Modifier and Type | Field and Description |
---|---|
private MTBRegion2D |
NeuriteExtractor2D.neuronCoarseSoma
2D region of the coarse cell body region (soma).
|
Modifier and Type | Method and Description |
---|---|
private MTBRegion2D |
NeuriteExtractor2D.generateCoarseSoma()
Compute a coarse neuron cell body region (soma).
|
Modifier and Type | Method and Description |
---|---|
private boolean |
NeuriteDetector2DAlgos.testRegions(MTBRegion2D cell,
MTBRegion2D core)
Test whether the number of pixels from a neuron region contains more than
90% of the pixels from a nucleus region.
|
private boolean |
NeuriteDetector2DAlgos.testRegions2(MTBRegion2D cell,
MTBRegion2D core)
Test whether a single pixel from a neuron region contains a pixel from a
nucleus region.
|
Modifier and Type | Method and Description |
---|---|
private boolean |
NucleusSeparator2DPeakSearch_RegionSeparator.gratwanderung(int x,
int y,
MTBRegion2D tempreg)
Function to travers ridges.
|
Modifier and Type | Method and Description |
---|---|
protected Integer |
ParticleDetectorUWT2D.getLabelMostInRegion(MTBRegion2D reg,
MTBImage img) |
protected Vector<Integer> |
ParticleDetectorUWT2D.getLabelsInRegion(MTBRegion2D reg,
MTBImage img) |
protected double |
ParticleDetectorUWT2D.logPofRegion(MTBRegion2D reg,
MTBImage img,
MTBImageHistogram cumHist) |
protected double |
ParticleDetectorUWT2D.meanOfRegion(MTBRegion2D reg,
MTBImage img) |
Modifier and Type | Method and Description |
---|---|
protected MTBImage |
ParticleDetectorUWT2D.regionsToBinImage(MTBImage img,
MTBImage mask,
Vector<MTBRegion2D> regs)
Create binary image from a set of regions.
|
Modifier and Type | Field and Description |
---|---|
private Vector<MTBRegion2D> |
StromulesDetector2D.identifiedRegions
List of validated plastid regions with stromules.
|
Modifier and Type | Method and Description |
---|---|
private double |
CellTrackerBipartite.getAreaFraction(MTBRegion2D r,
MTBRegion2D s) |
private double |
CellTrackerBipartite.getDistance(MTBRegion2D r,
MTBRegion2D s) |
Modifier and Type | Field and Description |
---|---|
private MTBRegion2D |
XylemGrower.GrowingRegion2D.growingRegion |
Modifier and Type | Method and Description |
---|---|
private MTBRegion2D |
XylemGrower.GrowingRegion2D.growRegion()
Grow the region.
|
Modifier and Type | Method and Description |
---|---|
private List<MTBRegion2D> |
XylemGrower.createSeedRegions(MTBImageByte imageToErode,
int minimumPixelPerArea,
int sizeOfStructuringElement)
Create seed regions from the intial segmentation.
|
private static Collection<MTBRegion2D> |
XylemGrower.sortRegionSetBy(MTBRegion2DSet regionSet,
XylemGrower.SortMode sortMode) |
Modifier and Type | Method and Description |
---|---|
private void |
XylemGrower.deleteRegionFromImage(MTBImageByte prelabeledImage,
MTBRegion2D regionToClear)
Set pixels of the points contained in the given region to
0(zero) . |
private static boolean |
XylemGrower.regionTouchesBoundary(MTBRegion2D region2D,
int width,
int height)
Test whether a region is located at, i.e. touches, the boundary of the image.
|
private void |
XylemGrower.relabelRegion(MTBImageByte preLabeledImage,
MTBRegion2D region)
Set the unique id of the given region to the pixel value found at the
coordinate of the first pixel in the region on the pre labeled
MTBImageByte . |
Constructor and Description |
---|
GrowingRegion2D(MTBRegion2D initialRegion,
MTBImageByte grownRegionImage,
XylemGrower.Neighbourhood nb,
int uniqueID) |
Modifier and Type | Field and Description |
---|---|
protected MTBRegion2D |
MTBTreeNodeRegion2D.m_reg
2D region object.
|
Modifier and Type | Field and Description |
---|---|
protected Vector<MTBRegion2D> |
MTBRegion2DSet.regionSet
The set of regions represented as a Vector.
|
Modifier and Type | Method and Description |
---|---|
MTBRegion2D |
MTBRegion2D.clone()
Override java.lang.Object.clone() to create and return a copy of this
object.
|
static MTBRegion2D |
MTBRegion2D.createRandomRegion2D(int xSize,
int ySize,
int maxArea,
Random rndGen)
Create a random connected 2D region of size
maxArea in a hypothetical image of
a random size between 1 and maxArea . |
MTBRegion2D |
MTBRegion2DSet.elementAt(int i)
Get a region by index
|
MTBRegion2D |
MTBRegion2DSet.get(int i)
Get a region by index
|
MTBRegion2D |
MTBTreeNodeRegion2D.getRegion()
Return the 2D region.
|
MTBRegion2D |
MTBRegion2D.getRegion()
Get a Region2D copy of this object.
|
MTBRegion2D |
MTBContour2D.getRegion(int imageSizeX,
int imageSizeY)
Method to get the included region in a 2D contour as Region2D object.
|
MTBRegion2D |
MTBRegion2D.join(MTBRegion2D reg)
Join a region with this region.
|
Modifier and Type | Method and Description |
---|---|
Iterator<MTBRegion2D> |
MTBRegion2DSet.iterator() |
Modifier and Type | Method and Description |
---|---|
boolean |
MTBRegion2DSet.add(MTBRegion2D region)
Append a region (at the end) to the set of regions.
|
private static void |
MTBRegion2D.growRandomRegion2D(int x,
int y,
int xSize,
int ySize,
int area,
MTBRegion2D region2D,
Random rndGen)
Grow a 2D region adding the pixel specified and potentially grow further
|
MTBRegion2D |
MTBRegion2D.join(MTBRegion2D reg)
Join a region with this region.
|
void |
MTBRegion2DSet.remove(MTBRegion2D regionToRemove)
Delete the given region object from the set,
if contained.
|
void |
MTBRegion2DSet.setElementAt(MTBRegion2D region,
int i)
Set the i-th region from the set
|
Constructor and Description |
---|
MTBTreeNodeRegion2D(MTBRegion2D reg)
Construct a new MTBTreeNodeRegion2D from the given 2D region object.
|
Constructor and Description |
---|
MTBRegion2DSet(Vector<MTBRegion2D> regions,
double _xMin,
double _yMin,
double _xMax,
double _yMax)
Construct an empty set of regions with given extent of domain
|
Modifier and Type | Field and Description |
---|---|
private MTBRegion2D |
MTBNeurite2D.neuriteRegion
Neurite corresponding region as MTBRegion2D object.
|
private MTBRegion2D |
MTBNeurite2D.neuriteShaft
Neurite corresponding neurite shaft region as MTBRegion2D object.
|
Modifier and Type | Method and Description |
---|---|
MTBRegion2D |
MTBNeurite2D.getNeuriteRegion()
Get neurite corresponding region.
|
MTBRegion2D |
MTBNeurite2D.getNeuriteShaftRegion()
Get neurite shaft region (without growth cone).
|
Constructor and Description |
---|
MTBNeurite2D(MTBNeuriteSkelGraph _neuriteGraph,
Vector<Vector<Point2D.Double>> _featurePoints,
Vector<Vector<Line2D.Double>> _featureLines,
MTBRegion2D _neuriteRegion,
int _maxSpineLength,
int[] _neuriteShaftLengths,
Vector<Vector<Double>> _neuriteWidths)
Constructor to generate a new neurite object.
|
Modifier and Type | Method and Description |
---|---|
private boolean |
RoiFileToCSVConverter.writeRoiToFile(MTBRegion2D r,
String file)
Writes the given region to the specified file in csv format.
|
Modifier and Type | Field and Description |
---|---|
protected MTBRegion2D |
CellCntrMarkerShapeRegion.mRegion
Region object representing the shape of the marker.
|
Modifier and Type | Method and Description |
---|---|
MTBRegion2D |
CellCntrMarkerShapeRegion.getRegion()
Get region representing the shape.
|
Constructor and Description |
---|
CellCntrMarkerShapeRegion(MTBRegion2D r)
Default constructor with region object.
|
CellCntrMarkerShapeRegion(MTBRegion2D r,
MTBBorder2D b)
Constructor with region and border object.
|
Constructor and Description |
---|
MTBLevelsetMembership(int sizeX,
int sizeY,
Vector<MTBRegion2D> regions,
MTBImage invalidImg,
boolean multiphase)
Constructor for given size which is initialized from a list of 2D regions for a 2D level set function.
|
Modifier and Type | Method and Description |
---|---|
private void |
FillHoles2D.paintFilledRegion(MTBRegion2D reg,
MTBImage img,
MTBImage outImg)
Draw a region without holes to an image.
|
Modifier and Type | Method and Description |
---|---|
static MTBRegion2D |
LabelAreasToRegions.getBackground(MTBImage frame,
int bgLabel) |
Modifier and Type | Field and Description |
---|---|
private MTBRegion2D |
SnakeHelperOperators.RegionConverter.inRegion
Input region.
|
Modifier and Type | Method and Description |
---|---|
static MTBSnake |
MTBSnake.convertRegionToSnake(MTBRegion2D region)
Converts a region into a snake.
|
Constructor and Description |
---|
RegionConverter(MTBRegion2D reg)
Default constructor.
|
Modifier and Type | Method and Description |
---|---|
protected void |
DrawTracks2D.drawSpot(MTBImage img,
MTBRegion2D reg,
int t,
int c,
int color)
Draw region to an image at time=t and channel=c with specified color.
|
protected void |
DrawTracks2D.drawSqare(MTBImage img,
MTBRegion2D reg,
int t,
int c,
int color,
int radius)
Draw square to an image at time=t and channel=c with specified color and size=2*
radius +1. |
Copyright © 2010–2020 Martin Luther University Halle-Wittenberg, Institute of Computer Science, Pattern Recognition and Bioinformatics. All rights reserved.