method in interface org.scijava.ui.ApplicationFrame
Gets the Y coordinate of the application frame's top left corner.
getLocationY() - Method in class org.scijava.ui.awt.AWTApplicationFrame
 
getLocationY() - Method in class org.scijava.ui.swing.SwingApplicationFrame
 
getLogger() - Method in class org.scijava.log.slf4j.SLF4JLogService
 
getLong(String, long) - Method in class org.scijava.prefs.DefaultPrefService
 
getLong(Class<?>, String, long) - Method in class org.scijava.prefs.DefaultPrefService
 
getLong(String, long) - Method in interface org.scijava.prefs.PrefService
 
getLong(Class<?>, String, long) - Method in interface org.scijava.prefs.PrefService
 
getLong(String, long) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getLong(Class<?>, String, long) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getLongX() - Method in class org.scijava.util.RealCoords
 
getLongY() - Method in class org.scijava.util.RealCoords
 
getLookAndFeel() - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
 
getMainClass() - Method in class org.scijava.minimaven.MavenProject
 
getMainClass() - Static method in class org.scijava.util.AppUtils
Gets the class whose main method launched the application.
getMainClassName() - Static method in class org.scijava.util.DebugUtils
Get the class whose main method launched the application.
getMains() - Method in class org.scijava.main.DefaultMainService
 
getMains() - Method in interface org.scijava.main.MainService
Gets the registered main classes to execute.
getManifest() - Method in class org.scijava.app.AbstractApp
 
getManifest() - Method in interface org.scijava.app.App
Gets the manifest containing metadata about the application.
getManifest(Class<?>) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given class.
getManifest(XML) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given XML document.
getManifest(File) - Static method in class org.scijava.util.Manifest
Gets the JAR manifest associated with the given JAR file.
getManifestData(Manifest) - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getManifestVersion() - Method in class org.scijava.util.Manifest
 
getMap(String) - Method in class org.scijava.prefs.DefaultPrefService
 
getMap(Class<?>, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getMap(String, String) - Method in class org.scijava.prefs.DefaultPrefService
 
getMap(Class<?>) - Method in class org.scijava.prefs.DefaultPrefService
 
getMap(String) - Method in interface org.scijava.prefs.PrefService
Gets a Map from the preferences.
getMap(Class<?>, String) - Method in interface org.scijava.prefs.PrefService
Gets a map from the preferences, indexed under the specified class.
getMap(Class<?>) - Method in interface org.scijava.prefs.PrefService
Gets a Map from the preferences.
getMap(String, String) - Method in interface org.scijava.prefs.PrefService
 
getMap(String) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a Map from the preferences.
getMap(Preferences, String) - Static method in class org.scijava.util.Prefs
Deprecated.
 
getMap(Preferences) - Static method in class org.scijava.util.Prefs
Deprecated.
Gets a Map from the preferences.
getMax() - Method in class org.scijava.widget.DefaultWidgetModel
 
getMax() - Method in interface org.scijava.widget.WidgetModel
Gets the maximum value for the module input.
getMaximum() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getMaximumGrowth() - Method in class org.scijava.util.AbstractPrimitiveArray
 
getMaximumGrowth() - Method in interface org.scijava.util.PrimitiveArray
Gets the maximal step size by which to grow the fixed-size array when running out of space.
getMaximumNumber(Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getMaximumValue() - Method in class org.scijava.command.CommandModuleItem
 
getMaximumValue() - Method in class org.scijava.module.AbstractModuleItem
 
getMaximumValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getMaximumValue() - Method in interface org.scijava.module.ModuleItem
Gets the maximum allowed value (if applicable).
getMenu(String) - Method in class org.scijava.menu.DefaultMenuService
 
getMenu() - Method in interface org.scijava.menu.MenuService
Gets the root node of the application menu structure.
getMenu(String) - Method in interface org.scijava.menu.MenuService
Gets the root node of a menu structure.
getMenu(MenuPath) - Method in class org.scijava.menu.ShadowMenu
Gets the node with the given menu path (relative to this node), or null if no such menu node.
getMenu(String) - Method in class org.scijava.menu.ShadowMenu
 
getMenuDepth() - Method in class org.scijava.menu.ShadowMenu
Gets how deep into the menu structure this node is.
getMenuEntry() - Method in class org.scijava.menu.ShadowMenu
Gets the menu entry corresponding to this node.
getMenuPath() - Method in class org.scijava.AbstractUIDetails
 
getMenuPath() - Method in class org.scijava.command.DynamicCommandInfo
 
getMenuPath() - Method in interface org.scijava.UIDetails
Gets the path to the object's suggested position in the menu structure.
getMenuPrefix(File) - Method in class org.scijava.script.DefaultScriptService
 
getMenuPrefix(File) - Method in interface org.scijava.script.ScriptService
Gets the menu path prefix for the given script directory, or null if none.
getMenuRoot() - Method in class org.scijava.AbstractUIDetails
 
getMenuRoot() - Method in class org.scijava.command.DynamicCommandInfo
 
getMenuRoot() - Method in interface org.scijava.UIDetails
Gets the name of the menu structure to which the object belongs.
getMenus() - Method in class org.scijava.platform.event.AppMenusCreatedEvent
 
getMenuString() - Method in class org.scijava.MenuPath
Gets the menu path as a string.
getMenuString(boolean) - Method in class org.scijava.MenuPath
Gets the menu path as a string, with or without the final element.
getMethodCallSyntax(String, String, String...) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getMethodCallSyntax(String, String, String...) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getMethodCallSyntax(String, String, String...) - Method in interface org.scijava.script.ScriptLanguage
 
getMethodReturnClasses(Method, Class<?>) - Static method in class org.scijava.util.GenericUtils
As GenericUtils.getFieldClasses(Field, Class), but with respect to the return type of the given Method rather than a Field.
getMethodReturnType(Method, Class<?>) - Static method in class org.scijava.util.GenericUtils
As GenericUtils.getFieldType(Field, Class), but with respect to the return type of the given Method rather than a Field.
getMillis() - Method in class org.scijava.util.TunePlayer
Gets the current note length in milliseconds, by the current tempo.
getMIMEType(Class<?>) - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the best supported MIME type matching the given Java class.
getMimeTypes() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getMimeTypes() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getMimeTypes() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getMimeTypes() - Method in interface org.scijava.script.ScriptLanguage
 
getMIMETypes() - Method in class org.scijava.ui.awt.AWTDragAndDropData
 
getMIMETypes() - Method in class org.scijava.ui.dnd.DefaultDragAndDropData
 
getMIMETypes() - Method in interface org.scijava.ui.dnd.DragAndDropData
Gets the list of supported MIME types.
getMin() - Method in class org.scijava.widget.DefaultWidgetModel
 
getMin() - Method in interface org.scijava.widget.WidgetModel
Gets the minimum value for the module input.
getMinimum() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getMinimumNumber(Class<?>) - Static method in class org.scijava.util.NumberUtils
 
getMinimumValue() - Method in class org.scijava.command.CommandModuleItem
 
getMinimumValue() - Method in class org.scijava.module.AbstractModuleItem
 
getMinimumValue() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getMinimumValue() - Method in interface org.scijava.module.ModuleItem
Gets the minimum allowed value (if applicable).
getMiscellany() - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getMnemonic() - Method in class org.scijava.MenuEntry
 
getMode() - Method in class org.scijava.io.FileHandle
 
getModifiedTime(File) - Static method in class org.scijava.util.FileUtils
Gets the Date of the file's last modification.
getModifiers() - Method in class org.scijava.display.event.input.InputEvent
 
getModifiers() - Method in class org.scijava.input.Accelerator
 
getModifiers() - Method in class org.scijava.input.DefaultInputService
 
getModifiers() - Method in interface org.scijava.input.InputService
 
getModule() - Method in class org.scijava.module.event.ModuleEvent
 
getModule() - Method in class org.scijava.widget.DefaultWidgetModel
 
getModule() - Method in interface org.scijava.widget.WidgetModel
Gets the module's associated module instance.
getModuleById(String) - Method in class org.scijava.module.DefaultModuleService
 
getModuleById(String) - Method in interface org.scijava.module.ModuleService
Gets the module with the given identifier string.
getModuleClass() - Method in class org.scijava.module.DefaultMutableModuleInfo
 
getModuleClass() - Method in interface org.scijava.module.MutableModuleInfo
Gets the module class described by this ModuleInfo.
getModuleForAccelerator(Accelerator) - Method in class org.scijava.module.DefaultModuleService
 
getModuleForAccelerator(Accelerator) - Method in interface org.scijava.module.ModuleService
Gets the module for a given keyboard shortcut.
getModuleInfo() - Method in class org.scijava.menu.ShadowMenu
Gets the module linked to this node, or null if node is not a leaf.
getModules() - Method in class org.scijava.module.DefaultModuleService
 
getModules() - Method in interface org.scijava.module.ModuleService
Gets the list of available modules.
getModuleService() - Method in interface org.scijava.command.CommandService
Deprecated.
getMutableInput(String, Class<T>) - Method in class org.scijava.command.DynamicCommandInfo
Gets the mutable input with the given name and type.
getMutableOutput(String, Class<T>) - Method in class org.scijava.command.DynamicCommandInfo
Gets the mutable output with the given name and type.
getMxSysInfo() - Static method in class org.scijava.nativelib.MxSysInfo
Find the mx.sysinfo string for the current jvm
getName() - Method in class org.scijava.AbstractBasicDetails
 
getName() - Method in class org.scijava.command.CommandModuleItem
 
getName() - Method in class org.scijava.command.DynamicCommandInfo
 
getName() - Method in class org.scijava.display.AbstractDisplay
 
getName() - Method in class org.scijava.menu.ShadowMenu
 
getName() - Method in class org.scijava.MenuEntry
 
getName() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getName() - Method in interface org.scijava.Named
Gets the name of the object.
getName(ColorRGB) - Static method in class org.scijava.util.Colors
Gets the name of the preset matching the given color.
getNames() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getNames() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getNames() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getNames() - Method in interface org.scijava.script.ScriptLanguage
 
getNativeDir() - Method in class org.scijava.nativelib.BaseJniExtractor
this is where native dependencies are extracted to (e.g.
getNativeDir() - Method in class org.scijava.nativelib.DefaultJniExtractor
 
getNativeDir() - Method in class org.scijava.nativelib.WebappJniExtractor
 
getNextService(Class<S>, Class<? extends S>) - Method in class org.scijava.service.ServiceIndex
Gets the highest priority service compatible with class c, which is lower priority than the ref service.
getNextValue() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getNonprimitiveType(Class<T>) - Static method in class org.scijava.util.ClassUtils
getNonprimitiveType(Class<T>) - Static method in class org.scijava.util.ConversionUtils
Returns the non-primitive Class closest to the given type.
getNoteLength() - Method in class org.scijava.util.TunePlayer
 
getNullValue(Class<T>) - Static method in class org.scijava.util.ClassUtils
getNullValue(Class<T>) - Static method in class org.scijava.util.ConversionUtils
Gets the "null" value for the given type.
getNumber() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getNumClicks() - Method in class org.scijava.display.event.input.MsButtonEvent
 
getObject() - Method in class org.scijava.display.event.DisplayCreatedEvent
 
getObject() - Method in class org.scijava.display.event.DisplayDeletedEvent
 
getObject() - Method in class org.scijava.object.event.ObjectEvent
 
getObjectPool() - Method in class org.scijava.widget.DefaultWidgetModel
 
getObjectPool() - Method in interface org.scijava.widget.WidgetModel
Gets the available objects for use with the widget.
getObjects(Class<T>) - Method in class org.scijava.object.DefaultObjectService
 
getObjects(Class<T>) - Method in interface org.scijava.object.ObjectService
Gets a list of all registered objects compatible with the given type.
getObjectService() - Method in interface org.scijava.display.DisplayService
Deprecated.
getOctave() - Method in class org.scijava.util.TunePlayer
 
getOpener(String) - Method in interface org.scijava.io.IOService
Gets the most appropriate IOPlugin for opening data from the given source.
getOptions(Class<O>) - Method in class org.scijava.options.DefaultOptionsService
 
getOptions() - Method in class org.scijava.options.event.OptionsEvent
 
getOptions(Class<O>) - Method in interface org.scijava.options.OptionsService
Gets the options plugin of the given class, or null if none.
getOrder() - Method in class org.scijava.io.AbstractDataHandle
 
getOrder() - Method in interface org.scijava.io.DataHandle
Returns the current order of the stream.
getOrganizationName() - Method in class org.scijava.util.POM
Gets the organization name.
getOrganizationURL() - Method in class org.scijava.util.POM
Gets the organization URL.
getOutput(String) - Method in class org.scijava.command.CommandInfo
 
getOutput(String, Class<T>) - Method in class org.scijava.command.CommandInfo
 
getOutput(String) - Method in class org.scijava.command.CommandModule
 
getOutput(String) - Method in class org.scijava.command.DynamicCommand
 
getOutput() - Method in class org.scijava.console.OutputEvent
Gets the output string.
getOutput(String) - Method in class org.scijava.module.AbstractModule
 
getOutput(String) - Method in class org.scijava.module.AbstractModuleInfo
 
getOutput(String, Class<T>) - Method in class org.scijava.module.AbstractModuleInfo
 
getOutput(String) - Method in interface org.scijava.module.Module
Gets the value of the output with the given name.
getOutput(String) - Method in interface org.scijava.module.ModuleInfo
Gets the output item with the given name.
getOutput(String, Class<T>) - Method in interface org.scijava.module.ModuleInfo
Gets the output item with the given name and type.
getOutput() - Method in class org.scijava.plugins.commands.debug.TextDisplayTest
 
getOutputField(String) - Method in class org.scijava.command.DynamicCommandInfo
Gets the Field corresponding to the given @Parameter annotated module output, or null if the output does not exist or was not declared using the @Parameter mechanism.
getOutputs() - Method in class org.scijava.module.AbstractModule
 
getOutputs() - Method in interface org.scijava.module.Module
Gets a table of output values.
getOutputStatement(String) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getOutputStatement(String) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getOutputStatement(String) - Method in interface org.scijava.script.ScriptLanguage
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.BoolArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.ByteArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.CharArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.DoubleArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.FloatArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.IntArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.LongArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayUnwrapper
 
getOutputType() - Method in class org.scijava.convert.ArrayConverters.ShortArrayWrapper
 
getOutputType() - Method in class org.scijava.convert.CastingConverter
 
getOutputType() - Method in interface org.scijava.convert.Converter
 
getOutputType() - Method in class org.scijava.convert.DefaultConverter
 
getOutputType() - Method in class org.scijava.convert.NullConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToBigDecimalConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToBigIntegerConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToDoubleConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToFloatConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToIntegerConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToLongConverter
 
getOutputType() - Method in class org.scijava.convert.NumberToShortConverter
 
getPackage() - Method in class org.scijava.util.Manifest
 
getPackaging() - Method in class org.scijava.minimaven.MavenProject
 
getPanel() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeRenderer
 
getPanel() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
getPanel() - Method in interface org.scijava.ui.viewer.DisplayViewer
Gets the display panel that hosts the gui elements.
getPanel() - Method in class org.scijava.widget.DefaultWidgetModel
 
getPanel() - Method in interface org.scijava.widget.WidgetModel
Gets the input panel intended to house the widget.
getParam(LinkedList<String>) - Method in class org.scijava.console.AbstractConsoleArgument
If the next argument is an appropriate parameter to a ConsoleArgument, retrieves it; otherwise, returns null.
getParameter() - Method in class org.scijava.command.CommandModuleItem
 
getParameter(String) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getParameter(String) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getParameter(String) - Method in interface org.scijava.script.ScriptLanguage
 
getParameter(String) - Method in class org.scijava.ui.dnd.MIMEType
Gets the value of the parameter with the given name, or null if none.
getParameters() - Method in class org.scijava.ui.dnd.MIMEType
Gets the parameter names associated with this MIME type.
getParent() - Method in class org.scijava.console.MultiPrintStream
 
getParent() - Method in class org.scijava.menu.ShadowMenu
Gets this node's parent, or null if it is a root node.
getParent() - Method in class org.scijava.minimaven.MavenProject
 
getParent(Thread) - Method in class org.scijava.thread.DefaultThreadService
 
getParent(Thread) - Method in interface org.scijava.thread.ThreadService
Returns the thread that called the specified thread.
getParent() - Method in class org.scijava.ui.swing.SwingDialog
Gets the frame in which the dialog is displayed.
getParentArtifactId() - Method in class org.scijava.util.POM
Gets the POM's parent artifactId.
getParentGroupId() - Method in class org.scijava.util.POM
Gets the POM's parent groupId.
getParentVersion() - Method in class org.scijava.util.POM
Gets the POM's parent artifactId.
getParser() - Method in class org.scijava.parse.eval.AbstractEvaluator
 
getParser() - Method in interface org.scijava.parse.eval.Evaluator
Gets the parser used when evaluating expressions.
getPath() - Method in class org.scijava.script.ScriptInfo
Gets the path to the script on disk.
getPath(File) - Static method in class org.scijava.util.FileUtils
Gets the absolute path to the given file, with the directory separator standardized to forward slash, like most platforms use.
getPath(String, String) - Static method in class org.scijava.util.FileUtils
Gets a standardized path based on the given one, with the directory separator standardized from the specific separator to forward slash, like most platforms use.
getPath() - Method in class org.scijava.util.XML
Gets the path to the XML document, or null if none.
getPersistKey() - Method in class org.scijava.command.CommandModuleItem
 
getPersistKey() - Method in class org.scijava.module.AbstractModuleItem
 
getPersistKey() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getPersistKey() - Method in interface org.scijava.module.ModuleItem
Gets the key to use for saving the value persistently.
getPlatformLibraryName(String) - Static method in class org.scijava.nativelib.NativeLibraryUtil
Returns the full file name (without path) of the native library.
getPlatformLibraryPath() - Static method in class org.scijava.nativelib.NativeLibraryUtil
Returns the path to the native library.
getPlatformService() - Method in class org.scijava.platform.AbstractPlatform
 
getPlugin(Class<P>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPlugin(Class<P>, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPlugin(String) - Method in class org.scijava.plugin.DefaultPluginService
 
getPlugin(Class<P>) - Method in interface org.scijava.plugin.PluginService
Gets the first available plugin of the given class, or null if none.
getPlugin(Class<P>, Class<PT>) - Method in interface org.scijava.plugin.PluginService
Gets the first available plugin of the given class, or null if none.
getPlugin(String) - Method in interface org.scijava.plugin.PluginService
Gets the first available plugin of the given class name, or null if none.
getPluginClass() - Method in class org.scijava.command.CommandInfo
 
getPluginClass() - Method in class org.scijava.plugin.PluginInfo
Obtains the Class of the item objects, if that class has already been loaded.
getPluginIndex() - Method in class org.scijava.Context
 
getPlugins() - Method in class org.scijava.plugin.DefaultPluginService
 
getPlugins(Class<PT>) - Method in class org.scijava.plugin.PluginIndex
Gets a list of registered plugins compatible with the given type.
getPlugins() - Method in interface org.scijava.plugin.PluginService
Gets the list of known plugins.
getPlugins() - Method in interface org.scijava.plugin.PTService
Gets the plugins managed by this service.
getPluginService() - Method in interface org.scijava.display.DisplayService
Deprecated.
getPluginService() - Method in interface org.scijava.plugin.PTService
Deprecated.
getPluginsOfClass(Class<P>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfClass(Class<P>, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfClass(String) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfClass(String, Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfClass(Class<P>) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins of the given class.
getPluginsOfClass(Class<P>, Class<PT>) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins of the given class.
getPluginsOfClass(String) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins with the given class name.
getPluginsOfClass(String, Class<PT>) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins with the given class name.
getPluginsOfType(Class<PT>) - Method in class org.scijava.plugin.DefaultPluginService
 
getPluginsOfType(Class<PT>) - Method in interface org.scijava.plugin.PluginService
Gets the list of plugins of the given type (e.g., Service).
getPluginType() - Method in interface org.scijava.app.AppService
 
getPluginType() - Method in class org.scijava.command.DefaultCommandService
 
getPluginType() - Method in interface org.scijava.console.ConsoleService
 
getPluginType() - Method in class org.scijava.convert.AbstractConvertService
 
getPluginType() - Method in interface org.scijava.io.DataHandleService
 
getPluginType() - Method in interface org.scijava.io.IOService
 
getPluginType() - Method in interface org.scijava.options.OptionsService
 
getPluginType() - Method in class org.scijava.platform.DefaultPlatformService
 
getPluginType(Class<P>) - Static method in class org.scijava.plugin.DefaultPluginService
Gets the plugin type of the given plugin class, as declared by its @Plugin annotation (i.e., Plugin.type()).
getPluginType() - Method in class org.scijava.plugin.PluginInfo
Gets the type of plugin described by the metadata.
getPluginType() - Method in interface org.scijava.plugin.PTService
Gets the type of plugins managed by this service.
getPluginType() - Method in class org.scijava.plugins.scripting.matlab.DefaultMATLABService
 
getPluginType() - Method in interface org.scijava.run.RunService
 
getPluginType() - Method in interface org.scijava.script.ScriptHeaderService
 
getPluginType() - Method in interface org.scijava.script.ScriptService
 
getPluginType() - Method in class org.scijava.text.DefaultTextService
 
getPluginType() - Method in interface org.scijava.tool.ToolService
 
getPluginType() - Method in interface org.scijava.ui.dnd.DragAndDropService
 
getPluginType() - Method in interface org.scijava.widget.WidgetService
 
getPOM() - Method in class org.scijava.app.AbstractApp
 
getPOM() - Method in interface org.scijava.app.App
Gets the Maven POM containing metadata about the application.
getPOM(Class<?>, String, String) - Static method in class org.scijava.util.POM
Gets the Maven POM associated with the given class.
getPOMName() - Method in class org.scijava.minimaven.Coordinate
 
getPOMName(boolean) - Method in class org.scijava.minimaven.Coordinate
 
getPrecedence() - Method in class org.scijava.parse.Operator
 
getPrefix(int) - Method in class org.scijava.log.AbstractLogService
 
getPresets() - Method in class org.scijava.command.CommandInfo
Gets the table of items with fixed, preset values.
getPreviousValue() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getPrevService(Class<S>, Class<? extends S>) - Method in class org.scijava.service.ServiceIndex
Gets the lowest priority service compatible with class c, which is higher priority than the ref service.
getPrimitiveType(Class<T>) - Static method in class org.scijava.util.ConversionUtils
Returns the primitive Class closest to the given type.
getPriority() - Method in class org.scijava.AbstractUIDetails
 
getPriority() - Method in class org.scijava.command.DynamicCommandInfo
 
getPriority() - Method in class org.scijava.plugin.AbstractRichPlugin
 
getPriority() - Method in interface org.scijava.Prioritized
Gets the sort priority of the object.
getProblems() - Method in class org.scijava.command.CommandInfo
 
getProblems() - Method in class org.scijava.command.DynamicCommandInfo
 
getProblems() - Method in class org.scijava.module.MethodRef
 
getProblems() - Method in interface org.scijava.module.ModuleInfo
 
getProblems() - Method in interface org.scijava.Validated
Gets the list of problems encountered while initializing the object.
getProcessor() - Method in class org.scijava.module.event.ModulePostprocessEvent
 
getProcessor() - Method in class org.scijava.module.event.ModulePreprocessEvent
 
getProcessor() - Method in class org.scijava.module.event.ModuleProcessEvent
 
getProgram(String...) - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getProgram(String...) - Method in class org.scijava.script.AdaptedScriptLanguage
 
getProgram(String...) - Method in interface org.scijava.script.ScriptLanguage
 
getProgressMaximum() - Method in class org.scijava.app.event.StatusEvent
Gets progress maximum.
getProgressValue() - Method in class org.scijava.app.event.StatusEvent
Gets progress value.
getProjectDescription() - Method in class org.scijava.util.POM
Gets the project description.
getProjectInceptionYear() - Method in class org.scijava.util.POM
Gets the project inception year.
getProjectName() - Method in class org.scijava.util.POM
Gets the project name.
getProjectURL() - Method in class org.scijava.util.POM
Gets the project URL.
getProperty(String) - Method in class org.scijava.minimaven.MavenProject
Returns the (possibly project-specific) value of a property.
getQueryMap() - Method in class org.scijava.io.URILocation
 
getQueryValue(String) - Method in class org.scijava.io.URILocation
 
getRandomAccessFile() - Method in class org.scijava.io.FileHandle
Gets the random access file object backing this FileHandle.
getReader() - Method in class org.scijava.script.AbstractScriptContext
 
getReader() - Method in class org.scijava.script.ScriptInfo
Gets a reader which delivers the script's content.
getReason() - Method in class org.scijava.module.event.ModuleCanceledEvent
 
getRecentFiles() - Method in class org.scijava.io.DefaultRecentFileService
 
getRecentFiles() - Method in interface org.scijava.io.RecentFileService
Gets the list of recent files.
getRed(int, int) - Method in class org.scijava.ui.ARGBPlane
 
getRed() - Method in class org.scijava.util.ColorRGB
 
getRegex() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
 
getRepositories() - Method in class org.scijava.minimaven.MavenProject
 
getRepositories(Set<String>) - Method in class org.scijava.minimaven.MavenProject
 
getResource(String) - Method in class org.scijava.minimaven.JarClassLoader
 
getResourceAsStream(String) - Method in class org.scijava.minimaven.JarClassLoader
 
getResourceAsStream(String, boolean) - Method in class org.scijava.minimaven.JarClassLoader
 
getResult() - Method in exception org.scijava.minimaven.JavaCompiler.CompileError
 
getResult() - Method in interface org.scijava.script.CodeGenerator
 
getResult() - Method in class org.scijava.script.CodeGeneratorJava
 
getReturnValue() - Method in class org.scijava.script.ScriptModule
Gets the return value of the script.
getRoot() - Method in class org.scijava.minimaven.MavenProject
 
getRowCount() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getSampleRate() - Method in class org.scijava.util.TunePlayer
 
getSaver(D, String) - Method in interface org.scijava.io.IOService
Gets the most appropriate IOPlugin for saving data to the given destination.
getSCMConnection() - Method in class org.scijava.util.POM
Gets the SCM connection string.
getSCMDeveloperConnection() - Method in class org.scijava.util.POM
Gets the SCM developerConnection string.
getSCMTag() - Method in class org.scijava.util.POM
Gets the SCM tag.
getSCMURL() - Method in class org.scijava.util.POM
Gets the SCM URL.
getScopes() - Method in class org.scijava.script.AbstractScriptContext
 
getScript(File) - Method in class org.scijava.script.DefaultScriptService
 
getScript(File) - Method in interface org.scijava.script.ScriptService
Gets the cached ScriptInfo metadata for the script at the given file, creating it if it does not already exist.
getScriptDirectories() - Method in class org.scijava.script.DefaultScriptService
 
getScriptDirectories() - Method in interface org.scijava.script.ScriptService
Gets the base directories to scan for scripts.
getScriptEngine() - Method in class org.scijava.plugins.scripting.beanshell.BeanshellScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.clojure.ClojureScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.java.JavaScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.javascript.JavaScriptScriptLanguage
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.jython.DefaultJythonService
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.jython.JythonScriptLanguage
 
getScriptEngine() - Method in interface org.scijava.plugins.scripting.jython.JythonService
 
getScriptEngine() - Method in class org.scijava.plugins.scripting.matlab.MATLABScriptLanguage
 
getScriptEngine() - Method in class org.scijava.script.AdaptedScriptLanguage
 
getScripts() - Method in class org.scijava.script.DefaultScriptService
 
getScripts() - Method in interface org.scijava.script.ScriptService
Gets all available scripts.
getScrollPane() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
getSearchField() - Method in class org.scijava.ui.swing.commands.CommandFinderPanel
Gets the JTextField component for specifying the search string.
getSelectionGroup() - Method in class org.scijava.AbstractUIDetails
 
getSelectionGroup() - Method in class org.scijava.command.DynamicCommandInfo
 
getSelectionGroup() - Method in interface org.scijava.UIDetails
Gets the name of the selection group to which the object belongs.
getService(Class<S>) - Method in class org.scijava.Context
Gets the service of the given class, or null if there is no matching service.
getService(String) - Method in class org.scijava.Context
Gets the service of the given class name (useful for scripts).
getService(Class<S>) - Method in class org.scijava.service.ServiceIndex
Gets the first available service compatible with the given class.
getServiceIndex() - Method in class org.scijava.Context
 
getShortName() - Method in class org.scijava.AbstractGateway
 
getShortName() - Method in interface org.scijava.Gateway
Gets a very succinct name for use referring to this gateway, e.g.
getShortName() - Method in class org.scijava.SciJava
 
getSingleInput(Module, Class<T>) - Method in class org.scijava.module.DefaultModuleService
 
getSingleInput(Module, Collection<Class<?>>) - Method in class org.scijava.module.DefaultModuleService
 
getSingleInput(Module, Class<T>) - Method in interface org.scijava.module.ModuleService
Checks the given module for a solitary unresolved fillable input of the given type, returning the relevant ModuleItem if found, or null if not exactly one unresolved fillable input of that type.
getSingleInput(Module, Collection<Class<?>>) - Method in interface org.scijava.module.ModuleService
As ModuleService.getSingleInput(Module, Class) but will match with a set of potential classes, at the cost of generic parameter safety.
getSingleInput(Module, Class<?>) - Method in class org.scijava.module.process.AbstractSingleInputPreprocessor
Helper method to look up the name of singleton module inputs of a given type.
getSingleOutput(Module, Class<T>) - Method in class org.scijava.module.DefaultModuleService
 
getSingleOutput(Module, Collection<Class<?>>) - Method in class org.scijava.module.DefaultModuleService
 
getSingleOutput(Module, Class<T>) - Method in interface org.scijava.module.ModuleService
Checks the given module for a solitary unresolved output of the given type, returning the relevant ModuleItem if found, or null if not exactly one unresolved output of that type.
getSingleOutput(Module, Collection<Class<?>>) - Method in interface org.scijava.module.ModuleService
As ModuleService.getSingleOutput(Module, Class) but will match with a set of potential classes, at the cost of generic parameter safety.
getSoftMax() - Method in class org.scijava.widget.DefaultWidgetModel
 
getSoftMax() - Method in interface org.scijava.widget.WidgetModel
Gets the "soft" maximum value for the module input.
getSoftMaximum() - Method in class org.scijava.module.AbstractModuleItem
 
getSoftMaximum() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getSoftMaximum() - Method in interface org.scijava.module.ModuleItem
Gets the "soft" maximum value (if applicable).
getSoftMin() - Method in class org.scijava.widget.DefaultWidgetModel
 
getSoftMin() - Method in interface org.scijava.widget.WidgetModel
Gets the "soft" minimum value for the module input.
getSoftMinimum() - Method in class org.scijava.module.AbstractModuleItem
 
getSoftMinimum() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getSoftMinimum() - Method in interface org.scijava.module.ModuleItem
Gets the "soft" minimum value (if applicable).
getSource() - Method in class org.scijava.console.OutputEvent
Gets the source of the output.
getSource() - Method in class org.scijava.io.event.DataOpenedEvent
Gets the source from which data was opened.
getSourceDirectory() - Method in class org.scijava.minimaven.MavenProject
 
getSourcePath() - Method in class org.scijava.minimaven.MavenProject
 
getSpecificationTitle() - Method in class org.scijava.util.Manifest
 
getSpecificationVendor() - Method in class org.scijava.util.Manifest
 
getSpecificationVersion() - Method in class org.scijava.util.Manifest
 
getStackDump() - Static method in class org.scijava.util.DebugUtils
Provides a complete stack dump of all threads.
getStackTrace() - Method in class org.scijava.event.SciJavaEvent
Gets the stack trace of the calling thread when the event was published.
getStackTrace(Throwable) - Static method in class org.scijava.util.DebugUtils
Extracts the given exception's corresponding stack trace to a string.
getStatusBar() - Method in class org.scijava.ui.awt.AWTUI
 
getStatusBar() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getStatusBar() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava status bar, or null if not applicable.
getStatusMessage(String, StatusEvent) - Method in class org.scijava.app.DefaultStatusService
 
getStatusMessage() - Method in class org.scijava.app.event.StatusEvent
Gets status message, or null for no change.
getStatusMessage(String, StatusEvent) - Method in interface org.scijava.app.StatusService
Gets the status message of the given event.
getStatusMessage(StatusEvent) - Method in class org.scijava.ui.DefaultUIService
 
getStatusMessage(StatusEvent) - Method in interface org.scijava.ui.UIService
Gets the status message associated with the given event.
getStepSize() - Method in class org.scijava.command.CommandModuleItem
 
getStepSize() - Method in class org.scijava.module.AbstractModuleItem
 
getStepSize() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getStepSize() - Method in interface org.scijava.module.ModuleItem
Gets the preferred step size to use when rendering the item in a user interface (if applicable).
getStepSize() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getStepSize() - Method in class org.scijava.widget.DefaultWidgetModel
 
getStepSize() - Method in interface org.scijava.widget.WidgetModel
Gets the step size between values for the module input.
getSubscriberLog() - Method in class org.scijava.plugins.commands.debug.ShowSubscribers
 
getSubscribers(Class<E>) - Method in class org.scijava.event.DefaultEventService
 
getSubscribers(Class<E>) - Method in interface org.scijava.event.EventService
Gets a list of all subscribers to the given event class (and subclasses thereof).
getSystemClipboard() - Method in class org.scijava.ui.awt.AWTUI
 
getSystemClipboard() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getSystemClipboard() - Method in interface org.scijava.ui.UserInterface
Gets the system clipboard associated with this UI, or null if not applicable.
getSystemProperties() - Static method in class org.scijava.plugins.commands.debug.SystemInformation
 
getSystemProperty() - Method in interface org.scijava.app.App
A system property which, if set, overrides the base directory of the application.
getSystemProperty(String, String) - Static method in class org.scijava.minimaven.MiniMaven
 
getTarget() - Method in class org.scijava.minimaven.MavenProject
 
getTargetPlatforms() - Method in class org.scijava.platform.DefaultPlatformService
 
getTargetPlatforms() - Method in interface org.scijava.platform.PlatformService
Gets the platform handlers applicable to this platform.
getTempo() - Method in class org.scijava.util.TunePlayer
 
getTerminator() - Method in class org.scijava.parse.Group
 
getText() - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeData
 
getText() - Method in class org.scijava.widget.DefaultWidgetModel
 
getText() - Method in interface org.scijava.widget.WidgetModel
Gets the input's value rendered as a string.
getTextPane() - Method in class org.scijava.ui.swing.console.SwingConsolePane
 
getThreadContext(Thread) - Method in class org.scijava.thread.DefaultThreadService
 
getThreadContext(Thread) - Method in interface org.scijava.thread.ThreadService
Analyzes the Context of the given thread.
getTimestamp() - Method in class org.scijava.event.EventDetails
 
getTitle() - Method in class org.scijava.AbstractGateway
 
getTitle() - Method in interface org.scijava.app.App
Gets the title of the application.
getTitle() - Method in class org.scijava.command.CommandInfo
 
getTitle() - Method in class org.scijava.command.DynamicCommandInfo
 
getTitle() - Method in interface org.scijava.Gateway
 
getTitle() - Method in interface org.scijava.module.ModuleInfo
 
getTitle() - Method in class org.scijava.ui.swing.SwingDialog
Gets the title string that will be displayed in the dialog title bar.
getTitle() - Method in interface org.scijava.UIDetails
Gets an appropriate title for the object, for use in a user interface.
getToken() - Method in class org.scijava.parse.Token
Gets the token's sequence of characters.
getTone(int, char) - Method in class org.scijava.util.TunePlayer
Gets the value of the given tone for the current octave.
getTool(String) - Method in class org.scijava.tool.DefaultToolService
 
getTool() - Method in class org.scijava.tool.event.ToolEvent
 
getTool(String) - Method in interface org.scijava.tool.ToolService
 
getTool(Class<T>) - Method in interface org.scijava.tool.ToolService
Get a tool given its class.
getToolBar() - Method in class org.scijava.ui.awt.AWTUI
 
getToolBar() - Method in class org.scijava.ui.swing.AbstractSwingUI
 
getToolBar() - Method in interface org.scijava.ui.UserInterface
Gets the main SciJava toolbar, or null if not applicable.
getTools() - Method in class org.scijava.tool.DefaultToolService
 
getTools() - Method in interface org.scijava.tool.ToolService
 
getTopFrame(Component) - Static method in class org.scijava.ui.swing.StaticSwingUtils
Finds the top-level JFrame in the component tree containing a given component.
getTopLeft() - Method in class org.scijava.util.IntRect
Gets the top left coordinate of the rectangle.
getTopLeft() - Method in class org.scijava.util.RealRect
Gets the top left coordinate of the rectangle.
getTransferData(DataFlavor) - Method in class org.scijava.ui.awt.AWTClipboard
 
getTransferDataFlavors() - Method in class org.scijava.ui.awt.AWTClipboard
 
getTreeCellEditorComponent(JTree, Object, boolean, boolean, boolean, int) - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeEditor
 
getTreeCellRendererComponent(JTree, Object, boolean, boolean, boolean, int, boolean) - Method in class org.scijava.swing.checkboxtree.CheckBoxNodeRenderer
 
getType() - Method in class org.scijava.command.CommandModuleItem
 
getType() - Method in interface org.scijava.console.ConsoleArgument
 
getType() - Method in interface org.scijava.console.ConsoleService
 
getType() - Method in class org.scijava.convert.AbstractConverter
 
getType() - Method in class org.scijava.convert.AbstractConvertService
 
getType() - Method in interface org.scijava.io.DataHandleService
 
getType() - Method in class org.scijava.io.FileHandle
 
getType() - Method in interface org.scijava.io.IOPlugin
 
getType() - Method in interface org.scijava.io.IOService
 
getType() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getType() - Method in interface org.scijava.module.ModuleItem
Gets the type of the item.
getType(E) - Method in class org.scijava.object.ObjectIndex
Return the type by which to index the object.
getType(PluginInfo<?>) - Method in class org.scijava.plugin.PluginIndex
Overrides the type by which the entries are indexed.
getType() - Method in interface org.scijava.run.CodeRunner
 
getType() - Method in interface org.scijava.run.RunService
 
getType() - Method in interface org.scijava.script.ScriptHeader
 
getType() - Method in interface org.scijava.script.ScriptHeaderService
 
getType() - Method in class org.scijava.text.DefaultTextService
 
getType() - Method in interface org.scijava.text.TextFormat
 
getType() - Method in interface org.scijava.Typed
Gets the type associated with the object.
getType() - Method in interface org.scijava.ui.dnd.DragAndDropService
 
getType() - Method in class org.scijava.ui.dnd.FileDragAndDropHandler
 
getType() - Method in class org.scijava.ui.dnd.ListDragAndDropHandler
 
getType() - Method in class org.scijava.ui.dnd.ScriptFileDragAndDropHandler
 
getType() - Method in interface org.scijava.widget.InputWidget
 
getType() - Method in interface org.scijava.widget.WidgetService
 
getTypeParameter(Type, Class<?>, int) - Static method in class org.scijava.util.GenericUtils
Gets the given type's nth type parameter of the specified class.
getTypes(Class<?>) - Static method in class org.scijava.object.ObjectIndex
Gets a new set containing the type and all its supertypes.
getTypes(Field, Class<?>) - Static method in class org.scijava.util.ClassUtils
getUI() - Method in class org.scijava.ui.AbstractInputHarvesterPlugin
Gets the name (or class name) of the input harvester's affiliated UI.
getUI() - Method in class org.scijava.ui.awt.widget.AWTInputHarvester
 
getUI(String) - Method in class org.scijava.ui.DefaultUIService
 
getUI() - Method in class org.scijava.ui.event.UIEvent
Gets the user interface.
getUI() - Method in class org.scijava.ui.swing.options.OptionsLookAndFeel
Deprecated.
getUI() - Method in class org.scijava.ui.swing.widget.SwingInputHarvester
 
getUI() - Method in class org.scijava.ui.swing.widget.SwingMdiInputHarvester
 
getUI(String) - Method in interface org.scijava.ui.UIService
Gets the UI with the given name (or class name).
getURI() - Method in class org.scijava.io.FileLocation
 
getURI() - Method in interface org.scijava.io.Location
Gets the location expressed as a URI, or null if the location cannot be expressed as such.
getURI() - Method in class org.scijava.io.URILocation
 
getURI() - Method in class org.scijava.io.URLLocation
Gets the associated URI, or null if this URL is not formatted strictly according to to RFC2396 and cannot be converted to a URI.
getURL() - Method in class org.scijava.io.URLLocation
Gets the associated URL.
getURL() - Method in class org.scijava.script.ScriptInfo
Gets the URL of the script.
getValidater() - Method in class org.scijava.command.CommandModuleItem
 
getValidater() - Method in class org.scijava.module.AbstractModuleItem
 
getValidater() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getValidater() - Method in interface org.scijava.module.ModuleItem
Gets the function that is called to validate the item's value.
getValue(Module) - Method in class org.scijava.module.AbstractModuleItem
 
getValue(Module) - Method in interface org.scijava.module.ModuleItem
Gets the item's current value with respect to the given module.
getValue() - Method in class org.scijava.ui.awt.widget.AWTButtonWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTChoiceWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTFileWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTMessageWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTNumberWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTObjectWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTTextWidget
 
getValue() - Method in class org.scijava.ui.awt.widget.AWTToggleWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SpinnerTypedNumberModel
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingButtonWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingChoiceRadioWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingChoiceWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingColorWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingDateWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingFileWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingMessageWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingNumberWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingObjectWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingTextWidget
 
getValue() - Method in class org.scijava.ui.swing.widget.SwingToggleWidget
 
getValue(int) - Method in class org.scijava.util.BoolArray
 
getValue(int) - Method in class org.scijava.util.ByteArray
 
getValue(int) - Method in class org.scijava.util.CharArray
 
getValue(Field, Object) - Static method in class org.scijava.util.ClassUtils
Gets the given field's value of the specified object instance, or null if the value cannot be obtained.
getValue(int) - Method in class org.scijava.util.DoubleArray
 
getValue(int) - Method in class org.scijava.util.FloatArray
 
getValue(int) - Method in class org.scijava.util.IntArray
 
getValue(int) - Method in class org.scijava.util.LongArray
 
getValue(int) - Method in class org.scijava.util.ObjectArray
 
getValue(int) - Method in class org.scijava.util.ShortArray
 
getValue(String) - Method in class org.scijava.widget.AbstractInputPanel
 
getValue() - Method in class org.scijava.widget.DefaultWidgetModel
 
getValue(String) - Method in interface org.scijava.widget.InputPanel
Returns the value of the given widget's input.
getValue() - Method in interface org.scijava.widget.InputWidget
Gets the current widget value.
getValue() - Method in interface org.scijava.widget.WidgetModel
Gets the current value of the module input.
getValueAt(int, int) - Method in class org.scijava.ui.swing.commands.CommandFinderPanel.CommandTableModel
 
getVar(String) - Method in class org.scijava.util.ReflectedUniverse
Returns the value of a variable or field in the universe.
getVersion() - Method in class org.scijava.AbstractGateway
 
getVersion() - Method in interface org.scijava.app.App
Gets the version of the application.
getVersion() - Method in class org.scijava.minimaven.Coordinate
 
getVersion() - Method in class org.scijava.minimaven.MavenProject
 
getVersion() - Method in interface org.scijava.module.ModuleInfo
 
getVersion() - Method in class org.scijava.plugin.PluginInfo
 
getVersion() - Method in class org.scijava.script.ScriptInfo
 
getVersion() - Method in class org.scijava.util.Manifest
 
getVersion() - Method in class org.scijava.util.POM
Gets the POM's version.
getVersion(Class<?>) - Static method in class org.scijava.util.VersionUtils
Looks up the version of the specified class using any means available, appending the build number to any SNAPSHOT version.
getVersion(Class<?>, String, String) - Static method in class org.scijava.util.VersionUtils
Looks up the version of the specified class using any means available, appending the build number to any SNAPSHOT version.
getVersion() - Method in interface org.scijava.Versioned
Gets the version of the object.
getVersionedLibraryName(Class<?>, String) - Static method in class org.scijava.nativelib.NativeLibraryUtil
Returns the Maven-versioned file name of the native library.
getVersionFromManifest(Class<?>) - Static method in class org.scijava.util.VersionUtils
Looks up the version of the specified class using a JAR manifest if available, appending the build number to any SNAPSHOT version.
getVersionFromPOM(Class<?>, String, String) - Static method in class org.scijava.util.VersionUtils
Looks up the version of the specified class using the specified POM, or base POM directory if groupId and artifactId are null.
getViewerPlugins() - Method in class org.scijava.ui.DefaultUIService
 
getViewerPlugins() - Method in interface org.scijava.ui.UIService
Gets the list of known viewer plugins.
getVisibility() - Method in class org.scijava.command.CommandModuleItem
 
getVisibility() - Method in class org.scijava.module.AbstractModuleItem
 
getVisibility() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getVisibility() - Method in interface org.scijava.module.ModuleItem
Gets the visibility of the item.
getVisibleUIs() - Method in class org.scijava.ui.DefaultUIService
 
getVisibleUIs() - Method in interface org.scijava.ui.UIService
Gets the user interfaces that are currently visible.
getWeight() - Method in class org.scijava.MenuEntry
 
getWheelRotation() - Method in class org.scijava.display.event.input.MsWheelEvent
 
getWidget(String) - Method in class org.scijava.widget.AbstractInputPanel
 
getWidget(String) - Method in interface org.scijava.widget.InputPanel
Gets the widget with the provided name.
getWidgetComponentType() - Method in class org.scijava.ui.awt.widget.AWTInputPanel
 
getWidgetComponentType() - Method in class org.scijava.ui.swing.widget.SwingInputPanel
 
getWidgetComponentType() - Method in interface org.scijava.widget.InputPanel
Gets the type of the UI component housing the panel's widgets.
getWidgetCount() - Method in class org.scijava.widget.AbstractInputPanel
 
getWidgetCount() - Method in interface org.scijava.widget.InputPanel
Gets the number of active widgets in the input panel.
getWidgetLabel() - Method in class org.scijava.widget.DefaultWidgetModel
 
getWidgetLabel() - Method in interface org.scijava.widget.WidgetModel
Gets the text to use when labeling this widget.
getWidgetStyle() - Method in class org.scijava.command.CommandModuleItem
 
getWidgetStyle() - Method in class org.scijava.module.AbstractModuleItem
 
getWidgetStyle() - Method in class org.scijava.module.DefaultMutableModuleItem
 
getWidgetStyle() - Method in interface org.scijava.module.ModuleItem
Gets the preferred widget style to use when rendering the item in a user interface.
getWidth() - Method in class org.scijava.ui.ARGBPlane
 
getWindow() - Method in class org.scijava.display.event.window.WinEvent
Gets the actual UI-specific window.
getWindow() - Method in class org.scijava.ui.swing.viewer.text.SwingTextDisplayPanel
 
getWindow() - Method in class org.scijava.ui.viewer.AbstractDisplayViewer
 
getWindow() - Method in interface org.scijava.ui.viewer.DisplayPanel
Gets the window housing this panel.
getWindow() - Method in interface org.scijava.ui.viewer.DisplayViewer
Gets the window in which the view is displayed.
getWorkSpaceBounds() - Static method in class org.scijava.ui.swing.StaticSwingUtils
 
getWriter() - Method in class org.scijava.script.AbstractScriptContext
 
getX() - Method in class org.scijava.display.event.input.InputEvent
 
getX() - Method in class org.scijava.input.DefaultInputService
 
getX() - Method in interface org.scijava.input.InputService
Gets the last observed X coordinate of the mouse cursor, relative to a specific display.
getY() - Method in class org.scijava.display.event.input.InputEvent
 
getY() - Method in class org.scijava.input.DefaultInputService
 
getY() - Method in interface org.scijava.input.InputService
Gets the last observed Y coordinate of the mouse cursor, relative to a specific display.
GHOSTWHITE - Static variable in class org.scijava.util.Colors
 
GOLD - Static variable in class org.scijava.util.Colors
 
GOLDENROD - Static variable in class org.scijava.util.Colors
 
GRAY - Static variable in class org.scijava.util.Colors
 
GREATER_THAN - Static variable in class org.scijava.parse.Operators
 
GREATER_THAN_OR_EQUAL - Static variable in class org.scijava.parse.Operators
 
greaterThan(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
greaterThan(Comparable<T>, T) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
greaterThan(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.GREATER_THAN operator.
greaterThanOrEqual(Object, Object) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
greaterThanOrEqual(Comparable<T>, T) - Method in class org.scijava.parse.eval.DefaultEvaluator
 
greaterThanOrEqual(Object, Object) - Method in interface org.scijava.parse.eval.StandardEvaluator
Applies the Operators.GREATER_THAN_OR_EQUAL operator.
GREEN - Static variable in class org.scijava.util.Colors
 
GREENYELLOW - Static variable in class org.scijava.util.Colors
 
GREY - Static variable in class org.scijava.util.Colors
 
GroovyCompiledScript - Class in org.scijava.plugins.scripting.groovy
Groovy CompiledScript implementation.
GroovyCompiledScript(GroovyScriptEngine, Class<?>) - Constructor for class org.scijava.plugins.scripting.groovy.GroovyCompiledScript
 
GroovyScriptEngine - Class in org.scijava.plugins.scripting.groovy
Groovy ScriptEngine implementation.
GroovyScriptEngine() - Constructor for class org.scijava.plugins.scripting.groovy.GroovyScriptEngine
 
GroovyScriptLanguage - Class in org.scijava.plugins.scripting.groovy
An adapter of the Groovy interpreter to the SciJava scripting interface.
GroovyScriptLanguage() - Constructor for class org.scijava.plugins.scripting.groovy.GroovyScriptLanguage
 
Group - Class in org.scijava.parse
A group is a special N-ary operator delineated by a left-hand symbol and a right-hand symbol, with comma-separated arguments.
Group(String, String, double) - Constructor for class org.scijava.parse.Group
 
groupId - Variable in class org.scijava.minimaven.Coordinate
 
guessMxSysInfo() - Static method in class org.scijava.nativelib.MxSysInfo
Make a spirited attempt at guessing what the mx.sysinfo for the current jvm might be.

H

handle(LinkedList<String>) - Method in class org.scijava.command.console.RunArgument
Deprecated.
 
handle(LinkedList<String>) - Method in interface org.scijava.console.ConsoleArgument
Handles the front of the given list of arguments.
handle(LinkedList<String>) - Method in class org.scijava.console.HeadlessArgument
 
handle(LinkedList<String>) - Method in class org.scijava.console.SystemPropertyArgument
 
handle(LinkedList<String>) - Method in class org.scijava.io.console.OpenArgument
 
handle(Exception) - Method in class org.scijava.log.DefaultUncaughtExceptionHandler
 
handle(LinkedList<String>) - Method in class org.scijava.main.console.MainArgument
 
handle(LinkedList<String>) - Method in class org.scijava.run.console.RunArgument
 
handle(LinkedList<String>) - Method in class org.scijava.script.console.RunScriptArgument
Deprecated.